#gene1	gene2	strand1(gene/fusion)	strand2(gene/fusion)	breakpoint1	breakpoint2	site1	site2	type	split_reads1	split_reads2	discordant_mates	coverage1	coverage2	confidence	reading_frame	tags	retained_protein_domains	closest_genomic_breakpoint1	closest_genomic_breakpoint2	gene_id1	gene_id2	transcript_id1	transcript_id2	direction1	direction2	filters	fusion_transcript	peptide_sequence	read_identifiers	breakpoint_ID	vaf1	vaf2	vaf_avg	total_reads	blacklisted	aih_curated_reason	FILTER	filter_reason
ZNF676	KANK3	-/-	-/-	chr19:22193016	chr19:8325096	CDS/splice-site	CDS/splice-site	deletion	16	4	0	385	413	high	stop-codon	.	KRAB_box(100%)|Ankyrin_repeats_(3_copies)(26%),Ankyrin_repeats_(many_copies)(50%)	.	.	ENSG00000196109.9	ENSG00000186994.11	ENST00000650058.1	ENST00000330915.7	upstream	downstream	duplicates(128),mismatches(3)	CACAACTAAGTCGCCAGGACCCCCTGGAAGCCTAGAAATG___GTATTGCTGCCTTTAAGCCAGACCTGATCATTTTTCTGGAGCAAGaAAAAGAGCCCTGGAATATGAAGAGACATGAGATGGTGGAAGAACCCCCAG|GGGCCTGCGAGGTCAACCGCCAGAACCGAGCCGGCTACTCGGCCCTCATGCTGGCTGCACTCACCTCTGTGAGGCAGGAAGAGGAGGA	.	LH00166:238:23LG7FLT4:5:1298:46191:29137,LH00166:238:23LG7FLT4:5:1392:1607:22509,LH00166:238:23LG7FLT4:5:1440:11905:9267,LH00166:238:23LG7FLT4:5:2240:45252:24681,LH00166:238:23LG7FLT4:6:1120:16055:3004,LH00166:238:23LG7FLT4:6:1165:2100:7558,LH00166:238:23LG7FLT4:6:1217:35512:9295,LH00166:238:23LG7FLT4:6:1239:37680:16582,LH00166:238:23LG7FLT4:6:1281:35067:26488,LH00166:238:23LG7FLT4:6:2207:19518:13569,LH00166:238:23LG7FLT4:7:1101:3516:27581,LH00166:238:23LG7FLT4:7:1153:15085:27301,LH00166:238:23LG7FLT4:7:1209:19882:13471,LH00166:238:23LG7FLT4:7:1220:26273:12238,LH00166:238:23LG7FLT4:7:1272:3476:20029,LH00166:238:23LG7FLT4:7:1289:20270:24373,LH00166:238:23LG7FLT4:5:1123:14211:1098,LH00166:238:23LG7FLT4:5:1137:43157:22649,LH00166:238:23LG7FLT4:5:1150:41685:1182,LH00166:238:23LG7FLT4:5:1150:41693:1168,LH00166:238:23LG7FLT4:5:1196:36119:16960,LH00166:238:23LG7FLT4:5:1248:36022:13457,LH00166:238:23LG7FLT4:5:1269:16460:7684,LH00166:238:23LG7FLT4:5:1282:51943:29039,LH00166:238:23LG7FLT4:5:1307:21411:2163,LH00166:238:23LG7FLT4:5:1308:9915:7418,LH00166:238:23LG7FLT4:5:1314:48472:14508,LH00166:238:23LG7FLT4:5:1322:47242:10136,LH00166:238:23LG7FLT4:5:1364:1858:24457,LH00166:238:23LG7FLT4:5:1385:30666:10851,LH00166:238:23LG7FLT4:5:1386:7868:21696,LH00166:238:23LG7FLT4:5:1434:41701:12532,LH00166:238:23LG7FLT4:5:1439:45430:28576,LH00166:238:23LG7FLT4:5:1443:9195:25816,LH00166:238:23LG7FLT4:5:1465:18976:25157,LH00166:238:23LG7FLT4:5:1483:40342:4237,LH00166:238:23LG7FLT4:5:1489:49985:1939,LH00166:238:23LG7FLT4:5:1494:30537:16708,LH00166