ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2.starfusion.starfusion.fusion_predictions.filtered.tsv

File Info

Filename: ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2.starfusion.starfusion.fusion_predictions.filtered.tsv
Full Path: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/starfusion/ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2.starfusion.starfusion.fusion_predictions.filtered.tsv
Size: 342.2 KB
Workflow Run: dev_rna_exp0008_exp0011-e7be3c7a_b
Published: May 28, 2026 5:50 PM

Content

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#FusionName

JunctionReadCount

SpanningFragCount

est_J

est_S

SpliceType

LeftGene

LeftBreakpoint

RightGene

RightBreakpoint

JunctionReads

SpanningFrags

LargeAnchorSupport

FFPM

LeftBreakDinuc

LeftBreakEntropy

RightBreakDinuc

RightBreakEntropy

annots

breakpoint_ID

blacklisted

blacklist_reasons

aih_curated_reason

CALL

filter_reason

FILTER

total_reads

PRB2--PRH2

148

147.98

0.0

ONLY_REF_SPLICE

PRB2^ENSG00000121335.12

chr12:11392794:-

PRH2^ENSG00000134551.13

chr12:10932226:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1101:13709:12672,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1104:38513:20015,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1108:27082:4671,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1117:44791:10570,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1117:46563:2149,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1132:50300:13891,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1133:28207:11019,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1134:3014:11775,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1144:13273:21192,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1148:42550:21542,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1151:25602:27721,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1155:7027:10402,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1162:14001:8805,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1166:25011:11874,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1188:24914:5680,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1209:13556:25522,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1230:28158:1799,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1231:10619:22285,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1256:46223:21570,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1260:23175:10066,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1272:14106:28408,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1278:6331:14410,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1292:21589:10570,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1293:51611:24260,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1296:44468:20519,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1305:19793:1042,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1306:49305:8609,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1316:27592:19566,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1321:17034:16049,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1327:44637:21878,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1335:40042:27792,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1343:13661:12420,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1343:38036:5512,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1344:37882:19062,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1348:29420:8637,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1351:14494:21738,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1351:16428:7992,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1356:33926:10921,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1358:27487:4335,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1358:33983:5246,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1369:32260:3634,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1376:5757:6549,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1381:43052:3354,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1396:39258:3172,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1436:50478:19356,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1440:31791:10332,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1441:51271:18880,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1476:6590:18081,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1488:9236:22999,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2113:47331:18950,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2121:34938:24190,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2125:12399:14886,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2131:6898:3816,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2136:45479:22775,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2146:12237:23406,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2147:33182:22046,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2167:38352:18810,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2198:49686:7530,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2206:10441:10458,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2208:34614:2247,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2211:20537:29711,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2233:17706:14214,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2245:28652:16273,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2251:16047:5596,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2261:35277:26208,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2262:8257:6199,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2277:39913:12434,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2320:5005:26264,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2323:29153:6016,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2351:19267:2037,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2378:24477:25690,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2421:4487:7740,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2422:50956:27581,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2439:10320:24709,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2460:3961:15853,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2477:7682:19020,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2493:19267:28156,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2496:51700:2836,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1227:6250:3536,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1243:28999:8917,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1260:46312:12252,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1279:42777:7698,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1286:40334:6128,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1328:17738:11103,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1331:7156:5554,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1338:45576:15909,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1341:49435:3901,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1348:27479:18922,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1380:20044:15993,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1414:47979:12224,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1463:18070:23139,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2106:50875:20799,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2123:46312:6283,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2135:1712:18599,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2137:44079:13625,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2173:29250:16245,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2214:17034:25858,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2264:20432:1308,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2266:1016:9071,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2292:7270:2331,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2305:39533:11439,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2311:43764:27567,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2317:9503:17801,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2342:36054:18333,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2442:4309:13625,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2479:37583:10753,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1110:8734:7642,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1117:9195:2219,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1160:50988:10318,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1260:39864:6072,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1293:23070:7165,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1308:7788:9646,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1333:32211:29417,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1375:34832:11145,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1385:36742:17591,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1412:26953:12098,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1495:17989:16610,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2124:29315:3718,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2158:4738:22859,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2236:32357:14928,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2282:16541:16456,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2290:12650:8062,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2317:20092:14732,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2359:23409:29081,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2444:27042:22985,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2473:50503:3760,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1133:50899:14928,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1154:5401:22719,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1177:26451:8539,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1208:34209:12084,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1212:37623:10430,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1214:46110:1813,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1221:18749:23896,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1273:29542:26362,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1312:28870:17324,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1321:11201:12532,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1377:21759:24344,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1470:49589:18403,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1489:37478:13149,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2180:38489:27203,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2257:25941:18613,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2272:43117:18824,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2292:24024:6745,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2305:39864:24288,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2324:49241:17240,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2402:4964:18151,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2421:30585:9758,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2468:4212:25143

YES_LDAS

0.5722

1.8892

1.3996

"[""DGD_PARALOGS"",""INTRACHROMOSOMAL[chr12:0.46Mb]""]"

chr12:11392794-chr12:10932226

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

148

PRH2--PRB2

48.0

0.0

ONLY_REF_SPLICE

PRH2^ENSG00000134551.13

chr12:10931080:+

PRB2^ENSG00000121335.12

chr12:11391648:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1116:3435:26741,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1149:9486:18417,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1155:11922:20309,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1156:3953:13037,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1173:24291:16119,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1208:42833:18193,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1229:48432:14914,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1293:34784:23840,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1297:4107:16834,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1321:4705:8679,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1390:15772:7530,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1391:45697:29123,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1394:45689:3774,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1414:17018:24513,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1489:20570:24611,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2101:10465:21150,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2107:9632:27862,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2141:5288:11201,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2183:10101:24779,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2190:2327:8146,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2205:22115:23055,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2228:8985:22004,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2260:13620:29445,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2312:8338:3929,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2314:43028:9029,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2465:45851:20449,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1115:32276:19160,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1150:10053:17072,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1215:40746:5050,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1242:50891:29515,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1312:33150:26054,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1313:2335:13121,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1428:17601:25578,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1448:3200:12630,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1481:33554:22915,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2115:5676:18123,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2150:24679:22173,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2257:47566:3466,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1168:8394:10865,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1198:33158:24190,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2301:10490:11383,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1126:19469:11075,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1272:6906:20561,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1442:4657:17310,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1453:13936:23966,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2151:16953:28352,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2373:3945:11313,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2386:9430:1701

YES_LDAS

0.1856

1.8062

1.3996

"[""DGD_PARALOGS"",""INTRACHROMOSOMAL[chr12:0.46Mb]""]"

chr12:10931080-chr12:11391648

False

Excluded

annotation

pattern:

DGD_PARALOGS

FAIL

PRH1--PRB3

11.5

0.0

INCL_NON_REF_SPLICE

PRH1^ENSG00000231887.7

chr12:10882217:-

PRB3^ENSG00000197870.12

chr12:11267332:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1123:8216:9015,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1132:9519:8216,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1138:21290:25718,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1164:16654:14186,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1203:42850:1995,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1247:11986:10192,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1272:21557:25423,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1307:7245:9463,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1329:10206:12574,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1364:9842:16035,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1415:12496:28842,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1441:13192:2415,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2104:32106:22369,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2138:46264:5778,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2150:33109:14158,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2164:42664:10697,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2211:16274:27932,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2337:51271:12350,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2485:36588:23574,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1214:41919:10416,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2316:2092:1490,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2481:27875:27007,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2285:10117:8160

NO_LDAS

0.0445

1.8892

1.5656

"[""DGD_PARALOGS"",""INTRACHROMOSOMAL[chr12:0.09Mb]"",""LOCAL_REARRANGEMENT:-:[94316]""]"

chr12:10882217-chr12:11267332

True

pair|recurrent

breakpoints

Blacklisted

FAIL

TPBG--CARM1

14.23

0.0

INCL_NON_REF_SPLICE

TPBG^ENSG00000146242.9

chr6:82365098:+

CARM1^ENSG00000142453.12

chr19:10871591:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1102:31224:11229,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1148:14802:5988,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1152:26289:3999,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2338:50527:12238,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1328:18118:18599,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1467:3977:21290,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1480:45171:14760,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2309:7610:20743,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2342:26047:28156,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1101:15594:19804,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1226:3071:4783,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1361:39775:22509,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2120:34088:6997,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2254:13677:8413,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2268:46765:27525,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2461:26548:7053,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1335:49750:17058,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2489:2723:22649

NO_LDAS

0.055

1.371

0.9183

"[""INTERCHROMOSOMAL[chr6--chr19]""]"

chr6:82365098-chr19:10871591

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

RN7SL674P--RN7SL494P

15.05

0.0

INCL_NON_REF_SPLICE

RN7SL674P^ENSG00000239899.3

chr2:11584878:+

RN7SL494P^ENSG00000241175.3

chr15:50244810:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2104:23563:2387,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2163:46175:18571,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2211:25658:20561,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2215:31791:4867,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2318:9980:1785,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2438:38174:18249,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1439:29202:28128,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2261:32171:25620,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2374:45188:18151,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1369:1194:21290,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2243:22560:3901,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2373:48771:12140,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1176:10506:10150,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1277:24987:15251,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1372:49459:22579,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2432:41741:7782

YES_LDAS

0.0582

1.9086

1.9656

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr2--chr15]""]"

chr2:11584878-chr15:50244810

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

HLA-C--MUC16

13.0

0.0

INCL_NON_REF_SPLICE

HLA-C^ENSG00000204525.17

chr6:31269489:-

MUC16^ENSG00000181143.15

chr19:8848985:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1159:40398:26474,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1169:13604:29445,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1170:21282:12532,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1174:48424:16610,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1260:11201:8721,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1380:15279:7740,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1457:15530:13359,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1457:47089:1042,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1473:29145:7123,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2137:36094:8679,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2251:37478:8609,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2359:3734:7922,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2449:12892:29165

NO_LDAS

0.0503

1.9656

1.8062

"[""GTEx_recurrent_StarF2019"",""INTERCHROMOSOMAL[chr6--chr19]""]"

chr6:31269489-chr19:8848985

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

JUND--CCDC13

9.9

0.0

INCL_NON_REF_SPLICE

JUND^ENSG00000130522.6

chr19:18280504:-

CCDC13^ENSG00000244607.7

chr3:42739711:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1163:35277:12224,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1182:15594:13499,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1185:25820:6213,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1246:31548:12854,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1249:35803:8959,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1331:3637:26082,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1423:15287:3298,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1479:43295:23280,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1115:49313:3466,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2329:23725:16456

NO_LDAS

0.0383

1.7465

1.8892

"[""INTERCHROMOSOMAL[chr19--chr3]""]"

chr19:18280504-chr3:42739711

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

IGL-@-ext--PPM1F-AS1

8.0

0.0

INCL_NON_REF_SPLICE

IGL-@-ext^IGL-.g@-ext

chr22:22900976:-

PPM1F-AS1^ENSG00000224086.6

chr22:21974013:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1216:23668:19833,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1346:27470:21990,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1443:8402:12756,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1125:19364:18431,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2271:41822:17002,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2324:3484:20631,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2169:50236:5372,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2353:12083:8791

NO_LDAS

0.0309

1.9086

1.9656

"[""INTRACHROMOSOMAL[chr22:0.05Mb]"",""LOCAL_INVERSION:-:+:[53302]""]"

chr22:22900976-chr22:21974013

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

IGL-@-ext--CACNA1D

8.0

0.0

INCL_NON_REF_SPLICE

IGL-@-ext^IGL-.g@-ext

chr22:22895371:-

CACNA1D^ENSG00000157388.19

chr3:53782559:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1103:48828:26671,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1117:19170:17198,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1164:4794:2695,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1258:36086:22957,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2385:42445:29235,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2412:32341:21682,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2421:30270:17955,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1218:37292:28184

NO_LDAS

0.0309

1.8256

1.7465

"[""INTERCHROMOSOMAL[chr22--chr3]""]"

chr22:22895371-chr3:53782559

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SPATC1--IGL@-ext

7.0

0.0

INCL_NON_REF_SPLICE

SPATC1^ENSG00000186583.12

chr8:144040803:+

IGL@-ext^IGL.g@-ext

chr22:22895371:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1127:18669:8034,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1167:8831:1364,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1175:32939:24821,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1263:5700:6731,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1361:32664:13695,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1448:17204:25844,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2397:8613:16904

NO_LDAS

0.0271

1.7232

1.8256

"[""INTERCHROMOSOMAL[chr8--chr22]""]"

chr8:144040803-chr22:22895371

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KANSL1--ARL17A

3.5

0.0

ONLY_REF_SPLICE

KANSL1^ENSG00000120071.15

chr17:46094560:-

ARL17A^ENSG00000185829.18

chr17:46570869:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1106:40859:16624,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1108:32122:13653,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1137:49427:12238,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1203:3678:15839,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1344:6954:23868,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1387:51781:1042,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2179:45204:11509

YES_LDAS

0.0135

1.8892

1.7056

"[""GTEx_recurrent_StarF2019"",""Babiceanu_Normal"",""ChimerSeq"",""INTRACHROMOSOMAL[chr17:0.29Mb]""]"

chr17:46094560-chr17:46570869

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

AC099778.1--SLC6A8

7.0

0.0

INCL_NON_REF_SPLICE

AC099778.1^ENSG00000260236.1

chr3:47380520:-

SLC6A8^ENSG00000130821.17

chrX:153688033:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2335:40099:16428,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1229:16144:2429,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1263:5328:13205,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2380:29776:7376,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2498:49119:22775,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1231:3451:4685,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1301:13815:25297

NO_LDAS

0.0271

1.9329

0.9183

"[""INTERCHROMOSOMAL[chr3--chrX]""]"

chr3:47380520-chrX:153688033

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

STATH--FGA

6.0

0.0

INCL_NON_REF_SPLICE

STATH^ENSG00000126549.11

chr4:69999809:+

FGA^ENSG00000171560.16

chr4:154590638:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1245:28457:4055,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2222:32470:1056,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1170:23167:15965,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1430:7464:27301,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2340:18725:24387,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2118:30237:25858

NO_LDAS

0.0232

1.8256

1.9329

"[""INTRACHROMOSOMAL[chr4:84.58Mb]""]"

chr4:69999809-chr4:154590638

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GOLGA2P8--ZNF774

6.0

0.0

INCL_NON_REF_SPLICE

GOLGA2P8^ENSG00000214433.4

chr15:90295226:+

ZNF774^ENSG00000196391.11

chr15:90354642:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1192:41151:4937,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1229:22722:27469,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1239:2116:18067,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2417:11557:16652,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2108:47380:1771,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2198:28919:28618

YES_LDAS

0.0232

1.5329

1.9899

"[""INTRACHROMOSOMAL[chr15:0.06Mb]"",""NEIGHBORS[56601]""]"

chr15:90295226-chr15:90354642

True

pair|recurrent

breakpoints

Blacklisted

FAIL

CHCHD10--AC005064.1

6.0

0.0

INCL_NON_REF_SPLICE

CHCHD10^ENSG00000250479.9

chr22:23767834:-

AC005064.1^ENSG00000234715.2

chr7:103446122:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1102:37421:10276,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1123:50543:26530,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1141:8677:23966,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1221:47655:17184,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1449:36984:8398,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1468:39339:22705

NO_LDAS

0.0232

1.6402

1.1589

"[""INTERCHROMOSOMAL[chr22--chr7]""]"

chr22:23767834-chr7:103446122

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

MMP24OS--SLC2A9

5.0

0.0

INCL_NON_REF_SPLICE

MMP24OS^ENSG00000126005.17

chr20:35277769:-

SLC2A9^ENSG00000109667.12

chr4:10035220:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1158:17067:12098,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1198:20796:2135,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1231:30059:19384,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2374:44379:22046,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1205:26532:15545

NO_LDAS

0.0193

1.3383

1.4566

"[""INTERCHROMOSOMAL[chr20--chr4]""]"

chr20:35277769-chr4:10035220

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GTF2E2--SLC6A8

4.8

0.0

INCL_NON_REF_SPLICE

GTF2E2^ENSG00000197265.9

chr8:30658137:-

SLC6A8^ENSG00000130821.17

chrX:153688033:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1464:6275:15769,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1374:35180:14970,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1412:47930:7852,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2263:20278:4629,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2315:25950:6549

NO_LDAS

0.0186

1.2419

0.9183

"[""INTERCHROMOSOMAL[chr8--chrX]""]"

chr8:30658137-chrX:153688033

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC104123.1--CAST

5.0

0.0

ONLY_REF_SPLICE

AC104123.1^ENSG00000251314.2

chr5:96379652:+

CAST^ENSG00000153113.24

chr5:96675539:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1213:34023:10893,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1396:22439:11061,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1497:13717:9379,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1390:48593:22761,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2146:48003:4503

YES_LDAS

0.0193

1.7819

1.8295

"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr5:0.11Mb]""]"

chr5:96379652-chr5:96675539

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

IGL-@-ext--STMN3

4.0

0.0

INCL_NON_REF_SPLICE

IGL-@-ext^IGL-.g@-ext

chr22:22900976:-

STMN3^ENSG00000197457.10

chr20:63640245:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1253:24623:5148,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1452:24469:4994,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2496:25189:2093,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1304:8847:7502

NO_LDAS

0.0155

1.9086

1.8295

"[""INTERCHROMOSOMAL[chr22--chr20]""]"

chr22:22900976-chr20:63640245

True

pair|recurrent

breakpoints

Blacklisted

FAIL

HLA-C--NUMA1

4.0

0.0

INCL_NON_REF_SPLICE

HLA-C^ENSG00000204525.17

chr6:31269493:-

NUMA1^ENSG00000137497.18

chr11:72013673:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1169:21702:1715,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1272:27001:12826,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1340:22527:6507,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1265:43837:22845

NO_LDAS

0.0155

1.8256

1.7819

"[""INTERCHROMOSOMAL[chr6--chr11]""]"

chr6:31269493-chr11:72013673

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

AL139383.1--STARD13

4.0

0.0

ONLY_REF_SPLICE

AL139383.1^ENSG00000230490.3

chr13:33359465:-

STARD13^ENSG00000133121.21

chr13:33167622:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1119:22018:13247,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1120:32972:12938,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1184:22544:13177,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1219:46086:7488

YES_LDAS

0.0155

1.6895

1.6402

"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr13:0.00Mb]"",""NEIGHBORS[4576]""]"

chr13:33359465-chr13:33167622

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

ZFP64--SIGLEC12

3.0

0.0

INCL_NON_REF_SPLICE

ZFP64^ENSG00000020256.20

chr20:52160119:-

SIGLEC12^ENSG00000254521.7

chr19:51499621:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1177:14421:18978,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1252:32794:10024,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2120:16444:10626

NO_LDAS

0.0116

1.9329

1.3996

"[""INTERCHROMOSOMAL[chr20--chr19]""]"

chr20:52160119-chr19:51499621

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

XIAP--ZBTB4

3.0

0.0

ONLY_REF_SPLICE

XIAP^ENSG00000101966.13

chrX:123860293:+

ZBTB4^ENSG00000174282.12

chr17:7467327:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1162:36701:29375,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1190:8710:16147,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1216:51207:25017

NO_LDAS

0.0116

1.5058

1.5219

"[""INTERCHROMOSOMAL[chrX--chr17]""]"

chrX:123860293-chr17:7467327

False

Read

count

too

low:

FAIL

UMAD1--GLCCI1

3.0

0.0

ONLY_REF_SPLICE

UMAD1^ENSG00000219545.11

chr7:7801743:+

GLCCI1^ENSG00000106415.13

chr7:8003908:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1356:23870:19566,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1408:12423:1196,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1488:48545:10907

YES_LDAS

0.0116

1.9656

1.7465

"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr7:0.00Mb]"",""NEIGHBORS[776]""]"

chr7:7801743-chr7:8003908

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

TVP23C--CDRT4

3.0

0.0

INCL_NON_REF_SPLICE

TVP23C^ENSG00000175106.17

chr17:15503098:-

CDRT4^ENSG00000239704.11

chr17:15438200:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1108:38311:21598,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1484:46401:3718,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1368:8499:23798

YES_LDAS

0.0116

1.9329

1.6402

"[""INTRACHROMOSOMAL[chr17:0.03Mb]"",""NEIGHBORS[26536]""]"

chr17:15503098-chr17:15438200

False

Read

count

too

low:

FAIL

TPD52--NCOA2

3.0

0.0

ONLY_REF_SPLICE

TPD52^ENSG00000076554.15

chr8:80171425:-

NCOA2^ENSG00000140396.13

chr8:70174859:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1122:36758:9015,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1288:21638:24050,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2346:35941:6955

YES_LDAS

0.0116

1.5656

1.7819

"[""INTRACHROMOSOMAL[chr8:9.63Mb]""]"

chr8:80171425-chr8:70174859

False

Read

count

too

low:

FAIL

SPAG1--NAV1

1.5

0.0

INCL_NON_REF_SPLICE

SPAG1^ENSG00000104450.13

chr8:100213278:+

NAV1^ENSG00000134369.15

chr1:201648719:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1111:37106:8328,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2214:23231:29221,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1288:51279:26320

NO_LDAS

0.0058

0.9183

1.3996

"[""INTERCHROMOSOMAL[chr8--chr1]""]"

chr8:100213278-chr1:201648719

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SAA4--SAA1

3.0

0.0

ONLY_REF_SPLICE

SAA4^ENSG00000148965.10

chr11:18232395:-

SAA1^ENSG00000173432.12

chr11:18269717:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1113:43052:12014,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1133:26403:29193,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1422:51393:12028

YES_LDAS

0.0116

1.9329

1.7819

"[""DGD_PARALOGS"",""INTRACHROMOSOMAL[chr11:0.03Mb]"",""LOCAL_INVERSION:-:+:[29458]""]"

chr11:18232395-chr11:18269717

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

MZT2B--AC018804.1

3.0

0.0

INCL_NON_REF_SPLICE

MZT2B^ENSG00000152082.15

chr2:130182775:+

AC018804.1^ENSG00000227632.2

chr2:130202325:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2164:48359:17591,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2273:28093:27413,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1353:13256:9730

YES_LDAS

0.0116

1.7819

1.9899

"[""INTRACHROMOSOMAL[chr2:0.01Mb]"",""NEIGHBORS[11583]""]"

chr2:130182775-chr2:130202325

True

pair|recurrent

breakpoints

Blacklisted

FAIL

LEPROTL1--SMG1P1

1.0

0.0

ONLY_REF_SPLICE

LEPROTL1^ENSG00000104660.19

chr8:30104991:+

SMG1P1^ENSG00000237296.9

chr16:22451620:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1418:44904:27273,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1204:37089:14158,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1435:13362:22411

YES_LDAS

0.0039

1.8892

1.9656

"[""INTERCHROMOSOMAL[chr8--chr16]""]"

chr8:30104991-chr16:22451620

True

pair|recurrent

breakpoints

Blacklisted

FAIL

LDLRAD3--PRR5L

3.0

0.0

INCL_NON_REF_SPLICE

LDLRAD3^ENSG00000179241.13

chr11:36098461:+

PRR5L^ENSG00000135362.14

chr11:36296290:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1405:9519:26993,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1411:41531:19328,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2309:26880:13849

YES_LDAS

0.0116

1.9329

1.8892

"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr11:0.06Mb]"",""NEIGHBORS[64152]""]"

chr11:36098461-chr11:36296290

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

HIVEP3--GNAS

3.0

0.0

ONLY_REF_SPLICE

HIVEP3^ENSG00000127124.16

chr1:42035807:-

GNAS^ENSG00000087460.28

chr20:58903531:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1242:20465:12098,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2348:42324:23504,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2265:6768:27441

YES_LDAS

0.0116

1.2867

1.7465

"[""INTERCHROMOSOMAL[chr1--chr20]""]"

chr1:42035807-chr20:58903531

False

Read

count

too

low:

FAIL

HIC2--PI4KA

3.0

0.0

ONLY_REF_SPLICE

HIC2^ENSG00000169635.10

chr22:21442857:+

PI4KA^ENSG00000241973.11

chr22:20718822:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1125:47534:14284,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1159:46822:7221,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2233:14041:8314

NO_LDAS

0.0116

1.7465

1.8892

"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr22:0.56Mb]""]"

chr22:21442857-chr22:20718822

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

EVC--ACSL6-AS1

1.5

0.0

INCL_NON_REF_SPLICE

EVC^ENSG00000072840.13

chr4:5711554:+

ACSL6-AS1^ENSG00000223548.1

chr5:132006943:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1122:41604:11271,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1306:44273:20071,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2488:3645:3284

NO_LDAS

0.0058

1.5301

1.7819

"[""INTERCHROMOSOMAL[chr4--chr5]""]"

chr4:5711554-chr5:132006943

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EVC--AC051619.4

1.5

0.0

INCL_NON_REF_SPLICE

EVC^ENSG00000072840.13

chr4:5711554:+

AC051619.4^ENSG00000259520.6

chr15:45253779:-

NO_LDAS

0.0058

1.5301

1.7465

"[""INTERCHROMOSOMAL[chr4--chr15]""]"

chr4:5711554-chr15:45253779

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CA13--CA3

3.0

0.0

INCL_NON_REF_SPLICE

CA13^ENSG00000185015.8

chr8:85281639:+

CA3^ENSG00000164879.7

chr8:85439712:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1123:44128:18641,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1183:19801:19861,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1393:24121:3830

YES_LDAS

0.0116

1.7968

1.8892

"[""DGD_PARALOGS"",""ConjoinG"",""GTEx_recurrent_StarF2019"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr8:0.09Mb]"",""NEIGHBORS[89363]""]"

chr8:85281639-chr8:85439712

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

ARL17A--KANSL1

1.5

0.0

ONLY_REF_SPLICE

ARL17A^ENSG00000185829.18

chr17:46570759:-

KANSL1^ENSG00000120071.15

chr17:46094701:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1414:32041:2864,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2176:24954:10963,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2450:5425:29263

YES_LDAS

0.0058

1.6402

1.7819

"[""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr17:0.29Mb]""]"

chr17:46570759-chr17:46094701

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

ZBTB38--AC240565.1

0.33

0.0

ONLY_REF_SPLICE

ZBTB38^ENSG00000177311.11

chr3:141438365:+

AC240565.1^ENSG00000280136.2

chr17:106864:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1309:26314:2780,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2181:24704:5512

NO_LDAS

0.0013

1.9329

1.8892

"[""INTERCHROMOSOMAL[chr3--chr17]""]"

chr3:141438365-chr17:106864

True

pair|recurrent

breakpoints

Blacklisted

FAIL

TTLL12--STRC

1.0

0.0

INCL_NON_REF_SPLICE

TTLL12^ENSG00000100304.13

chr22:43187091:-

STRC^ENSG00000242866.10

chr15:43601551:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2219:51935:11621,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2378:26217:4069

NO_LDAS

0.0039

1.5546

1.5656

"[""INTERCHROMOSOMAL[chr22--chr15]""]"

chr22:43187091-chr15:43601551

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TRIP10--CMTM4

2.0

0.0

INCL_NON_REF_SPLICE

TRIP10^ENSG00000125733.18

chr19:6739724:+

CMTM4^ENSG00000183723.13

chr16:66696634:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1493:49241:26825,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1170:17957:2093

NO_LDAS

0.0077

1.1589

1.231

"[""INTERCHROMOSOMAL[chr19--chr16]""]"

chr19:6739724-chr16:66696634

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TLK2P1--AC110079.1

0.17

0.0

INCL_NON_REF_SPLICE

TLK2P1^ENSG00000226049.3

chr17:34039043:-

AC110079.1^ENSG00000260404.3

chr4:118595912:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2118:31896:20071,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1252:5644:28212

YES_LDAS

0.0007

1.7465

1.8892

"[""INTERCHROMOSOMAL[chr17--chr4]""]"

chr17:34039043-chr4:118595912

False

Read

count

too

low:

FAIL

TBKBP1--PDGFC

0.67

0.0

INCL_NON_REF_SPLICE

TBKBP1^ENSG00000198933.9

chr17:47708852:+

PDGFC^ENSG00000145431.11

chr4:156971504:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1202:14171:25830,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1227:3767:26362

NO_LDAS

0.0026

1.5546

1.053

"[""INTERCHROMOSOMAL[chr17--chr4]""]"

chr17:47708852-chr4:156971504

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

STATH--ZBED6

2.0

0.0

INCL_NON_REF_SPLICE

STATH^ENSG00000126549.11

chr4:69998492:+

ZBED6^ENSG00000257315.3

chr1:203799999:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1359:2214:18936,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1409:31847:15166

NO_LDAS

0.0077

1.7968

1.7465

"[""INTERCHROMOSOMAL[chr4--chr1]""]"

chr4:69998492-chr1:203799999

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

STAT4--AC079777.1

2.0

0.0

INCL_NON_REF_SPLICE

STAT4^ENSG00000138378.19

chr2:191076227:-

AC079777.1^ENSG00000280083.1

chr2:191155378:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1163:17633:12406,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1354:33053:4251

YES_LDAS

0.0077

1.9656

1.8892

"[""INTRACHROMOSOMAL[chr2:0.00Mb]"",""LOCAL_REARRANGEMENT:-:[2522]""]"

chr2:191076227-chr2:191155378

False

Read

count

too

low:

FAIL

SPTBN1--IGL@-ext

1.0

0.0

INCL_NON_REF_SPLICE

SPTBN1^ENSG00000115306.16

chr2:54668619:+

IGL@-ext^IGL.g@-ext

chr22:22770979:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2216:6097:20589,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1160:24113:9898

NO_LDAS

0.0039

1.8892

1.2867

"[""INTERCHROMOSOMAL[chr2--chr22]""]"

chr2:54668619-chr22:22770979

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SPTBN1--IGL@-ext

1.0

0.0

INCL_NON_REF_SPLICE

SPTBN1^ENSG00000115306.16

chr2:54668619:+

IGL@-ext^IGL.g@-ext

chr22:22711518:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2216:6097:20589,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1160:24113:9898

NO_LDAS

0.0039

1.8892

1.2867

"[""INTERCHROMOSOMAL[chr2--chr22]""]"

chr2:54668619-chr22:22711518

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SPCS3--RN7SL454P

2.0

0.0

INCL_NON_REF_SPLICE

SPCS3^ENSG00000129128.13

chr4:176331683:+

RN7SL454P^ENSG00000243426.3

chr17:78532998:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1111:4527:3018,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1440:38950:9449

NO_LDAS

0.0077

1.3753

1.9656

"[""INTERCHROMOSOMAL[chr4--chr17]""]"

chr4:176331683-chr17:78532998

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SOX9--AC132872.5

2.0

0.0

INCL_NON_REF_SPLICE

SOX9^ENSG00000125398.8

chr17:72123946:+

AC132872.5^ENSG00000287737.1

chr17:82274591:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1131:51894:26040,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1242:11889:15517

NO_LDAS

0.0077

1.3383

1.371

"[""INTRACHROMOSOMAL[chr17:10.15Mb]""]"

chr17:72123946-chr17:82274591

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SH3BP5--ITPR1

2.0

0.0

ONLY_REF_SPLICE

SH3BP5^ENSG00000131370.16

chr3:15304103:-

ITPR1^ENSG00000150995.20

chr3:4627763:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1150:39177:13289,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1231:43473:15349

YES_LDAS

0.0077

1.5546

1.9086

"[""INTRACHROMOSOMAL[chr3:10.41Mb]""]"

chr3:15304103-chr3:4627763

False

Read

count

too

low:

FAIL

SEC24B--SETX

2.0

0.0

INCL_NON_REF_SPLICE

SEC24B^ENSG00000138802.11

chr4:109539667:+

SETX^ENSG00000107290.14

chr9:132311856:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1159:3111:12252,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2158:19939:25199

NO_LDAS

0.0077

1.9656

1.8323

"[""INTERCHROMOSOMAL[chr4--chr9]""]"

chr4:109539667-chr9:132311856

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RTL10--CST5

2.0

0.0

INCL_NON_REF_SPLICE

RTL10^ENSG00000215012.9

chr22:19850205:-

CST5^ENSG00000170367.5

chr20:23877618:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1432:13370:2303,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2126:3864:24905

NO_LDAS

0.0077

1.8892

1.4716

"[""INTERCHROMOSOMAL[chr22--chr20]""]"

chr22:19850205-chr20:23877618

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPS24--PARVA

2.0

0.0

INCL_NON_REF_SPLICE

RPS24^ENSG00000138326.21

chr10:78040225:+

PARVA^ENSG00000197702.14

chr11:12530871:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2293:1639:9085,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2403:14672:25802

NO_LDAS

0.0077

1.9086

1.4295

"[""INTERCHROMOSOMAL[chr10--chr11]""]"

chr10:78040225-chr11:12530871

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

RPL7A--RPL7AP28

0.5

0.0

INCL_NON_REF_SPLICE

RPL7A^ENSG00000148303.17

chr9:133350000:+

RPL7AP28^ENSG00000184139.8

chr4:131857572:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1262:30634:15026,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1324:46183:1154

NO_LDAS

0.0019

1.5058

1.9656

"[""INTERCHROMOSOMAL[chr9--chr4]""]"

chr9:133350000-chr4:131857572

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPL7A--AC092506.1

0.5

0.0

INCL_NON_REF_SPLICE

RPL7A^ENSG00000148303.17

chr9:133350000:+

AC092506.1^ENSG00000215869.4

chr1:104073280:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1262:30634:15026,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1324:46183:1154

NO_LDAS

0.0019

1.5058

1.9656

"[""INTERCHROMOSOMAL[chr9--chr1]""]"

chr9:133350000-chr1:104073280

True

pair|recurrent

breakpoints

Blacklisted

FAIL

RNF212--CACNA1D

2.0

0.0

ONLY_REF_SPLICE

RNF212^ENSG00000178222.13

chr4:1096765:-

CACNA1D^ENSG00000157388.19

chr3:53702641:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1206:16784:12168,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2253:37478:7628

YES_LDAS

0.0077

1.8256

1.8295

"[""INTERCHROMOSOMAL[chr4--chr3]""]"

chr4:1096765-chr3:53702641

False

Read

count

too

low:

FAIL

REV3L--CEP128

2.0

0.0

ONLY_REF_SPLICE

REV3L^ENSG00000009413.16

chr6:111482750:-

CEP128^ENSG00000100629.17

chr14:80862873:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1114:43586:2569,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1218:12625:5526

YES_LDAS

0.0077

1.5219

1.8323

"[""INTERCHROMOSOMAL[chr6--chr14]""]"

chr6:111482750-chr14:80862873

False

Read

count

too

low:

FAIL

REPS2--IGL-@-ext

2.0

0.0

INCL_NON_REF_SPLICE

REPS2^ENSG00000169891.18

chrX:16946774:+

IGL-@-ext^IGL-.g@-ext

chr22:22603357:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1275:31807:25522,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1468:22042:24162

NO_LDAS

0.0077

0.9183

1.7819

"[""INTERCHROMOSOMAL[chrX--chr22]""]"

chrX:16946774-chr22:22603357

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

REEP3--TRAF3IP1

2.0

0.0

INCL_NON_REF_SPLICE

REEP3^ENSG00000165476.14

chr10:63610334:+

TRAF3IP1^ENSG00000204104.12

chr2:238400117:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1221:30537:5498,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2191:14276:29403

YES_LDAS

0.0077

1.9329

1.9219

"[""INTERCHROMOSOMAL[chr10--chr2]""]"

chr10:63610334-chr2:238400117

False

Read

count

too

low:

FAIL

RBPMS-AS1--MXI1

2.0

0.0

ONLY_REF_SPLICE

RBPMS-AS1^ENSG00000254109.6

chr8:30385144:-

MXI1^ENSG00000119950.21

chr10:110228189:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1103:1647:1168,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1153:32365:10542

YES_LDAS

0.0077

1.7968

1.9329

"[""INTERCHROMOSOMAL[chr8--chr10]""]"

chr8:30385144-chr10:110228189

False

Read

count

too

low:

FAIL

RBM19--BECN1

2.0

0.0

INCL_NON_REF_SPLICE

RBM19^ENSG00000122965.11

chr12:113818075:-

BECN1^ENSG00000126581.13

chr17:42810928:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2146:32939:7221,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1318:15457:5414

