File Info
- Filename
- Adapter_Metrics.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/bclconvert/L004/Reports/Adapter_Metrics.csv
- Size
- 7.6 KB
- Workflow Run
- dev_rna_exp0008_exp0011-e7be3c7a_b
- Published
- May 28, 2026 12:10 PM
Content
View in new tab| Lane | Sample_ID | index | index2 | ReadNumber | AdapterBases | SampleBases | % Adapter Bases |
| 4 | RT4_FFPE_RNA_0001_B23LG7FLT4_1 | TCACCGTGGT | TCGCTCTGCT | 1 | 0 | 14542097733 | 0.000 |
| 4 | RT4_FFPE_RNA_0001_B23LG7FLT4_1 | TCACCGTGGT | TCGCTCTGCT | 2 | 0 | 14542097733 | 0.000 |
| 4 | 786-O_FFPE_RNA_0001_B23LG7FLT4_1 | CAACTACCGC | ATGCTGCAGG | 1 | 0 | 17527576415 | 0.000 |
| 4 | 786-O_FFPE_RNA_0001_B23LG7FLT4_1 | CAACTACCGC | ATGCTGCAGG | 2 | 0 | 17527576415 | 0.000 |
| 4 | A549_FFPE_01_RNA_0001_B23LG7FLT4_1 | ACTCGTCCAG | TGGTCCTCGT | 1 | 0 | 153192218 | 0.000 |
| 4 | A549_FFPE_01_RNA_0001_B23LG7FLT4_1 | ACTCGTCCAG | TGGTCCTCGT | 2 | 0 | 153192218 | 0.000 |
| 4 | U118MG_FFPE_RNA_0001_B23LG7FLT4_1 | TCCGGAGAAC | ATTCCTCTGG | 1 | 0 | 20493532609 | 0.000 |
| 4 | U118MG_FFPE_RNA_0001_B23LG7FLT4_1 | TCCGGAGAAC | ATTCCTCTGG | 2 | 0 | 20493532609 | 0.000 |
| 4 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 | TTGTGAGAAG | TTCACTGGCT | 1 | 0 | 24803440294 | 0.000 |
| 4 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 | TTGTGAGAAG | TTCACTGGCT | 2 | 0 | 24803440294 | 0.000 |
| 4 | BT-20_FFPE_RNA_0001_B23LG7FLT4_1 | CCGAAGGTTC | TCTATCTGAC | 1 | 0 | 3360754905 | 0.000 |
| 4 | BT-20_FFPE_RNA_0001_B23LG7FLT4_1 | CCGAAGGTTC | TCTATCTGAC | 2 | 0 | 3360754905 | 0.000 |
| 4 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 | ATACACACCT | AGTGTGATAG | 1 | 0 | 668631171 | 0.000 |
| 4 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 | ATACACACCT | AGTGTGATAG | 2 | 0 | 668631171 | 0.000 |
| 4 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 | AGCCTCTGCT | TTCGCCTTAG | 1 | 0 | 21095783878 | 0.000 |
| 4 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 | AGCCTCTGCT | TTCGCCTTAG | 2 | 0 | 21095783878 | 0.000 |
| 4 | RT4_FFPE_RNA_0001_B23LG7FLT4_2 | CGGATCATTA | CCGTAACCTT | 1 | 0 | 14150833781 | 0.000 |
| 4 | RT4_FFPE_RNA_0001_B23LG7FLT4_2 | CGGATCATTA | CCGTAACCTT | 2 | 0 | 14150833781 | 0.000 |
| 4 | 786-O_FFPE_RNA_0001_B23LG7FLT4_2 | CTCTCTCTAG | ACTTGATTGG | 1 | 0 | 19614259156 | 0.000 |
| 4 | 786-O_FFPE_RNA_0001_B23LG7FLT4_2 | CTCTCTCTAG | ACTTGATTGG | 2 | 0 | 19614259156 | 0.000 |
| 4 | A549_FFPE_01_RNA_0001_B23LG7FLT4_2 | AAGGCTCCAT | TGAAGATGGA | 1 | 0 | 113050227 | 0.000 |
| 4 | A549_FFPE_01_RNA_0001_B23LG7FLT4_2 | AAGGCTCCAT | TGAAGATGGA | 2 | 0 | 113050227 | 0.000 |
