#gene1 gene2 strand1(gene/fusion) strand2(gene/fusion) breakpoint1 breakpoint2 site1 site2 type split_reads1 split_reads2 discordant_mates coverage1 coverage2 confidence reading_frame tags retained_protein_domains closest_genomic_breakpoint1 closest_genomic_breakpoint2 gene_id1 gene_id2 transcript_id1 transcript_id2 direction1 direction2 filters fusion_transcript peptide_sequence read_identifiers breakpoint_ID vaf1 vaf2 vaf_avg total_reads blacklisted aih_curated_reason FILTER filter_reason ZNF676 KANK3 -/- -/- chr19:22193016 chr19:8325096 CDS/splice-site CDS/splice-site deletion 16 4 0 385 413 high stop-codon . KRAB_box(100%)|Ankyrin_repeats_(3_copies)(26%),Ankyrin_repeats_(many_copies)(50%) . . ENSG00000196109.9 ENSG00000186994.11 ENST00000650058.1 ENST00000330915.7 upstream downstream duplicates(128),mismatches(3) CACAACTAAGTCGCCAGGACCCCCTGGAAGCCTAGAAATG___GTATTGCTGCCTTTAAGCCAGACCTGATCATTTTTCTGGAGCAAGaAAAAGAGCCCTGGAATATGAAGAGACATGAGATGGTGGAAGAACCCCCAG|GGGCCTGCGAGGTCAACCGCCAGAACCGAGCCGGCTACTCGGCCCTCATGCTGGCTGCACTCACCTCTGTGAGGCAGGAAGAGGAGGA . LH00166:238:23LG7FLT4:5:1298:46191:29137,LH00166:238:23LG7FLT4:5:1392:1607:22509,LH00166:238:23LG7FLT4:5:1440:11905:9267,LH00166:238:23LG7FLT4:5:2240:45252:24681,LH00166:238:23LG7FLT4:6:1120:16055:3004,LH00166:238:23LG7FLT4:6:1165:2100:7558,LH00166:238:23LG7FLT4:6:1217:35512:9295,LH00166:238:23LG7FLT4:6:1239:37680:16582,LH00166:238:23LG7FLT4:6:1281:35067:26488,LH00166:238:23LG7FLT4:6:2207:19518:13569,LH00166:238:23LG7FLT4:7:1101:3516:27581,LH00166:238:23LG7FLT4:7:1153:15085:27301,LH00166:238:23LG7FLT4:7:1209:19882:13471,LH00166:238:23LG7FLT4:7:1220:26273:12238,LH00166:238:23LG7FLT4:7:1272:3476:20029,LH00166:238:23LG7FLT4:7:1289:20270:24373,LH00166:238:23LG7FLT4:5:1123:14211:1098,LH00166:238:23LG7FLT4:5:1137:43157:22649,LH00166:238:23LG7FLT4:5:1150:41685:1182,LH00166:238:23LG7FLT4:5:1150:41693:1168,LH00166:238:23LG7FLT4:5:1196:36119:16960,LH00166:238:23LG7FLT4:5:1248:36022:13457,LH00166:238:23LG7FLT4:5:1269:16460:7684,LH00166:238:23LG7FLT4:5:1282:51943:29039,LH00166:238:23LG7FLT4:5:1307:21411:2163,LH00166:238:23LG7FLT4:5:1308:9915:7418,LH00166:238:23LG7FLT4:5:1314:48472:14508,LH00166:238:23LG7FLT4:5:1322:47242:10136,LH00166:238:23LG7FLT4:5:1364:1858:24457,LH00166:238:23LG7FLT4:5:1385:30666:10851,LH00166:238:23LG7FLT4:5:1386:7868:21696,LH00166:238:23LG7FLT4:5:1434:41701:12532,LH00166:238:23LG7FLT4:5:1439:45430:28576