YES_LDAS

0.0077

1.9086

1.5058

"[""INTERCHROMOSOMAL[chr12--chr17]""]"

chr12:113818075-chr17:42810928

False

Read

count

too

low:

FAIL

RBM14--RBM4

2.0

0.0

ONLY_REF_SPLICE

RBM14^ENSG00000239306.5

chr11:66617057:+

RBM4^ENSG00000173933.21

chr11:66639700:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1332:31160:23280,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2376:11315:13933

YES_LDAS

0.0077

1.7465

1.9086

"[""HGNC_GENEFAM"",""Greger_Normal"",""INTRACHROMOSOMAL[chr11:0.01Mb]"",""NEIGHBORS[8733]""]"

chr11:66617057-chr11:66639700

True

pair|recurrent

breakpoints

Blacklisted

FAIL

PXT1--STK38

2.0

0.0

ONLY_REF_SPLICE

PXT1^ENSG00000179165.11

chr6:36425914:-

STK38^ENSG00000112079.9

chr6:36540207:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1231:29978:25886,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2305:13014:14410

NO_LDAS

0.0077

1.9329

"[""INTRACHROMOSOMAL[chr6:0.05Mb]"",""LOCAL_REARRANGEMENT:-:[51038]""]"

chr6:36425914-chr6:36540207

False

Read

count

too

low:

FAIL

PRR5L--IGL@-ext

0.5

0.0

INCL_NON_REF_SPLICE

PRR5L^ENSG00000135362.14

chr11:36462381:+

IGL@-ext^IGL.g@-ext

chr22:22922592:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1269:35941:29683,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2395:13580:16932

NO_LDAS

0.0019

1.9899

1.8256

"[""INTERCHROMOSOMAL[chr11--chr22]""]"

chr11:36462381-chr22:22922592

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PRR5L--IGL@-ext

0.5

0.0

INCL_NON_REF_SPLICE

PRR5L^ENSG00000135362.14

chr11:36462381:+

IGL@-ext^IGL.g@-ext

chr22:22919533:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1269:35941:29683,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2395:13580:16932

NO_LDAS

0.0019

1.9899

1.8256

"[""INTERCHROMOSOMAL[chr11--chr22]""]"

chr11:36462381-chr22:22919533

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PRR5L--IGL@-ext

0.5

0.0

INCL_NON_REF_SPLICE

PRR5L^ENSG00000135362.14

chr11:36462381:+

IGL@-ext^IGL.g@-ext

chr22:22906340:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1269:35941:29683,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2395:13580:16932

NO_LDAS

0.0019

1.9899

1.8256

"[""INTERCHROMOSOMAL[chr11--chr22]""]"

chr11:36462381-chr22:22906340

True

pair|recurrent

breakpoints

Blacklisted

FAIL

PRR5L--IGL@-ext

0.5

0.0

INCL_NON_REF_SPLICE

PRR5L^ENSG00000135362.14

chr11:36462381:+

IGL@-ext^IGL.g@-ext

chr22:22900974:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1269:35941:29683,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2395:13580:16932

NO_LDAS

0.0019

1.9899

1.8256

"[""INTERCHROMOSOMAL[chr11--chr22]""]"

chr11:36462381-chr22:22900974

True

pair|recurrent

breakpoints

Blacklisted

FAIL

PPP2R2B--IGL@-ext

2.0

0.0

INCL_NON_REF_SPLICE

PPP2R2B^ENSG00000156475.19

chr5:147081300:-

IGL@-ext^IGL.g@-ext

chr22:22900974:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1148:37559:24779,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1267:22228:26082

NO_LDAS

0.0077

1.9219

1.8256

"[""INTERCHROMOSOMAL[chr5--chr22]""]"

chr5:147081300-chr22:22900974

True

pair|recurrent

breakpoints

Blacklisted

FAIL

PPP1R1B--ZNF408

2.0

0.0

INCL_NON_REF_SPLICE

PPP1R1B^ENSG00000131771.14

chr17:39629230:+

ZNF408^ENSG00000175213.3

chr11:46705691:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1230:14858:20323,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1339:3225:8216

NO_LDAS

0.0077

1.7968

1.9329

"[""INTERCHROMOSOMAL[chr17--chr11]""]"

chr17:39629230-chr11:46705691

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

POLR2J4--UPK3BL1

1.0

0.0

INCL_NON_REF_SPLICE

POLR2J4^ENSG00000272655.2

chr7:44013593:-

UPK3BL1^ENSG00000267368.1

chr7:102640773:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2244:4875:5330,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2419:46385:14900

YES_LDAS

0.0039

1.9086

1.7465

"[""INTRACHROMOSOMAL[chr7:58.62Mb]""]"

chr7:44013593-chr7:102640773

False

Read

count

too

low:

FAIL

PLXNB3--AP1M2

2.0

0.0

INCL_NON_REF_SPLICE

PLXNB3^ENSG00000198753.12

chrX:153776135:+

AP1M2^ENSG00000129354.12

chr19:10574423:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:49127:1799,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2432:24016:2471

NO_LDAS

0.0077

1.6895

1.7968

"[""INTERCHROMOSOMAL[chrX--chr19]""]"

chrX:153776135-chr19:10574423

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PKD1P6--IGL@-ext

2.0

0.0

INCL_NON_REF_SPLICE

PKD1P6^ENSG00000250251.6

chr16:15133264:-

IGL@-ext^IGL.g@-ext

chr22:22895380:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2160:31693:2709,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2495:2205:9533

NO_LDAS

0.0077

1.9329

1.3383

"[""INTERCHROMOSOMAL[chr16--chr22]""]"

chr16:15133264-chr22:22895380

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PES1--CRACR2B

2.0

0.0

INCL_NON_REF_SPLICE

PES1^ENSG00000100029.18

chr22:30578932:-

CRACR2B^ENSG00000177685.17

chr11:828656:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1122:32082:19524,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1321:43270:10458

NO_LDAS

0.0077

1.5058

1.5546

"[""INTERCHROMOSOMAL[chr22--chr11]""]"

chr22:30578932-chr11:828656

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PDE4DIP--GRIP2

1.0

0.0

INCL_NON_REF_SPLICE

PDE4DIP^ENSG00000178104.19

chr1:148966644:+

GRIP2^ENSG00000144596.13

chr3:14556044:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2367:29331:28941,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2268:32551:1953

NO_LDAS

0.0039

1.7968

"[""INTERCHROMOSOMAL[chr1--chr3]""]"

chr1:148966644-chr3:14556044

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

PAX9--RBM47

2.0

0.0

ONLY_REF_SPLICE

PAX9^ENSG00000198807.13

chr14:36657900:+

RBM47^ENSG00000163694.15

chr4:40438924:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1208:25343:16960,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2473:17908:6381

YES_LDAS

0.0077

1.8256

"[""INTERCHROMOSOMAL[chr14--chr4]""]"

chr14:36657900-chr4:40438924

False

Read

count

too

low:

FAIL

PA2G4--P2RX5

2.0

0.0

INCL_NON_REF_SPLICE

PA2G4^ENSG00000170515.14

chr12:56107256:+

P2RX5^ENSG00000083454.22

chr17:3690244:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2414:26346:4013,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2461:46126:11369

NO_LDAS

0.0077

1.9086

1.5656

"[""INTERCHROMOSOMAL[chr12--chr17]""]"

chr12:56107256-chr17:3690244

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

OAZ2--SHARPIN

0.67

0.0

INCL_NON_REF_SPLICE

OAZ2^ENSG00000180304.14

chr15:64703235:-

SHARPIN^ENSG00000179526.17

chr8:144103740:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1185:7068:13443,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1365:46506:8441

NO_LDAS

0.0026

0.9183

0.8366

"[""INTERCHROMOSOMAL[chr15--chr8]""]"

chr15:64703235-chr8:144103740

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NEAT1--HNRNPC

2.0

0.0

INCL_NON_REF_SPLICE

NEAT1^ENSG00000245532.9

chr11:65444063:+

HNRNPC^ENSG00000092199.18

chr14:21234229:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1354:18604:3662,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1411:3662:7936

YES_LDAS

0.0077

1.9899

1.6402

"[""INTERCHROMOSOMAL[chr11--chr14]""]"

chr11:65444063-chr14:21234229

False

Read

count

too

low:

FAIL

MYL12A--AKAP6

2.0

0.0

INCL_NON_REF_SPLICE

MYL12A^ENSG00000101608.13

chr18:3255824:+

AKAP6^ENSG00000151320.11

chr14:32821606:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1323:51611:21038,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2410:10562:20561

NO_LDAS

0.0077

1.7465

1.9656

"[""INTERCHROMOSOMAL[chr18--chr14]""]"

chr18:3255824-chr14:32821606

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MMP15--RGS9

2.0

0.0

INCL_NON_REF_SPLICE

MMP15^ENSG00000102996.5

chr16:58045343:+

RGS9^ENSG00000108370.17

chr17:65101216:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1461:6485:20841,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1187:50389:22817

NO_LDAS

0.0077

1.8062

1.5656

"[""INTERCHROMOSOMAL[chr16--chr17]""]"

chr16:58045343-chr17:65101216

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MFN1--FBXL5

2.0

0.0

ONLY_REF_SPLICE

MFN1^ENSG00000171109.19

chr3:179347810:+

FBXL5^ENSG00000118564.15

chr4:15625977:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1128:8904:24415,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2289:35010:12938

NO_LDAS

0.0077

1.8295

1.4295

"[""INTERCHROMOSOMAL[chr3--chr4]""]"

chr3:179347810-chr4:15625977

False

Read

count

too

low:

FAIL

MFAP3L--CLCN3

2.0

0.0

INCL_NON_REF_SPLICE

MFAP3L^ENSG00000198948.12

chr4:170027164:-

CLCN3^ENSG00000109572.14

chr4:169706868:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1397:42510:12504,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1397:42518:12518

YES_LDAS

0.0077

1.9656

1.7819

"[""INTRACHROMOSOMAL[chr4:0.26Mb]""]"

chr4:170027164-chr4:169706868

False

Read

count

too

low:

FAIL

LUC7L3--GGNBP2

2.0

0.0

ONLY_REF_SPLICE

LUC7L3^ENSG00000108848.16

chr17:50719831:+

GGNBP2^ENSG00000278311.5

chr17:36554820:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:23587:9604,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1284:27090:11103

YES_LDAS

0.0077

1.8062

1.5656

"[""INTRACHROMOSOMAL[chr17:14.13Mb]""]"

chr17:50719831-chr17:36554820

False

Read

count

too

low:

FAIL

LRRC10B--PTP4A3

2.0

0.0

INCL_NON_REF_SPLICE

LRRC10B^ENSG00000204950.4

chr11:61508816:+

PTP4A3^ENSG00000184489.13

chr8:141417895:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2252:47744:13639,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2274:10862:6815

NO_LDAS

0.0077

0.971

1.4716

"[""INTERCHROMOSOMAL[chr11--chr8]""]"

chr11:61508816-chr8:141417895

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

LPCAT1--HOXA4

2.0

0.0

INCL_NON_REF_SPLICE

LPCAT1^ENSG00000153395.10

chr5:1501461:-

HOXA4^ENSG00000197576.14

chr7:27130388:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1111:49993:22467,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2191:1251:16343

NO_LDAS

0.0077

1.8295

1.3383

"[""INTERCHROMOSOMAL[chr5--chr7]""]"

chr5:1501461-chr7:27130388

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

LEPROT--LEPR

2.0

0.0

ONLY_REF_SPLICE

LEPROT^ENSG00000213625.9

chr1:65425378:+

LEPR^ENSG00000116678.20

chr1:65565546:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1155:5385:11761,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1295:2658:5106

YES_LDAS

0.0077

1.8256

1.9219

"[""GTEx_recurrent_StarF2019"",""ChimerSeq"",""INTRACHROMOSOMAL[chr1:0.09Mb]"",""NEIGHBORS[89682]""]"

chr1:65425378-chr1:65565546

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

LBH--RTN2

1.0

0.0

INCL_NON_REF_SPLICE

LBH^ENSG00000213626.13

chr2:30232437:+

RTN2^ENSG00000125744.12

chr19:45496995:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1290:17261:18655,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2460:21176:7754

NO_LDAS

0.0039

1.4716

0.9183

"[""INTERCHROMOSOMAL[chr2--chr19]""]"

chr2:30232437-chr19:45496995

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KRBOX1--GASK1A

2.0

0.0

ONLY_REF_SPLICE

KRBOX1^ENSG00000240747.8

chr3:42942071:+

GASK1A^ENSG00000144649.9

chr3:43032267:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1103:44427:19188,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2288:12763:13779

NO_LDAS

0.0077

1.7968

1.5656

"[""INTRACHROMOSOMAL[chr3:0.04Mb]"",""NEIGHBORS[36475]""]"

chr3:42942071-chr3:43032267

True

pair|recurrent

breakpoints

Blacklisted

FAIL

KMT2B--ZBTB44

0.5

0.0

INCL_NON_REF_SPLICE

KMT2B^ENSG00000272333.7

chr19:35722582:+

ZBTB44^ENSG00000196323.14

chr11:130230791:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1134:42380:10626,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2415:36369:24344

NO_LDAS

0.0019

1.7465

1.8892

"[""INTERCHROMOSOMAL[chr19--chr11]""]"

chr19:35722582-chr11:130230791

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KMT2B--IGL-@-ext

0.5

0.0

INCL_NON_REF_SPLICE

KMT2B^ENSG00000272333.7

chr19:35722581:+

IGL-@-ext^IGL-.g@-ext

chr22:22860684:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1134:42380:10626,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2415:36369:24344

NO_LDAS

0.0019

1.6895

1.9329

"[""INTERCHROMOSOMAL[chr19--chr22]""]"

chr19:35722581-chr22:22860684

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KMT2B--AAMDC

0.5

0.0

INCL_NON_REF_SPLICE

KMT2B^ENSG00000272333.7

chr19:35722582:+

AAMDC^ENSG00000087884.14

chr11:77900584:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1134:42380:10626,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2415:36369:24344

NO_LDAS

0.0019

1.7465

1.9329

"[""INTERCHROMOSOMAL[chr19--chr11]""]"

chr19:35722582-chr11:77900584

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KLLN--IGL@-ext

2.0

0.0

INCL_NON_REF_SPLICE

KLLN^ENSG00000227268.5

chr10:87860456:-

IGL@-ext^IGL.g@-ext

chr22:22899625:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2273:46191:21878,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1489:1186:23826

NO_LDAS

0.0077

1.8892

1.7968

"[""INTERCHROMOSOMAL[chr10--chr22]""]"

chr10:87860456-chr22:22899625

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KCNH5--NCOA3

1.0

0.0

INCL_NON_REF_SPLICE

KCNH5^ENSG00000140015.20

chr14:62950140:-

NCOA3^ENSG00000124151.19

chr20:47651078:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1172:38133:19160,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1249:2214:23532

NO_LDAS

0.0039

1.7819

1.5656

"[""INTERCHROMOSOMAL[chr14--chr20]""]"

chr14:62950140-chr20:47651078

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

ITGA9--CD46

2.0

0.0

ONLY_REF_SPLICE

ITGA9^ENSG00000144668.12

chr3:37542585:+

CD46^ENSG00000117335.20

chr1:207757014:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1110:25383:21290,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1271:51635:1238

YES_LDAS

0.0077

1.9219

"[""INTERCHROMOSOMAL[chr3--chr1]""]"

chr3:37542585-chr1:207757014

False

Read

count

too

low:

FAIL

IGL@-ext--INPP5D

2.0

0.0

INCL_NON_REF_SPLICE

IGL@-ext^IGL.g@-ext

chr22:22124423:+

INPP5D^ENSG00000168918.14

chr2:233204262:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1188:9017:2555,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2124:51198:22565

NO_LDAS

0.0077

1.8892

1.8323

"[""INTERCHROMOSOMAL[chr22--chr2]""]"

chr22:22124423-chr2:233204262

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

IGL-@-ext--LZTR1

2.0

0.0

INCL_NON_REF_SPLICE

IGL-@-ext^IGL-.g@-ext

chr22:22900974:-

LZTR1^ENSG00000099949.21

chr22:20990555:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1381:5692:26026,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2333:2804:29543

NO_LDAS

0.0077

1.8256

1.9656

"[""INTRACHROMOSOMAL[chr22:1.03Mb]""]"

chr22:22900974-chr22:20990555

True

pair|recurrent

breakpoints

Blacklisted

FAIL

IGL-@-ext--L3MBTL4

1.5

0.0

INCL_NON_REF_SPLICE

IGL-@-ext^IGL-.g@-ext

chr22:22922593:-

L3MBTL4^ENSG00000154655.16

chr18:5955552:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2107:30965:27399,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2481:7496:19258

NO_LDAS

0.0058

1.9086

1.7232

"[""INTERCHROMOSOMAL[chr22--chr18]""]"

chr22:22922593-chr18:5955552

True

pair|recurrent

breakpoints

Blacklisted

FAIL

IGL-@-ext--L3MBTL4

1.5

0.0

INCL_NON_REF_SPLICE

IGL-@-ext^IGL-.g@-ext

chr22:22906341:-

L3MBTL4^ENSG00000154655.16

chr18:5955552:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2107:30965:27399,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2275:28304:9646

NO_LDAS

0.0058

1.9086

1.7232

"[""INTERCHROMOSOMAL[chr22--chr18]""]"

chr22:22906341-chr18:5955552

True

pair|recurrent

breakpoints

Blacklisted

FAIL

HLA-C--RFPL1S

2.0

0.0

INCL_NON_REF_SPLICE

HLA-C^ENSG00000204525.17

chr6:31269489:-

RFPL1S^ENSG00000225465.10

chr22:29470603:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1204:22083:6353,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1109:52161:19804

NO_LDAS

0.0077

1.9656

1.6729

"[""INTERCHROMOSOMAL[chr6--chr22]""]"

chr6:31269489-chr22:29470603

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

GTF2A1--FKRP

1.46

0.0

INCL_NON_REF_SPLICE

GTF2A1^ENSG00000165417.12

chr14:81220931:-

FKRP^ENSG00000181027.11

chr19:46746069:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1209:46021:17240,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2371:31912:14718

NO_LDAS

0.0056

1.1589

1.4716

"[""INTERCHROMOSOMAL[chr14--chr19]""]"

chr14:81220931-chr19:46746069

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GPS1--AC091874.2

2.0

0.0

INCL_NON_REF_SPLICE

GPS1^ENSG00000169727.12

chr17:82051964:+

AC091874.2^ENSG00000249287.1

chr5:180970442:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2114:15335:12798,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1429:51490:22509

NO_LDAS

0.0077

1.8892

1.5628

"[""INTERCHROMOSOMAL[chr17--chr5]""]"

chr17:82051964-chr5:180970442

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GPR132--EPS15

2.0

0.0

ONLY_REF_SPLICE

GPR132^ENSG00000183484.12

chr14:105057938:-

EPS15^ENSG00000085832.17

chr1:51445045:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1227:7707:28450,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2113:31702:22145

NO_LDAS

0.0077

1.8295

1.9899

"[""INTERCHROMOSOMAL[chr14--chr1]""]"

chr14:105057938-chr1:51445045

True

pair|recurrent

breakpoints

Blacklisted

FAIL

FUBP3--C1RL

2.0

0.0

ONLY_REF_SPLICE

FUBP3^ENSG00000107164.16

chr9:130595588:+

C1RL^ENSG00000139178.11

chr12:7102087:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1102:30334:13443,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2442:38716:16806

YES_LDAS

0.0077

1.8892

"[""INTERCHROMOSOMAL[chr9--chr12]""]"

chr9:130595588-chr12:7102087

False

Read

count

too

low:

FAIL

EXTL3--SRP68

0.22

0.0

INCL_NON_REF_SPLICE

EXTL3^ENSG00000012232.9

chr8:28701640:+

SRP68^ENSG00000167881.15

chr17:76072466:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:33053:15293,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2130:37615:17030

NO_LDAS

0.0009

0.9183

"[""INTERCHROMOSOMAL[chr8--chr17]""]"

chr8:28701640-chr17:76072466

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EXTL3--SNX5

0.22

0.0

INCL_NON_REF_SPLICE

EXTL3^ENSG00000012232.9

chr8:28701640:+

SNX5^ENSG00000089006.17

chr20:17968498:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:33053:15293,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2130:37615:17030

NO_LDAS

0.0009

0.9183

"[""INTERCHROMOSOMAL[chr8--chr20]""]"

chr8:28701640-chr20:17968498

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EXTL3--SIX3

0.22

0.0

INCL_NON_REF_SPLICE

EXTL3^ENSG00000012232.9

chr8:28701640:+

SIX3^ENSG00000138083.5

chr2:44942292:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:33053:15293,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2130:37615:17030

NO_LDAS

0.0009

0.9183

"[""INTERCHROMOSOMAL[chr8--chr2]""]"

chr8:28701640-chr2:44942292

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EXTL3--NBPF26

0.22

0.0

INCL_NON_REF_SPLICE

EXTL3^ENSG00000012232.9

chr8:28701640:+

NBPF26^ENSG00000273136.7

chr1:120724130:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:33053:15293,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2130:37615:17030

NO_LDAS

0.0009

0.9183

"[""INTERCHROMOSOMAL[chr8--chr1]""]"

chr8:28701640-chr1:120724130

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EXTL3--GNAQ

0.22

0.0

INCL_NON_REF_SPLICE

EXTL3^ENSG00000012232.9

chr8:28701640:+

GNAQ^ENSG00000156052.11

chr9:78031608:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:33053:15293,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2130:37615:17030

NO_LDAS

0.0009

0.9183

"[""INTERCHROMOSOMAL[chr8--chr9]""]"

chr8:28701640-chr9:78031608

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EXTL3--FOXO3B

0.22

0.0

INCL_NON_REF_SPLICE

EXTL3^ENSG00000012232.9

chr8:28701640:+

FOXO3B^ENSG00000240445.6

chr17:18673055:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:33053:15293,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2130:37615:17030

NO_LDAS

0.0009

0.9183

"[""INTERCHROMOSOMAL[chr8--chr17]""]"

chr8:28701640-chr17:18673055

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ETNK2--APP

2.0

0.0

INCL_NON_REF_SPLICE

ETNK2^ENSG00000143845.15

chr1:204141505:-

APP^ENSG00000142192.21

chr21:25982357:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1122:41151:28898,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1288:5538:10318

NO_LDAS

0.0077

1.9329

1.9086

"[""INTERCHROMOSOMAL[chr1--chr21]""]"

chr1:204141505-chr21:25982357

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DNM2--OTX1

2.0

0.0

INCL_NON_REF_SPLICE

DNM2^ENSG00000079805.18

chr19:10829268:+

OTX1^ENSG00000115507.10

chr2:63051495:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1107:5668:18109,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1190:38667:10276

NO_LDAS

0.0077

1.5301

0.9056

"[""INTERCHROMOSOMAL[chr19--chr2]""]"

chr19:10829268-chr2:63051495

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DMD--MSN

2.0

0.0

ONLY_REF_SPLICE

DMD^ENSG00000198947.17

chrX:31203961:-

MSN^ENSG00000147065.17

chrX:65716818:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1208:32486:21430,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1296:22358:17899

YES_LDAS

0.0077

1.8892

1.8323

"[""INTRACHROMOSOMAL[chrX:32.25Mb]""]"

chrX:31203961-chrX:65716818

False

Read

count

too

low:

FAIL

CSNK1E--TPTEP2

2.0

0.0

ONLY_REF_SPLICE

CSNK1E^ENSG00000213923.13

chr22:38293255:-

TPTEP2^ENSG00000244627.5

chr22:38336706:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1195:3152:16778,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1197:43812:10697

YES_LDAS

0.0077

1.8892

1.6729

"[""INTRACHROMOSOMAL[chr22:0.02Mb]"",""LOCAL_REARRANGEMENT:-:[17678]""]"

chr22:38293255-chr22:38336706

True

pair|recurrent

breakpoints

Blacklisted

FAIL

COX10-AS1--FBXW4

2.0

0.0

ONLY_REF_SPLICE

COX10-AS1^ENSG00000236088.10

chr17:14034008:-

FBXW4^ENSG00000107829.15

chr10:101676436:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1135:24607:26166,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2212:50826:8665

YES_LDAS

0.0077

1.8892

1.9656

"[""INTERCHROMOSOMAL[chr17--chr10]""]"

chr17:14034008-chr10:101676436

False

Read

count

too

low:

FAIL

CLK3--RNF44

2.0

0.0

ONLY_REF_SPLICE

CLK3^ENSG00000179335.19

chr15:74620225:+

RNF44^ENSG00000146083.12

chr5:176532516:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1308:38076:1266,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1142:40091:18796

YES_LDAS

0.0077

1.7968

1.7465

"[""INTERCHROMOSOMAL[chr15--chr5]""]"

chr15:74620225-chr5:176532516

False

Read

count

too

low:

FAIL

CLASRP--ZNF503-AS2

1.0

0.0

INCL_NON_REF_SPLICE

CLASRP^ENSG00000104859.15

chr19:45067594:+

ZNF503-AS2^ENSG00000237149.5

chr10:75408336:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1146:3249:6661,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2354:52032:4895

NO_LDAS

0.0039

1.6402

0.9968

"[""INTERCHROMOSOMAL[chr19--chr10]""]"

chr19:45067594-chr10:75408336

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CLASRP--LRP3

1.0

0.0

INCL_NON_REF_SPLICE

CLASRP^ENSG00000104859.15

chr19:45067594:+

LRP3^ENSG00000130881.14

chr19:33194464:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1146:3249:6661,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2354:52032:4895

NO_LDAS

0.0039

1.6402

0.971

"[""INTRACHROMOSOMAL[chr19:11.83Mb]""]"

chr19:45067594-chr19:33194464

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CHCHD10--ID2

2.0

0.0

INCL_NON_REF_SPLICE

CHCHD10^ENSG00000250479.9

chr22:23767834:-

ID2^ENSG00000115738.10

chr2:8682033:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2390:12722:12196,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2185:19146:28142

NO_LDAS

0.0077

1.6402

1.231

"[""INTERCHROMOSOMAL[chr22--chr2]""]"

chr22:23767834-chr2:8682033

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CFP--POM121

0.67

0.0

ONLY_REF_SPLICE

CFP^ENSG00000126759.14

chrX:47627141:-

POM121^ENSG00000196313.11

chr7:72941837:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1416:2076:18613,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2343:34396:8987

NO_LDAS

0.0026

1.7232

1.9656

"[""INTERCHROMOSOMAL[chrX--chr7]""]"

chrX:47627141-chr7:72941837

False

Read

count

too

low:

FAIL

CDAN1--IGF2BP1

1.0

0.0

INCL_NON_REF_SPLICE

CDAN1^ENSG00000140326.13

chr15:42736480:-

IGF2BP1^ENSG00000159217.10

chr17:49051618:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1118:17034:24485,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1151:8168:3859

NO_LDAS

0.0039

1.2867

1.6402

"[""INTERCHROMOSOMAL[chr15--chr17]""]"

chr15:42736480-chr17:49051618

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CDAN1--IFITM10

1.0

0.0

INCL_NON_REF_SPLICE

CDAN1^ENSG00000140326.13

chr15:42736480:-

IFITM10^ENSG00000244242.2

chr11:1732851:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1118:17034:24485,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1151:8168:3859

NO_LDAS

0.0039

1.2867

1.7819

"[""INTERCHROMOSOMAL[chr15--chr11]""]"

chr15:42736480-chr11:1732851

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CCND2--CCND1

2.0

0.0

ONLY_REF_SPLICE

CCND2^ENSG00000118971.9

chr12:4274235:+

CCND1^ENSG00000110092.4

chr11:69643031:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1180:27090:6479,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2111:51708:18880

NO_LDAS

0.0077

1.9219

1.8892

"[""TCGA_StarF2019"",""CCLE_StarF2019"",""INTERCHROMOSOMAL[chr12--chr11]""]"

chr12:4274235-chr11:69643031

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

C8orf88--OLIG1

0.75

0.0

INCL_NON_REF_SPLICE

C8orf88^ENSG00000253250.3

chr8:90985236:-

OLIG1^ENSG00000184221.13

chr21:33070363:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2125:25310:23826,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1180:14494:19468

NO_LDAS

0.0029

1.053

1.5546

"[""INTERCHROMOSOMAL[chr8--chr21]""]"

chr8:90985236-chr21:33070363

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

BCKDHB--AL359715.4

2.0

0.0

INCL_NON_REF_SPLICE

BCKDHB^ENSG00000083123.15

chr6:80273221:+

AL359715.4^ENSG00000279022.1

chr6:80440685:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1170:23579:22509,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1382:16015:7810

YES_LDAS

0.0077

1.9899

1.9656

"[""INTRACHROMOSOMAL[chr6:0.09Mb]"",""NEIGHBORS[94460]""]"

chr6:80273221-chr6:80440685

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

ARF1--EFHB

2.0

0.0

INCL_NON_REF_SPLICE

ARF1^ENSG00000143761.16

chr1:228097715:+

EFHB^ENSG00000163576.18

chr3:19933369:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1137:35399:1869,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1282:11339:16189

NO_LDAS

0.0077

1.9086

1.6402

"[""INTERCHROMOSOMAL[chr1--chr3]""]"

chr1:228097715-chr3:19933369

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ANXA6--FBN3

2.0

0.0

INCL_NON_REF_SPLICE

ANXA6^ENSG00000197043.14

chr5:151124286:-

FBN3^ENSG00000142449.13

chr19:8138312:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1105:21023:23826,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:15376:2219

NO_LDAS

0.0077

1.9329

1.8892

"[""INTERCHROMOSOMAL[chr5--chr19]""]"

chr5:151124286-chr19:8138312

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

ANPEP--NCOA3

1.0

0.0

INCL_NON_REF_SPLICE

ANPEP^ENSG00000166825.15

chr15:89804827:-

NCOA3^ENSG00000124151.19

chr20:47651078:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1172:38133:19160,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1249:2214:23532

NO_LDAS

0.0039

1.7819

1.5656

"[""INTERCHROMOSOMAL[chr15--chr20]""]"

chr15:89804827-chr20:47651078

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AL365356.2--RPL23AP42

2.0

0.0

INCL_NON_REF_SPLICE

AL365356.2^ENSG00000228685.1

chr10:5625040:+

RPL23AP42^ENSG00000234851.4

chr3:161429486:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1131:3330:17787,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1423:20028:17675

NO_LDAS

0.0077

1.2729

1.8062

"[""INTERCHROMOSOMAL[chr10--chr3]""]"

chr10:5625040-chr3:161429486

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

AL357972.1--PIGL

2.0

0.0

ONLY_REF_SPLICE

AL357972.1^ENSG00000286109.1

chr1:233724923:+

PIGL^ENSG00000108474.17

chr17:16299888:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1129:7933:8188,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1247:22487:15797

YES_LDAS

0.0077

1.3383

1.9899

"[""INTERCHROMOSOMAL[chr1--chr17]""]"

chr1:233724923-chr17:16299888

False

Read

count

too

low:

FAIL

AL157832.1--ADCY9

2.0

0.0

INCL_NON_REF_SPLICE

AL157832.1^ENSG00000227374.1

chr10:129769077:+

ADCY9^ENSG00000162104.10

chr16:3966122:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1235:49144:20659,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1278:47064:8174

NO_LDAS

0.0077

1.9086

1.7465

"[""INTERCHROMOSOMAL[chr10--chr16]""]"

chr10:129769077-chr16:3966122

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AL138963.3--AC013268.4

0.67

0.0

INCL_NON_REF_SPLICE

AL138963.3^ENSG00000273149.1

chr13:45340783:+

AC013268.4^ENSG00000283283.2

chr2:110026048:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1121:40552:12700,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1217:9713:27385

NO_LDAS

0.0026

1.9656

1.1589

"[""INTERCHROMOSOMAL[chr13--chr2]""]"

chr13:45340783-chr2:110026048

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AGAP12P--AC022400.4

0.67

0.0

INCL_NON_REF_SPLICE

AGAP12P^ENSG00000265018.6

chr10:48025897:-

AC022400.4^ENSG00000272140.2

chr10:73713332:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1104:28854:24639,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1221:15797:28786

YES_LDAS

0.0026

1.7465

1.9086

"[""INTRACHROMOSOMAL[chr10:25.67Mb]""]"

chr10:48025897-chr10:73713332

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

AC099778.1--NEXMIF

2.0

0.0

INCL_NON_REF_SPLICE

AC099778.1^ENSG00000260236.1

chr3:47380520:-

NEXMIF^ENSG00000050030.16

chrX:74925426:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2126:6598:24288,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2407:17843:6521

NO_LDAS

0.0077

1.9329

1.3996

"[""INTERCHROMOSOMAL[chr3--chrX]""]"

chr3:47380520-chrX:74925426

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC099654.11--AL627309.5

0.33

0.0

ONLY_REF_SPLICE

AC099654.11^ENSG00000286436.1

chr7:57148471:+

AL627309.5^ENSG00000241860.7

chr1:173862:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1309:26314:2780,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2181:24704:5512

NO_LDAS

0.0013

1.9329

1.8892

"[""INTERCHROMOSOMAL[chr7--chr1]""]"

chr7:57148471-chr1:173862

False

Read

count

too

low:

FAIL

AC091390.3--ZCCHC8

0.67

0.0

INCL_NON_REF_SPLICE

AC091390.3^ENSG00000239969.5

chr7:102364411:+

ZCCHC8^ENSG00000033030.15

chr12:122474046:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:34129:27273,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1273:27883:15054

NO_LDAS

0.0026

1.5058

1.7968

"[""INTERCHROMOSOMAL[chr7--chr12]""]"

chr7:102364411-chr12:122474046

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC091390.3--PLEKHB1

0.67

0.0

INCL_NON_REF_SPLICE

AC091390.3^ENSG00000239969.5

chr7:102364411:+

PLEKHB1^ENSG00000021300.14

chr11:73655898:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:34129:27273,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1273:27883:15054

NO_LDAS

0.0026

1.5058

1.8295

"[""INTERCHROMOSOMAL[chr7--chr11]""]"

chr7:102364411-chr11:73655898

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC091390.3--HAMP

0.67

0.0

INCL_NON_REF_SPLICE

AC091390.3^ENSG00000239969.5

chr7:102364411:+

HAMP^ENSG00000105697.9

chr19:35284593:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:34129:27273,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1273:27883:15054

NO_LDAS

0.0026

1.5058

1.7232

"[""INTERCHROMOSOMAL[chr7--chr19]""]"

chr7:102364411-chr19:35284593

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC016629.1--RPL23AP53

2.0

0.0

ONLY_REF_SPLICE

AC016629.1^ENSG00000269032.1

chr19:58586356:+

RPL23AP53^ENSG00000223508.5

chr8:219417:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1176:13669:11173,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2129:16023:13541

YES_LDAS

0.0077

1.7819

1.5301

"[""INTERCHROMOSOMAL[chr19--chr8]""]"

chr19:58586356-chr8:219417

False

Read

count

too

low:

FAIL

AC007342.2--DMPK

2.0

0.0

INCL_NON_REF_SPLICE

AC007342.2^ENSG00000259962.1

chr16:53362013:-

DMPK^ENSG00000104936.19

chr19:45771852:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1107:42380:1603,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1310:19979:4419

NO_LDAS

0.0077

1.6402

1.6729

"[""INTERCHROMOSOMAL[chr16--chr19]""]"

chr16:53362013-chr19:45771852

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ABI2--IGL@-ext

0.5

0.0

INCL_NON_REF_SPLICE

ABI2^ENSG00000138443.17

chr2:203328326:+

IGL@-ext^IGL.g@-ext

chr22:22922595:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1455:5749:3957,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1438:39654:20281

NO_LDAS

0.0019

1.7819

1.8892

"[""INTERCHROMOSOMAL[chr2--chr22]""]"

chr2:203328326-chr22:22922595

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ABI2--IGL@-ext

0.5

0.0

INCL_NON_REF_SPLICE

ABI2^ENSG00000138443.17

chr2:203328326:+

IGL@-ext^IGL.g@-ext

chr22:22919536:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1455:5749:3957,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1438:39654:20281