:238:23LG7FLT4:5:2116:13321:8328,LH00166:238:23LG7FLT4:5:2142:51991:23714,LH00166:238:23LG7FLT4:5:2180:43222:10374,LH00166:238:23LG7FLT4:5:2187:22099:12938,LH00166:238:23LG7FLT4:5:2194:9187:8258,LH00166:238:23LG7FLT4:5:2194:9203:8258,LH00166:238:23LG7FLT4:5:2209:11913:13569,LH00166:238:23LG7FLT4:5:2228:29849:24569,LH00166:238:23LG7FLT4:5:2230:8807:17156,LH00166:238:23LG7FLT4:5:2260:27584:16049,LH00166:238:23LG7FLT4:5:2277:12229:12014,LH00166:238:23LG7FLT4:5:2279:45940:16932,LH00166:238:23LG7FLT4:5:2279:45948:16946,LH00166:238:23LG7FLT4:5:2279:45956:16932,LH00166:238:23LG7FLT4:5:2294:4713:8917,LH00166:238:23LG7FLT4:5:2296:48391:5484,LH00166:238:23LG7FLT4:5:2348:17819:9029,LH00166:238:23LG7FLT4:5:2352:49815:3578,LH00166:238:23LG7FLT4:5:2361:28231:1028,LH00166:238:23LG7FLT4:5:2363:44201:10416,LH00166:238:23LG7FLT4:5:2377:32365:3172,LH00166:238:23LG7FLT4:5:2388:48755:12700,LH00166:238:23LG7FLT4:5:2408:44104:14676,LH00166:238:23LG7FLT4:5:2414:21767:22229,LH00166:238:23LG7FLT4:5:2414:52080:6100,LH00166:238:23LG7FLT4:5:2448:23668:27651,LH00166:238:23LG7FLT4:5:2448:23676:27665,LH00166:238:23LG7FLT4:5:2454:45171:21458,LH00166:238:23LG7FLT4:5:2462:12439:28352,LH00166:238:23LG7FLT4:5:2482:12674:3732,LH00166:238:23LG7FLT4:5:2484:37138:6703,LH00166:238:23LG7FLT4:6:1130:16242:27848,LH00166:238:23LG7FLT4:6:1131:24696:7348,LH00166:238:23LG7FLT4:6:1144:7092:20323,LH00166:238:23LG7FLT4:6:1144:7108:20323,LH00166:238:23LG7FLT4:6:1196:11541:19594,LH00166:238:23LG7FLT4:6:1198:17051:3578,LH00166:238:23LG7FLT4:6:1202:33449:16820,LH00166:238:23LG7FLT4:6:1208:28579:21920,LH00166:238:23LG7FLT4:6:1222:3087:18207,LH00166:238:23LG7FLT4:6:1223:47938:10108,LH00166:238:23LG7FLT4:6:1238:30213:4881,LH00166:238:23LG7FLT4:6:1250:21274:16610,LH00166:238:23LG7FLT4:6:1250:40083:13793,LH00166:238:23LG7FLT4:6:1266:45430:14732,LH00166:238:23LG7FLT4:6:1272:37122:25788,LH00166:238:23LG7FLT4:6:1277:9721:21654,LH00166:238:23LG7FLT4:6:1294:31774:6661,LH00166:238:23LG7FLT4:6:1302:48359:5680,LH00166:238:23LG7FLT4:6:1307:29161:2247,LH00166:238:23LG7FLT4:6:1319:46094:27876,LH00166:238:23LG7FLT4:6:1324:23320:17408,LH00166:238:23LG7FLT4:6:1386:2756:19622,LH00166:238:23LG7FLT4:6:1389:40374:16652,LH00166:238:23LG7FLT4:6:1407:51271:5400,LH00166:238:23LG7FLT4:6:1414:7480:1659,LH00166:238:23LG7FLT4:6:1419:24857:20015,LH00166:238:23LG7FLT4:6:1420:37041:27469,LH00166:238:23LG7FLT4:6:1422:13208:10907,LH00166:238:23LG7FLT4:6:1430:35051:7768,LH00166:238:23LG7FLT4:6:1469:22115:26418,LH00166:238:23LG7FLT4:6:1472:31847:2387,LH00166:238:23LG7FLT4:6:2108:48213:21234,LH00166:238:23LG7FLT4:6:2113:37259:4951,LH00166:238:23LG7