File Info
- Filename
- KG1_FFPE_01_RNA_0003_B23LG7FLT4_2.fusions.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/fusionreport/KG1_FFPE_01_RNA_0003_B23LG7FLT4_2/KG1_FFPE_01_RNA_0003_B23LG7FLT4_2.fusions.csv
- Size
- 6.7 KB
- Workflow Run
- dev_rna_exp0008_exp0011-e7be3c7a_b
- Published
- May 28, 2026 4:53 PM
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| FGFR1OP2--FGFR1 | Mitelman | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500) | position: chr12:26957743#chr8:38418373,reading-frame: in-frame,type: translocation,split_reads1: 300,split_reads2: 300,discordant_mates: 40,coverage1: 3737,coverage2: 6256,confidence: high | position: chr12:26957743:+#chr8:38418373:-,junction_reads: 1722,spanning_reads: 43,ffmp: 5.981 |
| ST7--TFEC | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:116953691#chr7:116112038,reading-frame: out-of-frame,type: inversion,split_reads1: 67,split_reads2: 49,discordant_mates: 7,coverage1: 1429,coverage2: 264,confidence: high | position: chr7:116953691:+#chr7:116112038:-,junction_reads: 121,spanning_reads: 8,ffmp: 0.4371 | |
| AMN1--WIF1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr12:31697361#chr12:65062576,reading-frame: out-of-frame,type: duplication,split_reads1: 69,split_reads2: 17,discordant_mates: 0,coverage1: 488,coverage2: 57,confidence: high | position: chr12:31697361:-#chr12:65062576:-,junction_reads: 87,spanning_reads: 0,ffmp: 0.2948 | |
| PPP1R9A--XRCC2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr7:95252130#chr7:152660782,reading-frame: out-of-frame,type: inversion,split_reads1: 23,split_reads2: 37,discordant_mates: 4,coverage1: 370,coverage2: 1387,confidence: high | position: chr7:95252130:+#chr7:152660782:-,junction_reads: 61,spanning_reads: 4,ffmp: 0.2203 | |
| GRIA3--STAG2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chrX:123326213#chrX:124022531,reading-frame: out-of-frame,type: deletion,split_reads1: 20,split_reads2: 9,discordant_mates: 0,coverage1: 206,coverage2: 97,confidence: high | position: chrX:123326213:+#chrX:124022531:+,junction_reads: 29,spanning_reads: 0,ffmp: 0.0983 | |
| FGFR1--FGFR1 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr8:38419629#chr8:38419357,reading-frame: .,type: inversion/3'-3',split_reads1: 172,split_reads2: 66,discordant_mates: 0,coverage1: 1119,coverage2: 89,confidence: high | |
| BCAT1--AC023796.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:24948927#chr12:24830701,reading-frame: out-of-frame,type: inversion,split_reads1: 156,split_reads2: 51,discordant_mates: 0,coverage1: 7660,coverage2: 101,confidence: high | ||
| CCDC169--SOHLH2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:36248606#chr13:36202093,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 29,split_reads2: 38,discordant_mates: 1,coverage1: 421,coverage2: 150,confidence: high | ||
| GRIA3--GRIA3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chrX:123369418#chrX:123326026,reading-frame: .,type: inversion/3'-3',split_reads1: 8,split_reads2: 49,discordant_mates: 0,coverage1: 11,coverage2: 234,confidence: high | ||
| STAG2--GRIA3 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chrX:123961856#chrX:123313950,reading-frame: .,type: inversion/3'-3',split_reads1: 9,split_reads2: 2,discordant_mates: 0,coverage1: 62,coverage2: 44,confidence: high | |
| PCDHGB2--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 99,coverage2: 232,confidence: high | ||
| PCDHGB2--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 99,coverage2: 232,confidence: high | ||
| PCDHGB2--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 99,coverage2: 232,confidence: high | ||
| PCDHGB2--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 99,coverage2: 232,confidence: high | ||
| PCDHGB2--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 99,coverage2: 232,confidence: high | ||
| PCDHGB2--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 99,coverage2: 232,confidence: high | ||
| PCDHGB2--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 99,coverage2: 232,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 16,split_reads2: 12,discordant_mates: 0,coverage1: 219,coverage2: 87,confidence: high | |
| PCDHGB2--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 99,coverage2: 232,confidence: high | ||
| PCDHGB2--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 99,coverage2: 232,confidence: high | ||
| PCDHGB2--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 17,split_reads2: 11,discordant_mates: 0,coverage1: 99,coverage2: 232,confidence: high | ||
| PCDHA4--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 6,split_reads2: 10,discordant_mates: 0,coverage1: 151,coverage2: 37,confidence: high | ||
| PCDHA4--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 6,split_reads2: 10,discordant_mates: 0,coverage1: 151,coverage2: 37,confidence: high | ||
| PCDHA4--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140809572#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 6,split_reads2: 10,discordant_mates: 0,coverage1: 151,coverage2: 37,confidence: high | ||
| PSME4--PSG8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:53866085#chr19:42761859,reading-frame: stop-codon,type: translocation/5'-5',split_reads1: 10,split_reads2: 4,discordant_mates: 1,coverage1: 1610,coverage2: 9,confidence: high | ||
| ST7-OT4--TFEC | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:116955153#chr7:116112038,reading-frame: .,type: inversion,split_reads1: 1,split_reads2: 6,discordant_mates: 1,coverage1: 9,coverage2: 264,confidence: high |
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