NO_LDAS

0.0019

1.7819

1.8892

"[""INTERCHROMOSOMAL[chr2--chr22]""]"

chr2:203328326-chr22:22919536

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ABI2--IGL@-ext

0.5

0.0

INCL_NON_REF_SPLICE

ABI2^ENSG00000138443.17

chr2:203328326:+

IGL@-ext^IGL.g@-ext

chr22:22906343:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1455:5749:3957,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1438:39654:20281

NO_LDAS

0.0019

1.7819

1.8892

"[""INTERCHROMOSOMAL[chr2--chr22]""]"

chr2:203328326-chr22:22906343

True

pair|recurrent

breakpoints

Blacklisted

FAIL

ABI2--IGL@-ext

0.5

0.0

INCL_NON_REF_SPLICE

ABI2^ENSG00000138443.17

chr2:203328326:+

IGL@-ext^IGL.g@-ext

chr22:22900977:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1455:5749:3957,&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1438:39654:20281

NO_LDAS

0.0019

1.7819

1.8892

"[""INTERCHROMOSOMAL[chr2--chr22]""]"

chr2:203328326-chr22:22900977

True

pair|recurrent

breakpoints

Blacklisted

FAIL

ZSCAN9--SALL2

1.0

0.0

INCL_NON_REF_SPLICE

ZSCAN9^ENSG00000137185.13

chr6:28230390:+

SALL2^ENSG00000165821.12

chr14:21525377:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2496:16824:13527

NO_LDAS

0.0039

1.9329

1.8892

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr6--chr14]""]"

chr6:28230390-chr14:21525377

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

ZNF880--AC010624.4

0.25

0.0

INCL_NON_REF_SPLICE

ZNF880^ENSG00000221923.9

chr19:52384280:+

AC010624.4^ENSG00000269540.1

chr19:50058974:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1204:13515:28758

NO_LDAS

0.001

1.6729

1.9086

"[""INTRACHROMOSOMAL[chr19:2.31Mb]""]"

chr19:52384280-chr19:50058974

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ZNF827--PIK3C2B

1.0

0.0

ONLY_REF_SPLICE

ZNF827^ENSG00000151612.18

chr4:145938365:-

PIK3C2B^ENSG00000133056.13

chr1:204433425:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2153:42494:21528

YES_LDAS

0.0039

1.7232

1.7056

"[""INTERCHROMOSOMAL[chr4--chr1]""]"

chr4:145938365-chr1:204433425

False

Read

count

too

low:

FAIL

ZNF800--KLF3

1.0

0.0

INCL_NON_REF_SPLICE

ZNF800^ENSG00000048405.10

chr7:127391497:-

KLF3^ENSG00000109787.13

chr4:38689918:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1314:29323:18894

NO_LDAS

0.0039

1.9656

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr7--chr4]""]"

chr7:127391497-chr4:38689918

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

ZNF776--ZNF823

1.0

0.0

ONLY_REF_SPLICE

ZNF776^ENSG00000152443.13

chr19:57747091:+

ZNF823^ENSG00000197933.13

chr19:11725327:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1127:50373:4209

YES_LDAS

0.0039

1.6895

1.9329

"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr19:46.01Mb]""]"

chr19:57747091-chr19:11725327

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

ZNF750--JMJD4

0.5

0.0

INCL_NON_REF_SPLICE

ZNF750^ENSG00000141579.7

chr17:82832020:-

JMJD4^ENSG00000081692.13

chr1:227730533:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1152:42566:19300

NO_LDAS

0.0019

1.7465

"[""INTERCHROMOSOMAL[chr17--chr1]""]"

chr17:82832020-chr1:227730533

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ZNF70--EXOC3L1

1.0

0.0

INCL_NON_REF_SPLICE

ZNF70^ENSG00000187792.5

chr22:23742510:-

EXOC3L1^ENSG00000179044.16

chr16:67188892:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2169:25804:11565

NO_LDAS

0.0039

1.8892

"[""INTERCHROMOSOMAL[chr22--chr16]""]"

chr22:23742510-chr16:67188892

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ZNF675--KRTCAP2

0.5

0.0

INCL_NON_REF_SPLICE

ZNF675^ENSG00000197372.10

chr19:23526127:-

KRTCAP2^ENSG00000163463.13

chr1:155172892:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1116:38101:8511

NO_LDAS

0.0019

1.7819

1.7232

"[""INTERCHROMOSOMAL[chr19--chr1]""]"

chr19:23526127-chr1:155172892

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ZNF580--RBM10

1.0

0.0

INCL_NON_REF_SPLICE

ZNF580^ENSG00000213015.9

chr19:55635115:+

RBM10^ENSG00000182872.16

chrX:47147357:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1170:39694:20351

YES_LDAS

0.0039

1.9086

1.9329

"[""INTERCHROMOSOMAL[chr19--chrX]""]"

chr19:55635115-chrX:47147357

False

Read

count

too

low:

FAIL

ZNF528--AC010332.1

1.0

0.0

ONLY_REF_SPLICE

ZNF528^ENSG00000167555.14

chr19:52406643:+

AC010332.1^ENSG00000277977.1

chr19:52392659:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1202:1307:20813

YES_LDAS

0.0039

1.8323

1.8892

"[""INTRACHROMOSOMAL[chr19:0.01Mb]"",""LOCAL_REARRANGEMENT:+:[5094]""]"

chr19:52406643-chr19:52392659

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

ZNF467--CCNI

1.0

0.0

INCL_NON_REF_SPLICE

ZNF467^ENSG00000181444.13

chr7:149765149:-

CCNI^ENSG00000118816.11

chr4:77075747:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2160:17633:28744

NO_LDAS

0.0039

1.2729

1.5628

"[""INTERCHROMOSOMAL[chr7--chr4]""]"

chr7:149765149-chr4:77075747

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ZNF37BP--GTF2I

1.0

0.0

ONLY_REF_SPLICE

ZNF37BP^ENSG00000234420.7

chr10:42525540:-

GTF2I^ENSG00000263001.7

chr7:74689124:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1341:14243:12560

NO_LDAS

0.0039

1.9329

"[""INTERCHROMOSOMAL[chr10--chr7]""]"

chr10:42525540-chr7:74689124

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

ZNF358--RNPEPL1

1.0

0.0

INCL_NON_REF_SPLICE

ZNF358^ENSG00000198816.7

chr19:7516249:+

RNPEPL1^ENSG00000142327.13

chr2:240568629:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1417:29428:12294

NO_LDAS

0.0039

1.1589

1.231

"[""INTERCHROMOSOMAL[chr19--chr2]""]"

chr19:7516249-chr2:240568629

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ZNF316--ZNF497

1.0

0.0

INCL_NON_REF_SPLICE

ZNF316^ENSG00000205903.7

chr7:6652749:+

ZNF497^ENSG00000174586.11

chr19:58356678:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2203:17253:28366

YES_LDAS

0.0039

1.9329

1.4566

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr7--chr19]""]"

chr7:6652749-chr19:58356678

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

ZNF251--SNX27

1.0

0.0

ONLY_REF_SPLICE

ZNF251^ENSG00000198169.9

chr8:144753683:-

SNX27^ENSG00000143376.14

chr1:151638888:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1363:51417:14508

YES_LDAS

0.0039

1.7465

1.9656

"[""INTERCHROMOSOMAL[chr8--chr1]""]"

chr8:144753683-chr1:151638888

False

Read

count

too

low:

FAIL

ZHX3--ATG2A

1.0

0.0

INCL_NON_REF_SPLICE

ZHX3^ENSG00000174306.21

chr20:41204412:-

ATG2A^ENSG00000110046.13

chr11:64907292:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2133:44063:16484

NO_LDAS

0.0039

1.8892

1.7232

"[""INTERCHROMOSOMAL[chr20--chr11]""]"

chr20:41204412-chr11:64907292

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ZFX--KLHL15

1.0

0.0

ONLY_REF_SPLICE

ZFX^ENSG00000005889.16

chrX:24179770:+

KLHL15^ENSG00000174010.9

chrX:24006700:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2179:1372:28660

YES_LDAS

0.0039

1.7465

1.8892

"[""DEEPEST2019"",""TumorFusionsNAR2018"",""ChimerSeq"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chrX:0.12Mb]""]"

chrX:24179770-chrX:24006700

False

Read

count

too

low:

FAIL

ZFP41--GLI4

1.0

0.0

ONLY_REF_SPLICE

ZFP41^ENSG00000181638.20

chr8:143251340:+

GLI4^ENSG00000250571.7

chr8:143274704:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2252:49370:6143

YES_LDAS

0.0039

1.8892

1.6729

"[""ConjoinG"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr8:0.00Mb]"",""NEIGHBORS[4728]""]"

chr8:143251340-chr8:143274704

True

pair|recurrent

breakpoints

Blacklisted

FAIL

ZEB1--ZNF438

1.0

0.0

ONLY_REF_SPLICE

ZEB1^ENSG00000148516.22

chr10:31461237:+

ZNF438^ENSG00000183621.15

chr10:30857778:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1115:28538:25634

NO_LDAS

0.0039

1.7968

1.8062

"[""DEEPEST2019"",""TumorFusionsNAR2018"",""HGNC_GENEFAM"",""ChimerSeq"",""INTRACHROMOSOMAL[chr10:0.29Mb]""]"

chr10:31461237-chr10:30857778

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

ZC3H7B--PRKCZ

0.5

0.0

INCL_NON_REF_SPLICE

ZC3H7B^ENSG00000100403.12

chr22:41341150:+

PRKCZ^ENSG00000067606.17

chr1:2116245:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2157:22600:26110

NO_LDAS

0.0019

1.7968

1.8256

"[""INTERCHROMOSOMAL[chr22--chr1]""]"

chr22:41341150-chr1:2116245

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ZC3H7B--C1orf109

0.5

0.0

INCL_NON_REF_SPLICE

ZC3H7B^ENSG00000100403.12

chr22:41341150:+

C1orf109^ENSG00000116922.14

chr1:37683955:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2157:22600:26110

NO_LDAS

0.0019

1.7968

1.9329

"[""INTERCHROMOSOMAL[chr22--chr1]""]"

chr22:41341150-chr1:37683955

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ZC3H4--TM9SF2

1.0

0.0

INCL_NON_REF_SPLICE

ZC3H4^ENSG00000130749.10

chr19:47064624:-

TM9SF2^ENSG00000125304.10

chr13:99520036:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2275:22552:24120

NO_LDAS

0.0039

1.8892

1.7232

"[""INTERCHROMOSOMAL[chr19--chr13]""]"

chr19:47064624-chr13:99520036

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ZBTB38--ATL3

1.0

0.0

ONLY_REF_SPLICE

ZBTB38^ENSG00000177311.11

chr3:141438365:+

ATL3^ENSG00000184743.13

chr11:63659252:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1142:32616:15909

NO_LDAS

0.0039

1.9329

1.9086

"[""INTERCHROMOSOMAL[chr3--chr11]""]"

chr3:141438365-chr11:63659252

False

Read

count

too

low:

FAIL

YWHAG--DDX24

1.0

0.0

INCL_NON_REF_SPLICE

YWHAG^ENSG00000170027.7

chr7:76327665:-

DDX24^ENSG00000089737.17

chr14:94051462:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1451:45713:1490

NO_LDAS

0.0039

0.6998

1.7819

"[""INTERCHROMOSOMAL[chr7--chr14]""]"

chr7:76327665-chr14:94051462

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

YWHAE--NR2F2-AS1

1.0

0.0

INCL_NON_REF_SPLICE

YWHAE^ENSG00000108953.17

chr17:1400047:-

NR2F2-AS1^ENSG00000247809.9

chr15:96110365:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1150:13192:11719

NO_LDAS

0.0039

1.9329

1.8256

"[""INTERCHROMOSOMAL[chr17--chr15]""]"

chr17:1400047-chr15:96110365

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

XPNPEP1--KCNA3

1.0

0.0

INCL_NON_REF_SPLICE

XPNPEP1^ENSG00000108039.18

chr10:109892485:-

KCNA3^ENSG00000177272.9

chr1:110673523:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1162:44322:6199

NO_LDAS

0.0039

1.8323

1.8892

"[""INTERCHROMOSOMAL[chr10--chr1]""]"

chr10:109892485-chr1:110673523

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

XPC-AS1--KRR1

1.0

0.0

ONLY_REF_SPLICE

XPC-AS1^ENSG00000228242.6

chr3:14149602:+

KRR1^ENSG00000111615.14

chr12:75508446:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1401:33287:7460

NO_LDAS

0.0039

1.9656

1.8892

"[""INTERCHROMOSOMAL[chr3--chr12]""]"

chr3:14149602-chr12:75508446

False

Read

count

too

low:

FAIL

WWP2--ANKRD9

1.0

0.0

INCL_NON_REF_SPLICE

WWP2^ENSG00000198373.13

chr16:69888121:+

ANKRD9^ENSG00000156381.9

chr14:102504199:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1324:37648:18151

NO_LDAS

0.0039

1.9329

1.7465

"[""INTERCHROMOSOMAL[chr16--chr14]""]"

chr16:69888121-chr14:102504199

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

WWC1--FAT4

1.0

0.0

INCL_NON_REF_SPLICE

WWC1^ENSG00000113645.15

chr5:168397800:+

FAT4^ENSG00000196159.14

chr4:125415352:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1287:42170:23602

NO_LDAS

0.0039

1.9086

1.7819

"[""INTERCHROMOSOMAL[chr5--chr4]""]"

chr5:168397800-chr4:125415352

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

WTAP--BTN2A3P

1.0

0.0

INCL_NON_REF_SPLICE

WTAP^ENSG00000146457.16

chr6:159727703:+

BTN2A3P^ENSG00000124549.14

chr6:26429982:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2277:12464:4069

YES_LDAS

0.0039

1.9329

1.7465

"[""INTRACHROMOSOMAL[chr6:133.29Mb]""]"

chr6:159727703-chr6:26429982

False

Read

count

too

low:

FAIL

WDTC1--PDX1

1.0

0.0

INCL_NON_REF_SPLICE

WDTC1^ENSG00000142784.16

chr1:27287861:+

PDX1^ENSG00000139515.6

chr13:27926006:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1381:27155:1378

NO_LDAS

0.0039

1.8892

1.9329

"[""INTERCHROMOSOMAL[chr1--chr13]""]"

chr1:27287861-chr13:27926006

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

WDTC1--AC084030.1

1.0

0.0

INCL_NON_REF_SPLICE

WDTC1^ENSG00000142784.16

chr1:27307366:+

AC084030.1^ENSG00000232328.3

chr2:236754361:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2434:22139:18698

NO_LDAS

0.0039

1.8892

1.6895

"[""INTERCHROMOSOMAL[chr1--chr2]""]"

chr1:27307366-chr2:236754361

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

WASH2P--KDELR3

0.12

0.0

ONLY_REF_SPLICE

WASH2P^ENSG00000146556.14

chr2:113598466:+

KDELR3^ENSG00000100196.11

chr22:38474523:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2216:1922:19188

NO_LDAS

0.0005

1.8892

1.9656

"[""INTERCHROMOSOMAL[chr2--chr22]""]"

chr2:113598466-chr22:38474523

True

pair|recurrent

breakpoints

Blacklisted

FAIL

WARS1--SPTBN1

1.0

0.0

ONLY_REF_SPLICE

WARS1^ENSG00000140105.18

chr14:100360554:-

SPTBN1^ENSG00000115306.16

chr2:54637713:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1104:22358:26278

YES_LDAS

0.0039

1.7819

1.7968

"[""INTERCHROMOSOMAL[chr14--chr2]""]"

chr14:100360554-chr2:54637713

False

Read

count

too

low:

FAIL

VWF--ANO2

1.0

0.0

ONLY_REF_SPLICE

VWF^ENSG00000110799.14

chr12:6095460:-

ANO2^ENSG00000047617.15

chr12:5832603:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1292:10805:15741

YES_LDAS

0.0039

1.5628

1.8295

"[""INTRACHROMOSOMAL[chr12:0.00Mb]"",""NEIGHBORS[2645]""]"

chr12:6095460-chr12:5832603

False

Read

count

too

low:

FAIL

VWA7--SLC39A11

1.0

0.0

ONLY_REF_SPLICE

VWA7^ENSG00000204396.11

chr6:31767362:-

SLC39A11^ENSG00000133195.11

chr17:72649268:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1283:30545:27371

NO_LDAS

0.0039

1.6402

1.9086

"[""INTERCHROMOSOMAL[chr6--chr17]""]"

chr6:31767362-chr17:72649268

False

Read

count

too

low:

FAIL

VTI1A--AL158212.1

1.0

0.0

ONLY_REF_SPLICE

VTI1A^ENSG00000151532.14

chr10:112668998:+

AL158212.1^ENSG00000225292.2

chr10:112888735:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1111:39225:27553

YES_LDAS

0.0039

1.7465

1.8892

"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr10:0.07Mb]"",""NEIGHBORS[69991]""]"

chr10:112668998-chr10:112888735

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

VPS45--PLEKHO1

1.0

0.0

ONLY_REF_SPLICE

VPS45^ENSG00000136631.15

chr1:150110627:+

PLEKHO1^ENSG00000023902.14

chr1:150150912:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2190:38513:10402

YES_LDAS

0.0039

1.4566

1.8892

"[""Babiceanu_Normal"",""INTRACHROMOSOMAL[chr1:0.00Mb]"",""NEIGHBORS[3854]""]"

chr1:150110627-chr1:150150912

True

pair|recurrent

breakpoints

Blacklisted

FAIL

VPS37B--TMEM254-AS1

1.0

0.0

INCL_NON_REF_SPLICE

VPS37B^ENSG00000139722.7

chr12:122895952:-

TMEM254-AS1^ENSG00000230091.6

chr10:80049136:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1490:33271:13793

NO_LDAS

0.0039

1.5628

1.8892

"[""INTERCHROMOSOMAL[chr12--chr10]""]"

chr12:122895952-chr10:80049136

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

VN2R17P--CBX6

0.5

0.0

INCL_NON_REF_SPLICE

VN2R17P^ENSG00000213014.3

chr19:56317195:-

CBX6^ENSG00000183741.12

chr22:38871757:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1113:51263:1575

NO_LDAS

0.0019

1.7819

1.9656

"[""INTERCHROMOSOMAL[chr19--chr22]""]"

chr19:56317195-chr22:38871757

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

VMP1--RFPL3S

1.0

0.0

INCL_NON_REF_SPLICE

VMP1^ENSG00000062716.13

chr17:59839911:+

RFPL3S^ENSG00000205853.12

chr22:32363904:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2296:14437:9954

NO_LDAS

0.0039

1.4256

1.5058

"[""INTERCHROMOSOMAL[chr17--chr22]""]"

chr17:59839911-chr22:32363904

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

VASP--KIF13B

1.0

0.0

ONLY_REF_SPLICE

VASP^ENSG00000125753.14

chr19:45517834:+

KIF13B^ENSG00000197892.13

chr8:29177578:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1285:23636:29193

NO_LDAS

0.0039

1.5301

1.7968

"[""INTERCHROMOSOMAL[chr19--chr8]""]"

chr19:45517834-chr8:29177578

False

Read

count

too

low:

FAIL

USP42--CDK5R2

1.0

0.0

INCL_NON_REF_SPLICE

USP42^ENSG00000106346.11

chr7:6154585:+

CDK5R2^ENSG00000171450.6

chr2:218961803:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2156:49993:14816

NO_LDAS

0.0039

1.8323

1.3383

"[""INTERCHROMOSOMAL[chr7--chr2]""]"

chr7:6154585-chr2:218961803

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

USP27X--CHD2

1.0

0.0

INCL_NON_REF_SPLICE

USP27X^ENSG00000273820.2

chrX:49881959:+

CHD2^ENSG00000173575.22

chr15:92985567:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1164:19243:14578

YES_LDAS

0.0039

1.053

1.6895

"[""INTERCHROMOSOMAL[chrX--chr15]""]"

chrX:49881959-chr15:92985567

False

Read

count

too

low:

FAIL

UQCRH--TSPOAP1

1.0

0.0

INCL_NON_REF_SPLICE

UQCRH^ENSG00000173660.12

chr1:46303820:+

TSPOAP1^ENSG00000005379.17

chr17:58309266:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1142:23692:10234

NO_LDAS

0.0039

1.7968

0.9968

"[""INTERCHROMOSOMAL[chr1--chr17]""]"

chr1:46303820-chr17:58309266

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

UQCRH--LRRN3

1.0

0.0

INCL_NON_REF_SPLICE

UQCRH^ENSG00000173660.12

chr1:46303820:+

LRRN3^ENSG00000173114.13

chr7:111099895:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1217:19777:1238

NO_LDAS

0.0039

1.7968

0.9183

"[""INTERCHROMOSOMAL[chr1--chr7]""]"

chr1:46303820-chr7:111099895

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

UQCRH--AL355337.1

1.0

0.0

INCL_NON_REF_SPLICE

UQCRH^ENSG00000173660.12

chr1:46309127:+

AL355337.1^ENSG00000287084.1

chr6:142680229:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2444:48383:19734

NO_LDAS

0.0039

1.5058

1.3996

"[""INTERCHROMOSOMAL[chr1--chr6]""]"

chr1:46309127-chr6:142680229

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

UPK3BL2--AC004980.3

0.2

0.0

INCL_NON_REF_SPLICE

UPK3BL2^ENSG00000284981.1

chr7:102541093:-

AC004980.3^ENSG00000230305.2

chr7:76527766:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2352:32187:23406

YES_LDAS

0.0008

1.6729

1.7465

"[""INTRACHROMOSOMAL[chr7:26.01Mb]""]"

chr7:102541093-chr7:76527766

False

Read

count

too

low:

FAIL

UHRF2--ATP13A2

1.0

0.0

INCL_NON_REF_SPLICE

UHRF2^ENSG00000147854.17

chr9:6506261:+

ATP13A2^ENSG00000159363.19

chr1:16990228:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2366:12666:25437

NO_LDAS

0.0039

1.4295

1.9899

"[""INTERCHROMOSOMAL[chr9--chr1]""]"

chr9:6506261-chr1:16990228

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

UBN2--SFTA3

0.5

0.0

INCL_NON_REF_SPLICE

UBN2^ENSG00000157741.15

chr7:139279364:+

SFTA3^ENSG00000229415.10

chr14:36473418:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1213:50721:3718

NO_LDAS

0.0019

1.7232

1.8256

"[""INTERCHROMOSOMAL[chr7--chr14]""]"

chr7:139279364-chr14:36473418

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

UBN2--SALL4P2

0.5

0.0

INCL_NON_REF_SPLICE

UBN2^ENSG00000157741.15

chr7:139279364:+

SALL4P2^ENSG00000238040.1

chrX:129871361:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1213:50721:3718

NO_LDAS

0.0019

1.7232

1.9086

"[""INTERCHROMOSOMAL[chr7--chrX]""]"

chr7:139279364-chrX:129871361

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

UBE2G2--ADGRB1

1.0

0.0

INCL_NON_REF_SPLICE

UBE2G2^ENSG00000184787.19

chr21:44768826:-

ADGRB1^ENSG00000181790.11

chr8:142510932:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2443:1607:12364

NO_LDAS

0.0039

1.8892

1.3753

"[""INTERCHROMOSOMAL[chr21--chr8]""]"

chr21:44768826-chr8:142510932

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TXNDC15--CISD2

0.5

0.0

INCL_NON_REF_SPLICE

TXNDC15^ENSG00000113621.15

chr5:134874536:+

CISD2^ENSG00000145354.12

chr4:102869314:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1423:4576:20449

NO_LDAS

0.0019

1.5546

"[""INTERCHROMOSOMAL[chr5--chr4]""]"

chr5:134874536-chr4:102869314

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TXNDC15--AXIN1

0.5

0.0

INCL_NON_REF_SPLICE

TXNDC15^ENSG00000113621.15

chr5:134874536:+

AXIN1^ENSG00000103126.15

chr16:289594:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1423:4576:20449

NO_LDAS

0.0019

1.5546

"[""INTERCHROMOSOMAL[chr5--chr16]""]"

chr5:134874536-chr16:289594

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TVP23C--CDRT4

1.0

0.0

INCL_NON_REF_SPLICE

TVP23C^ENSG00000175106.17

chr17:15503098:-

CDRT4^ENSG00000239704.11

chr17:15440285:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1427:19575:29585

YES_LDAS

0.0039

1.9329

1.9899

"[""INTRACHROMOSOMAL[chr17:0.03Mb]"",""NEIGHBORS[26536]""]"

chr17:15503098-chr17:15440285

False

Read

count

too

low:

FAIL

TUBGCP5--TCEAL1

1.0

0.0

INCL_NON_REF_SPLICE

TUBGCP5^ENSG00000275835.5

chr15:23030885:-

TCEAL1^ENSG00000172465.14

chrX:103630308:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1333:17973:12938

NO_LDAS

0.0039

1.8256

1.8323

"[""INTERCHROMOSOMAL[chr15--chrX]""]"

chr15:23030885-chrX:103630308

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TUBA1B--SDC3

1.0

0.0

INCL_NON_REF_SPLICE

TUBA1B^ENSG00000123416.15

chr12:49131049:-

SDC3^ENSG00000162512.16

chr1:30877165:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2131:21128:14424

NO_LDAS

0.0039

1.371

1.9656

"[""INTERCHROMOSOMAL[chr12--chr1]""]"

chr12:49131049-chr1:30877165

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TTN--LAMA1

0.25

0.0

INCL_NON_REF_SPLICE

TTN^ENSG00000155657.28

chr2:178663266:-

LAMA1^ENSG00000101680.15

chr18:7023257:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2408:32810:5260

NO_LDAS

0.001

1.8295

1.9329

"[""INTERCHROMOSOMAL[chr2--chr18]""]"

chr2:178663266-chr18:7023257

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TTN--LAMA1

0.25

0.0

INCL_NON_REF_SPLICE

TTN^ENSG00000155657.28

chr2:178659005:-

LAMA1^ENSG00000101680.15

chr18:7023257:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2408:32810:5260

NO_LDAS

0.001

1.8295

1.9329

"[""INTERCHROMOSOMAL[chr2--chr18]""]"

chr2:178659005-chr18:7023257

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TTN--LAMA1

0.25

0.0

INCL_NON_REF_SPLICE

TTN^ENSG00000155657.28

chr2:178654745:-

LAMA1^ENSG00000101680.15

chr18:7023257:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2408:32810:5260

NO_LDAS

0.001

1.8295

1.9329

"[""INTERCHROMOSOMAL[chr2--chr18]""]"

chr2:178654745-chr18:7023257

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TTN--LAMA1

0.25

0.0

INCL_NON_REF_SPLICE

TTN^ENSG00000155657.28

chr2:178652096:-

LAMA1^ENSG00000101680.15

chr18:7023257:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2408:32810:5260

NO_LDAS

0.001

1.8295

1.9329

"[""INTERCHROMOSOMAL[chr2--chr18]""]"

chr2:178652096-chr18:7023257

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TTC39A--HNRNPUL2

1.0

0.0

INCL_NON_REF_SPLICE

TTC39A^ENSG00000085831.16

chr1:51300833:-

HNRNPUL2^ENSG00000214753.4

chr11:62715607:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1127:36264:20911

NO_LDAS

0.0039

1.7465

1.9219

"[""INTERCHROMOSOMAL[chr1--chr11]""]"

chr1:51300833-chr11:62715607

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TSPAN7--STOX2

1.0

0.0

INCL_NON_REF_SPLICE

TSPAN7^ENSG00000156298.13

chrX:38612517:+

STOX2^ENSG00000173320.12

chr4:184001325:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2429:15441:3312

NO_LDAS

0.0039

1.9656

1.9899

"[""INTERCHROMOSOMAL[chrX--chr4]""]"

chrX:38612517-chr4:184001325

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TSPAN5--PPP3CA

1.0

0.0

ONLY_REF_SPLICE

TSPAN5^ENSG00000168785.8

chr4:98658146:-

PPP3CA^ENSG00000138814.17

chr4:101109078:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1247:19995:20449

NO_LDAS

0.0039

1.7465

1.8323

"[""INTRACHROMOSOMAL[chr4:2.36Mb]""]"

chr4:98658146-chr4:101109078

False

Read

count

too

low:

FAIL

TRPM5--NPIPB2

1.0

0.0

INCL_NON_REF_SPLICE

TRPM5^ENSG00000070985.13

chr11:2421065:-

NPIPB2^ENSG00000234719.9

chr16:11927632:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2410:35269:24344

NO_LDAS

0.0039

1.4295

1.7232

"[""INTERCHROMOSOMAL[chr11--chr16]""]"

chr11:2421065-chr16:11927632

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TRIM44--SRRM2-AS1

1.0

0.0

INCL_NON_REF_SPLICE

TRIM44^ENSG00000166326.7

chr11:35735445:+

SRRM2-AS1^ENSG00000205913.7

chr16:2740063:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1342:9446:7278

NO_LDAS

0.0039

1.7819

1.7968

"[""INTERCHROMOSOMAL[chr11--chr16]""]"

chr11:35735445-chr16:2740063

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TRIM41--AQP3

1.0

0.0

INCL_NON_REF_SPLICE

TRIM41^ENSG00000146063.20

chr5:181223408:+

AQP3^ENSG00000165272.16

chr9:33442090:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1226:52007:28842

YES_LDAS

0.0039

1.3753

1.4295

"[""INTERCHROMOSOMAL[chr5--chr9]""]"

chr5:181223408-chr9:33442090

False

Read

count

too

low:

FAIL

TPST1--CACNA1A

0.1

0.0

INCL_NON_REF_SPLICE

TPST1^ENSG00000169902.15

chr7:66240663:+

CACNA1A^ENSG00000141837.22

chr19:13506299:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1226:38141:8721

NO_LDAS

0.0004

1.8295

0.9183

"[""INTERCHROMOSOMAL[chr7--chr19]""]"

chr7:66240663-chr19:13506299

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TOX4--AC108136.1

1.0

0.0

INCL_NON_REF_SPLICE

TOX4^ENSG00000092203.15

chr14:21488708:+

AC108136.1^ENSG00000255325.2

chr8:122486583:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1176:29784:3550

NO_LDAS

0.0039

1.9086

1.9329

"[""INTERCHROMOSOMAL[chr14--chr8]""]"

chr14:21488708-chr8:122486583

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TOX--SULT1C2

1.0

0.0

INCL_NON_REF_SPLICE

TOX^ENSG00000198846.6

chr8:58815515:-

SULT1C2^ENSG00000198203.10

chr2:108308761:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1452:37348:25283

NO_LDAS

0.0039

1.6402

1.8323

"[""INTERCHROMOSOMAL[chr8--chr2]""]"

chr8:58815515-chr2:108308761

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TOP1MT--RND2

1.0

0.0

INCL_NON_REF_SPLICE

TOP1MT^ENSG00000184428.13

chr8:143334740:-

RND2^ENSG00000108830.10

chr17:43029396:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1231:42089:4629

NO_LDAS

0.0039

1.6729

1.6895

"[""INTERCHROMOSOMAL[chr8--chr17]""]"

chr8:143334740-chr17:43029396

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TNXB--ARCN1

1.0

0.0

ONLY_REF_SPLICE

TNXB^ENSG00000168477.19

chr6:32109181:-

ARCN1^ENSG00000095139.14

chr11:118590341:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1290:33109:25143

YES_LDAS

0.0039

1.8256

1.7819

"[""INTERCHROMOSOMAL[chr6--chr11]""]"

chr6:32109181-chr11:118590341

False

Read

count

too

low:

FAIL

TNS3--MAP3K7CL

1.0

0.0

INCL_NON_REF_SPLICE

TNS3^ENSG00000136205.17

chr7:47280164:-

MAP3K7CL^ENSG00000156265.16

chr21:29077687:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2139:12213:1953

NO_LDAS

0.0039

1.8892

1.8323

"[""INTERCHROMOSOMAL[chr7--chr21]""]"

chr7:47280164-chr21:29077687

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TNKS1BP1--SNHG12

1.0

0.0

INCL_NON_REF_SPLICE

TNKS1BP1^ENSG00000149115.14

chr11:57309907:-

SNHG12^ENSG00000197989.14

chr1:28580984:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1357:31637:27021

NO_LDAS

0.0039

1.7819

1.7465

"[""INTERCHROMOSOMAL[chr11--chr1]""]"

chr11:57309907-chr1:28580984

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TNFSF14--THBS1

0.5

0.0

INCL_NON_REF_SPLICE

TNFSF14^ENSG00000125735.11

chr19:6669903:-

THBS1^ENSG00000137801.11

chr15:39582537:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2377:19850:20589

NO_LDAS

0.0019

1.8323

1.9329

"[""INTERCHROMOSOMAL[chr19--chr15]""]"

chr19:6669903-chr15:39582537

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TNFRSF19--MXI1

1.0

0.0

ONLY_REF_SPLICE

TNFRSF19^ENSG00000127863.16

chr13:23579529:+

MXI1^ENSG00000119950.21

chr10:110228189:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1449:17560:5386

YES_LDAS

0.0039

1.7232

1.9329

"[""INTERCHROMOSOMAL[chr13--chr10]""]"

chr13:23579529-chr10:110228189

False

Read

count

too

low:

FAIL

TNFAIP8--ZNF738

1.0

0.0

INCL_NON_REF_SPLICE

TNFAIP8^ENSG00000145779.8

chr5:119394378:+

ZNF738^ENSG00000172687.13

chr19:21378607:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1478:5231:4209

NO_LDAS

0.0039

1.7232

0.0

"[""INTERCHROMOSOMAL[chr5--chr19]""]"

chr5:119394378-chr19:21378607

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TMSB4XP6--TGFBR3L

1.0

0.0

INCL_NON_REF_SPLICE

TMSB4XP6^ENSG00000230043.1

chr20:50840619:-

TGFBR3L^ENSG00000260001.7

chr19:7917485:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2408:10757:28268

NO_LDAS

0.0039

1.8256

1.6895

"[""INTERCHROMOSOMAL[chr20--chr19]""]"

chr20:50840619-chr19:7917485

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TMEM94--NKX2-5

1.0

0.0

INCL_NON_REF_SPLICE

TMEM94^ENSG00000177728.17

chr17:75490758:+

NKX2-5^ENSG00000183072.10

chr5:173234088:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1216:51061:6549

NO_LDAS

0.0039

1.7819

1.9899

"[""INTERCHROMOSOMAL[chr17--chr5]""]"

chr17:75490758-chr5:173234088

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TMEM8B--TCP1P1

1.0

0.0

INCL_NON_REF_SPLICE

TMEM8B^ENSG00000137103.20

chr9:35852973:+

TCP1P1^ENSG00000229161.2

chr7:42795425:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2159:4285:19160

NO_LDAS

0.0039

1.9086

1.8295

"[""INTERCHROMOSOMAL[chr9--chr7]""]"

chr9:35852973-chr7:42795425

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TMEM67--DAPK2

1.0

0.0

ONLY_REF_SPLICE

TMEM67^ENSG00000164953.16

chr8:93763065:+

DAPK2^ENSG00000035664.11

chr15:63983754:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2218:6962:21332

NO_LDAS

0.0039

1.9329

"[""INTERCHROMOSOMAL[chr8--chr15]""]"

chr8:93763065-chr15:63983754

False

Read

count

too

low:

FAIL

TMEM214--GRID2IP

1.0

0.0

INCL_NON_REF_SPLICE

TMEM214^ENSG00000119777.20

chr2:27040496:+

GRID2IP^ENSG00000215045.8

chr7:6502787:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2475:6105:20183

NO_LDAS

0.0039

1.9329

1.7232

"[""INTERCHROMOSOMAL[chr2--chr7]""]"

chr2:27040496-chr7:6502787

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TMEM158--TRPM5

1.0

0.0

INCL_NON_REF_SPLICE

TMEM158^ENSG00000249992.2

chr3:45225584:-

TRPM5^ENSG00000070985.13

chr11:2414828:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2301:17091:17380