FLT4:6:2113:39209:7600,LH00166:238:23LG7FLT4:6:2125:17940:14228,LH00166:238:23LG7FLT4:6:2126:29355:9674,LH00166:238:23LG7FLT4:6:2131:17479:29739,LH00166:238:23LG7FLT4:6:2138:51951:28632,LH00166:238:23LG7FLT4:6:2165:29372:4601,LH00166:238:23LG7FLT4:6:2191:4463:16442,LH00166:238:23LG7FLT4:6:2191:4479:16442,LH00166:238:23LG7FLT4:6:2191:4487:16456,LH00166:238:23LG7FLT4:6:2194:30925:1743,LH00166:238:23LG7FLT4:6:2225:41790:24849,LH00166:238:23LG7FLT4:6:2262:19850:27007,LH00166:238:23LG7FLT4:6:2262:19858:27021,LH00166:238:23LG7FLT4:6:2263:50778:23630,LH00166:238:23LG7FLT4:6:2266:46733:1210,LH00166:238:23LG7FLT4:6:2268:50163:26600,LH00166:238:23LG7FLT4:6:2270:25561:20813,LH00166:238:23LG7FLT4:6:2281:8079:16512,LH00166:238:23LG7FLT4:6:2281:8095:16512,LH00166:238:23LG7FLT4:6:2309:28813:23055,LH00166:238:23LG7FLT4:6:2323:22317:29375,LH00166:238:23LG7FLT4:6:2344:7456:14984,LH00166:238:23LG7FLT4:6:2347:10862:6899,LH00166:238:23LG7FLT4:6:2349:12674:15251,LH00166:238:23LG7FLT4:6:2349:20861:12700,LH00166:238:23LG7FLT4:6:2353:20230:3116,LH00166:238:23LG7FLT4:6:2362:14963:18599,LH00166:238:23LG7FLT4:6:2381:15869:7642,LH00166:238:23LG7FLT4:6:2402:48432:26040,LH00166:238:23LG7FLT4:6:2407:10376:13569,LH00166:238:23LG7FLT4:6:2444:6275:29277,LH00166:238:23LG7FLT4:6:2447:44225:2583,LH00166:238:23LG7FLT4:6:2452:2553:14900,LH00166:238:23LG7FLT4:6:2482:37203:5834,LH00166:238:23LG7FLT4:7:1124:29032:17128,LH00166:238:23LG7FLT4:7:1185:45738:23644,LH00166:238:23LG7FLT4:7:1197:3985:14774,LH00166:238:23LG7FLT4:7:1248:1097:2457,LH00166:238:23LG7FLT4:7:1248:46077:17731,LH00166:238:23LG7FLT4:7:1255:5951:8230,LH00166:238:23LG7FLT4:7:1256:37543:9982,LH00166:238:23LG7FLT4:7:1286:41232:3116,LH00166:238:23LG7FLT4:7:1288:16314:2023,LH00166:238:23LG7FLT4:7:1315:29930:23700,LH00166:238:23LG7FLT4:7:1318:51951:18599,LH00166:238:23LG7FLT4:7:1343:42146:12322,LH00166:238:23LG7FLT4:7:1369:28247:21794,LH00166:238:23LG7FLT4:7:1432:27462:6983,LH00166:238:23LG7FLT4:7:1444:27972:15993	chr19:22193016-chr19:8325096	0.0399002493765586	0.009592326139088728	0.024746287757823664	20	False		PASS	
PARG	BMS1	-/-	+/+	chr10:49885203	chr10:42791627	CDS/splice-site	CDS/splice-site	inversion	8	3	0	867	472	high	in-frame	.	Poly_(ADP-ribose)_glycohydrolase_(PARG)(8%)|40S_ribosome_biogenesis_protein_Tsr1_and_BMS1_C-terminal(100%),AARP2CN_(NUC121)_domain(100%)	.	.	ENSG00000227345.9	ENSG00000165733.8	ENST00000402038.7	ENST00000374518.6	upstream	upstream	duplicates(162),mismatches(10)	GCTTTGgTCGATTTCTGGGATAAG___GTACTTGAAGAAGCAGAAGCTCAACATTTATATCAGTCCATCTTGCCTGATATGGTGAAAATTGCACTCTGTCTGCCAAATATTTGCACCCAG|GGTGtCAAGCTGTTCTACCTTTCTGGAATGGTGCATGGAGAATATCAAAACCAAGAAATCCACAATCTGGGCCGTTTTATTACAGTTATGAAGTTTAGG?tTCTC	ALvDFWDKVLEEAEAQHLYQSILPDMVKIALCLPNICTQ|GvKLFYLSGMVHGEYQNQEIHNLGRFITVMKFR?	