| 4 | Hs746T_FFPE_RNA_0001_23LG7FLT4_1 | CTTGTTACTG | AATTCGGTGG | 1 | 0 | 23339055280 | 0.000 |
| 4 | Hs746T_FFPE_RNA_0001_23LG7FLT4_1 | CTTGTTACTG | AATTCGGTGG | 2 | 0 | 23339055280 | 0.000 |
| 4 | U118MG_FFPE_RNA_0001_B23LG7FLT4_2 | GATAGATCAG | CGTACGCCAT | 1 | 0 | 21686543443 | 0.000 |
| 4 | U118MG_FFPE_RNA_0001_B23LG7FLT4_2 | GATAGATCAG | CGTACGCCAT | 2 | 0 | 21686543443 | 0.000 |
| 4 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 | GCAGAAGTCT | CTGCGTCGAA | 1 | 0 | 22440980062 | 0.000 |
| 4 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 | GCAGAAGTCT | CTGCGTCGAA | 2 | 0 | 22440980062 | 0.000 |
| 4 | BT-20_FFPE_RNA_0001_B23LG7FLT4_2 | TATACGATGC | CTCCTAATCT | 1 | 0 | 3383650280 | 0.000 |
| 4 | BT-20_FFPE_RNA_0001_B23LG7FLT4_2 | TATACGATGC | CTCCTAATCT | 2 | 0 | 3383650280 | 0.000 |
| 4 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 | AACGCTCTGA | GAGTAACGTG | 1 | 0 | 597131614 | 0.000 |
| 4 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 | AACGCTCTGA | GAGTAACGTG | 2 | 0 | 597131614 | 0.000 |
| 4 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 | GATTGGCGAT | CTGTCTCATT | 1 | 0 | 18098992880 | 0.000 |
| 4 | Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 | GATTGGCGAT | CTGTCTCATT | 2 | 0 | 18098992880 | 0.000 |
| 4 | RT4_FFPE_RNA_0001_B23LG7FLT4_3 | CAAGACGGAC | GTACTCCGTC | 1 | 0 | 11768993303 | 0.000 |
| 4 | RT4_FFPE_RNA_0001_B23LG7FLT4_3 | CAAGACGGAC | GTACTCCGTC | 2 | 0 | 11768993303 | 0.000 |
| 4 | 786-O_FFPE_RNA_0001_B23LG7FLT4_3 | CCACTCAACG | CCTGTCTAGA | 1 | 0 | 18294300810 | 0.000 |
| 4 | 786-O_FFPE_RNA_0001_B23LG7FLT4_3 | CCACTCAACG | CCTGTCTAGA | 2 | 0 | 18294300810 | 0.000 |
| 4 | A549_FFPE_01_RNA_0001_B23LG7FLT4_3 | AGCCACTCGT | CCAAGAGGAT | 1 | 0 | 175275817 | 0.000 |
| 4 | A549_FFPE_01_RNA_0001_B23LG7FLT4_3 | AGCCACTCGT | CCAAGAGGAT | 2 | 0 | 175275817 | 0.000 |
| 4 | U118MG_FFPE_RNA_0001_B23LG7FLT4_3 | GCGAAGAATT | TCACGGATGA | 1 | 0 | 21540886427 | 0.000 |
| 4 | U118MG_FFPE_RNA_0001_B23LG7FLT4_3 | GCGAAGAATT | TCACGGATGA | 2 | 0 | 21540886427 | 0.000 |
| 4 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 | TGTCGGTGCT | AGTTCTTCCG | 1 | 0 | 21230995318 | 0.000 |
| 4 | SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 | TGTCGGTGCT | AGTTCTTCCG | 2 | 0 | 21230995318 | 0.000 |
| 4 | BT-20_FFPE_RNA_0001_B23LG7FLT4_3 | TCTACAGCTA | AATGGAAGAC | 1 | 0 | 3182823149 | 0.000 |
| 4 | BT-20_FFPE_RNA_0001_B23LG7FLT4_3 | TCTACAGCTA | AATGGAAGAC | 2 | 0 | 3182823149 | 0.000 |
| 4 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 | CAACCATGAT | ATAAGGTGAC | 1 | 0 | 665903054 | 0.000 |
| 4 | 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 | CAACCATGAT | ATAAGGTGAC | 2 | 0 | 665903054 | 0.000 |