NO_LDAS

0.0039

1.371

1.8323

"[""INTERCHROMOSOMAL[chr3--chr11]""]"

chr3:45225584-chr11:2414828

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TMEM132B--ERLIN2

1.0

0.0

INCL_NON_REF_SPLICE

TMEM132B^ENSG00000139364.10

chr12:125650953:+

ERLIN2^ENSG00000147475.17

chr8:37737838:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1379:45633:26488

NO_LDAS

0.0039

1.9329

1.5656

"[""INTERCHROMOSOMAL[chr12--chr8]""]"

chr12:125650953-chr8:37737838

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TMEM114--BORCS8

1.0

0.0

INCL_NON_REF_SPLICE

TMEM114^ENSG00000232258.6

chr16:8572175:-

BORCS8^ENSG00000254901.8

chr19:19180718:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2320:7383:25620

NO_LDAS

0.0039

1.9899

1.6895

"[""INTERCHROMOSOMAL[chr16--chr19]""]"

chr16:8572175-chr19:19180718

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TMEM104--ABCC5

1.0

0.0

ONLY_REF_SPLICE

TMEM104^ENSG00000109066.14

chr17:74777738:+

ABCC5^ENSG00000114770.17

chr3:183972034:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1112:41507:5974

YES_LDAS

0.0039

1.9329

1.7056

"[""INTERCHROMOSOMAL[chr17--chr3]""]"

chr17:74777738-chr3:183972034

False

Read

count

too

low:

FAIL

TMED3--UBE2L3

1.0

0.0

INCL_NON_REF_SPLICE

TMED3^ENSG00000166557.14

chr15:79414447:+

UBE2L3^ENSG00000185651.15

chr22:21621515:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2125:22261:12182

NO_LDAS

0.0039

1.5546

1.8062

"[""INTERCHROMOSOMAL[chr15--chr22]""]"

chr15:79414447-chr22:21621515

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TMBIM1--PKD1L2

1.0

0.0

INCL_NON_REF_SPLICE

TMBIM1^ENSG00000135926.15

chr2:218279038:-

PKD1L2^ENSG00000166473.17

chr16:81175622:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1145:28749:11033

NO_LDAS

0.0039

1.9086

1.8892

"[""INTERCHROMOSOMAL[chr2--chr16]""]"

chr2:218279038-chr16:81175622

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TM9SF2--NOP14

1.0

0.0

INCL_NON_REF_SPLICE

TM9SF2^ENSG00000125304.10

chr13:99541667:+

NOP14^ENSG00000087269.16

chr4:2950192:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1226:36450:11593

NO_LDAS

0.0039

1.9899

1.8323

"[""INTERCHROMOSOMAL[chr13--chr4]""]"

chr13:99541667-chr4:2950192

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TM9SF1--BNIPL

1.0

0.0

ONLY_REF_SPLICE

TM9SF1^ENSG00000100926.15

chr14:24194675:-

BNIPL^ENSG00000163141.20

chr1:151037315:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2115:44872:20491

NO_LDAS

0.0039

1.9656

"[""INTERCHROMOSOMAL[chr14--chr1]""]"

chr14:24194675-chr1:151037315

False

Read

count

too

low:

FAIL

TM7SF2--TMCO3

0.5

0.0

INCL_NON_REF_SPLICE

TM7SF2^ENSG00000149809.17

chr11:65113594:+

TMCO3^ENSG00000150403.18

chr13:113503594:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1440:44298:11145

NO_LDAS

0.0019

1.7819

1.8892

"[""INTERCHROMOSOMAL[chr11--chr13]""]"

chr11:65113594-chr13:113503594

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TLN2--GGCT

1.0

0.0

INCL_NON_REF_SPLICE

TLN2^ENSG00000171914.16

chr15:62675321:+

GGCT^ENSG00000006625.18

chr7:30497672:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2113:5927:18193

NO_LDAS

0.0039

1.8892

"[""INTERCHROMOSOMAL[chr15--chr7]""]"

chr15:62675321-chr7:30497672

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TLL2--RASA3

1.0

0.0

INCL_NON_REF_SPLICE

TLL2^ENSG00000095587.9

chr10:96397268:-

RASA3^ENSG00000185989.11

chr13:114017351:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1217:30318:14116

NO_LDAS

0.0039

1.7232

1.6895

"[""INTERCHROMOSOMAL[chr10--chr13]""]"

chr10:96397268-chr13:114017351

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TLK1--R3HDM1

1.0

0.0

ONLY_REF_SPLICE

TLK1^ENSG00000198586.14

chr2:171160290:-

R3HDM1^ENSG00000048991.16

chr2:135721924:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1117:8718:21290

YES_LDAS

0.0039

1.4566

1.9899

"[""INTRACHROMOSOMAL[chr2:35.27Mb]""]"

chr2:171160290-chr2:135721924

False

Read

count

too

low:

FAIL

TLE5--KIAA1217

1.0

0.0

INCL_NON_REF_SPLICE

TLE5^ENSG00000104964.15

chr19:3054018:-

KIAA1217^ENSG00000120549.18

chr10:24473448:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1121:8289:29123

NO_LDAS

0.0039

1.6402

1.7465

"[""INTERCHROMOSOMAL[chr19--chr10]""]"

chr19:3054018-chr10:24473448

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TLE2--TLE1

0.5

0.0

ONLY_REF_SPLICE

TLE2^ENSG00000065717.15

chr19:3006420:-

TLE1^ENSG00000196781.16

chr9:81591052:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2250:2189:26544

NO_LDAS

0.0019

1.8892

1.7232

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr19--chr9]""]"

chr19:3006420-chr9:81591052

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

THBS1--DIDO1

0.5

0.0

INCL_NON_REF_SPLICE

THBS1^ENSG00000137801.11

chr15:39593426:+

DIDO1^ENSG00000101191.17

chr20:62896660:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1396:44168:19945

NO_LDAS

0.0019

1.9656

1.7465

"[""INTERCHROMOSOMAL[chr15--chr20]""]"

chr15:39593426-chr20:62896660

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

THBS1--BAG6

0.5

0.0

INCL_NON_REF_SPLICE

THBS1^ENSG00000137801.11

chr15:39593426:+

BAG6^ENSG00000204463.13

chr6:31642771:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1396:44168:19945

NO_LDAS

0.0019

1.9656

1.7819

"[""INTERCHROMOSOMAL[chr15--chr6]""]"

chr15:39593426-chr6:31642771

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TGFBR3--AKT1

1.0

0.0

INCL_NON_REF_SPLICE

TGFBR3^ENSG00000069702.11

chr1:91695672:-

AKT1^ENSG00000142208.17

chr14:104778412:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1177:18450:16792

NO_LDAS

0.0039

1.8256

1.3996

"[""INTERCHROMOSOMAL[chr1--chr14]""]"

chr1:91695672-chr14:104778412

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TGFBR2--SHLD2

1.0

0.0

ONLY_REF_SPLICE

TGFBR2^ENSG00000163513.19

chr3:30606977:+

SHLD2^ENSG00000122376.12

chr10:87180075:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1102:45802:3270

NO_LDAS

0.0039

1.9656

1.7819

"[""INTERCHROMOSOMAL[chr3--chr10]""]"

chr3:30606977-chr10:87180075

False

Read

count

too

low:

FAIL

TFRC--KRT18P16

1.0

0.0

INCL_NON_REF_SPLICE

TFRC^ENSG00000072274.13

chr3:196081918:-

KRT18P16^ENSG00000235275.3

chr5:123636350:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1288:43553:27539

NO_LDAS

0.0039

1.3383

1.7465

"[""INTERCHROMOSOMAL[chr3--chr5]""]"

chr3:196081918-chr5:123636350

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TFG--KY

1.0

0.0

INCL_NON_REF_SPLICE

TFG^ENSG00000114354.15

chr3:100736716:+

KY^ENSG00000174611.12

chr3:134610605:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2476:39945:15180

NO_LDAS

0.0039

1.9086

1.8892

"[""INTRACHROMOSOMAL[chr3:33.85Mb]""]"

chr3:100736716-chr3:134610605

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TET2--MBP

1.0

0.0

ONLY_REF_SPLICE

TET2^ENSG00000168769.14

chr4:105146979:+

MBP^ENSG00000197971.16

chr18:77105286:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2343:50066:2724

YES_LDAS

0.0039

1.4295

1.9086

"[""INTERCHROMOSOMAL[chr4--chr18]""]"

chr4:105146979-chr18:77105286

False

Read

count

too

low:

FAIL

TBL1XR1--PACSIN2

1.0

0.0

ONLY_REF_SPLICE

TBL1XR1^ENSG00000177565.18

chr3:177197121:-

PACSIN2^ENSG00000100266.19

chr22:42912157:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1472:41685:4657

YES_LDAS

0.0039

1.8892

1.8295

"[""INTERCHROMOSOMAL[chr3--chr22]""]"

chr3:177197121-chr22:42912157

False

Read

count

too

low:

FAIL

TBC1D27P--RPS4X

1.0

0.0

INCL_NON_REF_SPLICE

TBC1D27P^ENSG00000128438.10

chr17:16923225:-

RPS4X^ENSG00000198034.11

chrX:72272711:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1154:17059:1210

NO_LDAS

0.0039

1.8892

1.3383

"[""INTERCHROMOSOMAL[chr17--chrX]""]"

chr17:16923225-chrX:72272711

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

TAOK1--HEBP2

1.0

0.0

INCL_NON_REF_SPLICE

TAOK1^ENSG00000160551.12

chr17:29495568:+

HEBP2^ENSG00000051620.11

chr6:138420352:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1250:42429:23574

NO_LDAS

0.0039

1.7819

1.8062

"[""INTERCHROMOSOMAL[chr17--chr6]""]"

chr17:29495568-chr6:138420352

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TAF11--SYT7

1.0

0.0

INCL_NON_REF_SPLICE

TAF11^ENSG00000064995.18

chr6:34887787:-

SYT7^ENSG00000011347.10

chr11:61518351:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2219:49847:8959

NO_LDAS

0.0039

1.3383

1.8256

"[""INTERCHROMOSOMAL[chr6--chr11]""]"

chr6:34887787-chr11:61518351

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

TACC1--ATXN8OS

1.0

0.0

INCL_NON_REF_SPLICE

TACC1^ENSG00000147526.20

chr8:38843369:+

ATXN8OS^ENSG00000230223.8

chr13:70107332:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1156:14624:22887

NO_LDAS

0.0039

1.9086

1.8892

"[""INTERCHROMOSOMAL[chr8--chr13]""]"

chr8:38843369-chr13:70107332

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SYNDIG1--NFATC2

1.0

0.0

ONLY_REF_SPLICE

SYNDIG1^ENSG00000101463.6

chr20:24584993:+

NFATC2^ENSG00000101096.20

chr20:51524110:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1133:2861:13079

NO_LDAS

0.0039

1.9656

1.8062

"[""INTRACHROMOSOMAL[chr20:26.72Mb]""]"

chr20:24584993-chr20:51524110

False

Read

count

too

low:

FAIL

STX6--BAZ2B

1.0

0.0

INCL_NON_REF_SPLICE

STX6^ENSG00000135823.14

chr1:180984677:-

BAZ2B^ENSG00000123636.18

chr2:159419840:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1127:46676:21122

NO_LDAS

0.0039

1.9899

1.7232

"[""INTERCHROMOSOMAL[chr1--chr2]""]"

chr1:180984677-chr2:159419840

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

STX4--RN7SL559P

1.0

0.0

INCL_NON_REF_SPLICE

STX4^ENSG00000103496.15

chr16:31038272:+

RN7SL559P^ENSG00000240750.3

chr1:28032130:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1202:28385:22733

YES_LDAS

0.0039

1.8892

"[""INTERCHROMOSOMAL[chr16--chr1]""]"

chr16:31038272-chr1:28032130

False

Read

count

too

low:

FAIL

STX4--BAIAP2

0.5

0.0

INCL_NON_REF_SPLICE

STX4^ENSG00000103496.15

chr16:31033835:+

BAIAP2^ENSG00000175866.15

chr17:81105864:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1301:51943:28114

NO_LDAS

0.0019

1.8256

1.8892

"[""INTERCHROMOSOMAL[chr16--chr17]""]"

chr16:31033835-chr17:81105864

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

STX18-AS1--AC092437.1

1.0

0.0

INCL_NON_REF_SPLICE

STX18-AS1^ENSG00000247708.8

chr4:4649542:+

AC092437.1^ENSG00000280310.1

chr4:4820406:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1449:18636:9576

YES_LDAS

0.0039

1.9656

1.9086

"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr4:0.03Mb]"",""NEIGHBORS[33046]""]"

chr4:4649542-chr4:4820406

True

pair|recurrent

breakpoints

Blacklisted

FAIL

STX16--NPEPL1

1.0

0.0

ONLY_REF_SPLICE

STX16^ENSG00000124222.22

chr20:58673711:+

NPEPL1^ENSG00000215440.12

chr20:58691724:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1324:27026:23966

YES_LDAS

0.0039

1.7968

1.8256

"[""INTRACHROMOSOMAL[chr20:0.01Mb]"",""NEIGHBORS[9605]""]"

chr20:58673711-chr20:58691724

False

Read

count

too

low:

FAIL

STT3B--ARHGAP31

1.0

0.0

ONLY_REF_SPLICE

STT3B^ENSG00000163527.10

chr3:31580096:+

ARHGAP31^ENSG00000031081.11

chr3:119401822:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2273:15700:23322

YES_LDAS

0.0039

1.8323

1.3383

"[""INTRACHROMOSOMAL[chr3:87.66Mb]""]"

chr3:31580096-chr3:119401822

False

Read

count

too

low:

FAIL

STIM1--XIST

1.0

0.0

INCL_NON_REF_SPLICE

STIM1^ENSG00000167323.12

chr11:4082351:+

XIST^ENSG00000229807.12

chrX:73826284:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2220:8985:23097

NO_LDAS

0.0039

1.5546

"[""INTERCHROMOSOMAL[chr11--chrX]""]"

chr11:4082351-chrX:73826284

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

STAT2--AC092418.2

1.0

0.0

INCL_NON_REF_SPLICE

STAT2^ENSG00000170581.14

chr12:56351292:-

AC092418.2^ENSG00000287502.1

chr3:57555782:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2140:28498:24471

NO_LDAS

0.0039

1.8892

1.8323

"[""INTERCHROMOSOMAL[chr12--chr3]""]"

chr12:56351292-chr3:57555782

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

STARD13--ZNF644

1.0

0.0

ONLY_REF_SPLICE

STARD13^ENSG00000133121.21

chr13:33285470:-

ZNF644^ENSG00000122482.21

chr1:90982370:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2244:16598:12910

YES_LDAS

0.0039

1.6729

1.2419

"[""INTERCHROMOSOMAL[chr13--chr1]""]"

chr13:33285470-chr1:90982370

False

Read

count

too

low:

FAIL

ST14--AF117829.1

1.0

0.0

INCL_NON_REF_SPLICE

ST14^ENSG00000149418.11

chr11:130197853:+

AF117829.1^ENSG00000251136.9

chr8:89757685:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2489:46045:18880

NO_LDAS

0.0039

1.7819

1.3383

"[""INTERCHROMOSOMAL[chr11--chr8]""]"

chr11:130197853-chr8:89757685

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ST13--ITGA11

1.0

0.0

INCL_NON_REF_SPLICE

ST13^ENSG00000100380.14

chr22:40826114:-

ITGA11^ENSG00000137809.17

chr15:68297466:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1391:36151:21948

YES_LDAS

0.0039

1.7819

1.7232

"[""INTERCHROMOSOMAL[chr22--chr15]""]"

chr22:40826114-chr15:68297466

False

Read

count

too

low:

FAIL

SSU72--UBE2J2

1.0

0.0

ONLY_REF_SPLICE

SSU72^ENSG00000160075.12

chr1:1574478:-

UBE2J2^ENSG00000160087.21

chr1:1257310:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2150:20044:12126

YES_LDAS

0.0039

1.8323

1.8892

"[""INTRACHROMOSOMAL[chr1:0.27Mb]""]"

chr1:1574478-chr1:1257310

False

Read

count

too

low:

FAIL

SSTR5-AS1--SPG21

1.0

0.0

ONLY_REF_SPLICE

SSTR5-AS1^ENSG00000261713.6

chr16:1077624:-

SPG21^ENSG00000090487.11

chr15:64965460:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1231:22948:18081

NO_LDAS

0.0039

1.9329

1.7819

"[""INTERCHROMOSOMAL[chr16--chr15]""]"

chr16:1077624-chr15:64965460

False

Read

count

too

low:

FAIL

SSNA1--SNRNP25

1.0

0.0

INCL_NON_REF_SPLICE

SSNA1^ENSG00000176101.12

chr9:137189222:+

SNRNP25^ENSG00000161981.11

chr16:53898:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1260:40325:2527

YES_LDAS

0.0039

1.9219

1.4716

"[""INTERCHROMOSOMAL[chr9--chr16]""]"

chr9:137189222-chr16:53898

False

Read

count

too

low:

FAIL

SSBP4--MRPL23

1.0

0.0

INCL_NON_REF_SPLICE

SSBP4^ENSG00000130511.16

chr19:18431862:+

MRPL23^ENSG00000214026.11

chr11:1953187:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1133:8645:2107

NO_LDAS

0.0039

1.4566

1.8295

"[""INTERCHROMOSOMAL[chr19--chr11]""]"

chr19:18431862-chr11:1953187

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SRSF4--SPATA6

1.0

0.0

ONLY_REF_SPLICE

SRSF4^ENSG00000116350.17

chr1:29181646:-

SPATA6^ENSG00000132122.12

chr1:48305878:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1252:45171:6773

YES_LDAS

0.0039

1.8323

"[""INTRACHROMOSOMAL[chr1:19.11Mb]""]"

chr1:29181646-chr1:48305878

False

Read

count

too

low:

FAIL

SRSF4--MAGI1

1.0

0.0

ONLY_REF_SPLICE

SRSF4^ENSG00000116350.17

chr1:29181646:-

MAGI1^ENSG00000151276.23

chr3:65361337:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1239:6105:3032

NO_LDAS

0.0039

1.8323

1.5656

"[""INTERCHROMOSOMAL[chr1--chr3]""]"

chr1:29181646-chr3:65361337

False

Read

count

too

low:

FAIL

SRA1--CERCAM

1.0

0.0

INCL_NON_REF_SPLICE

SRA1^ENSG00000213523.11

chr5:140552045:-

CERCAM^ENSG00000167123.19

chr9:128434183:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1126:40374:22453

NO_LDAS

0.0039

1.8892

1.8295

"[""INTERCHROMOSOMAL[chr5--chr9]""]"

chr5:140552045-chr9:128434183

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

SQLE--CIRBP

1.0

0.0

INCL_NON_REF_SPLICE

SQLE^ENSG00000104549.12

chr8:124999694:+

CIRBP^ENSG00000099622.14

chr19:1271597:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1144:7262:29557

NO_LDAS

0.0039

1.7465

1.6049

"[""INTERCHROMOSOMAL[chr8--chr19]""]"

chr8:124999694-chr19:1271597

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SPTBN1--SPTB

1.0

0.0

ONLY_REF_SPLICE

SPTBN1^ENSG00000115306.16

chr2:54623596:+

SPTB^ENSG00000070182.21

chr14:64796715:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1202:29210:27077

NO_LDAS

0.0039

1.8892

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr2--chr14]""]"

chr2:54623596-chr14:64796715

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

SPTBN1--NAV3

1.0

0.0

INCL_NON_REF_SPLICE

SPTBN1^ENSG00000115306.16

chr2:54632768:+

NAV3^ENSG00000067798.16

chr12:77572221:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1359:23490:17198

NO_LDAS

0.0039

1.9656

1.8892

"[""INTERCHROMOSOMAL[chr2--chr12]""]"

chr2:54632768-chr12:77572221

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SPTBN1--DKK3

1.0

0.0

INCL_NON_REF_SPLICE

SPTBN1^ENSG00000115306.16

chr2:54629789:+

DKK3^ENSG00000050165.18

chr11:11964539:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1166:19680:7235

NO_LDAS

0.0039

1.8295

1.9086

"[""INTERCHROMOSOMAL[chr2--chr11]""]"

chr2:54629789-chr11:11964539

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SP100--UHRF1BP1L

1.0

0.0

INCL_NON_REF_SPLICE

SP100^ENSG00000067066.17

chr2:230466354:+

UHRF1BP1L^ENSG00000111647.13

chr12:100142673:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2410:12868:19034

NO_LDAS

0.0039

1.5301

1.5656

"[""INTERCHROMOSOMAL[chr2--chr12]""]"

chr2:230466354-chr12:100142673

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SP1--AKT2

1.0

0.0

ONLY_REF_SPLICE

SP1^ENSG00000185591.10

chr12:53383622:+

AKT2^ENSG00000105221.18

chr19:40255269:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2367:41798:6002

YES_LDAS

0.0039

1.9086

1.9656

"[""INTERCHROMOSOMAL[chr12--chr19]""]"

chr12:53383622-chr19:40255269

False

Read

count

too

low:

FAIL

SOX9--U2AF1L4

1.0

0.0

INCL_NON_REF_SPLICE

SOX9^ENSG00000125398.8

chr17:72124312:+

U2AF1L4^ENSG00000161265.15

chr19:35744888:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1471:8281:10781

NO_LDAS

0.0039

1.8323

1.4716

"[""INTERCHROMOSOMAL[chr17--chr19]""]"

chr17:72124312-chr19:35744888

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SOX12--NAPRT

1.0

0.0

INCL_NON_REF_SPLICE

SOX12^ENSG00000177732.9

chr20:325758:+

NAPRT^ENSG00000147813.16

chr8:143578068:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1218:26532:2653

NO_LDAS

0.0039

1.053

"[""INTERCHROMOSOMAL[chr20--chr8]""]"

chr20:325758-chr8:143578068

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SOX10--INSR

1.0

0.0

INCL_NON_REF_SPLICE

SOX10^ENSG00000100146.18

chr22:37984481:-

INSR^ENSG00000171105.14

chr19:7117190:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1177:5482:24625

YES_LDAS

0.0039

1.8892

1.053

"[""INTERCHROMOSOMAL[chr22--chr19]""]"

chr22:37984481-chr19:7117190

False

Read

count

too

low:

FAIL

SNX30--NUMB

1.0

0.0

INCL_NON_REF_SPLICE

SNX30^ENSG00000148158.17

chr9:112751157:+

NUMB^ENSG00000133961.20

chr14:73322817:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2196:16355:16582

NO_LDAS

0.0039

1.9656

1.8323

"[""INTERCHROMOSOMAL[chr9--chr14]""]"

chr9:112751157-chr14:73322817

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SND1--LRRC56

1.0

0.0

INCL_NON_REF_SPLICE

SND1^ENSG00000197157.11

chr7:128089692:+

LRRC56^ENSG00000161328.11

chr11:554341:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1326:32664:18347

NO_LDAS

0.0039

1.9656

1.8892

"[""INTERCHROMOSOMAL[chr7--chr11]""]"

chr7:128089692-chr11:554341

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SNCA--SNCG

1.0

0.0

ONLY_REF_SPLICE

SNCA^ENSG00000145335.17

chr4:89828143:-

SNCG^ENSG00000173267.14

chr10:86960001:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2201:15044:12966

NO_LDAS

0.0039

1.8892

1.8256

"[""INTERCHROMOSOMAL[chr4--chr10]""]"

chr4:89828143-chr10:86960001

False

Read

count

too

low:

FAIL

SNAI3--HADHB

1.0

0.0

INCL_NON_REF_SPLICE

SNAI3^ENSG00000185669.6

chr16:88677934:-

HADHB^ENSG00000138029.14

chr2:26263380:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2417:29501:9057

NO_LDAS

0.0039

1.8892

1.8323

"[""INTERCHROMOSOMAL[chr16--chr2]""]"

chr16:88677934-chr2:26263380

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SMYD4--AGBL5

1.0

0.0

INCL_NON_REF_SPLICE

SMYD4^ENSG00000186532.12

chr17:1800599:-

AGBL5^ENSG00000084693.16

chr2:27052952:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1198:2942:6521

NO_LDAS

0.0039

1.9086

1.8295

"[""INTERCHROMOSOMAL[chr17--chr2]""]"

chr17:1800599-chr2:27052952

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SMURF2--SUB1

0.5

0.0

ONLY_REF_SPLICE

SMURF2^ENSG00000108854.16

chr17:64661829:-

SUB1^ENSG00000113387.12

chr5:32536638:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2189:49402:22817

YES_LDAS

0.0019

1.9086

"[""INTERCHROMOSOMAL[chr17--chr5]""]"

chr17:64661829-chr5:32536638

False

Read

count

too

low:

FAIL

SMURF2--AC021074.3

0.5

0.0

ONLY_REF_SPLICE

SMURF2^ENSG00000108854.16

chr17:64661829:-

AC021074.3^ENSG00000243818.5

chr3:142935841:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2189:49402:22817

YES_LDAS

0.0019

1.9086

"[""INTERCHROMOSOMAL[chr17--chr3]""]"

chr17:64661829-chr3:142935841

False

Read

count

too

low:

FAIL

SMCHD1--COP1

1.0

0.0

ONLY_REF_SPLICE

SMCHD1^ENSG00000101596.16

chr18:2656261:+

COP1^ENSG00000143207.21

chr1:176027688:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1493:13612:22677

YES_LDAS

0.0039

1.6895

1.9086

"[""INTERCHROMOSOMAL[chr18--chr1]""]"

chr18:2656261-chr1:176027688

False

Read

count

too

low:

FAIL

SMC2--ATF4

0.5

0.0

INCL_NON_REF_SPLICE

SMC2^ENSG00000136824.19

chr9:104102567:+

ATF4^ENSG00000128272.16

chr22:39522444:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1470:44209:24891

NO_LDAS

0.0019

1.6729

1.3383

"[""INTERCHROMOSOMAL[chr9--chr22]""]"

chr9:104102567-chr22:39522444

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SMBD1P--SDHAP1

1.0

0.0

ONLY_REF_SPLICE

SMBD1P^ENSG00000283426.1

chr3:195708841:+

SDHAP1^ENSG00000185485.14

chr3:195960086:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2195:41264:10570

YES_LDAS

0.0039

1.8892

1.8062

"[""INTRACHROMOSOMAL[chr3:0.25Mb]""]"

chr3:195708841-chr3:195960086

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

SMAD9--ZMYM2

1.0

0.0

ONLY_REF_SPLICE

SMAD9^ENSG00000120693.14

chr13:36879278:-

ZMYM2^ENSG00000121741.17

chr13:19993063:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1152:28595:17913

NO_LDAS

0.0039

1.8295

1.8323

"[""INTRACHROMOSOMAL[chr13:16.75Mb]""]"

chr13:36879278-chr13:19993063

False

Read

count

too

low:

FAIL

SLFN11--AC026254.2

1.0

0.0

ONLY_REF_SPLICE

SLFN11^ENSG00000172716.16

chr17:35367541:-

AC026254.2^ENSG00000266313.2

chr17:27334260:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2361:13742:23294

NO_LDAS

0.0039

1.7232

"[""INTRACHROMOSOMAL[chr17:8.00Mb]""]"

chr17:35367541-chr17:27334260

False

Read

count

too

low:

FAIL

SLC9A3R1--OTUB1

1.0

0.0

INCL_NON_REF_SPLICE

SLC9A3R1^ENSG00000109062.12

chr17:74763520:+

OTUB1^ENSG00000167770.12

chr11:63998238:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1118:25642:11425

NO_LDAS

0.0039

1.9086

1.4566

"[""INTERCHROMOSOMAL[chr17--chr11]""]"

chr17:74763520-chr11:63998238

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SLC7A5--AC073111.3

1.0

0.0

ONLY_REF_SPLICE

SLC7A5^ENSG00000103257.9

chr16:87851724:-

AC073111.3^ENSG00000284691.1

chr7:150407584:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1263:4090:18207

YES_LDAS

0.0039

1.8892

"[""INTERCHROMOSOMAL[chr16--chr7]""]"

chr16:87851724-chr7:150407584

False

Read

count

too

low:

FAIL

SLC3A2--AC139099.2

1.0

0.0

INCL_NON_REF_SPLICE

SLC3A2^ENSG00000168003.18

chr11:62882066:+

AC139099.2^ENSG00000262898.3

chr17:83135761:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1138:49920:22985

NO_LDAS

0.0039

1.5546

1.9329

"[""INTERCHROMOSOMAL[chr11--chr17]""]"

chr11:62882066-chr17:83135761

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SLC38A4--SLC38A2

1.0

0.0

ONLY_REF_SPLICE

SLC38A4^ENSG00000139209.16

chr12:46784542:-

SLC38A2^ENSG00000134294.14

chr12:46366945:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2378:25537:17324

YES_LDAS

0.0039

1.9086

1.9329

"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr12:0.39Mb]""]"

chr12:46784542-chr12:46366945

True

pair|recurrent

breakpoints

Blacklisted

FAIL

SLC25A6P5--SLC25A6

1.0

0.0

INCL_NON_REF_SPLICE

SLC25A6P5^ENSG00000228948.2

chr9:105849819:+

SLC25A6^ENSG00000169100.14

chrX:1389727:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1307:48496:12728

NO_LDAS

0.0039

1.9656

1.7465

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr9--chrX]""]"

chr9:105849819-chrX:1389727

True

pair|recurrent

breakpoints

Blacklisted

FAIL

SHKBP1--KRBA1

1.0

0.0

INCL_NON_REF_SPLICE

SHKBP1^ENSG00000160410.15

chr19:40580597:+

KRBA1^ENSG00000133619.17

chr7:149719564:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2152:39169:21262

NO_LDAS

0.0039

1.6729

1.7465

"[""INTERCHROMOSOMAL[chr19--chr7]""]"

chr19:40580597-chr7:149719564

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SHC1--RNF146

1.0

0.0

ONLY_REF_SPLICE

SHC1^ENSG00000160691.19

chr1:154967671:-

RNF146^ENSG00000118518.16

chr6:127286616:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1375:26338:18796

NO_LDAS

0.0039

1.7968

1.6402

"[""INTERCHROMOSOMAL[chr1--chr6]""]"

chr1:154967671-chr6:127286616

False

Read

count

too

low:

FAIL

SH3TC2--POLDIP2

1.0

0.0

INCL_NON_REF_SPLICE

SH3TC2^ENSG00000169247.14

chr5:148995552:-

POLDIP2^ENSG00000004142.12

chr17:28353310:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2483:39403:15222

NO_LDAS

0.0039

1.8892

1.8295

"[""INTERCHROMOSOMAL[chr5--chr17]""]"

chr5:148995552-chr17:28353310

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SH3GLB2--MON2

1.0

0.0

INCL_NON_REF_SPLICE

SH3GLB2^ENSG00000148341.18

chr9:129021091:-

MON2^ENSG00000061987.16

chr12:62509136:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2127:4001:28534

YES_LDAS

0.0039

1.7232

1.9656

"[""INTERCHROMOSOMAL[chr9--chr12]""]"

chr9:129021091-chr12:62509136

False

Read

count

too

low:

FAIL

SH3GLB1--EEF2

1.0

0.0

INCL_NON_REF_SPLICE

SH3GLB1^ENSG00000097033.14

chr1:86704647:+

EEF2^ENSG00000167658.16

chr19:3984350:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2318:7941:24148

NO_LDAS

0.0039

1.5329

1.9899

"[""INTERCHROMOSOMAL[chr1--chr19]""]"

chr1:86704647-chr19:3984350

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SFXN4--SETDB1

1.0

0.0

INCL_NON_REF_SPLICE

SFXN4^ENSG00000183605.17

chr10:119155169:-

SETDB1^ENSG00000143379.12

chr1:150949197:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1210:40123:6605

NO_LDAS

0.0039

1.9086

1.7465

"[""INTERCHROMOSOMAL[chr10--chr1]""]"

chr10:119155169-chr1:150949197

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SF3B2--EME2

1.0

0.0

INCL_NON_REF_SPLICE

SF3B2^ENSG00000087365.16

chr11:66068186:+

EME2^ENSG00000197774.13

chr16:1777337:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2114:45681:24499

NO_LDAS

0.0039

1.9656

1.7232

"[""INTERCHROMOSOMAL[chr11--chr16]""]"

chr11:66068186-chr16:1777337

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SETD3--PPP1R13B

1.0

0.0

ONLY_REF_SPLICE

SETD3^ENSG00000183576.13

chr14:99480728:-

PPP1R13B^ENSG00000088808.18

chr14:103797518:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2241:44654:21878

NO_LDAS

0.0039

1.3383

1.6895

"[""INTRACHROMOSOMAL[chr14:4.25Mb]""]"

chr14:99480728-chr14:103797518

False

Read

count

too

low:

FAIL

SETD3--ECM2

1.0

0.0

INCL_NON_REF_SPLICE

SETD3^ENSG00000183576.13

chr14:99458279:-

ECM2^ENSG00000106823.12

chr9:92494030:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1173:20465:22327

NO_LDAS

0.0039

1.8892

1.7819

"[""INTERCHROMOSOMAL[chr14--chr9]""]"

chr14:99458279-chr9:92494030

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

SERPINB9P1--ESYT1

1.0

0.0

INCL_NON_REF_SPLICE

SERPINB9P1^ENSG00000230438.7

chr6:2876312:-

ESYT1^ENSG00000139641.13

chr12:56128423:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1129:22382:5050

NO_LDAS

0.0039

1.5656

1.8892

"[""INTERCHROMOSOMAL[chr6--chr12]""]"

chr6:2876312-chr12:56128423

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SERINC2--ZSCAN9

1.0

0.0

ONLY_REF_SPLICE

SERINC2^ENSG00000168528.12

chr1:31429538:+

ZSCAN9^ENSG00000137185.13

chr6:28232562:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1243:8766:12098

YES_LDAS

0.0039

1.7465

1.7232

"[""INTERCHROMOSOMAL[chr1--chr6]""]"

chr1:31429538-chr6:28232562

False

Read

count

too

low:

FAIL

SERINC2--SLFNL1

1.0

0.0

INCL_NON_REF_SPLICE

SERINC2^ENSG00000168528.12

chr1:31423743:+

SLFNL1^ENSG00000171790.15

chr1:41017341:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1181:11468:6689

NO_LDAS

0.0039

1.7465

"[""INTRACHROMOSOMAL[chr1:9.58Mb]""]"

chr1:31423743-chr1:41017341

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SEPTIN9--RPL37A

0.5

0.0

INCL_NON_REF_SPLICE

SEPTIN9^ENSG00000184640.20

chr17:77498820:+

RPL37A^ENSG00000197756.10

chr2:216499348:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1138:26322:11313

NO_LDAS

0.0019

1.6895

1.7232

"[""INTERCHROMOSOMAL[chr17--chr2]""]"

chr17:77498820-chr2:216499348

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SEPTIN14--AP006222.1

1.0

0.0

INCL_NON_REF_SPLICE

SEPTIN14^ENSG00000154997.9

chr7:55795924:-

AP006222.1^ENSG00000228463.10

chr1:289370:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2156:3443:3074

YES_LDAS

0.0039

1.5546

1.7968

"[""INTERCHROMOSOMAL[chr7--chr1]""]"

chr7:55795924-chr1:289370

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

SEPHS2--MARCKS

1.0

0.0

INCL_NON_REF_SPLICE

SEPHS2^ENSG00000179918.19

chr16:30444990:-

MARCKS^ENSG00000277443.3

chr6:113860421:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1170:35706:1112

NO_LDAS

0.0039

1.7465

1.053

"[""INTERCHROMOSOMAL[chr16--chr6]""]"

chr16:30444990-chr6:113860421

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SENP2--STAT5B

0.5

0.0

INCL_NON_REF_SPLICE

SENP2^ENSG00000163904.13

chr3:185632829:+

STAT5B^ENSG00000173757.10

chr17:42217240:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1382:46498:25802

NO_LDAS

0.0019

1.7232

1.8323

"[""INTERCHROMOSOMAL[chr3--chr17]""]"

chr3:185632829-chr17:42217240

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SELENOS--CPSF6

1.0

0.0

INCL_NON_REF_SPLICE

SELENOS^ENSG00000131871.15

chr15:101277421:-

CPSF6^ENSG00000111605.18

chr12:69239612:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2445:28231:18179