LH00166:238:23LG7FLT4:5:1165:50996:18095,LH00166:238:23LG7FLT4:5:1209:24307:22565,LH00166:238:23LG7FLT4:5:1273:47873:22327,LH00166:238:23LG7FLT4:5:1280:35933:11397,LH00166:238:23LG7FLT4:5:1285:51045:15741,LH00166:238:23LG7FLT4:5:1475:28344:14704,LH00166:238:23LG7FLT4:5:2181:17884:9281,LH00166:238:23LG7FLT4:5:2207:42008:22313,LH00166:238:23LG7FLT4:5:2247:21087:29711,LH00166:238:23LG7FLT4:5:2476:22293:5652,LH00166:238:23LG7FLT4:6:1205:27381:10150,LH00166:238:23LG7FLT4:6:1271:45908:18221,LH00166:238:23LG7FLT4:6:1271:45916:18207,LH00166:238:23LG7FLT4:6:1341:12779:17338,LH00166:238:23LG7FLT4:6:1361:51101:8693,LH00166:238:23LG7FLT4:6:1361:51118:8693,LH00166:238:23LG7FLT4:6:1374:38699:18712,LH00166:238:23LG7FLT4:6:1403:31596:4867,LH00166:238:23LG7FLT4:6:1436:2472:1392,LH00166:238:23LG7FLT4:6:1448:38076:3985,LH00166:238:23LG7FLT4:6:1448:38093:3985,LH00166:238:23LG7FLT4:6:1473:9219:16105,LH00166:238:23LG7FLT4:6:2109:36895:22173,LH00166:238:23LG7FLT4:6:2222:16509:16512,LH00166:238:23LG7FLT4:6:2289:35002:7572,LH00166:238:23LG7FLT4:6:2332:25658:19636,LH00166:238:23LG7FLT4:6:2346:48464:14746,LH00166:238:23LG7FLT4:6:2372:5393:20827,LH00166:238:23LG7FLT4:6:2388:2909:19132,LH00166:238:23LG7FLT4:6:2388:2925:19132,LH00166:238:23LG7FLT4:6:2445:3249:6829,LH00166:238:23LG7FLT4:7:1166:3775:4097,LH00166:238:23LG7FLT4:7:1169:25569:23181,LH00166:238:23LG7FLT4:7:1191:14437:22229,LH00166:238:23LG7FLT4:7:1214:51134:20631,LH00166:238:23LG7FLT4:7:1229:36669:14606,LH00166:238:23LG7FLT4:7:1230:4907:17801,LH00166:238:23LG7FLT4:7:1236:7699:13947,LH00166:238:23LG7FLT4:7:1236:7715:13947,LH00166:238:23LG7FLT4:7:1281:46571:29599,LH00166:238:23LG7FLT4:7:1306:4713:7011,LH00166:238:23LG7FLT4:7:1361:49823:14186,LH00166:238:23LG7FLT4:7:1395:14818:19468,LH00166:238:23LG7FLT4:7:1420:25885:16217,LH00166:238:23LG7FLT4:5:1101:47606:21276,LH00166:238:23LG7FLT4:5:1105:38012:10066,LH00166:238:23LG7FLT4:5:1110:17107:6255,LH00166:238:23LG7FLT4:5:1112:30755:21542,LH00166:238:23LG7FLT4:5:1112:30763:21556,LH00166:238:23LG7FLT4:5:1117:42542:16091,LH00166:238:23LG7FLT4:5:1123:38999:16624,LH00166:238:23LG7FLT4:5:1151:25780:19594,LH00166:238:23LG7FLT4:5:1161:24364:12070,LH00166:238:23LG7FLT4:5:1170:19203:4727,LH00166:238:23LG7FLT4:5:1185:47760:19216,LH00166:238:23LG7FLT4:5:1186:38036:21122,LH00166:238:23LG7FLT4:5:1191:10304:3802,LH00166:238:23LG7FLT4:5:1214:38416:17717,LH00166:238:23LG7FLT4:5:1221:20481:12154,LH00166:238:23LG7FLT4:5:1231:37696:28997,LH00166:238:23LG