,LH00166:238:23LG7FLT4:5:1443:9195:25816,LH00166:238:23LG7FLT4:5:1465:18976:25157,LH00166:238:23LG7FLT4:5:1483:40342:4237,LH00166:238:23LG7FLT4:5:1489:49985:1939,LH00166:238:23LG7FLT4:5:1494:30537:16708,LH00166:238:23LG7FLT4:5:2116:13321:8328,LH00166:238:23LG7FLT4:5:2142:51991:23714,LH00166:238:23LG7FLT4:5:2180:43222:10374,LH00166:238:23LG7FLT4:5:2187:22099:12938,LH00166:238:23LG7FLT4:5:2194:9187:8258,LH00166:238:23LG7FLT4:5:2194:9203:8258,LH00166:238:23LG7FLT4:5:2209:11913:13569,LH00166:238:23LG7FLT4:5:2228:29849:24569,LH00166:238:23LG7FLT4:5:2230:8807:17156,LH00166:238:23LG7FLT4:5:2260:27584:16049,LH00166:238:23LG7FLT4:5:2277:12229:12014,LH00166:238:23LG7FLT4:5:2279:45940:16932,LH00166:238:23LG7FLT4:5:2279:45948:16946,LH00166:238:23LG7FLT4:5:2279:45956:16932,LH00166:238:23LG7FLT4:5:2294:4713:8917,LH00166:238:23LG7FLT4:5:2296:48391:5484,LH00166:238:23LG7FLT4:5:2348:17819:9029,LH00166:238:23LG7FLT4:5:2352:49815:3578,LH00166:238:23LG7FLT4:5:2361:28231:1028,LH00166:238:23LG7FLT4:5:2363:44201:10416,LH00166:238:23LG7FLT4:5:2377:32365:3172,LH00166:238:23LG7FLT4:5:2388:48755:12700,LH00166:238:23LG7FLT4:5:2408:44104:14676,LH00166:238:23LG7FLT4:5:2414:21767:22229,LH00166:238:23LG7FLT4:5:2414:52080:6100,LH00166:238:23LG7FLT4:5:2448:23668:27651,LH00166:238:23LG7FLT4:5:2448:23676:27665,LH00166:238:23LG7FLT4:5:2454:45171:21458,LH00166:238:23LG7FLT4:5:2462:12439:28352,LH00166:238:23LG7FLT4:5:2482:12674:3732,LH00166:238:23LG7FLT4:5:2484:37138:6703,LH00166:238:23LG7FLT4:6:1130:16242:27848,LH00166:238:23LG7FLT4:6:1131:24696:7348,LH00166:238:23LG7FLT4:6:1144:7092:20323,LH00166:238:23LG7FLT4:6:1144:7108:20323,LH00166:238:23LG7FLT4:6:1196:11541:19594,LH00166:238:23LG7FLT4:6:1198:17051:3578,LH00166:238:23LG7FLT4:6:1202:33449:16820,LH00166:238:23LG7FLT4:6:1208:28579:21920,LH00166:238:23LG7FLT4:6:1222:3087:18207,LH00166:238:23LG7FLT4:6:1223:47938:10108,LH00166:238:23LG7FLT4:6:1238:30213:4881,LH00166:238:23LG7FLT4:6:1250:21274:16610,LH00166:238:23LG7FLT4:6:1250:40083:13793,LH00166:238:23LG7FLT4:6:1266:45430:14732,LH00166:238:23LG7FLT4:6:1272:37122:25788,LH00166:238:23LG7FLT4:6:1277:9721:21654,LH00166:238:23LG7FLT4:6:1294:31774:6661,LH00166:238:23LG7FLT4:6:1302:48359:5680,LH00166:238:23LG7FLT4:6:1307:29161:2247,LH00166:238:23LG7FLT4:6:1319:46094:27876,LH00166:238:23LG7FLT4:6:1324:23320:17408,LH00166:238:23LG7FLT4:6:1386:2756:19622,LH00166:238:23LG7FLT4:6:1389:40374:16652,LH00