NO_LDAS

0.0039

0.9183

"[""INTERCHROMOSOMAL[chr15--chr12]""]"

chr15:101277421-chr12:69239612

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SEC22A--TTL

1.0

0.0

INCL_NON_REF_SPLICE

SEC22A^ENSG00000121542.12

chr3:123271904:+

TTL^ENSG00000114999.8

chr2:112483372:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1286:23280:9491

NO_LDAS

0.0039

1.9329

1.9656

"[""INTERCHROMOSOMAL[chr3--chr2]""]"

chr3:123271904-chr2:112483372

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SEC13--FKBP8

1.0

0.0

INCL_NON_REF_SPLICE

SEC13^ENSG00000157020.18

chr3:10305139:-

FKBP8^ENSG00000105701.16

chr19:18541850:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1149:49047:20939

NO_LDAS

0.0039

1.4566

0.9968

"[""INTERCHROMOSOMAL[chr3--chr19]""]"

chr3:10305139-chr19:18541850

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SDK2--ZNF429

1.0

0.0

ONLY_REF_SPLICE

SDK2^ENSG00000069188.17

chr17:73401020:-

ZNF429^ENSG00000197013.10

chr19:21541764:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1145:42138:9982

YES_LDAS

0.0039

1.7056

1.8892

"[""INTERCHROMOSOMAL[chr17--chr19]""]"

chr17:73401020-chr19:21541764

False

Read

count

too

low:

FAIL

SCUBE1--KCTD13

1.0

0.0

INCL_NON_REF_SPLICE

SCUBE1^ENSG00000159307.19

chr22:43197586:-

KCTD13^ENSG00000174943.11

chr16:29923359:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1253:33012:10879

NO_LDAS

0.0039

1.8892

1.5628

"[""INTERCHROMOSOMAL[chr22--chr16]""]"

chr22:43197586-chr16:29923359

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SCGB3A1--CACNB3

1.0

0.0

INCL_NON_REF_SPLICE

SCGB3A1^ENSG00000161055.4

chr5:180590231:-

CACNB3^ENSG00000167535.8

chr12:48826330:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2169:40075:15349

NO_LDAS

0.0039

1.9086

1.9656

"[""INTERCHROMOSOMAL[chr5--chr12]""]"

chr5:180590231-chr12:48826330

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SCFD2--BMP2K

1.0

0.0

ONLY_REF_SPLICE

SCFD2^ENSG00000184178.16

chr4:53352598:-

BMP2K^ENSG00000138756.19

chr4:78826037:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2144:50802:2345

YES_LDAS

0.0039

1.8256

1.9899

"[""INTRACHROMOSOMAL[chr4:25.41Mb]""]"

chr4:53352598-chr4:78826037

False

Read

count

too

low:

FAIL

SCAMP3--BCL7A

1.0

0.0

INCL_NON_REF_SPLICE

SCAMP3^ENSG00000116521.11

chr1:155257285:-

BCL7A^ENSG00000110987.9

chr12:122020425:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1101:9317:16414

NO_LDAS

0.0039

1.7465

1.8256

"[""INTERCHROMOSOMAL[chr1--chr12]""]"

chr1:155257285-chr12:122020425

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

SAV1--WWP2

1.0

0.0

INCL_NON_REF_SPLICE

SAV1^ENSG00000151748.15

chr14:50644932:-

WWP2^ENSG00000198373.13

chr16:69929450:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:51061:4307

NO_LDAS

0.0039

1.5656

1.6402

"[""INTERCHROMOSOMAL[chr14--chr16]""]"

chr14:50644932-chr16:69929450

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

S1PR4--IFIT1P1

1.0

0.0

INCL_NON_REF_SPLICE

S1PR4^ENSG00000125910.6

chr19:3179047:+

IFIT1P1^ENSG00000215515.2

chr13:32384872:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2474:2383:15166

NO_LDAS

0.0039

1.8892

1.8323

"[""INTERCHROMOSOMAL[chr19--chr13]""]"

chr19:3179047-chr13:32384872

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RYK--NEB

1.0

0.0

ONLY_REF_SPLICE

RYK^ENSG00000163785.13

chr3:134222418:-

NEB^ENSG00000183091.20

chr2:151527022:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1274:1024:22201

NO_LDAS

0.0039

1.9329

1.7819

"[""INTERCHROMOSOMAL[chr3--chr2]""]"

chr3:134222418-chr2:151527022

False

Read

count

too

low:

FAIL

RUNX1--SCAF4

1.0

0.0

ONLY_REF_SPLICE

RUNX1^ENSG00000159216.19

chr21:34859474:-

SCAF4^ENSG00000156304.15

chr21:31706357:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1324:18774:26432

YES_LDAS

0.0039

1.7819

1.6402

"[""INTRACHROMOSOMAL[chr21:3.06Mb]""]"

chr21:34859474-chr21:31706357

False

Read

count

too

low:

FAIL

RSRP1--TRIM16L

0.5

0.0

INCL_NON_REF_SPLICE

RSRP1^ENSG00000117616.18

chr1:25246527:-

TRIM16L^ENSG00000108448.22

chr17:18735119:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1476:10037:14746

NO_LDAS

0.0019

1.9329

1.3996

"[""INTERCHROMOSOMAL[chr1--chr17]""]"

chr1:25246527-chr17:18735119

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RS1--CC2D1A

1.0

0.0

INCL_NON_REF_SPLICE

RS1^ENSG00000102104.9

chrX:18640436:-

CC2D1A^ENSG00000132024.18

chr19:13912323:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2394:46353:22495

NO_LDAS

0.0039

0.3534

1.8256

"[""INTERCHROMOSOMAL[chrX--chr19]""]"

chrX:18640436-chr19:13912323

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RS1--ATP2A2

1.0

0.0

INCL_NON_REF_SPLICE

RS1^ENSG00000102104.9

chrX:18640436:-

ATP2A2^ENSG00000174437.17

chr12:110339529:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1164:29566:19678

NO_LDAS

0.0039

0.3534

1.9219

"[""INTERCHROMOSOMAL[chrX--chr12]""]"

chrX:18640436-chr12:110339529

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPS6--RPS6P23

1.0

0.0

INCL_NON_REF_SPLICE

RPS6^ENSG00000137154.13

chr9:19378368:-

RPS6P23^ENSG00000230871.1

chr13:99174107:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2367:28385:5554

NO_LDAS

0.0039

1.7232

1.9656

"[""INTERCHROMOSOMAL[chr9--chr13]""]"

chr9:19378368-chr13:99174107

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPS2P5--TNFSF9

0.25

0.0

INCL_NON_REF_SPLICE

RPS2P5^ENSG00000240342.3

chr12:118246432:+

TNFSF9^ENSG00000125657.5

chr19:6534922:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2117:24890:21108

NO_LDAS

0.001

1.8256

1.6895

"[""INTERCHROMOSOMAL[chr12--chr19]""]"

chr12:118246432-chr19:6534922

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPS26--FAAP20

1.0

0.0

INCL_NON_REF_SPLICE

RPS26^ENSG00000197728.11

chr12:56043493:+

FAAP20^ENSG00000162585.17

chr1:2192551:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1440:5263:2836

NO_LDAS

0.0039

1.9899

1.3996

"[""INTERCHROMOSOMAL[chr12--chr1]""]"

chr12:56043493-chr1:2192551

True

pair|recurrent

breakpoints

Blacklisted

FAIL

RPS24P1--RPS24

1.0

0.0

INCL_NON_REF_SPLICE

RPS24P1^ENSG00000236477.1

chrY:12245451:+

RPS24^ENSG00000138326.21

chr10:78040208:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2486:29331:11061

NO_LDAS

0.0039

1.8323

1.9329

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chrY--chr10]""]"

chrY:12245451-chr10:78040208

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

RPS23--RPS23P3

1.0

0.0

INCL_NON_REF_SPLICE

RPS23^ENSG00000186468.13

chr5:82276178:-

RPS23P3^ENSG00000244099.1

chr4:66431301:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2488:39185:6465

NO_LDAS

0.0039

1.9656

1.9899

"[""INTERCHROMOSOMAL[chr5--chr4]""]"

chr5:82276178-chr4:66431301

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPRD1B--TTI1

1.0

0.0

ONLY_REF_SPLICE

RPRD1B^ENSG00000101413.12

chr20:38034098:+

TTI1^ENSG00000101407.13

chr20:38013857:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1260:19114:1827

NO_LDAS

0.0039

1.8256

1.9329

"[""INTRACHROMOSOMAL[chr20:0.00Mb]"",""LOCAL_INVERSION:+:-:[264]""]"

chr20:38034098-chr20:38013857

False

Read

count

too

low:

FAIL

RPLP1--AC092639.1

1.0

0.0

INCL_NON_REF_SPLICE

RPLP1^ENSG00000137818.12

chr15:69455287:+

AC092639.1^ENSG00000248755.1

chr4:171169521:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1462:26589:2527

NO_LDAS

0.0039

1.8062

1.7819

"[""INTERCHROMOSOMAL[chr15--chr4]""]"

chr15:69455287-chr4:171169521

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPL8--ACSS3

1.0

0.0

INCL_NON_REF_SPLICE

RPL8^ENSG00000161016.18

chr8:144791277:-

ACSS3^ENSG00000111058.8

chr12:81255679:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1390:28344:12798

NO_LDAS

0.0039

1.8892

1.4256

"[""INTERCHROMOSOMAL[chr8--chr12]""]"

chr8:144791277-chr12:81255679

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPL7AP30--RPL7AP51

1.0

0.0

INCL_NON_REF_SPLICE

RPL7AP30^ENSG00000241741.1

chr4:112788543:-

RPL7AP51^ENSG00000226448.1

chr10:67334428:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1253:6388:15124

NO_LDAS

0.0039

1.6895

1.3383

"[""INTERCHROMOSOMAL[chr4--chr10]""]"

chr4:112788543-chr10:67334428

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

RPL37A--XXYLT1

1.0

0.0

INCL_NON_REF_SPLICE

RPL37A^ENSG00000197756.10

chr2:216500031:+

XXYLT1^ENSG00000173950.16

chr3:195069933:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1310:15570:8356

NO_LDAS

0.0039

1.9899

1.8295

"[""INTERCHROMOSOMAL[chr2--chr3]""]"

chr2:216500031-chr3:195069933

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPL32P32--RPL32

1.0

0.0

INCL_NON_REF_SPLICE

RPL32P32^ENSG00000241157.1

chr17:60245407:-

RPL32^ENSG00000144713.13

chr3:12836223:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1327:44589:18263

YES_LDAS

0.0039

1.9329

1.9656

"[""INTERCHROMOSOMAL[chr17--chr3]""]"

chr17:60245407-chr3:12836223

False

Read

count

too

low:

FAIL

RPL31P35--RPL31P63

0.12

0.0

INCL_NON_REF_SPLICE

RPL31P35^ENSG00000232612.1

chr7:54656475:+

RPL31P63^ENSG00000236735.3

chrX:68600219:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2169:47615:13863

NO_LDAS

0.0005

1.9086

1.6895

"[""INTERCHROMOSOMAL[chr7--chrX]""]"

chr7:54656475-chrX:68600219

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPL26P34--RPL26

1.0

0.0

INCL_NON_REF_SPLICE

RPL26P34^ENSG00000225404.2

chr13:24704716:-

RPL26^ENSG00000161970.15

chr17:8382230:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1403:25828:28955

NO_LDAS

0.0039

1.4566

1.8892

"[""INTERCHROMOSOMAL[chr13--chr17]""]"

chr13:24704716-chr17:8382230

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPL24--LINC00114

1.0

0.0

INCL_NON_REF_SPLICE

RPL24^ENSG00000114391.13

chr3:101685814:-

LINC00114^ENSG00000223806.8

chr21:38739169:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2298:16929:12476

NO_LDAS

0.0039

1.8323

1.5546

"[""INTERCHROMOSOMAL[chr3--chr21]""]"

chr3:101685814-chr21:38739169

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPL24--AL359764.3

1.0

0.0

INCL_NON_REF_SPLICE

RPL24^ENSG00000114391.13

chr3:101685818:-

AL359764.3^ENSG00000287738.1

chr1:241455495:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1247:21629:3438

NO_LDAS

0.0039

1.6895

1.6402

"[""INTERCHROMOSOMAL[chr3--chr1]""]"

chr3:101685818-chr1:241455495

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPL13A--ZNF234

1.0

0.0

INCL_NON_REF_SPLICE

RPL13A^ENSG00000142541.18

chr19:49490295:+

ZNF234^ENSG00000263002.8

chr19:44159165:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1156:36127:29501

NO_LDAS

0.0039

1.7465

1.7968

"[""INTRACHROMOSOMAL[chr19:5.33Mb]""]"

chr19:49490295-chr19:44159165

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPL13A--NPHP4

1.0

0.0

INCL_NON_REF_SPLICE

RPL13A^ENSG00000142541.18

chr19:49490295:+

NPHP4^ENSG00000131697.18

chr1:5879491:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1236:48974:3354

NO_LDAS

0.0039

1.7465

1.9656

"[""INTERCHROMOSOMAL[chr19--chr1]""]"

chr19:49490295-chr1:5879491

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPL12P27--RPL12P10

1.0

0.0

INCL_NON_REF_SPLICE

RPL12P27^ENSG00000237169.1

chr10:97309710:-

RPL12P10^ENSG00000226279.2

chr7:22882143:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2234:31548:6829

YES_LDAS

0.0039

1.9086

1.7465

"[""INTERCHROMOSOMAL[chr10--chr7]""]"

chr10:97309710-chr7:22882143

False

Read

count

too

low:

FAIL

RPL10--TNC

1.0

0.0

INCL_NON_REF_SPLICE

RPL10^ENSG00000147403.18

chrX:154399396:+

TNC^ENSG00000041982.16

chr9:115026584:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1116:51651:25872

NO_LDAS

0.0039

1.7819

1.9656

"[""INTERCHROMOSOMAL[chrX--chr9]""]"

chrX:154399396-chr9:115026584

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RPL10--TBC1D9B

1.0

0.0

INCL_NON_REF_SPLICE

RPL10^ENSG00000147403.18

chrX:154399594:+

TBC1D9B^ENSG00000197226.13

chr5:179867822:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1384:50228:1995

NO_LDAS

0.0039

1.9899

1.5628

"[""INTERCHROMOSOMAL[chrX--chr5]""]"

chrX:154399594-chr5:179867822

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RNF152--DCAF8

1.0

0.0

ONLY_REF_SPLICE

RNF152^ENSG00000176641.11

chr18:61892795:-

DCAF8^ENSG00000132716.19

chr1:160218968:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1288:43610:28702

YES_LDAS

0.0039

1.9086

1.9329

"[""INTERCHROMOSOMAL[chr18--chr1]""]"

chr18:61892795-chr1:160218968

False

Read

count

too

low:

FAIL

RNF126--FBXL16

1.0

0.0

INCL_NON_REF_SPLICE

RNF126^ENSG00000070423.18

chr19:652233:-

FBXL16^ENSG00000127585.12

chr16:695461:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2375:12795:23223

NO_LDAS

0.0039

1.8323

1.9086

"[""INTERCHROMOSOMAL[chr19--chr16]""]"

chr19:652233-chr16:695461

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RN7SL753P--TRIOBP

0.25

0.0

INCL_NON_REF_SPLICE

RN7SL753P^ENSG00000264275.1

chr2:202333613:+

TRIOBP^ENSG00000100106.22

chr22:37746312:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1335:50511:27595

NO_LDAS

0.001

1.9656

0.8366

"[""INTERCHROMOSOMAL[chr2--chr22]""]"

chr2:202333613-chr22:37746312

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RN7SL630P--RN7SL617P

0.33

0.0

INCL_NON_REF_SPLICE

RN7SL630P^ENSG00000264978.2

chr12:93831228:+

RN7SL617P^ENSG00000241162.3

chr6:110440150:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1355:34913:24961

YES_LDAS

0.0013

1.8323

1.9329

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr12--chr6]""]"

chr12:93831228-chr6:110440150

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

RN7SL630P--RN7SL452P

1.0

0.0

INCL_NON_REF_SPLICE

RN7SL630P^ENSG00000264978.2

chr12:93831228:+

RN7SL452P^ENSG00000243103.3

chr14:50637835:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1372:11833:29319

YES_LDAS

0.0039

1.8323

1.9086

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr12--chr14]""]"

chr12:93831228-chr14:50637835

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

RN7SL630P--RN7SL277P

0.33

0.0

INCL_NON_REF_SPLICE

RN7SL630P^ENSG00000264978.2

chr12:93831228:+

RN7SL277P^ENSG00000240490.3

chr1:19424537:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1355:34913:24961

YES_LDAS

0.0013

1.8323

1.9329

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr12--chr1]""]"

chr12:93831228-chr1:19424537

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

RN7SL47P--RN7SL296P

0.11

0.0

INCL_NON_REF_SPLICE

RN7SL47P^ENSG00000244710.3

chr6:106283481:-

RN7SL296P^ENSG00000275090.1

chr3:33103058:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1173:2027:8160

NO_LDAS

0.0004

1.9086

1.8892

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr6--chr3]""]"

chr6:106283481-chr3:33103058

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

RN7SL361P--PDE6A

0.1

0.0

INCL_NON_REF_SPLICE

RN7SL361P^ENSG00000242158.3

chr2:60640792:+

PDE6A^ENSG00000132915.11

chr5:149867234:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2264:4293:17296

NO_LDAS

0.0004

1.7968

1.7465

"[""INTERCHROMOSOMAL[chr2--chr5]""]"

chr2:60640792-chr5:149867234

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RN7SL263P--RN7SL127P

0.5

0.0

INCL_NON_REF_SPLICE

RN7SL263P^ENSG00000240160.3

chr22:23261801:-

RN7SL127P^ENSG00000242175.3

chr4:78899004:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1426:40059:11089

NO_LDAS

0.0019

1.8892

1.5656

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr22--chr4]""]"

chr22:23261801-chr4:78899004

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

RN7SL221P--PDE6A

0.1

0.0

INCL_NON_REF_SPLICE

RN7SL221P^ENSG00000239472.3

chr6:5918768:-

PDE6A^ENSG00000132915.11

chr5:149867234:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2264:4293:17296

NO_LDAS

0.0004

1.7056

1.7465

"[""INTERCHROMOSOMAL[chr6--chr5]""]"

chr6:5918768-chr5:149867234

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RN7SKP292--RN7SKP80

0.33

0.0

INCL_NON_REF_SPLICE

RN7SKP292^ENSG00000202392.1

chr4:6997194:+

RN7SKP80^ENSG00000202058.1

chr22:42565143:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1111:32219:21556

YES_LDAS

0.0013

1.9329

"[""INTERCHROMOSOMAL[chr4--chr22]""]"

chr4:6997194-chr22:42565143

False

Read

count

too

low:

FAIL

RN7SKP292--PLCG2

0.33

0.0

INCL_NON_REF_SPLICE

RN7SKP292^ENSG00000202392.1

chr4:6997194:+

PLCG2^ENSG00000197943.10

chr16:81962114:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1111:32219:21556

YES_LDAS

0.0013

1.9329

"[""INTERCHROMOSOMAL[chr4--chr16]""]"

chr4:6997194-chr16:81962114

False

Read

count

too

low:

FAIL

RIT1--RIT2

1.0

0.0

ONLY_REF_SPLICE

RIT1^ENSG00000143622.11

chr1:155904311:-

RIT2^ENSG00000152214.14

chr18:42974147:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1152:4090:24457

NO_LDAS

0.0039

1.6729

1.7465

"[""INTERCHROMOSOMAL[chr1--chr18]""]"

chr1:155904311-chr18:42974147

False

Read

count

too

low:

FAIL

RIN3--RCOR1

1.0

0.0

ONLY_REF_SPLICE

RIN3^ENSG00000100599.16

chr14:92513976:+

RCOR1^ENSG00000089902.10

chr14:102681895:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1164:37065:3270

YES_LDAS

0.0039

1.4295

1.7819

"[""INTRACHROMOSOMAL[chr14:9.90Mb]""]"

chr14:92513976-chr14:102681895

False

Read

count

too

low:

FAIL

RIMKLBP1--TCF12

1.0

0.0

INCL_NON_REF_SPLICE

RIMKLBP1^ENSG00000189089.5

chr21:36050345:+

TCF12^ENSG00000140262.18

chr15:56921026:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1481:30294:19118

NO_LDAS

0.0039

1.9086

1.7056

"[""INTERCHROMOSOMAL[chr21--chr15]""]"

chr21:36050345-chr15:56921026

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RHOBTB3--PCCB

1.0

0.0

INCL_NON_REF_SPLICE

RHOBTB3^ENSG00000164292.13

chr5:95780425:+

PCCB^ENSG00000114054.14

chr3:136334606:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2281:19607:26278

NO_LDAS

0.0039

1.8295

1.9656

"[""INTERCHROMOSOMAL[chr5--chr3]""]"

chr5:95780425-chr3:136334606

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RFX1--EPHA2

1.0

0.0

ONLY_REF_SPLICE

RFX1^ENSG00000132005.9

chr19:14006103:-

EPHA2^ENSG00000142627.13

chr1:16125320:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1132:2845:7390

YES_LDAS

0.0039

1.4716

1.8892

"[""INTERCHROMOSOMAL[chr19--chr1]""]"

chr19:14006103-chr1:16125320

False

Read

count

too

low:

FAIL

RFX1--AP000721.2

1.0

0.0

INCL_NON_REF_SPLICE

RFX1^ENSG00000132005.9

chr19:13993525:-

AP000721.2^ENSG00000256824.1

chr11:64103581:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1153:45794:26208

NO_LDAS

0.0039

1.8062

0.9056

"[""INTERCHROMOSOMAL[chr19--chr11]""]"

chr19:13993525-chr11:64103581

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RETREG1--GOLPH3

1.0

0.0

ONLY_REF_SPLICE

RETREG1^ENSG00000154153.14

chr5:16565763:-

GOLPH3^ENSG00000113384.14

chr5:32126636:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1492:47089:22733

YES_LDAS

0.0039

1.8892

1.9086

"[""INTRACHROMOSOMAL[chr5:15.51Mb]""]"

chr5:16565763-chr5:32126636

False

Read

count

too

low:

FAIL

REPS1--AC135895.1

1.0

0.0

ONLY_REF_SPLICE

REPS1^ENSG00000135597.19

chr6:138987530:-

AC135895.1^ENSG00000198671.3

chr12:65019347:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1217:7601:20449

YES_LDAS

0.0039

1.9656

1.9219

"[""INTERCHROMOSOMAL[chr6--chr12]""]"

chr6:138987530-chr12:65019347

False

Read

count

too

low:

FAIL

RELA--POLR3D

0.5

0.0

INCL_NON_REF_SPLICE

RELA^ENSG00000173039.19

chr11:65658718:-

POLR3D^ENSG00000168495.13

chr8:22248617:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1243:42866:14522

NO_LDAS

0.0019

1.6895

1.6402

"[""INTERCHROMOSOMAL[chr11--chr8]""]"

chr11:65658718-chr8:22248617

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RELA--CISH

0.5

0.0

INCL_NON_REF_SPLICE

RELA^ENSG00000173039.19

chr11:65658718:-

CISH^ENSG00000114737.16

chr3:50610698:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1243:42866:14522

NO_LDAS

0.0019

1.6895

1.7968

"[""INTERCHROMOSOMAL[chr11--chr3]""]"

chr11:65658718-chr3:50610698

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RCC2P3--MGMT

1.0

0.0

INCL_NON_REF_SPLICE

RCC2P3^ENSG00000233951.3

chr7:138122294:+

MGMT^ENSG00000170430.10

chr10:129707912:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1410:1615:3802

NO_LDAS

0.0039

1.8323

1.4566

"[""INTERCHROMOSOMAL[chr7--chr10]""]"

chr7:138122294-chr10:129707912

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RBPMSLP--SLC35F3

1.0

0.0

INCL_NON_REF_SPLICE

RBPMSLP^ENSG00000234159.1

chr21:15744882:-

SLC35F3^ENSG00000183780.13

chr1:233905012:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1455:32130:19020

NO_LDAS

0.0039

1.3996

1.5628

"[""INTERCHROMOSOMAL[chr21--chr1]""]"

chr21:15744882-chr1:233905012

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RBM14--RBM4

1.0

0.0

ONLY_REF_SPLICE

RBM14^ENSG00000239306.5

chr11:66617057:+

RBM4^ENSG00000173933.21

chr11:66646027:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2170:49419:2780

YES_LDAS

0.0039

1.7465

1.231

"[""HGNC_GENEFAM"",""Greger_Normal"",""INTRACHROMOSOMAL[chr11:0.01Mb]"",""NEIGHBORS[8733]""]"

chr11:66617057-chr11:66646027

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

RBM10--TAOK2

1.0

0.0

INCL_NON_REF_SPLICE

RBM10^ENSG00000182872.16

chrX:47186144:+

TAOK2^ENSG00000149930.18

chr16:29983051:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1195:13256:10262

NO_LDAS

0.0039

1.5219

1.8295

"[""INTERCHROMOSOMAL[chrX--chr16]""]"

chrX:47186144-chr16:29983051

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RBCK1--FKBP4

1.0

0.0

ONLY_REF_SPLICE

RBCK1^ENSG00000125826.21

chr20:422238:+

FKBP4^ENSG00000004478.8

chr12:2803151:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1244:49047:11663

YES_LDAS

0.0039

1.6895

1.8062

"[""INTERCHROMOSOMAL[chr20--chr12]""]"

chr20:422238-chr12:2803151

False

Read

count

too

low:

FAIL

RASAL1--CIB1

1.0

0.0

ONLY_REF_SPLICE

RASAL1^ENSG00000111344.11

chr12:113112086:-

CIB1^ENSG00000185043.12

chr15:90233703:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1131:37195:9211

NO_LDAS

0.0039

1.5656

1.9329

"[""INTERCHROMOSOMAL[chr12--chr15]""]"

chr12:113112086-chr15:90233703

False

Read

count

too

low:

FAIL

RASA4DP--CHMP7

1.0

0.0

INCL_NON_REF_SPLICE

RASA4DP^ENSG00000233297.4

chr7:102690064:-

CHMP7^ENSG00000147457.14

chr8:23246780:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2236:51441:28338

NO_LDAS

0.0039

1.7465

1.9329

"[""INTERCHROMOSOMAL[chr7--chr8]""]"

chr7:102690064-chr8:23246780

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RASA4--POLR2J

0.11

0.0

ONLY_REF_SPLICE

RASA4^ENSG00000105808.18

chr7:102583004:-

POLR2J^ENSG00000005075.15

chr7:102476270:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1265:19227:12896

YES_LDAS

0.0004

1.8256

1.7465

"[""INTRACHROMOSOMAL[chr7:0.09Mb]"",""NEIGHBORS[94900]""]"

chr7:102583004-chr7:102476270

True

pair|recurrent

breakpoints

Blacklisted

FAIL

RANBP2--IFT140

1.0

0.0

INCL_NON_REF_SPLICE

RANBP2^ENSG00000153201.16

chr2:108719678:+

IFT140^ENSG00000187535.14

chr16:1524063:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2309:38813:3270

NO_LDAS

0.0039

1.7968

1.8256

"[""INTERCHROMOSOMAL[chr2--chr16]""]"

chr2:108719678-chr16:1524063

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RANBP17--PGBD2

1.0

0.0

ONLY_REF_SPLICE

RANBP17^ENSG00000204764.14

chr5:170968377:+

PGBD2^ENSG00000185220.12

chr1:248917279:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1179:40034:26124

YES_LDAS

0.0039

1.6402

1.8295

"[""INTERCHROMOSOMAL[chr5--chr1]""]"

chr5:170968377-chr1:248917279

False

Read

count

too

low:

FAIL

RALGAPB--ADCY7

1.0

0.0

INCL_NON_REF_SPLICE

RALGAPB^ENSG00000170471.15

chr20:38562616:+

ADCY7^ENSG00000121281.13

chr16:50279578:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2365:34962:23083

NO_LDAS

0.0039

1.7465

1.9899

"[""INTERCHROMOSOMAL[chr20--chr16]""]"

chr20:38562616-chr16:50279578

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RACGAP1--ZMYM2

1.0

0.0

INCL_NON_REF_SPLICE

RACGAP1^ENSG00000161800.13

chr12:50016649:-

ZMYM2^ENSG00000121741.17

chr13:19993063:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1413:45908:21668

NO_LDAS

0.0039

1.8892

1.8323

"[""INTERCHROMOSOMAL[chr12--chr13]""]"

chr12:50016649-chr13:19993063

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RABGGTB--KCTD3

1.0

0.0

INCL_NON_REF_SPLICE

RABGGTB^ENSG00000137955.16

chr1:75794990:+

KCTD3^ENSG00000136636.13

chr1:215595356:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2107:30512:14284

NO_LDAS

0.0039

1.5656

1.8892

"[""INTRACHROMOSOMAL[chr1:139.77Mb]""]"

chr1:75794990-chr1:215595356

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

RAB30--KREMEN1

1.0

0.0

ONLY_REF_SPLICE

RAB30^ENSG00000137502.10

chr11:83060077:-

KREMEN1^ENSG00000183762.13

chr22:29137342:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1466:7205:19146

YES_LDAS

0.0039

1.9329

1.5656

"[""INTERCHROMOSOMAL[chr11--chr22]""]"

chr11:83060077-chr22:29137342

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

RAB2A--AC026412.1

1.0

0.0

INCL_NON_REF_SPLICE

RAB2A^ENSG00000104388.15

chr8:60517253:+

AC026412.1^ENSG00000188002.10

chr5:1602036:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1111:17811:5736

YES_LDAS

0.0039

1.9329

1.9656

"[""INTERCHROMOSOMAL[chr8--chr5]""]"

chr8:60517253-chr5:1602036

False

Read

count

too

low:

FAIL

RAB11FIP1--GPX4

1.0

0.0

INCL_NON_REF_SPLICE

RAB11FIP1^ENSG00000156675.16

chr8:37862130:-

GPX4^ENSG00000167468.18

chr19:1106242:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1250:44913:10640

NO_LDAS

0.0039

1.7819

1.9656

"[""INTERCHROMOSOMAL[chr8--chr19]""]"

chr8:37862130-chr19:1106242

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PTTG1IP--PER1

1.0

0.0

INCL_NON_REF_SPLICE

PTTG1IP^ENSG00000183255.12

chr21:44851544:-

PER1^ENSG00000179094.16

chr17:8140878:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2211:46741:8567

NO_LDAS

0.0039

1.9329

1.7465

"[""INTERCHROMOSOMAL[chr21--chr17]""]"

chr21:44851544-chr17:8140878

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PTPRN2-AS1--RBM38

1.0

0.0

INCL_NON_REF_SPLICE

PTPRN2-AS1^ENSG00000233038.6

chr7:157856063:+

RBM38^ENSG00000132819.17

chr20:57393279:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2471:5417:17394

NO_LDAS

0.0039

1.7819

"[""INTERCHROMOSOMAL[chr7--chr20]""]"

chr7:157856063-chr20:57393279

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PTPRM--ARHGEF34P

0.33

0.0

INCL_NON_REF_SPLICE

PTPRM^ENSG00000173482.17

chr18:8387221:+

ARHGEF34P^ENSG00000204959.4

chr7:144286031:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2267:1874:18179

NO_LDAS

0.0013

1.4566

1.8892

"[""INTERCHROMOSOMAL[chr18--chr7]""]"

chr18:8387221-chr7:144286031

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PTMA--LRP8

1.0

0.0

INCL_NON_REF_SPLICE

PTMA^ENSG00000187514.17

chr2:231711425:+

LRP8^ENSG00000157193.18

chr1:53273658:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2249:13410:10612

NO_LDAS

0.0039

1.7465

1.7819

"[""INTERCHROMOSOMAL[chr2--chr1]""]"

chr2:231711425-chr1:53273658

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PTK2--SUMF2

1.0

0.0

INCL_NON_REF_SPLICE

PTK2^ENSG00000169398.19

chr8:140674298:-

SUMF2^ENSG00000129103.19

chr7:56079702:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1160:5102:16259

NO_LDAS

0.0039

1.8323

1.9656

"[""INTERCHROMOSOMAL[chr8--chr7]""]"

chr8:140674298-chr7:56079702

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PTK2--FGFR1OP2

1.0

0.0

INCL_NON_REF_SPLICE

PTK2^ENSG00000169398.19

chr8:140789474:-

FGFR1OP2^ENSG00000111790.14

chr12:26961949:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2343:43303:15643

NO_LDAS

0.0039

1.8256

1.7968

"[""INTERCHROMOSOMAL[chr8--chr12]""]"

chr8:140789474-chr12:26961949

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PSMD7--LSM8

1.0

0.0

INCL_NON_REF_SPLICE

PSMD7^ENSG00000103035.11

chr16:74304596:+

LSM8^ENSG00000128534.8

chr7:118185654:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1106:28789:24106

NO_LDAS

0.0039

1.8062

1.9656

"[""INTERCHROMOSOMAL[chr16--chr7]""]"

chr16:74304596-chr7:118185654

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PSKH1--NYAP1

0.33

0.0

INCL_NON_REF_SPLICE

PSKH1^ENSG00000159792.10

chr16:67909039:+

NYAP1^ENSG00000166924.9

chr7:100494404:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2230:10522:24667

NO_LDAS

0.0013

1.9656

"[""INTERCHROMOSOMAL[chr16--chr7]""]"

chr16:67909039-chr7:100494404

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PRUNE2--KIDINS220

1.0

0.0

ONLY_REF_SPLICE

PRUNE2^ENSG00000106772.18

chr9:76846515:-

KIDINS220^ENSG00000134313.16

chr2:8751644:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1185:38950:21332

YES_LDAS

0.0039

1.9219

1.4716

"[""INTERCHROMOSOMAL[chr9--chr2]""]"

chr9:76846515-chr2:8751644

False

Read

count

too

low:

FAIL

PRPF8--OSBP2

1.0

0.0

INCL_NON_REF_SPLICE

PRPF8^ENSG00000174231.17

chr17:1651414:-

OSBP2^ENSG00000184792.16

chr22:30881700:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1109:20189:28800

NO_LDAS

0.0039

1.9329

1.4295

"[""INTERCHROMOSOMAL[chr17--chr22]""]"

chr17:1651414-chr22:30881700

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PRKAR1B--UVSSA

1.0

0.0

INCL_NON_REF_SPLICE

PRKAR1B^ENSG00000188191.15

chr7:680595:-

UVSSA^ENSG00000163945.19

chr4:1346252:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2258:36515:4895

NO_LDAS

0.0039

1.7232

1.5546

"[""INTERCHROMOSOMAL[chr7--chr4]""]"

chr7:680595-chr4:1346252

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PRKAG2--RHEB

1.0

0.0

ONLY_REF_SPLICE

PRKAG2^ENSG00000106617.15

chr7:151632069:-

RHEB^ENSG00000106615.10

chr7:151491014:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1395:37348:17436

YES_LDAS

0.0039

1.8323

1.9656

"[""INTRACHROMOSOMAL[chr7:0.04Mb]"",""NEIGHBORS[36004]""]"

chr7:151632069-chr7:151491014

True

pair|recurrent

breakpoints

Blacklisted

FAIL

PREP--RBM33

1.0

0.0

INCL_NON_REF_SPLICE

PREP^ENSG00000085377.15

chr6:105277512:-

RBM33^ENSG00000184863.11

chr7:155700773:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2336:12407:5596

NO_LDAS

0.0039

1.7968

1.7056

"[""INTERCHROMOSOMAL[chr6--chr7]""]"

chr6:105277512-chr7:155700773

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PPP3CB--MSS51

1.0

0.0

ONLY_REF_SPLICE

PPP3CB^ENSG00000107758.16

chr10:73444725:-

MSS51^ENSG00000166343.10

chr10:73428301:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1125:31847:3957

