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RT4_FFPE_RNA_0001_B23LG7FLT4_3.FusionInspector.fusions.abridged.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/fusioninspector/RT4_FFPE_RNA_0001_B23LG7FLT4_3.FusionInspector.fusions.abridged.tsv
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13.3 KB
Workflow Run
dev_rna_exp0008_exp0011-e7be3c7a_b
Published
May 28, 2026 5:12 PM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 10644 51 10644.00 37.14 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 20257 chr4:1727977:+ INCL_NON_REF_SPLICE YES 5456 4540 1.96 2.36 GT 1.8892 AG 1.7465 36.2691 283 0
FGFR3--TACC3 2895 51 2895.00 10.10 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 20261 chr4:1727981:+ INCL_NON_REF_SPLICE YES 5456 4695 0.54 0.63 GT 1.8892 AG 1.8256 9.8646 285 0
FGFR3--TACC3 695 343 695.00 295.39 FGFR3^ENSG00000068078.20 9977 chr4:1807033:+ TACC3^ENSG00000013810.20 20112 chr4:1727832:+ INCL_NON_REF_SPLICE YES 2882 1326 0.36 0.78 TC 1.3710 AG 1.7819 3.363 141 0
FGFR3--TACC3 62 51 62.00 0.22 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 20243 chr4:1727963:+ INCL_NON_REF_SPLICE YES 5456 4477 0.02 0.03 GT 1.8892 AG 1.7465 0.2112 275 0
FGFR3--TACC3 59 1 59.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 22152 chr4:1730887:+ ONLY_REF_SPLICE YES 5456 7805 0.01 0.01 GT 1.8892 AG 1.9656 0.2003 1499 0
FGFR3--TACC3 9 41 9.00 0.04 FGFR3^ENSG00000068078.20 9885 chr4:1806941:+ TACC3^ENSG00000013810.20 20270 chr4:1727990:+ INCL_NON_REF_SPLICE YES 5285 4775 0.01 0.01 CT 1.9086 AC 1.8295 0.0307 284 0
FGFR3--TACC3 3 59 3.00 0.03 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 20160 chr4:1727880:+ INCL_NON_REF_SPLICE YES 5456 3266 0.01 0.02 GT 1.8892 AG 1.9899 0.0103 245 0
FGFR3--TACC3 3 54 3.00 0.02 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 20197 chr4:1727917:+ INCL_NON_REF_SPLICE YES 5456 3787 0.01 0.02 GT 1.8892 AG 1.9086 0.0103 256 0
FGFR3--TACC3 7 38 7.00 0.02 FGFR3^ENSG00000068078.20 9872 chr4:1806928:+ TACC3^ENSG00000013810.20 20254 chr4:1727974:+ INCL_NON_REF_SPLICE YES 5946 4581 0.01 0.01 AC 1.8892 CT 1.6895 0.0239 286 0
FGFR3--TACC3 4 50 4.00 0.01 FGFR3^ENSG00000068078.20 9875 chr4:1806931:+ TACC3^ENSG00000013810.20 20255 chr4:1727975:+ INCL_NON_REF_SPLICE YES 5676 4565 0.01 0.01 GA 1.8295 TT 1.6895 0.0136 284 0
FGFR3--TACC3 3 36 3.00 0.01 FGFR3^ENSG00000068078.20 9871 chr4:1806927:+ TACC3^ENSG00000013810.20 20251 chr4:1727971:+ INCL_NON_REF_SPLICE YES 6062 4532 0.01 0.01 CA 1.8892 TT 1.8892 0.0102 285 0
