#id: 'seqtools_metrics' #plot_type: 'generalstats' #pconfig: # reads: # namespace: 'SeqTools (general stats)' # title: 'Reads' # description: 'SeqTools (general stats) — reads' # format: '{:,.0f}' # min: 0 # frac_unmapped: # namespace: 'SeqTools (general stats)' # title: 'Frac Unmapped' # description: 'SeqTools (general stats) — frac unmapped' # format: '{:,.2f}' # suffix: '%' # max: 100 # min: 0 # scale: 'RdYlGn' # frac_dupes: # namespace: 'SeqTools (general stats)' # title: 'Frac Dupes' # description: 'SeqTools (general stats) — frac dupes' # format: '{:,.2f}' # suffix: '%' # max: 100 # min: 0 # scale: 'RdYlGn' # unique_reads: # namespace: 'SeqTools (general stats)' # title: 'Unique Reads' # description: 'SeqTools (general stats) — unique reads' # format: '{:,.0f}' # min: 0 # frac_reads_on_target: # namespace: 'SeqTools (general stats)' # title: 'Frac Reads On Target' # description: 'SeqTools (general stats) — frac reads on target' # format: '{:,.2f}' # suffix: '%' # max: 100 # min: 0 # scale: 'RdYlGn' # frac_pairs_on_target: # namespace: 'SeqTools (general stats)' # title: 'Frac Pairs On Target' # description: 'SeqTools (general stats) — frac pairs on target' # format: '{:,.2f}' # suffix: '%' # max: 100 # min: 0 # scale: 'RdYlGn' # frac_reads_off_target: # namespace: 'SeqTools (general stats)' # title: 'Frac Reads Off Target' # description: 'SeqTools (general stats) — frac reads off target' # format: '{:,.2f}' # suffix: '%' # max: 100 # min: 0 # scale: 'RdYlGn' # frac_pairs_off_target: # namespace: 'SeqTools (general stats)' # title: 'Frac Pairs Off Target' # description: 'SeqTools (general stats) — frac pairs off target' # format: '{:,.2f}' # suffix: '%' # max: 100 # min: 0 # scale: 'RdYlGn' # reads_on_target: # namespace: 'SeqTools (general stats)' # title: 'Reads On Target' # description: 'SeqTools (general stats) — reads on target' # format: '{:,.0f}' # min: 0 # pairs_on_target: # namespace: 'SeqTools (general stats)' # title: 'Pairs On Target' # description: 'SeqTools (general stats) — pairs on target' # format: '{:,.0f}' # min: 0 # reads_off_target: # namespace: 'SeqTools (general stats)' # title: 'Reads Off Target' # description: 'SeqTools (general stats) — reads off target' # format: '{:,.0f}' # min: 0 # pairs_off_target: # namespace: 'SeqTools (general stats)' # title: 'Pairs Off Target' # description: 'SeqTools (general stats) — pairs off target' # format: '{:,.0f}' # min: 0 # mean_depth: # namespace: 'SeqTools (general stats)' # title: 'Mean Depth' # description: 'SeqTools (general stats) — mean depth' # format: '{:,.2f}' # q50_depth: # namespace: 'SeqTools (general stats)' # title: 'Q50 Depth' # description: 'SeqTools (general stats) — q50 depth' # format: '{:,.2f}' # frac_bases_gt30x: # namespace: 'SeqTools (general stats)' # title: 'Frac Bases Gt30X' # description: 'SeqTools (general stats) — frac bases gt30x' # format: '{:,.2f}' # suffix: '%' # max: 100 # min: 0 # scale: 'RdYlGn' # frac_bases_gt100x: # namespace: 'SeqTools (general stats)' # title: 'Frac Bases Gt100X' # description: 'SeqTools (general stats) — frac bases gt100x' # format: '{:,.2f}' # suffix: '%' # max: 100 # min: 0 # scale: 'RdYlGn' # n_q30: # namespace: 'SeqTools (general stats)' # title: 'N Q30' # description: 'SeqTools (general stats) — n q30' # format: '{:,.2f}' # gc_bias: # namespace: 'SeqTools (general stats)' # title: 'GC Bias' # description: 'SeqTools (general stats) — Ratio of high GC (63-100%) to low GC (0-43%) reads' # format: '{:,.3f}' # min: 0 # scale: 'RdYlGn' Sample reads frac_unmapped frac_dupes unique_reads frac_reads_on_target frac_pairs_on_target frac_reads_off_target frac_pairs_off_target reads_on_target pairs_on_target reads_off_target pairs_off_target mean_depth q50_depth frac_bases_gt30x frac_bases_gt100x n_q30 gc_bias 'SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1' 586431082 0.015837 0.864817 79275239 0.623085 0.7139 0.259765 0.2861 49395215 24694352 20592906 9896416 65.534027 23.0 0.44493 0.17118 0.970329 0.0