YES_LDAS

0.0039

1.9329

1.9656

"[""INTRACHROMOSOMAL[chr10:0.00Mb]"",""NEIGHBORS[2872]""]"

chr10:73444725-chr10:73428301

True

pair|recurrent

breakpoints

Blacklisted

FAIL

PPP3CA--GRK2

0.08

0.0

INCL_NON_REF_SPLICE

PPP3CA^ENSG00000138814.17

chr4:101347529:-

GRK2^ENSG00000173020.11

chr11:67266653:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1293:5344:19847

YES_LDAS

0.0003

1.053

0.9183

"[""INTERCHROMOSOMAL[chr4--chr11]""]"

chr4:101347529-chr11:67266653

False

Read

count

too

low:

FAIL

PPP2R5C--SUSD6

1.0

0.0

ONLY_REF_SPLICE

PPP2R5C^ENSG00000078304.19

chr14:101810036:+

SUSD6^ENSG00000100647.8

chr14:69703395:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1158:51304:15012

NO_LDAS

0.0039

1.8892

1.7232

"[""INTRACHROMOSOMAL[chr14:32.05Mb]""]"

chr14:101810036-chr14:69703395

False

Read

count

too

low:

FAIL

PPP1R3C--RTF1

1.0

0.0

ONLY_REF_SPLICE

PPP1R3C^ENSG00000119938.9

chr10:91632956:-

RTF1^ENSG00000137815.14

chr15:41438321:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1226:50478:29249

YES_LDAS

0.0039

1.9329

1.8256

"[""INTERCHROMOSOMAL[chr10--chr15]""]"

chr10:91632956-chr15:41438321

False

Read

count

too

low:

FAIL

PPP1R1A--DNAH9

1.0

0.0

INCL_NON_REF_SPLICE

PPP1R1A^ENSG00000135447.17

chr12:54588518:-

DNAH9^ENSG00000007174.18

chr17:11769259:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1152:33506:9127

NO_LDAS

0.0039

1.5546

1.7968

"[""INTERCHROMOSOMAL[chr12--chr17]""]"

chr12:54588518-chr17:11769259

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PPP1R12C--SLCO1A2

1.0

0.0

INCL_NON_REF_SPLICE

PPP1R12C^ENSG00000125503.13

chr19:55091650:-

SLCO1A2^ENSG00000084453.16

chr12:21274960:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1364:42752:11944

NO_LDAS

0.0039

1.5329

1.7819

"[""INTERCHROMOSOMAL[chr19--chr12]""]"

chr19:55091650-chr12:21274960

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PPFIA1--ITPR2

1.0

0.0

INCL_NON_REF_SPLICE

PPFIA1^ENSG00000131626.19

chr11:70324926:+

ITPR2^ENSG00000123104.12

chr12:26602706:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1292:44411:18431

NO_LDAS

0.0039

1.5058

1.6895

"[""INTERCHROMOSOMAL[chr11--chr12]""]"

chr11:70324926-chr12:26602706

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

POLR3A--AC090515.4

1.0

0.0

INCL_NON_REF_SPLICE

POLR3A^ENSG00000148606.13

chr10:78026169:-

AC090515.4^ENSG00000259353.1

chr15:58865023:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2467:51409:27721

NO_LDAS

0.0039

1.7819

1.7968

"[""INTERCHROMOSOMAL[chr10--chr15]""]"

chr10:78026169-chr15:58865023

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

POLR2J2--AC004951.2

0.5

0.0

INCL_NON_REF_SPLICE

POLR2J2^ENSG00000228049.7

chr7:102666077:-

AC004951.2^ENSG00000239556.4

chr7:43988247:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2172:18806:9590

NO_LDAS

0.0019

1.9086

1.7465

"[""INTRACHROMOSOMAL[chr7:58.68Mb]""]"

chr7:102666077-chr7:43988247

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

POLR2F--GLI3

1.0

0.0

ONLY_REF_SPLICE

POLR2F^ENSG00000100142.16

chr22:37986312:+

GLI3^ENSG00000106571.15

chr7:42223295:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1106:48100:3634

YES_LDAS

0.0039

1.5329

1.8323

"[""INTERCHROMOSOMAL[chr22--chr7]""]"

chr22:37986312-chr7:42223295

False

Read

count

too

low:

FAIL

PNPLA6--PPP2R5C

1.0

0.0

INCL_NON_REF_SPLICE

PNPLA6^ENSG00000032444.17

chr19:7550587:+

PPP2R5C^ENSG00000078304.19

chr14:101823683:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1265:43998:7067

NO_LDAS

0.0039

1.9329

1.9086

"[""INTERCHROMOSOMAL[chr19--chr14]""]"

chr19:7550587-chr14:101823683

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PNN--PHC2

1.0

0.0

INCL_NON_REF_SPLICE

PNN^ENSG00000100941.9

chr14:39181474:+

PHC2^ENSG00000134686.18

chr1:33375468:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2461:29550:17633

NO_LDAS

0.0039

1.9656

1.9219

"[""INTERCHROMOSOMAL[chr14--chr1]""]"

chr14:39181474-chr1:33375468

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PNLIPRP2--AL162231.1

1.0

0.0

INCL_NON_REF_SPLICE

PNLIPRP2^ENSG00000266200.6

chr10:116645142:+

AL162231.1^ENSG00000187186.15

chr9:34665139:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1268:34080:25395

NO_LDAS

0.0039

1.8892

1.8256

"[""INTERCHROMOSOMAL[chr10--chr9]""]"

chr10:116645142-chr9:34665139

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PNISR--GAB2

1.0

0.0

INCL_NON_REF_SPLICE

PNISR^ENSG00000132424.17

chr6:99402692:-

GAB2^ENSG00000033327.13

chr11:78221709:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2356:27454:8398

NO_LDAS

0.0039

1.6895

1.7819

"[""INTERCHROMOSOMAL[chr6--chr11]""]"

chr6:99402692-chr11:78221709

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PMS2P11--BAZ1B

1.0

0.0

INCL_NON_REF_SPLICE

PMS2P11^ENSG00000241350.1

chr7:77015855:+

BAZ1B^ENSG00000009954.11

chr7:73470483:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1246:10894:14858

YES_LDAS

0.0039

1.4566

1.9329

"[""INTRACHROMOSOMAL[chr7:3.49Mb]""]"

chr7:77015855-chr7:73470483

False

Read

count

too

low:

FAIL

PMS2CL--UPK3BL1

0.5

0.0

ONLY_REF_SPLICE

PMS2CL^ENSG00000187953.10

chr7:6711469:+

UPK3BL1^ENSG00000267368.1

chr7:102640773:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1191:47687:12896

NO_LDAS

0.0019

1.9329

1.7465

"[""INTRACHROMOSOMAL[chr7:95.88Mb]""]"

chr7:6711469-chr7:102640773

False

Read

count

too

low:

FAIL

PMS1--ADAMTS3

1.0

0.0

INCL_NON_REF_SPLICE

PMS1^ENSG00000064933.18

chr2:189854793:+

ADAMTS3^ENSG00000156140.10

chr4:72283428:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1415:1283:10234

NO_LDAS

0.0039

1.3996

1.8892

"[""INTERCHROMOSOMAL[chr2--chr4]""]"

chr2:189854793-chr4:72283428

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PLTP--AL162588.1

0.17

0.0

ONLY_REF_SPLICE

PLTP^ENSG00000100979.15

chr20:45902267:-

AL162588.1^ENSG00000285115.1

chr9:113060507:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2353:7925:17394

NO_LDAS

0.0007

1.8323

1.7819

"[""INTERCHROMOSOMAL[chr20--chr9]""]"

chr20:45902267-chr9:113060507

False

Read

count

too

low:

FAIL

PLEKHO2--ANKDD1A

1.0

0.0

ONLY_REF_SPLICE

PLEKHO2^ENSG00000241839.10

chr15:64855037:+

ANKDD1A^ENSG00000166839.17

chr15:64926066:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1280:40067:12140

YES_LDAS

0.0039

1.8256

1.9899

"[""Babiceanu_Normal"",""ChimerSeq"",""Greger_Normal"",""INTRACHROMOSOMAL[chr15:0.04Mb]"",""NEIGHBORS[43900]""]"

chr15:64855037-chr15:64926066

True

pair|recurrent

breakpoints

Blacklisted

FAIL

PLEKHH1--AC012301.2

1.0

0.0

ONLY_REF_SPLICE

PLEKHH1^ENSG00000054690.14

chr14:67586097:+

AC012301.2^ENSG00000286777.1

chr18:57047116:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2335:48181:5624

NO_LDAS

0.0039

1.9656

1.8892

"[""INTERCHROMOSOMAL[chr14--chr18]""]"

chr14:67586097-chr18:57047116

False

Read

count

too

low:

FAIL

PLEKHG3--DEPTOR

1.0

0.0

ONLY_REF_SPLICE

PLEKHG3^ENSG00000126822.17

chr14:64737375:+

DEPTOR^ENSG00000155792.10

chr8:120049576:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1432:50495:3102

NO_LDAS

0.0039

1.7056

1.7465

"[""INTERCHROMOSOMAL[chr14--chr8]""]"

chr14:64737375-chr8:120049576

False

Read

count

too

low:

FAIL

PLEKHA7--5_8S_rRNA

0.1

0.0

INCL_NON_REF_SPLICE

PLEKHA7^ENSG00000166689.16

chr11:16801044:-

5_8S_rRNA^ENSG00000276871.1

chr22:11249907:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2339:21128:12266

YES_LDAS

0.0004

1.8295

1.8256

"[""INTERCHROMOSOMAL[chr11--chr20]""]"

chr11:16801044-chr22:11249907

False

Read

count

too

low:

FAIL

PLEKHA7--5_8S_rRNA

0.1

0.0

INCL_NON_REF_SPLICE

PLEKHA7^ENSG00000166689.16

chr11:16801044:-

5_8S_rRNA^ENSG00000277739.1

chr21:8256833:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2339:21128:12266

YES_LDAS

0.0004

1.8295

1.9329

"[""INTERCHROMOSOMAL[chr11--chr20]""]"

chr11:16801044-chr21:8256833

False

Read

count

too

low:

FAIL

PLEKHA7--5_8S_rRNA

0.1

0.0

INCL_NON_REF_SPLICE

PLEKHA7^ENSG00000166689.16

chr11:16801044:-

5_8S_rRNA^ENSG00000275877.1

chr20:30485024:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2339:21128:12266

YES_LDAS

0.0004

1.8295

1.8256

"[""INTERCHROMOSOMAL[chr11--chr20]""]"

chr11:16801044-chr20:30485024

False

Read

count

too

low:

FAIL

PLEKHA7--5_8S_rRNA

0.1

0.0

INCL_NON_REF_SPLICE

PLEKHA7^ENSG00000166689.16

chr11:16801044:-

5_8S_rRNA^ENSG00000283568.1

chr20:29297194:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2339:21128:12266

YES_LDAS

0.0004

1.8295

1.8256

"[""INTERCHROMOSOMAL[chr11--chr20]""]"

chr11:16801044-chr20:29297194

False

Read

count

too

low:

FAIL

PLEKHA7--5_8S_rRNA

0.1

0.0

INCL_NON_REF_SPLICE

PLEKHA7^ENSG00000166689.16

chr11:16801044:-

5_8S_rRNA^ENSG00000283274.1

chr14:16057524:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2339:21128:12266

YES_LDAS

0.0004

1.8295

1.8256

"[""INTERCHROMOSOMAL[chr11--chr20]""]"

chr11:16801044-chr14:16057524

False

Read

count

too

low:

FAIL

PLD3--C16orf46

1.0

0.0

INCL_NON_REF_SPLICE

PLD3^ENSG00000105223.20

chr19:40366510:+

C16orf46^ENSG00000166455.14

chr16:81062065:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2240:28498:28926

NO_LDAS

0.0039

1.9656

1.8295

"[""INTERCHROMOSOMAL[chr19--chr16]""]"

chr19:40366510-chr16:81062065

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PLCB1--TRIB1

1.0

0.0

ONLY_REF_SPLICE

PLCB1^ENSG00000182621.18

chr20:8150371:+

TRIB1^ENSG00000173334.4

chr8:125436006:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2181:30739:9435

NO_LDAS

0.0039

1.5546

1.9086

"[""INTERCHROMOSOMAL[chr20--chr8]""]"

chr20:8150371-chr8:125436006

False

Read

count

too

low:

FAIL

PKD1--JPH4

1.0

0.0

INCL_NON_REF_SPLICE

PKD1^ENSG00000008710.20

chr16:2111804:-

JPH4^ENSG00000092051.17

chr14:23575980:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1130:37122:19258

NO_LDAS

0.0039

1.8892

1.7968

"[""INTERCHROMOSOMAL[chr16--chr14]""]"

chr16:2111804-chr14:23575980

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PINLYP--AP001972.3

1.0

0.0

INCL_NON_REF_SPLICE

PINLYP^ENSG00000234465.11

chr19:43576110:+

AP001972.3^ENSG00000255136.3

chr11:75241141:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1292:47833:29319

NO_LDAS

0.0039

1.4256

1.7465

"[""INTERCHROMOSOMAL[chr19--chr11]""]"

chr19:43576110-chr11:75241141

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PINCR--PIEZO1

1.0

0.0

INCL_NON_REF_SPLICE

PINCR^ENSG00000224294.1

chrX:43226115:+

PIEZO1^ENSG00000103335.22

chr16:88722066:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1248:45026:24148

NO_LDAS

0.0039

1.9329

1.6402

"[""INTERCHROMOSOMAL[chrX--chr16]""]"

chrX:43226115-chr16:88722066

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PIM3--PRDX1

0.5

0.0

INCL_NON_REF_SPLICE

PIM3^ENSG00000198355.5

chr22:49963043:+

PRDX1^ENSG00000117450.15

chr1:45521903:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2262:4592:18459

NO_LDAS

0.0019

1.3753

1.6895

"[""INTERCHROMOSOMAL[chr22--chr1]""]"

chr22:49963043-chr1:45521903

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PIM3--CD151

1.0

0.0

INCL_NON_REF_SPLICE

PIM3^ENSG00000198355.5

chr22:49962713:+

CD151^ENSG00000177697.19

chr11:837508:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1326:8281:26614

NO_LDAS

0.0039

1.7465

1.9656

"[""INTERCHROMOSOMAL[chr22--chr11]""]"

chr22:49962713-chr11:837508

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PIK3R1--PIK3R2

1.0

0.0

ONLY_REF_SPLICE

PIK3R1^ENSG00000145675.15

chr5:68281006:+

PIK3R2^ENSG00000105647.19

chr19:18162202:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1347:38958:12490

NO_LDAS

0.0039

1.8062

1.8295

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr5--chr19]""]"

chr5:68281006-chr19:18162202

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

PIGO--CAMTA2

1.0

0.0

INCL_NON_REF_SPLICE

PIGO^ENSG00000165282.14

chr9:35091696:-

CAMTA2^ENSG00000108509.21

chr17:4972526:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2264:22074:20855

NO_LDAS

0.0039

1.7232

1.3383

"[""INTERCHROMOSOMAL[chr9--chr17]""]"

chr9:35091696-chr17:4972526

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PIEZO1--ASPSCR1

1.0

0.0

INCL_NON_REF_SPLICE

PIEZO1^ENSG00000103335.22

chr16:88723095:-

ASPSCR1^ENSG00000169696.16

chr17:81996790:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2310:34120:20141

NO_LDAS

0.0039

1.4566

1.5058

"[""INTERCHROMOSOMAL[chr16--chr17]""]"

chr16:88723095-chr17:81996790

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PI4KB--ZSCAN29

1.0

0.0

INCL_NON_REF_SPLICE

PI4KB^ENSG00000143393.16

chr1:151327405:-

ZSCAN29^ENSG00000140265.12

chr15:43371007:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2361:33133:13023

NO_LDAS

0.0039

1.5628

1.231

"[""INTERCHROMOSOMAL[chr1--chr15]""]"

chr1:151327405-chr15:43371007

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PHB--MTRNR2L6

0.09

0.0

INCL_NON_REF_SPLICE

PHB^ENSG00000167085.13

chr17:49404858:-

MTRNR2L6^ENSG00000270672.1

chr7:142667191:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2224:50033:19230

NO_LDAS

0.0003

1.3996

1.9086

"[""INTERCHROMOSOMAL[chr17--chr7]""]"

chr17:49404858-chr7:142667191

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PHB--MTRNR2L4

0.09

0.0

INCL_NON_REF_SPLICE

PHB^ENSG00000167085.13

chr17:49404858:-

MTRNR2L4^ENSG00000232196.4

chr16:3371942:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2224:50033:19230

NO_LDAS

0.0003

1.3996

1.9086

"[""INTERCHROMOSOMAL[chr17--chr16]""]"

chr17:49404858-chr16:3371942

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PHB--MTRNR2L11

0.09

0.0

INCL_NON_REF_SPLICE

PHB^ENSG00000167085.13

chr17:49404858:-

MTRNR2L11^ENSG00000270188.1

chr1:237944366:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2224:50033:19230

NO_LDAS

0.0003

1.3996

1.9086

"[""INTERCHROMOSOMAL[chr17--chr1]""]"

chr17:49404858-chr1:237944366

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PHB--MTRNR2L10

0.09

0.0

INCL_NON_REF_SPLICE

PHB^ENSG00000167085.13

chr17:49404858:-

MTRNR2L10^ENSG00000256045.3

chrX:55182034:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2224:50033:19230

NO_LDAS

0.0003

1.3996

1.9086

"[""INTERCHROMOSOMAL[chr17--chrX]""]"

chr17:49404858-chrX:55182034

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PHB--AC025627.3

0.09

0.0

INCL_NON_REF_SPLICE

PHB^ENSG00000167085.13

chr17:49404858:-

AC025627.3^ENSG00000266179.2

chr17:19600888:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2224:50033:19230

NO_LDAS

0.0003

1.3996

1.9086

"[""INTRACHROMOSOMAL[chr17:29.80Mb]""]"

chr17:49404858-chr17:19600888

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PGAM1P5--WRN

1.0

0.0

ONLY_REF_SPLICE

PGAM1P5^ENSG00000257150.3

chr12:95671141:+

WRN^ENSG00000165392.11

chr8:31064289:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1370:4673:13611

YES_LDAS

0.0039

1.9656

"[""INTERCHROMOSOMAL[chr12--chr8]""]"

chr12:95671141-chr8:31064289

False

Read

count

too

low:

FAIL

PER2--PER1

1.0

0.0

ONLY_REF_SPLICE

PER2^ENSG00000132326.12

chr2:238258497:-

PER1^ENSG00000179094.16

chr17:8146502:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1366:27980:2948

NO_LDAS

0.0039

1.9329

1.9219

"[""INTERCHROMOSOMAL[chr2--chr17]""]"

chr2:238258497-chr17:8146502

False

Read

count

too

low:

FAIL

PDZRN3--SUMF1

1.0

0.0

ONLY_REF_SPLICE

PDZRN3^ENSG00000121440.15

chr3:73602354:-

SUMF1^ENSG00000144455.14

chr3:4418132:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1215:7666:12574

YES_LDAS

0.0039

1.8256

1.9656

"[""INTRACHROMOSOMAL[chr3:68.92Mb]""]"

chr3:73602354-chr3:4418132

False

Read

count

too

low:

FAIL

PDXDC1--RIPK1

1.0

0.0

INCL_NON_REF_SPLICE

PDXDC1^ENSG00000179889.19

chr16:15001856:+

RIPK1^ENSG00000137275.16

chr6:3106798:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1269:10231:14466

NO_LDAS

0.0039

1.4566

1.7465

"[""INTERCHROMOSOMAL[chr16--chr6]""]"

chr16:15001856-chr6:3106798

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

PDXDC1--NPIPB14P

0.5

0.0

ONLY_REF_SPLICE

PDXDC1^ENSG00000179889.19

chr16:15030056:+

NPIPB14P^ENSG00000226232.8

chr16:69982757:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1118:20400:6269

YES_LDAS

0.0019

1.9329

"[""INTRACHROMOSOMAL[chr16:54.84Mb]""]"

chr16:15030056-chr16:69982757

False

Read

count

too

low:

FAIL

PDLIM1--PVT1

1.0

0.0

INCL_NON_REF_SPLICE

PDLIM1^ENSG00000107438.9

chr10:95268778:-

PVT1^ENSG00000249859.12

chr8:127943147:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1406:1866:6367

NO_LDAS

0.0039

1.8295

1.9329

"[""INTERCHROMOSOMAL[chr10--chr8]""]"

chr10:95268778-chr8:127943147

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PDK2--TLN1

1.0

0.0

INCL_NON_REF_SPLICE

PDK2^ENSG00000005882.12

chr17:50109400:+

TLN1^ENSG00000137076.21

chr9:35711313:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1479:28304:12112

NO_LDAS

0.0039

1.9329

1.7968

"[""INTERCHROMOSOMAL[chr17--chr9]""]"

chr17:50109400-chr9:35711313

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PDE8B--SNED1

1.0

0.0

INCL_NON_REF_SPLICE

PDE8B^ENSG00000113231.14

chr5:77211154:+

SNED1^ENSG00000162804.14

chr2:241049897:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2306:48254:28983

NO_LDAS

0.0039

1.6895

1.5219

"[""INTERCHROMOSOMAL[chr5--chr2]""]"

chr5:77211154-chr2:241049897

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PDE5A--AC110079.1

0.08

0.0

INCL_NON_REF_SPLICE

PDE5A^ENSG00000138735.16

chr4:119498563:-

AC110079.1^ENSG00000260404.3

chr4:118597094:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2253:38165:23532

NO_LDAS

0.0003

1.8062

1.7968

"[""INTRACHROMOSOMAL[chr4:0.86Mb]""]"

chr4:119498563-chr4:118597094

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PDE4DIP--MAGI2-AS3

0.5

0.0

INCL_NON_REF_SPLICE

PDE4DIP^ENSG00000178104.19

chr1:148960785:+

MAGI2-AS3^ENSG00000234456.8

chr7:79462177:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1152:24752:23252

NO_LDAS

0.0019

1.5656

1.7056

"[""INTERCHROMOSOMAL[chr1--chr7]""]"

chr1:148960785-chr7:79462177

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PDE3B--GPT2

1.0

0.0

ONLY_REF_SPLICE

PDE3B^ENSG00000152270.9

chr11:14645053:+

GPT2^ENSG00000166123.14

chr16:46922242:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1239:37009:23041

YES_LDAS

0.0039

1.9219

1.7465

"[""INTERCHROMOSOMAL[chr11--chr16]""]"

chr11:14645053-chr16:46922242

False

Read

count

too

low:

FAIL

PDE3B--CASP4LP

0.5

0.0

INCL_NON_REF_SPLICE

PDE3B^ENSG00000152270.9

chr11:14861370:+

CASP4LP^ENSG00000235505.7

chr11:104908897:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2409:2197:2906

NO_LDAS

0.0019

1.8256

1.9329

"[""INTRACHROMOSOMAL[chr11:90.03Mb]""]"

chr11:14861370-chr11:104908897

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PDE3B--ANP32E

0.5

0.0

INCL_NON_REF_SPLICE

PDE3B^ENSG00000152270.9

chr11:14861370:+

ANP32E^ENSG00000143401.15

chr1:150235780:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2409:2197:2906

NO_LDAS

0.0019

1.8256

1.4566

"[""INTERCHROMOSOMAL[chr11--chr1]""]"

chr11:14861370-chr1:150235780

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PCNX3--OAS2

0.5

0.0

INCL_NON_REF_SPLICE

PCNX3^ENSG00000197136.4

chr11:65636689:+

OAS2^ENSG00000111335.14

chr12:112978504:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2306:13637:29053

NO_LDAS

0.0019

1.6895

1.9656

"[""INTERCHROMOSOMAL[chr11--chr12]""]"

chr11:65636689-chr12:112978504

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PCMTD1--RB1CC1

1.0

0.0

ONLY_REF_SPLICE

PCMTD1^ENSG00000168300.14

chr8:51845661:-

RB1CC1^ENSG00000023287.13

chr8:52645867:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1281:49411:6157

NO_LDAS

0.0039

1.7819

1.8323

"[""TumorFusionsNAR2018"",""ChimerSeq"",""INTRACHROMOSOMAL[chr8:0.72Mb]""]"

chr8:51845661-chr8:52645867

False

Read

count

too

low:

FAIL

PCGF3--S100A1

1.0

0.0

INCL_NON_REF_SPLICE

PCGF3^ENSG00000185619.18

chr4:705935:+

S100A1^ENSG00000160678.12

chr1:153630509:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1145:32761:4363

YES_LDAS

0.0039

1.2729

1.9899

"[""INTERCHROMOSOMAL[chr4--chr1]""]"

chr4:705935-chr1:153630509

False

Read

count

too

low:

FAIL

PCDH17--AKT2

1.0

0.0

ONLY_REF_SPLICE

PCDH17^ENSG00000118946.12

chr13:57635111:+

AKT2^ENSG00000105221.18

chr19:40265351:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1275:49807:12924

YES_LDAS

0.0039

1.9086

1.8892

"[""INTERCHROMOSOMAL[chr13--chr19]""]"

chr13:57635111-chr19:40265351

False

Read

count

too

low:

FAIL

PCBP1-AS1--CNTNAP3

0.33

0.0

ONLY_REF_SPLICE

PCBP1-AS1^ENSG00000179818.14

chr2:70018015:-

CNTNAP3^ENSG00000106714.17

chr9:39171630:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1404:34574:22803

YES_LDAS

0.0013

1.9329

1.9656

"[""INTERCHROMOSOMAL[chr2--chr9]""]"

chr2:70018015-chr9:39171630

False

Read

count

too

low:

FAIL

PC--PKN1

1.0

0.0

INCL_NON_REF_SPLICE

PC^ENSG00000173599.15

chr11:66849611:-

PKN1^ENSG00000123143.13

chr19:14441224:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1323:40471:11131

NO_LDAS

0.0039

1.7465

1.7232

"[""INTERCHROMOSOMAL[chr11--chr19]""]"

chr11:66849611-chr19:14441224

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PBXIP1--CTCF

1.0

0.0

ONLY_REF_SPLICE

PBXIP1^ENSG00000163346.17

chr1:154956069:-

CTCF^ENSG00000102974.16

chr16:67610824:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2250:39856:22845

YES_LDAS

0.0039

1.9656

1.5628

"[""INTERCHROMOSOMAL[chr1--chr16]""]"

chr1:154956069-chr16:67610824

False

Read

count

too

low:

FAIL

PAXX--NKX2-1

1.0

0.0

INCL_NON_REF_SPLICE

PAXX^ENSG00000148362.11

chr9:136993411:+

NKX2-1^ENSG00000136352.19

chr14:36520605:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1158:8669:23980

NO_LDAS

0.0039

1.9086

1.5546

"[""INTERCHROMOSOMAL[chr9--chr14]""]"

chr9:136993411-chr14:36520605

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PAX9--PRKAG2

0.25

0.0

INCL_NON_REF_SPLICE

PAX9^ENSG00000198807.13

chr14:36662093:+

PRKAG2^ENSG00000106617.15

chr7:151753054:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1233:9511:5680

NO_LDAS

0.001

1.9219

1.5546

"[""INTERCHROMOSOMAL[chr14--chr7]""]"

chr14:36662093-chr7:151753054

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PAX9--ERC1

0.25

0.0

INCL_NON_REF_SPLICE

PAX9^ENSG00000198807.13

chr14:36662093:+

ERC1^ENSG00000082805.20

chr12:1257148:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1233:9511:5680

NO_LDAS

0.001

1.9219

1.8892

"[""INTERCHROMOSOMAL[chr14--chr12]""]"

chr14:36662093-chr12:1257148

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PAX9--CLPB

0.25

0.0

INCL_NON_REF_SPLICE

PAX9^ENSG00000198807.13

chr14:36662093:+

CLPB^ENSG00000162129.14

chr11:72288925:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1233:9511:5680

NO_LDAS

0.001

1.9219

1.8295

"[""INTERCHROMOSOMAL[chr14--chr11]""]"

chr14:36662093-chr11:72288925

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PAX9--CHL1

0.25

0.0

INCL_NON_REF_SPLICE

PAX9^ENSG00000198807.13

chr14:36662093:+

CHL1^ENSG00000134121.10

chr3:196792:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1233:9511:5680

NO_LDAS

0.001

1.9219

1.7465

"[""INTERCHROMOSOMAL[chr14--chr3]""]"

chr14:36662093-chr3:196792

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

PARD3--NPIPB3

0.5

0.0

INCL_NON_REF_SPLICE

PARD3^ENSG00000148498.16

chr10:34450317:-

NPIPB3^ENSG00000169246.16

chr16:21431567:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2414:16347:8945

YES_LDAS

0.0019

1.3383

1.7819

"[""INTERCHROMOSOMAL[chr10--chr16]""]"

chr10:34450317-chr16:21431567

False

Read

count

too

low:

FAIL

OXSM--CRYAB

1.0

0.0

INCL_NON_REF_SPLICE

OXSM^ENSG00000151093.8

chr3:25783228:+

CRYAB^ENSG00000109846.9

chr11:111908838:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2470:9260:25816

NO_LDAS

0.0039

1.2419

1.8256

"[""INTERCHROMOSOMAL[chr3--chr11]""]"

chr3:25783228-chr11:111908838

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

OTULIN--EPS8

1.0

0.0

INCL_NON_REF_SPLICE

OTULIN^ENSG00000154124.5

chr5:14693094:+

EPS8^ENSG00000151491.14

chr12:15682972:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2135:31750:4629

YES_LDAS

0.0039

1.7819

1.5546

"[""INTERCHROMOSOMAL[chr5--chr12]""]"

chr5:14693094-chr12:15682972

False

Read

count

too

low:

FAIL

OR51S1--TP53I11

1.0

0.0

INCL_NON_REF_SPLICE

OR51S1^ENSG00000176922.4

chr11:4848669:-

TP53I11^ENSG00000175274.19

chr11:44933050:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1483:39889:14270

NO_LDAS

0.0039

1.8295

1.4256

"[""INTRACHROMOSOMAL[chr11:40.04Mb]""]"

chr11:4848669-chr11:44933050

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

OR2C3--SLFN13

1.0

0.0

INCL_NON_REF_SPLICE

OR2C3^ENSG00000196242.10

chr1:247527410:-

SLFN13^ENSG00000154760.14

chr17:35440792:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2401:32122:17184

NO_LDAS

0.0039

1.5329

1.7819

"[""INTERCHROMOSOMAL[chr1--chr17]""]"

chr1:247527410-chr17:35440792

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

OPN3--CLEC4A

1.0

0.0

ONLY_REF_SPLICE

OPN3^ENSG00000054277.14

chr1:241614043:-

CLEC4A^ENSG00000111729.15

chr12:8125561:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1107:49847:26306

NO_LDAS

0.0039

1.9656

1.9086

"[""INTERCHROMOSOMAL[chr1--chr12]""]"

chr1:241614043-chr12:8125561

False

Read

count

too

low:

FAIL

OPHN1--DMD

1.0

0.0

ONLY_REF_SPLICE

OPHN1^ENSG00000079482.14

chrX:68432867:-

DMD^ENSG00000198947.17

chrX:31134194:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1290:47081:10304

NO_LDAS

0.0039

1.9656

1.9329

"[""INTRACHROMOSOMAL[chrX:34.61Mb]""]"

chrX:68432867-chrX:31134194

False

Read

count

too

low:

FAIL

OFD1--TXLNG

1.0

0.0

ONLY_REF_SPLICE

OFD1^ENSG00000046651.15

chrX:13761211:+

TXLNG^ENSG00000086712.13

chrX:16818574:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1111:30820:24877

YES_LDAS

0.0039

1.5329

1.9086

"[""INTRACHROMOSOMAL[chrX:3.02Mb]""]"

chrX:13761211-chrX:16818574

False

Read

count

too

low:

FAIL

OAS2--FAT4

1.0

0.0

INCL_NON_REF_SPLICE

OAS2^ENSG00000111335.14

chr12:112987308:+

FAT4^ENSG00000196159.14

chr4:125408681:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2147:36442:6507

NO_LDAS

0.0039

1.8892

1.6895

"[""INTERCHROMOSOMAL[chr12--chr4]""]"

chr12:112987308-chr4:125408681

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NXPH1--QTRT1

1.0

0.0

INCL_NON_REF_SPLICE

NXPH1^ENSG00000122584.13

chr7:8433956:+

QTRT1^ENSG00000213339.9

chr19:10712953:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2278:31119:3676

NO_LDAS

0.0039

1.6895

1.7968

"[""INTERCHROMOSOMAL[chr7--chr19]""]"

chr7:8433956-chr19:10712953

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NUP160--LATS2

0.25

0.0

INCL_NON_REF_SPLICE

NUP160^ENSG00000030066.13

chr11:47803509:-

LATS2^ENSG00000150457.9

chr13:20983557:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1359:16929:15811

NO_LDAS

0.001

1.9086

"[""INTERCHROMOSOMAL[chr11--chr13]""]"

chr11:47803509-chr13:20983557

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NUP153--CD2AP

1.0

0.0

ONLY_REF_SPLICE

NUP153^ENSG00000124789.12

chr6:17706277:-

CD2AP^ENSG00000198087.7

chr6:47503280:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1315:41725:5932

YES_LDAS

0.0039

1.7819

1.7465

"[""INTRACHROMOSOMAL[chr6:29.77Mb]""]"

chr6:17706277-chr6:47503280

False

Read

count

too

low:

FAIL

NTHL1--AC022382.2

1.0

0.0

INCL_NON_REF_SPLICE

NTHL1^ENSG00000065057.9

chr16:2047709:-

AC022382.2^ENSG00000287878.1

chr3:9695171:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1373:24696:2667

NO_LDAS

0.0039

1.7465

1.4295

"[""INTERCHROMOSOMAL[chr16--chr3]""]"

chr16:2047709-chr3:9695171

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NSUN5P1--AHSA2P

1.0

0.0

ONLY_REF_SPLICE

NSUN5P1^ENSG00000223705.9

chr7:75410726:+

AHSA2P^ENSG00000173209.23

chr2:61178981:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2385:31426:27497

YES_LDAS

0.0039

1.7819

1.7465

"[""INTERCHROMOSOMAL[chr7--chr2]""]"

chr7:75410726-chr2:61178981

False

Read

count

too

low:

FAIL

NSFL1C--ZDHHC4

1.0

0.0

INCL_NON_REF_SPLICE

NSFL1C^ENSG00000088833.18

chr20:1455107:-

ZDHHC4^ENSG00000136247.15

chr7:6578675:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1232:15950:11902

NO_LDAS

0.0039

1.6895

1.9086

"[""INTERCHROMOSOMAL[chr20--chr7]""]"

chr20:1455107-chr7:6578675

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NRSN2-AS1--C20orf96

1.0

0.0

ONLY_REF_SPLICE

NRSN2-AS1^ENSG00000225377.6

chr20:348100:-

C20orf96^ENSG00000196476.12

chr20:289676:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1155:50656:11733

YES_LDAS

0.0039

1.9899

1.8892

"[""INTRACHROMOSOMAL[chr20:0.03Mb]"",""NEIGHBORS[26082]""]"

chr20:348100-chr20:289676

True

pair|recurrent

breakpoints

Blacklisted

FAIL

NRIP1--LINC02246

1.0

0.0

ONLY_REF_SPLICE

NRIP1^ENSG00000180530.11

chr21:15064745:-

LINC02246^ENSG00000281903.2

chr21:14857708:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2291:29687:4391

NO_LDAS

0.0039

1.2729

1.5546

"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr21:0.04Mb]"",""NEIGHBORS[42683]""]"

chr21:15064745-chr21:14857708

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

NPTN--SATB1-AS1

1.0

0.0

INCL_NON_REF_SPLICE

NPTN^ENSG00000156642.17

chr15:73633566:-

SATB1-AS1^ENSG00000228956.8

chr3:18445284:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1154:10522:16764

NO_LDAS

0.0039

1.2419

1.231

"[""INTERCHROMOSOMAL[chr15--chr3]""]"

chr15:73633566-chr3:18445284

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NPTN--LPP

0.5

0.0

ONLY_REF_SPLICE

NPTN^ENSG00000156642.17

chr15:73587524:-

LPP^ENSG00000145012.13

chr3:188609161:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1160:12286:11103