FGFR3--TACC3 3 34 3.00 0.01 FGFR3^ENSG00000068078.20 9869 chr4:1806925:+ TACC3^ENSG00000013810.20 20250 chr4:1727970:+ INCL_NON_REF_SPLICE YES 6079 4524 0.01 0.01 TC 1.9329 AT 1.9219 0.0102 287 0
FGFR3--TACC3 8 1 8.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 23567 chr4:1735273:+ ONLY_REF_SPLICE YES 5456 6459 0.00 0.00 GT 1.8892 AG 1.8892 0.0272 2006 0
FGFR3--TACC3 7 1 7.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 20726 chr4:1728446:+ INCL_NON_REF_SPLICE YES 5456 5966 0.00 0.00 GT 1.8892 AG 1.5058 0.0238 250 0
FGFR3--TACC3 6 1 6.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 20963 chr4:1728683:+ INCL_NON_REF_SPLICE YES 5456 5282 0.00 0.00 GT 1.8892 AG 1.6402 0.0204 379 0
FGFR3--TACC3 4 0 4.00 0.00 FGFR3^ENSG00000068078.20 9627 chr4:1806683:+ TACC3^ENSG00000013810.20 22152 chr4:1730887:+ ONLY_REF_SPLICE YES 8507 7805 0.00 0.00 GT 1.7968 AG 1.9656 0.0136 1559 0
FGFR3--TACC3 3 0 3.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 28714 chr4:1740826:+ ONLY_REF_SPLICE YES 5456 6741 0.00 0.00 GT 1.8892 AG 1.8323 0.0102 322 0
FGFR3--TACC3 2 0 2.00 0.00 FGFR3^ENSG00000068078.20 9117 chr4:1806173:+ TACC3^ENSG00000013810.20 23567 chr4:1735273:+ ONLY_REF_SPLICE YES 6646 6459 0.00 0.00 GT 1.4566 AG 1.8892 0.0068 2025 0
ADGRF1--TNFRSF21 620 19 620.00 16.58 ADGRF1^ENSG00000153292.16 7895 chr6:47020731:- TNFRSF21^ENSG00000146072.6 31526 chr6:47284432:- ONLY_REF_SPLICE YES 906 5714 0.71 0.11 GT 1.9656 AG 1.8892 2.1616 1531 0
ADGRF1--TNFRSF21 130 6 130.00 0.94 ADGRF1^ENSG00000153292.16 7895 chr6:47020731:- TNFRSF21^ENSG00000146072.6 31566 chr6:47284392:- INCL_NON_REF_SPLICE YES 906 5834 0.15 0.02 GT 1.9656 AG 1.8892 0.4446 1569 0
ADGRF1--TNFRSF21 90 12 90.00 1.42 ADGRF1^ENSG00000153292.16 6836 chr6:47021958:- TNFRSF21^ENSG00000146072.6 31526 chr6:47284432:- ONLY_REF_SPLICE YES 1220 5714 0.08 0.02 GT 1.7465 AG 1.8892 0.3104 1972 0
ADGRF1--TNFRSF21 9 4 9.00 0.04 ADGRF1^ENSG00000153292.16 6836 chr6:47021958:- TNFRSF21^ENSG00000146072.6 31566 chr6:47284392:- INCL_NON_REF_SPLICE YES 1220 5834 0.01 0.00 GT 1.7465 AG 1.8892 0.0307 2005 0
ADGRF1--TNFRSF21 4 2 4.00 0.01 ADGRF1^ENSG00000153292.16 5735 chr6:47024044:- TNFRSF21^ENSG00000146072.6 31526 chr6:47284432:- ONLY_REF_SPLICE YES 1539 5714 0.00 0.00 GT 1.8892 AG 1.8892 0.0136 1619 0
ADGRF1--TNFRSF21 3 1 3.00 0.00 ADGRF1^ENSG00000153292.16 7895 chr6:47020731:- TNFRSF21^ENSG00000146072.6 33021 chr6:47253521:- ONLY_REF_SPLICE YES 906 2668 0.01 0.00 GT 1.9656 AG 1.9656 0.0102 2621 0
ADGRF1--TNFRSF21 2 1 2.00 0.00 ADGRF1^ENSG00000153292.16 6836 chr6:47021958:- TNFRSF21^ENSG00000146072.6 33021 chr6:47253521:- ONLY_REF_SPLICE YES 1220 2668 0.00 0.00 GT 1.7465 AG 1.9656 0.0068 2942 0