166:238:23LG7FLT4:6:1407:51271:5400,LH00166:238:23LG7FLT4:6:1414:7480:1659,LH00166:238:23LG7FLT4:6:1419:24857:20015,LH00166:238:23LG7FLT4:6:1420:37041:27469,LH00166:238:23LG7FLT4:6:1422:13208:10907,LH00166:238:23LG7FLT4:6:1430:35051:7768,LH00166:238:23LG7FLT4:6:1469:22115:26418,LH00166:238:23LG7FLT4:6:1472:31847:2387,LH00166:238:23LG7FLT4:6:2108:48213:21234,LH00166:238:23LG7FLT4:6:2113:37259:4951,LH00166:238:23LG7FLT4:6:2113:39209:7600,LH00166:238:23LG7FLT4:6:2125:17940:14228,LH00166:238:23LG7FLT4:6:2126:29355:9674,LH00166:238:23LG7FLT4:6:2131:17479:29739,LH00166:238:23LG7FLT4:6:2138:51951:28632,LH00166:238:23LG7FLT4:6:2165:29372:4601,LH00166:238:23LG7FLT4:6:2191:4463:16442,LH00166:238:23LG7FLT4:6:2191:4479:16442,LH00166:238:23LG7FLT4:6:2191:4487:16456,LH00166:238:23LG7FLT4:6:2194:30925:1743,LH00166:238:23LG7FLT4:6:2225:41790:24849,LH00166:238:23LG7FLT4:6:2262:19850:27007,LH00166:238:23LG7FLT4:6:2262:19858:27021,LH00166:238:23LG7FLT4:6:2263:50778:23630,LH00166:238:23LG7FLT4:6:2266:46733:1210,LH00166:238:23LG7FLT4:6:2268:50163:26600,LH00166:238:23LG7FLT4:6:2270:25561:20813,LH00166:238:23LG7FLT4:6:2281:8079:16512,LH00166:238:23LG7FLT4:6:2281:8095:16512,LH00166:238:23LG7FLT4:6:2309:28813:23055,LH00166:238:23LG7FLT4:6:2323:22317:29375,LH00166:238:23LG7FLT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chr19:22193016-chr19:8325096 0.0399002493765586 0.009592326139088728 0.024746287757823664 20 False PASS ZNF676 KANK3 -/- -/- chr19:22215632 chr19:8325096 CDS/splice-site CDS/splice-site deletion 1 0 0 383 413 low out-of-frame . |Ankyrin_repeats_(3_copies)(26%),Ankyrin_repeats_(many_copies)(50%) . . ENSG00000196109.9 ENSG00000186994.11 ENST00000650058.1 ENST00000330915.7 upstream downstream duplicates(9) AAAGGCCTTGTCCTTACTGcTCCTAGAGTCCCAGCCTCTGTGGCCCTATGACCTGCAGGTATTGGGAGATCCACAACTAAGTCGCCAGGACCCCCTGGAAGCCTAGAAATG|GGGCCTGCGAGGTCAACCGCC M|gparst LH00166:238:23LG7FLT4:5:1430:30189:19973,LH00166:238:23LG7FLT4:5:2166:30868:8903,LH00166:238:23LG7FLT4:5:2218:51279:2667,LH00166:238:23LG7FLT4:5:2368:32591:19258,LH00166:238:23LG7FLT4:5:2478:24590:10248,LH00166:238:23LG7FLT4:6:1162:1299:23994,LH00166:238:23LG7FLT4:6:1351:47647:2401,LH00166:238:23LG7FLT4:6:2488:34169:6689,LH00166:238:23LG7FLT4:7:1330:46102:17464,LH00166:238:23LG7FLT4:7:1364:13095:26937 chr19:22215632-chr19:8325096 0.0026041666666666665 0.0 0.0013020833333333333 1 False FAIL confidence_below_min(low