| 4 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 | CGCACATTAC | TGGAACGTAG | 1 | 0 | 14508009030 | 0.000 |
| 4 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 | CGCACATTAC | TGGAACGTAG | 2 | 0 | 14508009030 | 0.000 |
| 4 | MCF7_FFPE_RNA_0001_B23LG7FLT4_1 | ATCTAACCTG | CCTGTGGTTC | 1 | 0 | 16614919429 | 0.000 |
| 4 | MCF7_FFPE_RNA_0001_B23LG7FLT4_1 | ATCTAACCTG | CCTGTGGTTC | 2 | 0 | 16614919429 | 0.000 |
| 4 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 | GCGACAATAT | ATTCGTACGG | 1 | 0 | 23263095485 | 0.000 |
| 4 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 | GCGACAATAT | ATTCGTACGG | 2 | 0 | 23263095485 | 0.000 |
| 4 | SW780_FFPE_RNA_0001_B23LG7FLT4_1 | TTGCCGTATC | ACATTAGCGG | 1 | 0 | 13808277144 | 0.000 |
| 4 | SW780_FFPE_RNA_0001_B23LG7FLT4_1 | TTGCCGTATC | ACATTAGCGG | 2 | 0 | 13808277144 | 0.000 |
| 4 | A673_FFPE_RNA_0001_B23LG7FLT4_1 | GATCCACTTA | GTGTTCTGTT | 1 | 0 | 17775289801 | 0.000 |
| 4 | A673_FFPE_RNA_0001_B23LG7FLT4_1 | GATCCACTTA | GTGTTCTGTT | 2 | 0 | 17775289801 | 0.000 |
| 4 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCCGAGATGC | TGTCACCTTA | 1 | 0 | 704087028 | 0.000 |
| 4 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCCGAGATGC | TGTCACCTTA | 2 | 0 | 704087028 | 0.000 |
| 4 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 | ATAGAGTTCG | GCATAACGGC | 1 | 0 | 379407885 | 0.000 |
| 4 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 | ATAGAGTTCG | GCATAACGGC | 2 | 0 | 379407885 | 0.000 |
| 4 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 | GCATTCCTTC | GAGCCTGCTT | 1 | 0 | 10512633590 | 0.000 |
| 4 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 | GCATTCCTTC | GAGCCTGCTT | 2 | 0 | 10512633590 | 0.000 |
| 4 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 | AATCGTGCGG | GTTCAGTAGA | 1 | 0 | 16783159854 | 0.000 |
| 4 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 | AATCGTGCGG | GTTCAGTAGA | 2 | 0 | 16783159854 | 0.000 |
| 4 | MCF7_FFPE_RNA_0001_B23LG7FLT4_2 | TACCGGAGCA | CTTAGCAGGC | 1 | 0 | 14433714010 | 0.000 |
| 4 | MCF7_FFPE_RNA_0001_B23LG7FLT4_2 | TACCGGAGCA | CTTAGCAGGC | 2 | 0 | 14433714010 | 0.000 |
| 4 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 | AGCACCAGTC | CTCGTGTAGC | 1 | 0 | 18772177305 | 0.000 |
| 4 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 | AGCACCAGTC | CTCGTGTAGC | 2 | 0 | 18772177305 | 0.000 |
| 4 | SW780_FFPE_RNA_0001_B23LG7FLT4_2 | TACCTAGACT | GCATTCGAAT | 1 | 0 | 14214778053 | 0.000 |
| 4 | SW780_FFPE_RNA_0001_B23LG7FLT4_2 | TACCTAGACT | GCATTCGAAT | 2 | 0 | 14214778053 | 0.000 |