SNRNP40--NKAIN1 301 4 301.00 3.97 SNRNP40^ENSG00000060688.13 1178 chr1:31296611:- NKAIN1^ENSG00000084628.10 19717 chr1:31188187:- ONLY_REF_SPLICE YES 829 38 0.37 7.85 GT 1.9086 AG 1.6729 1.0356 5233 0
SNRNP40--NKAIN1 6 1 6.00 0.02 SNRNP40^ENSG00000060688.13 1178 chr1:31296611:- NKAIN1^ENSG00000084628.10 22020 chr1:31184014:- ONLY_REF_SPLICE YES 829 401 0.01 0.02 GT 1.9086 AG 1.9656 0.0205 3010 0
SNRNP40--NKAIN1 2 1 2.00 0.01 SNRNP40^ENSG00000060688.13 1178 chr1:31296611:- NKAIN1^ENSG00000084628.10 20855 chr1:31185327:- ONLY_REF_SPLICE YES 829 265 0.00 0.02 GT 1.9086 AG 1.9329 0.0068 4124 0
UBE2Q2P1--GOLGA6L10 226 1 223.77 1.00 UBE2Q2P1^ENSG00000189136.9 13590 chr15:84526781:- GOLGA6L10^ENSG00000278662.5 17775 chr15:82347629:- ONLY_REF_SPLICE YES 0 29 228.00 7.60 GT 1.8323 AG 1.7819 0.7632 1203 0
UBE2Q2P1--GOLGA6L10 2 0 2.00 0.00 UBE2Q2P1^ENSG00000189136.9 10644 chr15:84538532:- GOLGA6L10^ENSG00000278662.5 17775 chr15:82347629:- ONLY_REF_SPLICE YES 1 29 1.50 0.10 GT 1.6729 AG 1.7819 0.0068 2226 0
UBE2Q2P1--GOLGA6L10 1 0 1.00 0.00 UBE2Q2P1^ENSG00000189136.9 12752 chr15:84527619:- GOLGA6L10^ENSG00000278662.5 17775 chr15:82347629:- ONLY_REF_SPLICE YES 1 29 1.00 0.07 GT 1.7056 AG 1.7819 0.0034 1011 0
STIM1--OR51M1 182 2 182.00 2.00 STIM1^ENSG00000167323.12 2883 chr11:3856409:+ OR51M1^ENSG00000184698.5 34151 chr11:5385353:+ ONLY_REF_SPLICE YES 586 2 0.32 61.67 GT 1.9329 AG 1.7465 0.6248 1701 0
STIM1--OR51M1 22 0 22.00 0.00 STIM1^ENSG00000167323.12 2883 chr11:3856409:+ OR51M1^ENSG00000184698.5 34169 chr11:5385371:+ INCL_NON_REF_SPLICE YES 586 2 0.04 7.67 GT 1.9329 AG 1.5628 0.0747 1683 0
STX16--NPEPL1 176 1 176.00 1.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 557 32 0.32 5.39 GT 1.7968 AG 1.8256 0.601 1940 0
STX16--NPEPL1 3 0 3.00 0.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 19290 chr20:58693737:+ ONLY_REF_SPLICE YES 557 1707 0.01 0.00 GT 1.7968 AG 1.7819 0.0102 1248 0
STX16--NPEPL1 1 0 1.00 0.00 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 534 32 0.00 0.06 GT 1.8062 AG 1.8256 0.0034 2729 0
CORO7--POLR3K 160 1 160.00 0.84 CORO7^ENSG00000262246.6 14420 chr16:4387986:- POLR3K^ENSG00000161980.6 32258 chr16:47557:- ONLY_REF_SPLICE YES 411 215 0.39 0.75 GT 1.9086 AG 1.9899 0.5462 1864 0
CORO7--POLR3K 31 1 31.00 0.16 CORO7^ENSG00000262246.6 14440 chr16:4387966:- POLR3K^ENSG00000161980.6 32258 chr16:47557:- INCL_NON_REF_SPLICE YES 407 215 0.08 0.15 GT 1.7819 AG 1.9899 0.1058 1844 0
TVP23C--CDRT4 151 1 151.00 0.38 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 247 23 0.62 6.38 GT 1.9329 AG 1.9899 0.514 1215 0