7FLT4:5:1274:25238:1168,LH00166:238:23LG7FLT4:5:1276:36151:2695,LH00166:238:23LG7FLT4:5:1305:40770:5148,LH00166:238:23LG7FLT4:5:1344:23644:26909,LH00166:238:23LG7FLT4:5:1351:23798:8118,LH00166:238:23LG7FLT4:5:1351:51109:29333,LH00166:238:23LG7FLT4:5:1357:15700:5806,LH00166:238:23LG7FLT4:5:1368:42364:24134,LH00166:238:23LG7FLT4:5:1434:40536:11047,LH00166:238:23LG7FLT4:5:1436:43117:10781,LH00166:238:23LG7FLT4:5:1437:23207:18838,LH00166:238:23LG7FLT4:5:1437:23215:18852,LH00166:238:23LG7FLT4:5:1437:23223:18866,LH00166:238:23LG7FLT4:5:1457:49459:18123,LH00166:238:23LG7FLT4:5:1459:2578:8132,LH00166:238:23LG7FLT4:5:1473:38772:2303,LH00166:238:23LG7FLT4:5:1482:51126:17871,LH00166:238:23LG7FLT4:5:1482:51134:17885,LH00166:238:23LG7FLT4:5:1489:15271:9239,LH00166:238:23LG7FLT4:5:1495:21613:2093,LH00166:238:23LG7FLT4:5:2101:38335:17577,LH00166:238:23LG7FLT4:5:2108:45147:8945,LH00166:238:23LG7FLT4:5:2147:14017:25956,LH00166:238:23LG7FLT4:5:2181:31184:3480,LH00166:238:23LG7FLT4:5:2192:31871:10136,LH00166:238:23LG7FLT4:5:2227:32600:27763,LH00166:238:23LG7FLT4:5:2244:27762:10528,LH00166:238:23LG7FLT4:5:2249:24954:29571,LH00166:238:23LG7FLT4:5:2249:34654:20561,LH00166:238:23LG7FLT4:5:2316:23061:24274,LH00166:238:23LG7FLT4:5:2326:5134:21108,LH00166:238:23LG7FLT4:5:2334:3783:3242,LH00166:238:23LG7FLT4:5:2351:22592:9421,LH00166:238:23LG7FLT4:5:2351:22600:9407,LH00166:238:23LG7FLT4:5:2353:10870:22999,LH00166:238:23LG7FLT4:5:2353:10878:22985,LH00166:238:23LG7FLT4:5:2354:1129:3102,LH00166:238:23LG7FLT4:5:2354:16776:15853,LH00166:238:23LG7FLT4:5:2383:31888:2850,LH00166:238:23LG7FLT4:5:2385:38352:24667,LH00166:238:23LG7FLT4:5:2392:26370:26811,LH00166:238:23LG7FLT4:5:2392:26378:26797,LH00166:238:23LG7FLT4:5:2435:43319:27946,LH00166:238:23LG7FLT4:5:2443:46951:10584,LH00166:238:23LG7FLT4:5:2481:5037:8833,LH00166:238:23LG7FLT4:6:1119:33061:1378,LH00166:238:23LG7FLT4:6:1119:47024:24835,LH00166:238:23LG7FLT4:6:1125:45754:11425,LH00166:238:23LG7FLT4:6:1172:50931:15853,LH00166:238:23LG7FLT4:6:1173:51457:15923,LH00166:238:23LG7FLT4:6:1176:36968:15965,LH00166:238:23LG7FLT4:6:1184:35172:8819,LH00166:238:23LG7FLT4:6:1184:35180:8833,LH00166:238:23LG7FLT4:6:1218:43570:28576,LH00166:238:23LG7FLT4:6:1229:20869:1897,LH00166:238:23LG7FLT4:6:1245:10223:17647,LH00166:238:23LG7FLT4:6:1267:39800:10612,LH00166:238:23LG7FLT4:6:1280:20893:24695,LH00166:238:23LG7FLT4:6:1280:20901:24681,LH00166:238:23LG7FLT4:6:1307:2877:1729,LH00166:238:23LG7FLT4:6:1324:42105:22817,LH00166:238:23LG7FLT4:6:1350:23474:14256,LH00166:238:23LG7FLT4:6:1391:20837:25970,LH00166:238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