| 4 | A673_FFPE_RNA_0001_B23LG7FLT4_2 | CAGACTGCAG | ACCGGCCTTA | 1 | 0 | 15130292714 | 0.000 |
| 4 | A673_FFPE_RNA_0001_B23LG7FLT4_2 | CAGACTGCAG | ACCGGCCTTA | 2 | 0 | 15130292714 | 0.000 |
| 4 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GTTAGTGCCT | CTGCATAGCA | 1 | 0 | 572405515 | 0.000 |
| 4 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GTTAGTGCCT | CTGCATAGCA | 2 | 0 | 572405515 | 0.000 |
| 4 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CGCAATAAGA | CCTACAGCGT | 1 | 0 | 656445018 | 0.000 |
| 4 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CGCAATAAGA | CCTACAGCGT | 2 | 0 | 656445018 | 0.000 |
| 4 | FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | TCGGTCTGTT | TGGTTGGTAC | 1 | 0 | 14288346310 | 0.000 |
| 4 | FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 | TCGGTCTGTT | TGGTTGGTAC | 2 | 0 | 14288346310 | 0.000 |
| 4 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 | CTAGACGAGC | GAGGATGGAT | 1 | 0 | 19206683580 | 0.000 |
| 4 | KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 | CTAGACGAGC | GAGGATGGAT | 2 | 0 | 19206683580 | 0.000 |
| 4 | MCF7_FFPE_RNA_0001_B23LG7FLT4_3 | GTAATACTCG | CTCACGAATC | 1 | 0 | 16903445699 | 0.000 |
| 4 | MCF7_FFPE_RNA_0001_B23LG7FLT4_3 | GTAATACTCG | CTCACGAATC | 2 | 0 | 16903445699 | 0.000 |
| 4 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 | GATTCTTAGC | TGCTAGCGGT | 1 | 0 | 17620533223 | 0.000 |
| 4 | NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 | GATTCTTAGC | TGCTAGCGGT | 2 | 0 | 17620533223 | 0.000 |
| 4 | SW780_FFPE_RNA_0001_B23LG7FLT4_3 | TGTGATCGCG | AGACGAGTCT | 1 | 0 | 13776001649 | 0.000 |
| 4 | SW780_FFPE_RNA_0001_B23LG7FLT4_3 | TGTGATCGCG | AGACGAGTCT | 2 | 0 | 13776001649 | 0.000 |
| 4 | A673_FFPE_RNA_0001_B23LG7FLT4_3 | ATCGAGAGAC | TGGAAGCAGA | 1 | 0 | 11770196169 | 0.000 |
| 4 | A673_FFPE_RNA_0001_B23LG7FLT4_3 | ATCGAGAGAC | TGGAAGCAGA | 2 | 0 | 11770196169 | 0.000 |
| 4 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | CTGAACGTAT | GCCAATACAT | 1 | 0 | 570710087 | 0.000 |
| 4 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | CTGAACGTAT | GCCAATACAT | 2 | 0 | 570710087 | 0.000 |
| 4 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CACTAGACTT | TGTGGATTAG | 1 | 0 | 246401498 | 0.000 |
| 4 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CACTAGACTT | TGTGGATTAG | 2 | 0 | 246401498 | 0.000 |
| 4 | NTC_0001_0001_B23LG7FLT4_1 | CGTCGCCTAT | TATCTTCTCG | 1 | 0 | 33278286 | 0.000 |
| 4 | NTC_0001_0001_B23LG7FLT4_1 | CGTCGCCTAT | TATCTTCTCG | 2 | 0 | 33278286 | 0.000 |
| 4 | Undetermined | 1 | 0 | 37461577467 | 0.000 | ||
| 4 | Undetermined | 2 | 0 | 37461577467 | 0.000 |
99 rows