NO_LDAS

0.0019

1.8892

1.9656

"[""INTERCHROMOSOMAL[chr15--chr3]""]"

chr15:73587524-chr3:188609161

False

Read

count

too

low:

FAIL

NPM3--RN7SL144P

0.33

0.0

INCL_NON_REF_SPLICE

NPM3^ENSG00000107833.10

chr10:101783325:-

RN7SL144P^ENSG00000242559.3

chrX:41683266:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2127:23523:17927

NO_LDAS

0.0013

1.4716

1.7819

"[""INTERCHROMOSOMAL[chr10--chrX]""]"

chr10:101783325-chrX:41683266

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NPIPB3--PDXDC2P

0.33

0.0

ONLY_REF_SPLICE

NPIPB3^ENSG00000169246.16

chr16:21421806:-

PDXDC2P^ENSG00000255185.6

chr16:70031968:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1136:7334:25536

YES_LDAS

0.0013

1.9656

1.5058

"[""INTRACHROMOSOMAL[chr16:48.56Mb]""]"

chr16:21421806-chr16:70031968

False

Read

count

too

low:

FAIL

NPIPB15--TRIM72

1.0

0.0

INCL_NON_REF_SPLICE

NPIPB15^ENSG00000196436.8

chr16:74378039:+

TRIM72^ENSG00000177238.14

chr16:31231208:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1108:1526:17577

YES_LDAS

0.0039

1.5546

1.8892

"[""INTRACHROMOSOMAL[chr16:43.15Mb]""]"

chr16:74378039-chr16:31231208

False

Read

count

too

low:

FAIL

NOTCH3--PML

1.0

0.0

INCL_NON_REF_SPLICE

NOTCH3^ENSG00000074181.9

chr19:15185536:-

PML^ENSG00000140464.20

chr15:73994870:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2476:39622:23532

NO_LDAS

0.0039

1.6049

1.8295

"[""INTERCHROMOSOMAL[chr19--chr15]""]"

chr19:15185536-chr15:73994870

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NOTCH2--AC126177.2

1.0

0.0

INCL_NON_REF_SPLICE

NOTCH2^ENSG00000134250.20

chr1:119916083:-

AC126177.2^ENSG00000257392.1

chr12:107889756:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2322:10449:22411

NO_LDAS

0.0039

1.9329

1.8892

"[""INTERCHROMOSOMAL[chr1--chr12]""]"

chr1:119916083-chr12:107889756

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NOS1AP--DLX4

1.0

0.0

INCL_NON_REF_SPLICE

NOS1AP^ENSG00000198929.13

chr1:162287436:+

DLX4^ENSG00000108813.11

chr17:49974079:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2210:1429:1294

NO_LDAS

0.0039

0.8366

1.5329

"[""INTERCHROMOSOMAL[chr1--chr17]""]"

chr1:162287436-chr17:49974079

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NOMO2--NR2C2

0.5

0.0

INCL_NON_REF_SPLICE

NOMO2^ENSG00000185164.14

chr16:18434719:-

NR2C2^ENSG00000177463.15

chr3:15003913:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2327:11687:20463

NO_LDAS

0.0019

1.7056

1.8892

"[""INTERCHROMOSOMAL[chr16--chr3]""]"

chr16:18434719-chr3:15003913

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NOL4--YLPM1

0.5

0.0

ONLY_REF_SPLICE

NOL4^ENSG00000101746.16

chr18:34222990:-

YLPM1^ENSG00000119596.18

chr14:74855217:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1255:19194:9646

YES_LDAS

0.0019

1.8892

1.9329

"[""INTERCHROMOSOMAL[chr18--chr14]""]"

chr18:34222990-chr14:74855217

False

Read

count

too

low:

FAIL

NME4--HBE1

1.0

0.0

INCL_NON_REF_SPLICE

NME4^ENSG00000103202.13

chr16:399480:+

HBE1^ENSG00000213931.7

chr11:5269588:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1101:19736:9435

NO_LDAS

0.0039

1.8062

1.9086

"[""INTERCHROMOSOMAL[chr16--chr11]""]"

chr16:399480-chr11:5269588

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NME3--NME2

1.0

0.0

ONLY_REF_SPLICE

NME3^ENSG00000103024.7

chr16:1771070:-

NME2^ENSG00000243678.12

chr17:51169937:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1465:42121:19510

NO_LDAS

0.0039

1.7465

1.5546

"[""INTERCHROMOSOMAL[chr16--chr17]""]"

chr16:1771070-chr17:51169937

False

Read

count

too

low:

FAIL

NKX2-8--GMIP

1.0

0.0

INCL_NON_REF_SPLICE

NKX2-8^ENSG00000136327.7

chr14:36581066:-

GMIP^ENSG00000089639.11

chr19:19643631:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1297:22633:17983

NO_LDAS

0.0039

0.9183

1.231

"[""INTERCHROMOSOMAL[chr14--chr19]""]"

chr14:36581066-chr19:19643631

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NFATC2--AL021920.2

0.25

0.0

ONLY_REF_SPLICE

NFATC2^ENSG00000101096.20

chr20:51516784:-

AL021920.2^ENSG00000280114.1

chr1:16686755:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1231:32834:16428

NO_LDAS

0.001

1.9329

1.9899

"[""INTERCHROMOSOMAL[chr20--chr1]""]"

chr20:51516784-chr1:16686755

False

Read

count

too

low:

FAIL

NDRG1--DIDO1

1.0

0.0

INCL_NON_REF_SPLICE

NDRG1^ENSG00000104419.17

chr8:133247873:-

DIDO1^ENSG00000101191.17

chr20:62881018:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1107:24785:24793

NO_LDAS

0.0039

1.7968

1.9219

"[""INTERCHROMOSOMAL[chr8--chr20]""]"

chr8:133247873-chr20:62881018

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NCK1--RYBP

1.0

0.0

ONLY_REF_SPLICE

NCK1^ENSG00000158092.7

chr3:136862319:+

RYBP^ENSG00000163602.11

chr3:72379427:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2173:10983:21878

YES_LDAS

0.0039

1.8892

1.7968

"[""INTRACHROMOSOMAL[chr3:64.42Mb]""]"

chr3:136862319-chr3:72379427

False

Read

count

too

low:

FAIL

NCAPH--C3

1.0

0.0

INCL_NON_REF_SPLICE

NCAPH^ENSG00000121152.10

chr2:96341894:+

C3^ENSG00000125730.17

chr19:6677803:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2331:20618:16736

NO_LDAS

0.0039

1.6049

1.8892

"[""INTERCHROMOSOMAL[chr2--chr19]""]"

chr2:96341894-chr19:6677803

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NBPF12--FAM166A

1.0

0.0

INCL_NON_REF_SPLICE

NBPF12^ENSG00000268043.7

chr1:146970719:+

FAM166A^ENSG00000188163.8

chr9:137244424:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2216:17576:28926

NO_LDAS

0.0039

1.7465

1.6402

"[""INTERCHROMOSOMAL[chr1--chr9]""]"

chr1:146970719-chr9:137244424

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NAV2--WARS1

1.0

0.0

ONLY_REF_SPLICE

NAV2^ENSG00000166833.22

chr11:19351027:+

WARS1^ENSG00000140105.18

chr14:100354566:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1235:21646:29445

YES_LDAS

0.0039

1.5329

1.8062

"[""INTERCHROMOSOMAL[chr11--chr14]""]"

chr11:19351027-chr14:100354566

False

Read

count

too

low:

FAIL

NAGK--FNDC3B

1.0

0.0

INCL_NON_REF_SPLICE

NAGK^ENSG00000124357.13

chr2:71072751:+

FNDC3B^ENSG00000075420.13

chr3:172343022:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2122:16557:14522

NO_LDAS

0.0039

1.7465

1.6895

"[""INTERCHROMOSOMAL[chr2--chr3]""]"

chr2:71072751-chr3:172343022

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

NAGA--ATP6V1E1

1.0

0.0

ONLY_REF_SPLICE

NAGA^ENSG00000198951.12

chr22:42062827:-

ATP6V1E1^ENSG00000131100.13

chr22:17619127:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1205:36847:15391

YES_LDAS

0.0039

1.9329

1.8892

"[""INTRACHROMOSOMAL[chr22:24.43Mb]""]"

chr22:42062827-chr22:17619127

False

Read

count

too

low:

FAIL

NAB1--CCDC71L

1.0

0.0

INCL_NON_REF_SPLICE

NAB1^ENSG00000138386.17

chr2:190659995:+

CCDC71L^ENSG00000253276.4

chr7:106660681:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1248:21306:16834

NO_LDAS

0.0039

1.9329

1.8323

"[""INTERCHROMOSOMAL[chr2--chr7]""]"

chr2:190659995-chr7:106660681

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MYO18A--TWSG1

0.33

0.0

INCL_NON_REF_SPLICE

MYO18A^ENSG00000196535.17

chr17:29107076:-

TWSG1^ENSG00000128791.12

chr18:9396334:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1120:51959:14073

NO_LDAS

0.0013

1.6895

1.8295

"[""INTERCHROMOSOMAL[chr17--chr18]""]"

chr17:29107076-chr18:9396334

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MYO18A--NICN1

0.33

0.0

INCL_NON_REF_SPLICE

MYO18A^ENSG00000196535.17

chr17:29107076:-

NICN1^ENSG00000145029.14

chr3:49425917:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1120:51959:14073

NO_LDAS

0.0013

1.6895

1.7968

"[""INTERCHROMOSOMAL[chr17--chr3]""]"

chr17:29107076-chr3:49425917

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MYH11--AC005329.1

0.33

0.0

INCL_NON_REF_SPLICE

MYH11^ENSG00000133392.18

chr16:15732574:-

AC005329.1^ENSG00000248015.7

chr19:1393098:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1233:2553:7137

NO_LDAS

0.0013

1.9086

1.5219

"[""INTERCHROMOSOMAL[chr16--chr19]""]"

chr16:15732574-chr19:1393098

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MYC--ATRX

1.0

0.0

INCL_NON_REF_SPLICE

MYC^ENSG00000136997.21

chr8:127739019:+

ATRX^ENSG00000085224.23

chrX:77652334:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2261:34387:8973

NO_LDAS

0.0039

1.8892

0.971

"[""INTERCHROMOSOMAL[chr8--chrX]""]"

chr8:127739019-chrX:77652334

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MSI1--AC011921.1

0.17

0.0

INCL_NON_REF_SPLICE

MSI1^ENSG00000135097.7

chr12:120369115:-

AC011921.1^ENSG00000259349.2

chr17:60550737:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2313:47234:9225

NO_LDAS

0.0007

1.3383

1.1589

"[""INTERCHROMOSOMAL[chr12--chr17]""]"

chr12:120369115-chr17:60550737

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MSANTD3--TMEFF1

1.0

0.0

ONLY_REF_SPLICE

MSANTD3^ENSG00000066697.15

chr9:100442356:+

TMEFF1^ENSG00000241697.5

chr9:100498765:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1312:7343:14228

YES_LDAS

0.0039

1.7465

1.5656

"[""INTRACHROMOSOMAL[chr9:0.02Mb]"",""NEIGHBORS[21415]""]"

chr9:100442356-chr9:100498765

True

pair|recurrent

breakpoints

Blacklisted

FAIL

MRPS11--SLC16A4

1.0

0.0

INCL_NON_REF_SPLICE

MRPS11^ENSG00000181991.16

chr15:88475243:+

SLC16A4^ENSG00000168679.18

chr1:110363737:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1478:30868:5120

NO_LDAS

0.0039

1.7819

1.2366

"[""INTERCHROMOSOMAL[chr15--chr1]""]"

chr15:88475243-chr1:110363737

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MRPL23--SLC9A3R2

1.0

0.0

INCL_NON_REF_SPLICE

MRPL23^ENSG00000214026.11

chr11:1956554:+

SLC9A3R2^ENSG00000065054.14

chr16:2032802:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1124:40010:21234

NO_LDAS

0.0039

1.7232

1.6402

"[""INTERCHROMOSOMAL[chr11--chr16]""]"

chr11:1956554-chr16:2032802

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

MROH1--TNS3

1.0

0.0

INCL_NON_REF_SPLICE

MROH1^ENSG00000179832.17

chr8:144242515:+

TNS3^ENSG00000136205.17

chr7:47278425:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1159:41628:5260

NO_LDAS

0.0039

1.8323

1.9656

"[""INTERCHROMOSOMAL[chr8--chr7]""]"

chr8:144242515-chr7:47278425

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MOB3A--AP3D1

1.0

0.0

ONLY_REF_SPLICE

MOB3A^ENSG00000172081.14

chr19:2096226:-

AP3D1^ENSG00000065000.19

chr19:2102268:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1286:25852:24513

YES_LDAS

0.0039

1.7465

1.9656

"[""DEEPEST2019"",""INTRACHROMOSOMAL[chr19:0.00Mb]"",""LOCAL_REARRANGEMENT:-:[4315]""]"

chr19:2096226-chr19:2102268

False

Read

count

too

low:

FAIL

MMP24OS--KRBA1

1.0

0.0

INCL_NON_REF_SPLICE

MMP24OS^ENSG00000126005.17

chr20:35277784:-

KRBA1^ENSG00000133619.17

chr7:149730240:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2204:23417:9085

YES_LDAS

0.0039

1.2419

"[""INTERCHROMOSOMAL[chr20--chr7]""]"

chr20:35277784-chr7:149730240

False

Read

count

too

low:

FAIL

MMP14--LRP2

1.0

0.0

INCL_NON_REF_SPLICE

MMP14^ENSG00000157227.14

chr14:22841639:+

LRP2^ENSG00000081479.15

chr2:169289107:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2304:34598:16371

NO_LDAS

0.0039

1.8892

1.9086

"[""INTERCHROMOSOMAL[chr14--chr2]""]"

chr14:22841639-chr2:169289107

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MIR552--WWP1

1.0

0.0

INCL_NON_REF_SPLICE

MIR552^ENSG00000207941.1

chr1:34669630:-

WWP1^ENSG00000123124.14

chr8:86438585:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1491:30132:23938

NO_LDAS

0.0039

1.9899

1.6895

"[""INTERCHROMOSOMAL[chr1--chr8]""]"

chr1:34669630-chr8:86438585

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MIR23AHG--RAB37

1.0

0.0

INCL_NON_REF_SPLICE

MIR23AHG^ENSG00000267519.6

chr19:13841862:-

RAB37^ENSG00000172794.20

chr17:74745271:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1333:17180:28464

NO_LDAS

0.0039

1.4566

1.371

"[""INTERCHROMOSOMAL[chr19--chr17]""]"

chr19:13841862-chr17:74745271

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MICALL1--LINC02018

1.0

0.0

ONLY_REF_SPLICE

MICALL1^ENSG00000100139.14

chr22:37922426:+

LINC02018^ENSG00000272690.6

chr3:75446468:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1138:15950:20954

NO_LDAS

0.0039

1.8892

1.9656

"[""INTERCHROMOSOMAL[chr22--chr3]""]"

chr22:37922426-chr3:75446468

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

MICALL1--AL354854.1

1.0

0.0

INCL_NON_REF_SPLICE

MICALL1^ENSG00000100139.14

chr22:37924717:+

AL354854.1^ENSG00000223421.1

chr9:31166843:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1204:7690:13009

NO_LDAS

0.0039

1.7465

1.8892

"[""INTERCHROMOSOMAL[chr22--chr9]""]"

chr22:37924717-chr9:31166843

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MIA3--LRRC8C-DT

1.0

0.0

INCL_NON_REF_SPLICE

MIA3^ENSG00000154305.18

chr1:222652332:+

LRRC8C-DT^ENSG00000231999.7

chr1:89620618:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1263:15335:23111

NO_LDAS

0.0039

1.1589

1.8892

"[""INTRACHROMOSOMAL[chr1:132.99Mb]""]"

chr1:222652332-chr1:89620618

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MGRN1--AC061975.6

0.33

0.0

INCL_NON_REF_SPLICE

MGRN1^ENSG00000102858.13

chr16:4688924:+

AC061975.6^ENSG00000266830.1

chr17:28247928:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2339:16242:9491

NO_LDAS

0.0013

1.8323

"[""INTERCHROMOSOMAL[chr16--chr17]""]"

chr16:4688924-chr17:28247928

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MEGF8--HCFC1

1.0

0.0

INCL_NON_REF_SPLICE

MEGF8^ENSG00000105429.13

chr19:42355856:+

HCFC1^ENSG00000172534.14

chrX:153956732:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2219:49775:11888

NO_LDAS

0.0039

1.5329

1.7232

"[""INTERCHROMOSOMAL[chr19--chrX]""]"

chr19:42355856-chrX:153956732

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MED18--SEC22B

0.25

0.0

INCL_NON_REF_SPLICE

MED18^ENSG00000130772.14

chr1:28330721:+

SEC22B^ENSG00000265808.4

chr1:120157151:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2113:49354:1126

NO_LDAS

0.001

1.8892

"[""INTRACHROMOSOMAL[chr1:91.81Mb]""]"

chr1:28330721-chr1:120157151

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MDGA2--RAB11FIP3

0.11

0.0

INCL_NON_REF_SPLICE

MDGA2^ENSG00000139915.21

chr14:47675016:-

RAB11FIP3^ENSG00000090565.17

chr16:425863:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1427:33222:2920

NO_LDAS

0.0004

0.9183

1.4295

"[""INTERCHROMOSOMAL[chr14--chr16]""]"

chr14:47675016-chr16:425863

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MCM5--ABHD2

0.5

0.0

INCL_NON_REF_SPLICE

MCM5^ENSG00000100297.16

chr22:35406563:+

ABHD2^ENSG00000140526.18

chr15:89198845:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1373:38376:3382

NO_LDAS

0.0019

1.9656

"[""INTERCHROMOSOMAL[chr22--chr15]""]"

chr22:35406563-chr15:89198845

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MCL1--WBP1

1.0

0.0

INCL_NON_REF_SPLICE

MCL1^ENSG00000143384.14

chr1:150574737:-

WBP1^ENSG00000239779.7

chr2:74460395:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2187:19316:17282

YES_LDAS

0.0039

1.9329

1.6895

"[""INTERCHROMOSOMAL[chr1--chr2]""]"

chr1:150574737-chr2:74460395

False

Read

count

too

low:

FAIL

MCFD2--ZNF761

1.0

0.0

ONLY_REF_SPLICE

MCFD2^ENSG00000180398.13

chr2:46910780:-

ZNF761^ENSG00000160336.16

chr19:53454650:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1175:16767:3760

YES_LDAS

0.0039

1.8892

1.5656

"[""INTERCHROMOSOMAL[chr2--chr19]""]"

chr2:46910780-chr19:53454650

False

Read

count

too

low:

FAIL

MCC--BSPRY

1.0

0.0

INCL_NON_REF_SPLICE

MCC^ENSG00000171444.18

chr5:113488579:-

BSPRY^ENSG00000119411.11

chr9:113370102:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1104:47663:11061

NO_LDAS

0.0039

1.7232

1.5656

"[""INTERCHROMOSOMAL[chr5--chr9]""]"

chr5:113488579-chr9:113370102

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MBTPS1--KRT8P6

1.0

0.0

INCL_NON_REF_SPLICE

MBTPS1^ENSG00000140943.17

chr16:84059302:-

KRT8P6^ENSG00000214930.2

chrX:138488689:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2368:10465:18347

NO_LDAS

0.0039

1.5219

1.8892

"[""INTERCHROMOSOMAL[chr16--chrX]""]"

chr16:84059302-chrX:138488689

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MAST2--LINC02043

1.0

0.0

INCL_NON_REF_SPLICE

MAST2^ENSG00000086015.22

chr1:45804072:+

LINC02043^ENSG00000232233.1

chr3:186812081:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2269:42542:18726

YES_LDAS

0.0039

1.3996

1.6729

"[""INTERCHROMOSOMAL[chr1--chr3]""]"

chr1:45804072-chr3:186812081

False

Read

count

too

low:

FAIL

MARCHF8--AC093525.10

0.5

0.0

INCL_NON_REF_SPLICE

MARCHF8^ENSG00000165406.16

chr10:45533110:-

AC093525.10^ENSG00000280402.1

chr16:2578960:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2182:12269:22845

NO_LDAS

0.0019

1.2867

1.8323

"[""INTERCHROMOSOMAL[chr10--chr16]""]"

chr10:45533110-chr16:2578960

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MAP3K1--AGO3

0.5

0.0

INCL_NON_REF_SPLICE

MAP3K1^ENSG00000095015.6

chr5:56859909:+

AGO3^ENSG00000126070.20

chr1:36061769:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2131:34849:13891

NO_LDAS

0.0019

1.8892

1.9656

"[""INTERCHROMOSOMAL[chr5--chr1]""]"

chr5:56859909-chr1:36061769

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

MAGI1--MECOM

1.0

0.0

ONLY_REF_SPLICE

MAGI1^ENSG00000151276.23

chr3:66037996:-

MECOM^ENSG00000085276.19

chr3:169143832:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1201:42874:23308

NO_LDAS

0.0039

1.8256

1.8323

"[""INTRACHROMOSOMAL[chr3:103.04Mb]""]"

chr3:66037996-chr3:169143832

False

Read

count

too

low:

FAIL

LYRM4--TRIO

1.0

0.0

ONLY_REF_SPLICE

LYRM4^ENSG00000214113.11

chr6:5260648:-

TRIO^ENSG00000038382.20

chr5:14381130:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2282:25950:19804

YES_LDAS

0.0039

1.9086

"[""INTERCHROMOSOMAL[chr6--chr5]""]"

chr6:5260648-chr5:14381130

False

Read

count

too

low:

FAIL

LUCAT1--PIGL

1.0

0.0

ONLY_REF_SPLICE

LUCAT1^ENSG00000248323.7

chr5:91313638:-

PIGL^ENSG00000108474.17

chr17:16299888:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2166:37623:2667

YES_LDAS

0.0039

1.3383

1.9899

"[""INTERCHROMOSOMAL[chr5--chr17]""]"

chr5:91313638-chr17:16299888

True

pair|recurrent

breakpoints

Blacklisted

FAIL

LTBP3--HMCN2

1.0

0.0

ONLY_REF_SPLICE

LTBP3^ENSG00000168056.17

chr11:65553164:-

HMCN2^ENSG00000148357.16

chr9:130432429:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1293:35763:10234

NO_LDAS

0.0039

1.7465

1.9329

"[""INTERCHROMOSOMAL[chr11--chr9]""]"

chr11:65553164-chr9:130432429

False

Read

count

too

low:

FAIL

LSR--AL080285.2

1.0

0.0

INCL_NON_REF_SPLICE

LSR^ENSG00000105699.17

chr19:35267685:+

AL080285.2^ENSG00000275716.1

chr6:100093502:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1484:44160:4321

NO_LDAS

0.0039

0.8366

1.9329

"[""INTERCHROMOSOMAL[chr19--chr6]""]"

chr19:35267685-chr6:100093502

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

LRP1--C7

1.0

0.0

INCL_NON_REF_SPLICE

LRP1^ENSG00000123384.14

chr12:57176063:+

C7^ENSG00000112936.19

chr5:40983994:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1315:48407:26054

YES_LDAS

0.0039

1.9656

"[""INTERCHROMOSOMAL[chr12--chr5]""]"

chr12:57176063-chr5:40983994

False

Read

count

too

low:

FAIL

LNCOG--COA1

1.0

0.0

ONLY_REF_SPLICE

LNCOG^ENSG00000257219.6

chr12:76302879:+

COA1^ENSG00000106603.19

chr7:43650712:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1143:20133:19903

YES_LDAS

0.0039

1.9899

"[""INTERCHROMOSOMAL[chr12--chr7]""]"

chr12:76302879-chr7:43650712

False

Read

count

too

low:

FAIL

LINC02802--AC245060.4

0.33

0.0

ONLY_REF_SPLICE

LINC02802^ENSG00000232527.8

chr1:144250225:-

AC245060.4^ENSG00000272779.1

chr22:22303224:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2160:6712:23027

YES_LDAS

0.0013

1.9329

1.9219

"[""INTERCHROMOSOMAL[chr1--chr22]""]"

chr1:144250225-chr22:22303224

False

Read

count

too

low:

FAIL

LINC02699--FURIN

1.0

0.0

INCL_NON_REF_SPLICE

LINC02699^ENSG00000254456.6

chr11:25774309:+

FURIN^ENSG00000140564.13

chr15:90880094:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1495:12140:10682

NO_LDAS

0.0039

1.6895

1.7819

"[""INTERCHROMOSOMAL[chr11--chr15]""]"

chr11:25774309-chr15:90880094

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

LINC01659--AP000344.1

1.0

0.0

ONLY_REF_SPLICE

LINC01659^ENSG00000234928.1

chr22:23434061:+

AP000344.1^ENSG00000227755.1

chr22:23460353:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2179:39759:25283

YES_LDAS

0.0039

1.4566

1.6402

"[""INTRACHROMOSOMAL[chr22:0.01Mb]"",""NEIGHBORS[11527]""]"

chr22:23434061-chr22:23460353

True

pair|immunoglobulins;

pair|recurrent

breakpoints;

pair|immunoglobulins

Blacklisted

FAIL

LINC01499--SCAPER

1.0

0.0

ONLY_REF_SPLICE

LINC01499^ENSG00000255171.7

chr11:41718427:+

SCAPER^ENSG00000140386.13

chr15:76841931:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2273:42332:16904

NO_LDAS

0.0039

1.9329

1.9656

"[""INTERCHROMOSOMAL[chr11--chr15]""]"

chr11:41718427-chr15:76841931

False

Read

count

too

low:

FAIL

LINC00461--FBXO31

1.0

0.0

INCL_NON_REF_SPLICE

LINC00461^ENSG00000245526.11

chr5:88670958:-

FBXO31^ENSG00000103264.18

chr16:87336264:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2398:46644:22271

NO_LDAS

0.0039

1.8295

1.7968

"[""INTERCHROMOSOMAL[chr5--chr16]""]"

chr5:88670958-chr16:87336264

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

LIMD1--RNGTT

1.0

0.0

ONLY_REF_SPLICE

LIMD1^ENSG00000144791.10

chr3:45596287:+

RNGTT^ENSG00000111880.16

chr6:88941180:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1192:30302:25213

NO_LDAS

0.0039

1.8892

1.9329

"[""INTERCHROMOSOMAL[chr3--chr6]""]"

chr3:45596287-chr6:88941180

False

Read

count

too

low:

FAIL

LIMD1--HDAC8

1.0

0.0

INCL_NON_REF_SPLICE

LIMD1^ENSG00000144791.10

chr3:45681025:+

HDAC8^ENSG00000147099.21

chrX:72422287:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2329:45705:10332

NO_LDAS

0.0039

0.0

1.3753

"[""INTERCHROMOSOMAL[chr3--chrX]""]"

chr3:45681025-chrX:72422287

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

LGSN--UBR4

1.0

0.0

INCL_NON_REF_SPLICE

LGSN^ENSG00000146166.17

chr6:63277949:-

UBR4^ENSG00000127481.15

chr1:19169532:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1385:11007:3116

NO_LDAS

0.0039

1.9656

1.9329

"[""INTERCHROMOSOMAL[chr6--chr1]""]"

chr6:63277949-chr1:19169532

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

LGMN--TRAK1

1.0

0.0

ONLY_REF_SPLICE

LGMN^ENSG00000100600.15

chr14:92741062:-

TRAK1^ENSG00000182606.17

chr3:42188045:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1492:39646:28562

YES_LDAS

0.0039

1.9329

1.8256

"[""INTERCHROMOSOMAL[chr14--chr3]""]"

chr14:92741062-chr3:42188045

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

LGMN--RIN3

1.0

0.0

ONLY_REF_SPLICE

LGMN^ENSG00000100600.15

chr14:92748489:-

RIN3^ENSG00000100599.16

chr14:92555751:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1230:27139:22733

YES_LDAS

0.0039

1.8323

1.8062

"[""INTRACHROMOSOMAL[chr14:0.01Mb]"",""LOCAL_INVERSION:-:+:[14813]""]"

chr14:92748489-chr14:92555751

False

Read

count

too

low:

FAIL

LGI2--ITGA6

1.0

0.0

INCL_NON_REF_SPLICE

LGI2^ENSG00000153012.12

chr4:25030696:-

ITGA6^ENSG00000091409.15

chr2:172427707:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2335:13612:9758

NO_LDAS

0.0039

1.2419

1.5219

"[""INTERCHROMOSOMAL[chr4--chr2]""]"

chr4:25030696-chr2:172427707

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

LENG8--TMEM198B

1.0

0.0

ONLY_REF_SPLICE

LENG8^ENSG00000167615.17

chr19:54458521:+

TMEM198B^ENSG00000182796.14

chr12:55832871:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1274:19114:2695

YES_LDAS

0.0039

1.8892

1.8323

"[""INTERCHROMOSOMAL[chr19--chr12]""]"

chr19:54458521-chr12:55832871

False

Read

count

too

low:

FAIL

LENG8--KHSRP

1.0

0.0

INCL_NON_REF_SPLICE

LENG8^ENSG00000167615.17

chr19:54456777:+

KHSRP^ENSG00000088247.18

chr19:6415734:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1148:35747:28142

NO_LDAS

0.0039

1.6402

1.8256

"[""INTRACHROMOSOMAL[chr19:48.02Mb]""]"

chr19:54456777-chr19:6415734

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KRT7--MFSD4B

1.0

0.0

INCL_NON_REF_SPLICE

KRT7^ENSG00000135480.16

chr12:52248211:+

MFSD4B^ENSG00000173214.7

chr6:111274776:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1142:43634:2457

NO_LDAS

0.0039

1.9899

1.8892

"[""INTERCHROMOSOMAL[chr12--chr6]""]"

chr12:52248211-chr6:111274776

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KRT10--KRT19

1.0

0.0

ONLY_REF_SPLICE

KRT10^ENSG00000186395.9

chr17:40820511:-

KRT19^ENSG00000171345.13

chr17:41524540:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1105:52072:2527

YES_LDAS

0.0039

1.5058

1.9656

"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr17:0.70Mb]""]"

chr17:40820511-chr17:41524540

False

Excluded

annotation

pattern:

DGD_PARALOGS

FAIL

KLF6--ZSCAN4

0.33

0.0

INCL_NON_REF_SPLICE

KLF6^ENSG00000067082.15

chr10:3781641:-

ZSCAN4^ENSG00000180532.10

chr19:57678778:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1189:14122:19580

NO_LDAS

0.0013

1.585

1.8295

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr10--chr19]""]"

chr10:3781641-chr19:57678778

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

KHDRBS1--TRAPPC9

1.0

0.0

ONLY_REF_SPLICE

KHDRBS1^ENSG00000121774.18

chr1:32014377:+

TRAPPC9^ENSG00000167632.18

chr8:140405698:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2456:33142:7235

YES_LDAS

0.0039

1.8892

1.7232

"[""INTERCHROMOSOMAL[chr1--chr8]""]"

chr1:32014377-chr8:140405698

False

Read

count

too

low:

FAIL

KHDC4--ATP1A1

1.0

0.0

ONLY_REF_SPLICE

KHDC4^ENSG00000132680.11

chr1:155915873:-

ATP1A1^ENSG00000163399.16

chr1:116388638:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1119:5207:4559

YES_LDAS

0.0039

1.9086

1.9656

"[""INTRACHROMOSOMAL[chr1:39.50Mb]""]"

chr1:155915873-chr1:116388638

False

Read

count

too

low:

FAIL

KF456478.1--UBALD2

1.0

0.0

INCL_NON_REF_SPLICE

KF456478.1^ENSG00000267688.1

chr19:3122079:-

UBALD2^ENSG00000185262.9

chr17:76270447:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2327:48448:14942

NO_LDAS

0.0039

1.6895

1.4566

"[""INTERCHROMOSOMAL[chr19--chr17]""]"

chr19:3122079-chr17:76270447

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KDM4A--IGSF1

1.0

0.0

INCL_NON_REF_SPLICE

KDM4A^ENSG00000066135.13

chr1:43668019:+

IGSF1^ENSG00000147255.19

chrX:131281917:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2365:42097:15096

NO_LDAS

0.0039

1.7465

1.9656

"[""INTERCHROMOSOMAL[chr1--chrX]""]"

chr1:43668019-chrX:131281917

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KCNT1--GOLGA8A

0.5

0.0

INCL_NON_REF_SPLICE

KCNT1^ENSG00000107147.14

chr9:135792225:+

GOLGA8A^ENSG00000175265.17

chr15:34382526:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1363:36798:29543

NO_LDAS

0.0019

1.7232

1.5301

"[""INTERCHROMOSOMAL[chr9--chr15]""]"

chr9:135792225-chr15:34382526

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KCNN4--KDM3B

1.0

0.0

INCL_NON_REF_SPLICE

KCNN4^ENSG00000104783.14

chr19:43781182:-

KDM3B^ENSG00000120733.14

chr5:138425415:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2216:11922:7698

NO_LDAS

0.0039

1.9086

1.3996

"[""INTERCHROMOSOMAL[chr19--chr5]""]"

chr19:43781182-chr5:138425415

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KCNMB2-AS1--ZMAT3

1.0

0.0

ONLY_REF_SPLICE

KCNMB2-AS1^ENSG00000237978.6

chr3:178801793:-

ZMAT3^ENSG00000172667.11

chr3:179004184:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1342:24607:26923

YES_LDAS

0.0039

1.9656

1.9219

"[""INTRACHROMOSOMAL[chr3:0.02Mb]"",""LOCAL_REARRANGEMENT:-:[22769]""]"

chr3:178801793-chr3:179004184

False

Read

count

too

low:

FAIL

KCNJ6--SPRED2

0.12

0.0

INCL_NON_REF_SPLICE

KCNJ6^ENSG00000157542.11

chr21:37610018:-

SPRED2^ENSG00000198369.10

chr2:65432243:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1274:36992:9702

NO_LDAS

0.0005

1.6402

1.4716

"[""INTERCHROMOSOMAL[chr21--chr2]""]"

chr21:37610018-chr2:65432243

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KCNJ6--IL10RA

0.12

0.0

INCL_NON_REF_SPLICE

KCNJ6^ENSG00000157542.11

chr21:37610018:-

IL10RA^ENSG00000110324.11

chr11:117995274:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1274:36992:9702

NO_LDAS

0.0005

1.6402

"[""INTERCHROMOSOMAL[chr21--chr11]""]"

chr21:37610018-chr11:117995274

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KCNJ11--NELFB

1.0

0.0

INCL_NON_REF_SPLICE

KCNJ11^ENSG00000187486.6

chr11:17387405:-

NELFB^ENSG00000188986.9

chr9:137263037:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1260:45956:1743

NO_LDAS

0.0039

1.5058

1.6729

"[""INTERCHROMOSOMAL[chr11--chr9]""]"

chr11:17387405-chr9:137263037

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

KAT2B--KAT2A

1.0

0.0

ONLY_REF_SPLICE

KAT2B^ENSG00000114166.8

chr3:20099954:+

KAT2A^ENSG00000108773.11

chr17:42119718:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1149:48076:2443

YES_LDAS

0.0039

1.9656

1.8323

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr3--chr17]""]"

chr3:20099954-chr17:42119718

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

KAT2B--KAT2A

1.0

0.0

ONLY_REF_SPLICE

KAT2B^ENSG00000114166.8

chr3:20072459:+

KAT2A^ENSG00000108773.11

chr17:42120370:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1497:3063:5302

YES_LDAS

0.0039

1.9656

1.8295

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr3--chr17]""]"

chr3:20072459-chr17:42120370

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

JMJD1C--KDM3A

1.0

0.0

ONLY_REF_SPLICE

JMJD1C^ENSG00000171988.19

chr10:63521738:-

KDM3A^ENSG00000115548.17

chr2:86449807:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2235:33344:16778

NO_LDAS

0.0039

1.8062

1.4295

"[""INTERCHROMOSOMAL[chr10--chr2]""]"

chr10:63521738-chr2:86449807

False

Read

count

too

low:

FAIL

JAZF1--CBX6

0.5

0.0

INCL_NON_REF_SPLICE

JAZF1^ENSG00000153814.13

chr7:27831453:-

CBX6^ENSG00000183741.12

chr22:38871757:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1113:51263:1575