TVP23C--CDRT4 151 1 151.00 0.38 TVP23C^ENSG00000175106.17 6853 chr17:15545785:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 365 23 0.42 6.38 GT 1.9086 AG 1.9899 0.514 1774 0
TVP23C--CDRT4 65 1 65.00 0.16 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 794 23 0.08 2.79 GT 1.8323 AG 1.9899 0.2212 2126 0
TVP23C--CDRT4 44 0 44.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 247 92 0.18 0.48 GT 1.9329 AG 1.6402 0.1494 137 0
TVP23C--CDRT4 40 0 40.00 0.00 TVP23C^ENSG00000175106.17 6853 chr17:15545785:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 365 92 0.11 0.44 GT 1.9086 AG 1.6402 0.1358 697 0
TVP23C--CDRT4 28 1 28.00 0.07 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 111 23 0.27 1.25 GT 1.8892 AG 1.9899 0.0953 1949 0
TVP23C--CDRT4 9 0 9.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 794 92 0.01 0.11 GT 1.8323 AG 1.6402 0.0306 1363 0
TVP23C--CDRT4 8 0 8.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 111 92 0.08 0.10 GT 1.8892 AG 1.6402 0.0272 873 0
TVP23C--CDRT4 1 1 1.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 21051 chr17:15453085:- ONLY_REF_SPLICE YES 794 2 0.00 1.00 GT 1.8323 AG 1.8892 0.0034 1044 0
CCDC12--SETD2 137 0 137.00 0.00 CCDC12^ENSG00000160799.11 3571 chr3:46976637:- SETD2^ENSG00000181555.21 37872 chr3:47062346:- ONLY_REF_SPLICE YES 213 448 0.64 0.31 GT 1.5656 AG 1.7465 0.4652 156 0
CCDC12--SETD2 9 0 9.00 0.00 CCDC12^ENSG00000160799.11 3855 chr3:46976353:- SETD2^ENSG00000181555.21 37872 chr3:47062346:- ONLY_REF_SPLICE YES 176 448 0.06 0.02 GT 1.5656 AG 1.7465 0.0306 412 0
GUSBP13--NAIP 133 3 133.00 3.00 GUSBP13^ENSG00000198237.8 5633 chr5:69920867:+ NAIP^ENSG00000249437.8 14552 chr5:71003857:- ONLY_REF_SPLICE YES 0 32 137.00 4.15 GT 1.9329 AG 1.8295 0.4618 2864 0
AC079781.4--ASNS 129 1 129.00 1.00 AC079781.4^ENSG00000284627.1 1219 chr7:97928082:- ASNS^ENSG00000070669.17 4313 chr7:97872449:- INCL_NON_REF_SPLICE YES 0 8 131.00 14.56 GT 1.4566 AG 1.9219 0.4414 354 0
AC079781.4--ASNS 18 0 18.00 0.00 AC079781.4^ENSG00000284627.1 1219 chr7:97928082:- ASNS^ENSG00000070669.17 6246 chr7:97869813:- ONLY_REF_SPLICE YES 0 869 19.00 0.02 GT 1.4566 AG 1.5301 0.0611 1572 0
AC026150.1--GOLGA6L10 101 0 5.23 0.00 AC026150.1^ENSG00000260693.1 2543 chr15:30544660:+ GOLGA6L10^ENSG00000278662.5 7886 chr15:82347629:- ONLY_REF_SPLICE YES 0 29 102.00 3.40 GT 1.8323 AG 1.7819 0.0178 1572 0
TLK2--AC240565.1 96 0 96.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 507 23 0.19 4.04 GT 1.8892 AG 1.8892 0.326 1734 0
TMED7--TICAM2 90 2 90.00 1.89 TMED7^ENSG00000134970.14 4947 chr5:115616318:- TICAM2^ENSG00000243414.6 13048 chr5:115581315:- INCL_NON_REF_SPLICE YES 674 18 0.14 4.89 GT 1.9329 AG 1.6729 0.312 331 0
TMED7--TICAM2 6 0 6.00 0.00 TMED7^ENSG00000134970.14 4947 chr5:115616318:- TICAM2^ENSG00000243414.6 13166 chr5:115581197:- INCL_NON_REF_SPLICE YES 674 130 0.01 0.05 GT 1.9329 AG 1.9656 0.0204 213 0
TMED7--TICAM2 5 2 5.00 0.11 TMED7^ENSG00000134970.14 4989 chr5:115616276:- TICAM2^ENSG00000243414.6 13048 chr5:115581315:- INCL_NON_REF_SPLICE YES 609 18 0.01 0.42 GC 1.7465 AG 1.6729 0.0174 331 0
TMED7--TICAM2 3 0 3.00 0.00 TMED7^ENSG00000134970.14 3819 chr5:115620435:- TICAM2^ENSG00000243414.6 13048 chr5:115581315:- ONLY_REF_SPLICE YES 666 18 0.01 0.21 GT 1.9656 AG 1.6729 0.0102 1185 0
PMS2P7--CCDC146 48 1 48.00 0.59 PMS2P7^ENSG00000229018.5 5326 chr7:73013277:+ CCDC146^ENSG00000135205.15 11812 chr7:77167658:+ ONLY_REF_SPLICE YES 12 9 3.85 5.00 GT 1.4566 AG 1.7465 0.165 3925 0
PMS2P7--CCDC146 33 2 33.00 1.41 PMS2P7^ENSG00000229018.5 6415 chr7:73016417:+ CCDC146^ENSG00000135205.15 11812 chr7:77167658:+ ONLY_REF_SPLICE YES 28 9 1.24 3.60 GT 1.8323 AG 1.7465 0.1169 4983 0
PMS2P7--CCDC146 14 0 14.00 0.00 PMS2P7^ENSG00000229018.5 5326 chr7:73013277:+ CCDC146^ENSG00000135205.15 12979 chr7:77236947:+ ONLY_REF_SPLICE YES 12 93 1.15 0.16 GT 1.4566 AG 1.9329 0.0475 4386 0
PMS2P7--CCDC146 8 0 8.00 0.00 PMS2P7^ENSG00000229018.5 6415 chr7:73016417:+ CCDC146^ENSG00000135205.15 12979 chr7:77236947:+ ONLY_REF_SPLICE YES 28 93 0.31 0.10 GT 1.8323 AG 1.9329 0.0272 5353 0
CCDC43--GPATCH8 40 0 40.00 0.00 CCDC43^ENSG00000180329.14 1230 chr17:44689550:- GPATCH8^ENSG00000186566.13 12961 chr17:44474903:- ONLY_REF_SPLICE YES 197 136 0.21 0.30 GT 1.4295 AG 1.8892 0.1358 2692 0
CCDC43--GPATCH8 18 0 18.00 0.00 CCDC43^ENSG00000180329.14 2318 chr17:44683872:- GPATCH8^ENSG00000186566.13 12961 chr17:44474903:- ONLY_REF_SPLICE YES 177 136 0.11 0.14 GT 1.1589 AG 1.8892 0.0611 1826 0
IFI6--ZNF146 28 0 28.00 0.00 IFI6^ENSG00000126709.16 3291 chr1:27668226:- ZNF146^ENSG00000167635.12 10662 chr19:36228748:+ ONLY_REF_SPLICE YES 191 12 0.15 2.23 GT 1.8323 AG 1.7465 0.0951 2370 0
CCDC169--SOHLH2 18 1 18.00 1.00 CCDC169^ENSG00000242715.8 10007 chr13:36248606:- SOHLH2^ENSG00000120669.16 24280 chr13:36202093:- ONLY_REF_SPLICE YES 13 2 1.43 6.67 GT 1.8295 AG 1.7232 0.0645 1362 0
HEATR5B--STRN 12 0 12.00 0.00 HEATR5B^ENSG00000008869.12 9411 chr2:37068681:- STRN^ENSG00000115808.12 46506 chr2:36925208:- ONLY_REF_SPLICE YES 271 1491 0.05 0.01 GT 1.7968 AG 1.8892 0.0407 51 2
68 rows