NO_LDAS

0.0019

1.6895

1.9656

"[""INTERCHROMOSOMAL[chr7--chr22]""]"

chr7:27831453-chr22:38871757

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

JAG2--WDR1

1.0

0.0

INCL_NON_REF_SPLICE

JAG2^ENSG00000184916.9

chr14:105151956:-

WDR1^ENSG00000071127.17

chr4:10077445:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2391:16614:11705

NO_LDAS

0.0039

1.9086

1.5329

"[""INTERCHROMOSOMAL[chr14--chr4]""]"

chr14:105151956-chr4:10077445

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ITSN2--DOCK1

1.0

0.0

ONLY_REF_SPLICE

ITSN2^ENSG00000198399.15

chr2:24360304:-

DOCK1^ENSG00000150760.13

chr10:126970702:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2246:27956:23756

YES_LDAS

0.0039

1.3996

1.6402

"[""INTERCHROMOSOMAL[chr2--chr10]""]"

chr2:24360304-chr10:126970702

False

Read

count

too

low:

FAIL

ITPR2--TMEM44-AS1

1.0

0.0

ONLY_REF_SPLICE

ITPR2^ENSG00000123104.12

chr12:26832690:-

TMEM44-AS1^ENSG00000231770.6

chr3:194589021:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2296:41062:5260

NO_LDAS

0.0039

1.9656

1.8892

"[""INTERCHROMOSOMAL[chr12--chr3]""]"

chr12:26832690-chr3:194589021

False

Read

count

too

low:

FAIL

ITPR2--ITPR3

1.0

0.0

ONLY_REF_SPLICE

ITPR2^ENSG00000123104.12

chr12:26657707:-

ITPR3^ENSG00000096433.11

chr6:33670325:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1365:44209:27581

NO_LDAS

0.0039

1.8062

1.9899

"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr12--chr6]""]"

chr12:26657707-chr6:33670325

False

Excluded

annotation

pattern:

HGNC_GENEFAM

FAIL

ITGA9--GOLGA4

1.0

0.0

ONLY_REF_SPLICE

ITGA9^ENSG00000144668.12

chr3:37542585:+

GOLGA4^ENSG00000144674.16

chr3:37335053:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2188:7569:6325

YES_LDAS

0.0039

1.9219

1.8323

"[""DEEPEST2019"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr3:0.09Mb]"",""LOCAL_REARRANGEMENT:+:[85364]""]"

chr3:37542585-chr3:37335053

False

Read

count

too

low:

FAIL

ITGA7--DTNB

1.0

0.0

INCL_NON_REF_SPLICE

ITGA7^ENSG00000135424.18

chr12:55707878:-

DTNB^ENSG00000138101.19

chr2:25427631:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1339:30828:25564

NO_LDAS

0.0039

1.8062

1.5628

"[""INTERCHROMOSOMAL[chr12--chr2]""]"

chr12:55707878-chr2:25427631

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

IRX2--AC005104.1

1.0

0.0

INCL_NON_REF_SPLICE

IRX2^ENSG00000170561.13

chr5:2746746:-

AC005104.1^ENSG00000223374.1

chr2:241351562:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2164:47089:9814

NO_LDAS

0.0039

0.0

1.9329

"[""INTERCHROMOSOMAL[chr5--chr2]""]"

chr5:2746746-chr2:241351562

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

IRAK1--NKAIN3

1.0

0.0

INCL_NON_REF_SPLICE

IRAK1^ENSG00000184216.14

chrX:154019232:-

NKAIN3^ENSG00000185942.13

chr8:62982820:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1396:16751:3284

NO_LDAS

0.0039

1.7819

"[""INTERCHROMOSOMAL[chrX--chr8]""]"

chrX:154019232-chr8:62982820

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

IQGAP1--ZNF774

1.0

0.0

ONLY_REF_SPLICE

IQGAP1^ENSG00000140575.13

chr15:90390873:+

ZNF774^ENSG00000196391.11

chr15:90354642:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1136:2311:18992

YES_LDAS

0.0039

1.2867

1.9899

"[""TumorFusionsNAR2018"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""INTRACHROMOSOMAL[chr15:0.02Mb]"",""LOCAL_REARRANGEMENT:+:[19096]""]"

chr15:90390873-chr15:90354642

False

Read

count

too

low:

FAIL

ILK--ADGRE2

1.0

0.0

INCL_NON_REF_SPLICE

ILK^ENSG00000166333.14

chr11:6610035:+

ADGRE2^ENSG00000127507.18

chr19:14766987:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1259:35350:24765

NO_LDAS

0.0039

1.7819

1.9899

"[""INTERCHROMOSOMAL[chr11--chr19]""]"

chr11:6610035-chr19:14766987

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

IL20RA--G2E3

1.0

0.0

INCL_NON_REF_SPLICE

IL20RA^ENSG00000016402.13

chr6:137008599:-

G2E3^ENSG00000092140.16

chr14:30618275:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1186:40325:26348

NO_LDAS

0.0039

1.9656

1.6402

"[""INTERCHROMOSOMAL[chr6--chr14]""]"

chr6:137008599-chr14:30618275

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

IL17REL--AMY1B

1.0

0.0

INCL_NON_REF_SPLICE

IL17REL^ENSG00000188263.10

chr22:49996379:-

AMY1B^ENSG00000174876.16

chr1:103693382:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1123:35585:20015

NO_LDAS

0.0039

1.8892

1.7968

"[""INTERCHROMOSOMAL[chr22--chr1]""]"

chr22:49996379-chr1:103693382

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

IL17D--PRSS23

1.0

0.0

INCL_NON_REF_SPLICE

IL17D^ENSG00000172458.4

chr13:20721729:+

PRSS23^ENSG00000150687.12

chr11:86807636:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1334:8451:14662

NO_LDAS

0.0039

1.8295

1.8892

"[""INTERCHROMOSOMAL[chr13--chr11]""]"

chr13:20721729-chr11:86807636

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

IL10RB--CHD2

1.0

0.0

ONLY_REF_SPLICE

IL10RB^ENSG00000243646.10

chr21:33288261:+

CHD2^ENSG00000173575.22

chr15:93020012:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1169:48205:27105

NO_LDAS

0.0039

1.8062

1.8892

"[""INTERCHROMOSOMAL[chr21--chr15]""]"

chr21:33288261-chr15:93020012

False

Read

count

too

low:

FAIL

IFT140--PRKACG

0.5

0.0

INCL_NON_REF_SPLICE

IFT140^ENSG00000187535.14

chr16:1526619:-

PRKACG^ENSG00000165059.8

chr9:69014071:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1477:48877:29669

NO_LDAS

0.0019

1.8892

1.5656

"[""INTERCHROMOSOMAL[chr16--chr9]""]"

chr16:1526619-chr9:69014071

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

IER3IP1--DTNB

1.0

0.0

ONLY_REF_SPLICE

IER3IP1^ENSG00000134049.6

chr18:47176187:-

DTNB^ENSG00000138101.19

chr2:25596240:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1438:22228:16974

YES_LDAS

0.0039

1.8892

"[""INTERCHROMOSOMAL[chr18--chr2]""]"

chr18:47176187-chr2:25596240

False

Read

count

too

low:

FAIL

HTR1A--SETD1A

1.0

0.0

INCL_NON_REF_SPLICE

HTR1A^ENSG00000178394.5

chr5:63959659:-

SETD1A^ENSG00000099381.18

chr16:30966884:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2121:31071:11299

NO_LDAS

0.0039

1.231

1.8892

"[""INTERCHROMOSOMAL[chr5--chr16]""]"

chr5:63959659-chr16:30966884

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

HSP90B1--FHAD1

1.0

0.0

INCL_NON_REF_SPLICE

HSP90B1^ENSG00000166598.16

chr12:103931583:+

FHAD1^ENSG00000142621.19

chr1:15382158:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1102:12318:10767

NO_LDAS

0.0039

1.7819

1.6895

"[""INTERCHROMOSOMAL[chr12--chr1]""]"

chr12:103931583-chr1:15382158

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

HSF4--PPAN

1.0

0.0

INCL_NON_REF_SPLICE

HSF4^ENSG00000102878.17

chr16:67167840:+

PPAN^ENSG00000130810.20

chr19:10110502:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2381:32041:7628

NO_LDAS

0.0039

1.4256

1.9086

"[""INTERCHROMOSOMAL[chr16--chr19]""]"

chr16:67167840-chr19:10110502

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

HSF1--RFWD3

1.0

0.0

INCL_NON_REF_SPLICE

HSF1^ENSG00000185122.11

chr8:144291874:+

RFWD3^ENSG00000168411.14

chr16:74664579:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2407:10473:5442

YES_LDAS

0.0039

1.9086

1.8892

"[""INTERCHROMOSOMAL[chr8--chr16]""]"

chr8:144291874-chr16:74664579

False

Read

count

too

low:

FAIL

HSDL1--CTNNA1

0.5

0.0

ONLY_REF_SPLICE

HSDL1^ENSG00000103160.12

chr16:84145080:-

CTNNA1^ENSG00000044115.21

chr5:138904349:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1465:10182:1126

NO_LDAS

0.0019

1.8256

1.9329

"[""INTERCHROMOSOMAL[chr16--chr5]""]"

chr16:84145080-chr5:138904349

False

Read

count

too

low:

FAIL

HOXA10--TMEM63A

0.33

0.0

INCL_NON_REF_SPLICE

HOXA10^ENSG00000253293.5

chr7:27174141:-

TMEM63A^ENSG00000196187.12

chr1:225862028:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1366:20901:4195

NO_LDAS

0.0013

1.1589

1.053

"[""INTERCHROMOSOMAL[chr7--chr1]""]"

chr7:27174141-chr1:225862028

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

HNRNPC--CFL1

1.0

0.0

INCL_NON_REF_SPLICE

HNRNPC^ENSG00000092199.18

chr14:21230319:-

CFL1^ENSG00000172757.13

chr11:65826496:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1184:41636:27077

NO_LDAS

0.0039

1.8256

1.6402

"[""INTERCHROMOSOMAL[chr14--chr11]""]"

chr14:21230319-chr11:65826496

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

HMGA2--ABCC5

1.0

0.0

INCL_NON_REF_SPLICE

HMGA2^ENSG00000149948.14

chr12:65824769:+

ABCC5^ENSG00000114770.17

chr3:183920257:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2392:23409:11005

NO_LDAS

0.0039

0.9968

"[""INTERCHROMOSOMAL[chr12--chr3]""]"

chr12:65824769-chr3:183920257

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

HMGA1--RUNDC3B

0.5

0.0

INCL_NON_REF_SPLICE

HMGA1^ENSG00000137309.20

chr6:34243522:+

RUNDC3B^ENSG00000105784.15

chr7:87777912:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1108:27236:16091

NO_LDAS

0.0019

1.8295

1.5546

"[""INTERCHROMOSOMAL[chr6--chr7]""]"

chr6:34243522-chr7:87777912

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

HLA-A--RUFY1

1.0

0.0

INCL_NON_REF_SPLICE

HLA-A^ENSG00000206503.13

chr6:29945281:+

RUFY1^ENSG00000176783.15

chr5:179609464:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1114:3217:10248

NO_LDAS

0.0039

1.9656

1.9086

"[""INTERCHROMOSOMAL[chr6--chr5]""]"

chr6:29945281-chr5:179609464

True

pair|recurrent

breakpoints

Blacklisted

FAIL

HLA-A--C12orf40

0.5

0.0

INCL_NON_REF_SPLICE

HLA-A^ENSG00000206503.13

chr6:29942951:+

C12orf40^ENSG00000180116.15

chr12:39716794:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1171:12464:6030

NO_LDAS

0.0019

1.5656

1.7056

"[""INTERCHROMOSOMAL[chr6--chr12]""]"

chr6:29942951-chr12:39716794

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

HDAC7--MMP24OS

1.0

0.0

INCL_NON_REF_SPLICE

HDAC7^ENSG00000061273.18

chr12:47798108:-

MMP24OS^ENSG00000126005.17

chr20:35277806:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1253:38966:15615

NO_LDAS

0.0039

1.9219

1.1033

"[""INTERCHROMOSOMAL[chr12--chr20]""]"

chr12:47798108-chr20:35277806

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

HBEGF--ADPRHL1

1.0

0.0

INCL_NON_REF_SPLICE

HBEGF^ENSG00000113070.8

chr5:140333477:-

ADPRHL1^ENSG00000153531.13

chr13:113403058:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1473:36709:12630

NO_LDAS

0.0039

1.9329

1.5546

"[""INTERCHROMOSOMAL[chr5--chr13]""]"

chr5:140333477-chr13:113403058

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

H1-0--KCTD7

1.0

0.0

INCL_NON_REF_SPLICE

H1-0^ENSG00000189060.5

chr22:37806409:+

KCTD7^ENSG00000243335.10

chr7:66638511:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2347:1752:18641

NO_LDAS

0.0039

1.2419

1.5656

"[""INTERCHROMOSOMAL[chr22--chr7]""]"

chr22:37806409-chr7:66638511

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GTF2I--ANKRD13D

0.33

0.0

INCL_NON_REF_SPLICE

GTF2I^ENSG00000263001.7

chr7:74758008:+

ANKRD13D^ENSG00000172932.16

chr11:67302471:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1435:8710:25367

NO_LDAS

0.0013

1.5329

1.9329

"[""INTERCHROMOSOMAL[chr7--chr11]""]"

chr7:74758008-chr11:67302471

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GSTK1--TRAPPC4

1.0

0.0

INCL_NON_REF_SPLICE

GSTK1^ENSG00000197448.14

chr7:143265296:+

TRAPPC4^ENSG00000196655.12

chr11:119023361:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2246:25157:12518

NO_LDAS

0.0039

1.9086

1.7968

"[""INTERCHROMOSOMAL[chr7--chr11]""]"

chr7:143265296-chr11:119023361

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GRSF1--ZACN

1.0

0.0

INCL_NON_REF_SPLICE

GRSF1^ENSG00000132463.14

chr4:70839517:-

ZACN^ENSG00000186919.13

chr17:76080912:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2379:1534:29025

NO_LDAS

0.0039

1.7465

1.231

"[""INTERCHROMOSOMAL[chr4--chr17]""]"

chr4:70839517-chr17:76080912

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GRHL1--TMEM179B

1.0

0.0

INCL_NON_REF_SPLICE

GRHL1^ENSG00000134317.18

chr2:9990747:+

TMEM179B^ENSG00000185475.11

chr11:62790255:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2148:17868:24779

NO_LDAS

0.0039

1.053

1.4566

"[""INTERCHROMOSOMAL[chr2--chr11]""]"

chr2:9990747-chr11:62790255

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GPR146--ADIRF

1.0

0.0

ONLY_REF_SPLICE

GPR146^ENSG00000164849.10

chr7:1044658:+

ADIRF^ENSG00000148671.14

chr10:86970200:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2445:9834:11733

NO_LDAS

0.0039

1.4566

1.7968

"[""INTERCHROMOSOMAL[chr7--chr10]""]"

chr7:1044658-chr10:86970200

False

Read

count

too

low:

FAIL

GOLPH3--PITPNM1

1.0

0.0

INCL_NON_REF_SPLICE

GOLPH3^ENSG00000113384.14

chr5:32174083:-

PITPNM1^ENSG00000110697.13

chr11:67504218:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1453:6283:23882

NO_LDAS

0.0039

1.4566

1.3996

"[""INTERCHROMOSOMAL[chr5--chr11]""]"

chr5:32174083-chr11:67504218

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GOLPH3--AC113385.3

0.07

0.0

ONLY_REF_SPLICE

GOLPH3^ENSG00000113384.14

chr5:32143749:-

AC113385.3^ENSG00000275374.1

chr5:100381398:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1351:1639:9758

YES_LDAS

0.0003

1.7232

1.9656

"[""INTRACHROMOSOMAL[chr5:68.20Mb]""]"

chr5:32143749-chr5:100381398

False

Read

count

too

low:

FAIL

GOLM2--NEK6

1.0

0.0

INCL_NON_REF_SPLICE

GOLM2^ENSG00000166734.20

chr15:44289185:+

NEK6^ENSG00000119408.17

chr9:124258044:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2121:16266:25031

YES_LDAS

0.0039

1.7465

1.5546

"[""INTERCHROMOSOMAL[chr15--chr9]""]"

chr15:44289185-chr9:124258044

False

Read

count

too

low:

FAIL

GOLGA8A--MTPAP

0.5

0.0

ONLY_REF_SPLICE

GOLGA8A^ENSG00000175265.17

chr15:34383746:-

MTPAP^ENSG00000107951.15

chr10:30369133:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2204:33101:16133

NO_LDAS

0.0019

1.8323

1.9329

"[""INTERCHROMOSOMAL[chr15--chr10]""]"

chr15:34383746-chr10:30369133

False

Read

count

too

low:

FAIL

GOLGA8A--CCDC134

0.5

0.0

INCL_NON_REF_SPLICE

GOLGA8A^ENSG00000175265.17

chr15:34381968:-

CCDC134^ENSG00000100147.14

chr22:41809896:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2280:43206:13233

NO_LDAS

0.0019

0.9968

1.5546

"[""INTERCHROMOSOMAL[chr15--chr22]""]"

chr15:34381968-chr22:41809896

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GLUL--LHFPL5

1.0

0.0

INCL_NON_REF_SPLICE

GLUL^ENSG00000135821.19

chr1:182392097:-

LHFPL5^ENSG00000197753.11

chr6:35814635:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2273:48642:29095

NO_LDAS

0.0039

1.6402

1.8892

"[""INTERCHROMOSOMAL[chr1--chr6]""]"

chr1:182392097-chr6:35814635

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GHR--ITGA1

1.0

0.0

ONLY_REF_SPLICE

GHR^ENSG00000112964.14

chr5:42629103:+

ITGA1^ENSG00000213949.10

chr5:52881873:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1159:33975:15377

YES_LDAS

0.0039

1.7465

1.8256

"[""INTRACHROMOSOMAL[chr5:10.07Mb]""]"

chr5:42629103-chr5:52881873

False

Read

count

too

low:

FAIL

GDF2--EIF4G1

1.0

0.0

INCL_NON_REF_SPLICE

GDF2^ENSG00000263761.3

chr10:47323014:+

EIF4G1^ENSG00000114867.22

chr3:184327279:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2143:34768:29053

NO_LDAS

0.0039

1.9656

1.4716

"[""INTERCHROMOSOMAL[chr10--chr3]""]"

chr10:47323014-chr3:184327279

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GCSH--C16orf46

1.0

0.0

ONLY_REF_SPLICE

GCSH^ENSG00000140905.11

chr16:81096131:-

C16orf46^ENSG00000166455.14

chr16:81062138:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2419:52105:25115

YES_LDAS

0.0039

1.5301

1.7232

"[""INTRACHROMOSOMAL[chr16:0.00Mb]"",""NEIGHBORS[4678]""]"

chr16:81096131-chr16:81062138

True

pair|recurrent

breakpoints

Blacklisted

FAIL

GBA--SLC25A19

0.5

0.0

INCL_NON_REF_SPLICE

GBA^ENSG00000177628.16

chr1:155234692:-

SLC25A19^ENSG00000125454.12

chr17:75277483:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1240:35124:20141

NO_LDAS

0.0019

1.9656

1.5628

"[""INTERCHROMOSOMAL[chr1--chr17]""]"

chr1:155234692-chr17:75277483

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GATD3B--CLIP1

0.33

0.0

INCL_NON_REF_SPLICE

GATD3B^ENSG00000280071.4

chr21:5122149:-

CLIP1^ENSG00000130779.22

chr12:122319348:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1409:20918:9772

NO_LDAS

0.0013

1.3996

1.9329

"[""INTERCHROMOSOMAL[chr21--chr12]""]"

chr21:5122149-chr12:122319348

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

GALT--IL11RA

1.0

0.0

INCL_NON_REF_SPLICE

GALT^ENSG00000213930.12

chr9:34649564:+

IL11RA^ENSG00000137070.18

chr9:34651884:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1228:46401:3438

YES_LDAS

0.0039

1.8295

1.9329

"[""DGD_PARALOGS"",""ConjoinG"",""Babiceanu_Normal"",""INTRACHROMOSOMAL[chr9:0.00Mb]"",""NEIGHBORS_OVERLAP:+:+:[333]""]"

chr9:34649564-chr9:34651884

False

Excluded

annotation

pattern:

DGD_PARALOGS

FAIL

FZD4--RPL18A

1.0

0.0

ONLY_REF_SPLICE

FZD4^ENSG00000174804.4

chr11:86954801:-

RPL18A^ENSG00000105640.13

chr19:17861293:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1121:3039:28436

YES_LDAS

0.0039

1.8892

"[""INTERCHROMOSOMAL[chr11--chr19]""]"

chr11:86954801-chr19:17861293

False

Read

count

too

low:

FAIL

FURIN--SFI1

1.0

0.0

INCL_NON_REF_SPLICE

FURIN^ENSG00000140564.13

chr15:90876359:+

SFI1^ENSG00000198089.16

chr22:31573070:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1369:33983:20911

NO_LDAS

0.0039

1.9656

1.8892

"[""INTERCHROMOSOMAL[chr15--chr22]""]"

chr15:90876359-chr22:31573070

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FSTL1--HNRNPH1

1.0

0.0

INCL_NON_REF_SPLICE

FSTL1^ENSG00000163430.12

chr3:120399883:-

HNRNPH1^ENSG00000169045.17

chr5:179619318:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1203:48068:2429

NO_LDAS

0.0039

1.8323

1.6402

"[""INTERCHROMOSOMAL[chr3--chr5]""]"

chr3:120399883-chr5:179619318

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FRMPD3--MAML3

1.0

0.0

INCL_NON_REF_SPLICE

FRMPD3^ENSG00000147234.10

chrX:107603268:+

MAML3^ENSG00000196782.12

chr4:139889986:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2206:41345:2331

YES_LDAS

0.0039

1.585

1.4566

"[""INTERCHROMOSOMAL[chrX--chr4]""]"

chrX:107603268-chr4:139889986

False

Read

count

too

low:

FAIL

FRMD1--FGF22

1.0

0.0

INCL_NON_REF_SPLICE

FRMD1^ENSG00000153303.17

chr6:168079106:-

FGF22^ENSG00000070388.11

chr19:643526:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1147:42680:26671

NO_LDAS

0.0039

1.2419

1.1589

"[""INTERCHROMOSOMAL[chr6--chr19]""]"

chr6:168079106-chr19:643526

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FOXO4--PRSS55

1.0

0.0

INCL_NON_REF_SPLICE

FOXO4^ENSG00000184481.17

chrX:71096981:+

PRSS55^ENSG00000184647.11

chr8:10529538:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2245:49160:1518

NO_LDAS

0.0039

1.8323

1.9899

"[""INTERCHROMOSOMAL[chrX--chr8]""]"

chrX:71096981-chr8:10529538

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FOXO1--LINC00598

1.0

0.0

ONLY_REF_SPLICE

FOXO1^ENSG00000150907.10

chr13:40665583:-

LINC00598^ENSG00000215483.11

chr13:40350302:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2448:3581:10234

NO_LDAS

0.0039

1.7232

1.9656

"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr13:0.02Mb]"",""NEIGHBORS[19860]""]"

chr13:40665583-chr13:40350302

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

FOXK1--AC022382.2

1.0

0.0

INCL_NON_REF_SPLICE

FOXK1^ENSG00000164916.11

chr7:4762794:+

AC022382.2^ENSG00000287878.1

chr3:9693666:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1203:1396:16904

NO_LDAS

0.0039

1.9329

1.6402

"[""INTERCHROMOSOMAL[chr7--chr3]""]"

chr7:4762794-chr3:9693666

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FOXI2--SYMPK

1.0

0.0

INCL_NON_REF_SPLICE

FOXI2^ENSG00000186766.8

chr10:127739659:+

SYMPK^ENSG00000125755.19

chr19:45830204:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1188:39800:14087

NO_LDAS

0.0039

1.8892

1.6402

"[""INTERCHROMOSOMAL[chr10--chr19]""]"

chr10:127739659-chr19:45830204

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FOS--POLD1

1.0

0.0

INCL_NON_REF_SPLICE

FOS^ENSG00000170345.10

chr14:75280711:+

POLD1^ENSG00000062822.15

chr19:50399463:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1466:4754:9519

NO_LDAS

0.0039

1.6402

1.9329

"[""INTERCHROMOSOMAL[chr14--chr19]""]"

chr14:75280711-chr19:50399463

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FIS1--PPIL1P1

1.0

0.0

INCL_NON_REF_SPLICE

FIS1^ENSG00000214253.9

chr7:101240142:-

PPIL1P1^ENSG00000237951.1

chr2:26162177:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1326:38287:17156

YES_LDAS

0.0039

1.6895

1.9656

"[""INTERCHROMOSOMAL[chr7--chr2]""]"

chr7:101240142-chr2:26162177

False

Read

count

too

low:

FAIL

FHOD3--TMEM242

1.0

0.0

INCL_NON_REF_SPLICE

FHOD3^ENSG00000134775.15

chr18:36297970:+

TMEM242^ENSG00000215712.11

chr6:157290060:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1104:2974:5400

NO_LDAS

0.0039

1.6895

1.9329

"[""INTERCHROMOSOMAL[chr18--chr6]""]"

chr18:36297970-chr6:157290060

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FDCSP--PSMC6

1.0

0.0

INCL_NON_REF_SPLICE

FDCSP^ENSG00000181617.6

chr4:70233026:+

PSMC6^ENSG00000100519.12

chr14:52708517:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1371:28668:23055

NO_LDAS

0.0039

1.4716

1.5301

"[""INTERCHROMOSOMAL[chr4--chr14]""]"

chr4:70233026-chr14:52708517

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FBXW4--XPO1

1.0

0.0

INCL_NON_REF_SPLICE

FBXW4^ENSG00000107829.15

chr10:101667886:-

XPO1^ENSG00000082898.19

chr2:61481268:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2435:15821:13751

NO_LDAS

0.0039

1.8892

1.9086

"[""INTERCHROMOSOMAL[chr10--chr2]""]"

chr10:101667886-chr2:61481268

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FBXL8--TMC4

1.0

0.0

ONLY_REF_SPLICE

FBXL8^ENSG00000135722.9

chr16:67161937:+

TMC4^ENSG00000167608.12

chr19:54163159:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1116:31596:15124

NO_LDAS

0.0039

1.6402

1.8062

"[""INTERCHROMOSOMAL[chr16--chr19]""]"

chr16:67161937-chr19:54163159

False

Read

count

too

low:

FAIL

FBRS--TRIO

1.0

0.0

INCL_NON_REF_SPLICE

FBRS^ENSG00000156860.16

chr16:30658642:+

TRIO^ENSG00000038382.20

chr5:14406573:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1404:37429:12644

NO_LDAS

0.0039

1.6729

1.7465

"[""INTERCHROMOSOMAL[chr16--chr5]""]"

chr16:30658642-chr5:14406573

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FARSA--SYCE2

1.0

0.0

INCL_NON_REF_SPLICE

FARSA^ENSG00000179115.11

chr19:12922728:-

SYCE2^ENSG00000161860.8

chr19:12918337:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2457:46466:15180

YES_LDAS

0.0039

1.9329

1.9086

"[""Babiceanu_Normal"",""INTRACHROMOSOMAL[chr19:0.00Mb]"",""NEIGHBORS[3186]""]"

chr19:12922728-chr19:12918337

True

pair|recurrent

breakpoints

Blacklisted

FAIL

FANCM--LURAP1L

1.0

0.0

INCL_NON_REF_SPLICE

FANCM^ENSG00000187790.11

chr14:45136499:+

LURAP1L^ENSG00000153714.6

chr9:12821710:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1316:43772:21052

NO_LDAS

0.0039

1.9656

1.9086

"[""INTERCHROMOSOMAL[chr14--chr9]""]"

chr14:45136499-chr9:12821710

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FAM53B--PSMB1

1.0

0.0

ONLY_REF_SPLICE

FAM53B^ENSG00000189319.14

chr10:124681607:-

PSMB1^ENSG00000008018.9

chr6:170549113:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1195:33700:9463

YES_LDAS

0.0039

1.8256

1.9086

"[""INTERCHROMOSOMAL[chr10--chr6]""]"

chr10:124681607-chr6:170549113

False

Read

count

too

low:

FAIL

FAM3B--AL035530.2

1.0

0.0

INCL_NON_REF_SPLICE

FAM3B^ENSG00000183844.17

chr21:41323066:+

AL035530.2^ENSG00000271913.7

chr6:159027962:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2439:40690:23672

NO_LDAS

0.0039

1.9656

1.7819

"[""INTERCHROMOSOMAL[chr21--chr6]""]"

chr21:41323066-chr6:159027962

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FAM171B--SZT2

1.0

0.0

INCL_NON_REF_SPLICE

FAM171B^ENSG00000144369.13

chr2:186694411:+

SZT2^ENSG00000198198.17

chr1:43428557:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1356:4632:10795

NO_LDAS

0.0039

1.9329

1.9656

"[""INTERCHROMOSOMAL[chr2--chr1]""]"

chr2:186694411-chr1:43428557

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

FAM157A--NOSIP

0.5

0.0

ONLY_REF_SPLICE

FAM157A^ENSG00000236438.7

chr3:198210368:+

NOSIP^ENSG00000142546.14

chr19:49560692:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1224:36847:6283

YES_LDAS

0.0019

1.9329

1.8295

"[""INTERCHROMOSOMAL[chr3--chr19]""]"

chr3:198210368-chr19:49560692

True

pair|recurrent

breakpoints

Blacklisted

FAIL

FAM117B--RASAL1

1.0

0.0

INCL_NON_REF_SPLICE

FAM117B^ENSG00000138439.12

chr2:202635049:+

RASAL1^ENSG00000111344.11

chr12:113130941:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2431:37308:28520

NO_LDAS

0.0039

1.231

1.8295

"[""INTERCHROMOSOMAL[chr2--chr12]""]"

chr2:202635049-chr12:113130941

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EYA3--HNRNPA1

0.5

0.0

INCL_NON_REF_SPLICE

EYA3^ENSG00000158161.16

chr1:28017175:-

HNRNPA1^ENSG00000135486.19

chr12:54284258:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1113:8321:10598

NO_LDAS

0.0019

1.9086

1.6895

"[""INTERCHROMOSOMAL[chr1--chr12]""]"

chr1:28017175-chr12:54284258

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EXOC4--HERC4

1.0

0.0

ONLY_REF_SPLICE

EXOC4^ENSG00000131558.15

chr7:133480138:+

HERC4^ENSG00000148634.16

chr10:67966802:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1257:21460:13961

YES_LDAS

0.0039

1.8323

1.4566

"[""INTERCHROMOSOMAL[chr7--chr10]""]"

chr7:133480138-chr10:67966802

False

Read

count

too

low:

FAIL

EVA1C--DGCR2

1.0

0.0

ONLY_REF_SPLICE

EVA1C^ENSG00000166979.13

chr21:32413013:+

DGCR2^ENSG00000070413.20

chr22:19041959:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1140:43812:22579

YES_LDAS

0.0039

1.8323

1.9899

"[""INTERCHROMOSOMAL[chr21--chr22]""]"

chr21:32413013-chr22:19041959

False

Read

count

too

low:

FAIL

ESYT2--NFATC2

1.0

0.0

ONLY_REF_SPLICE

ESYT2^ENSG00000117868.17

chr7:158829089:-

NFATC2^ENSG00000101096.20

chr20:51523596:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1109:12455:9295

YES_LDAS

0.0039

1.6895

1.7819

"[""INTERCHROMOSOMAL[chr7--chr20]""]"

chr7:158829089-chr20:51523596

False

Read

count

too

low:

FAIL

ESCO1--ZC3H13

1.0

0.0

ONLY_REF_SPLICE

ESCO1^ENSG00000141446.11

chr18:21600623:-

ZC3H13^ENSG00000123200.17

chr13:46045516:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1130:6550:9267

YES_LDAS

0.0039

1.5058

1.7968

"[""INTERCHROMOSOMAL[chr18--chr13]""]"

chr18:21600623-chr13:46045516

False

Read

count

too

low:

FAIL

ERBB4--DNAH7

1.0

0.0

ONLY_REF_SPLICE

ERBB4^ENSG00000178568.15

chr2:212538449:-

DNAH7^ENSG00000118997.14

chr2:195972466:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2446:19025:23139

YES_LDAS

0.0039

1.9899

1.8892

"[""INTRACHROMOSOMAL[chr2:15.31Mb]""]"

chr2:212538449-chr2:195972466

False

Read

count

too

low:

FAIL

ERBB3--SSH1

1.0

0.0

INCL_NON_REF_SPLICE

ERBB3^ENSG00000065361.16

chr12:56088647:+

SSH1^ENSG00000084112.15

chr12:108787833:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2276:46029:6325

NO_LDAS

0.0039

1.8323

1.4716

"[""INTRACHROMOSOMAL[chr12:52.67Mb]""]"

chr12:56088647-chr12:108787833

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ERBB2--RASIP1

1.0

0.0

INCL_NON_REF_SPLICE

ERBB2^ENSG00000141736.14

chr17:39716526:+

RASIP1^ENSG00000105538.10

chr19:48720628:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1319:46102:24695

NO_LDAS

0.0039

1.7819

1.8892

"[""INTERCHROMOSOMAL[chr17--chr19]""]"

chr17:39716526-chr19:48720628

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EPCAM--PITPNM2

1.0

0.0

INCL_NON_REF_SPLICE

EPCAM^ENSG00000119888.11

chr2:47369500:+

PITPNM2^ENSG00000090975.13

chr12:122990673:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2417:47364:19146

NO_LDAS

0.0039

1.5058

1.7968

"[""INTERCHROMOSOMAL[chr2--chr12]""]"

chr2:47369500-chr12:122990673

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EPC1--SH3TC1

1.0

0.0

ONLY_REF_SPLICE

EPC1^ENSG00000120616.16

chr10:32346763:-

SH3TC1^ENSG00000125089.17

chr4:8231976:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1216:43820:19202

YES_LDAS

0.0039

1.5628

"[""INTERCHROMOSOMAL[chr10--chr4]""]"

chr10:32346763-chr4:8231976

False

Read

count

too

low:

FAIL

ENDOV--SPEG

1.0

0.0

INCL_NON_REF_SPLICE

ENDOV^ENSG00000173818.17

chr17:80415821:+

SPEG^ENSG00000072195.15

chr2:219451138:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2326:4972:3873

NO_LDAS

0.0039

1.9329

1.9086

"[""INTERCHROMOSOMAL[chr17--chr2]""]"

chr17:80415821-chr2:219451138

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EML6--EEF1D

1.0

0.0

INCL_NON_REF_SPLICE

EML6^ENSG00000214595.12

chr2:54902013:+

EEF1D^ENSG00000104529.17

chr8:143581326:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1116:52032:5372

NO_LDAS

0.0039

1.9899

1.5628

"[""INTERCHROMOSOMAL[chr2--chr8]""]"

chr2:54902013-chr8:143581326

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ELOBP1--C12orf43

0.25

0.0

INCL_NON_REF_SPLICE

ELOBP1^ENSG00000234152.1

chr13:25365803:-

C12orf43^ENSG00000157895.11

chr12:121003725:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1136:11630:18375

NO_LDAS

0.001

1.9329

1.8062

"[""INTERCHROMOSOMAL[chr13--chr12]""]"

chr13:25365803-chr12:121003725

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ELOB--PSAPL1

1.0

0.0

INCL_NON_REF_SPLICE

ELOB^ENSG00000103363.15

chr16:2775451:-

PSAPL1^ENSG00000178597.7

chr4:7434413:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2146:7982:1238

NO_LDAS

0.0039

1.7819

1.9656

"[""INTERCHROMOSOMAL[chr16--chr4]""]"

chr16:2775451-chr4:7434413

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

EIF4H--TTTY13

0.5

0.0

INCL_NON_REF_SPLICE

EIF4H^ENSG00000106682.16

chr7:74194878:+

TTTY13^ENSG00000184991.3

chrY:21566118:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1164:13256:24611

NO_LDAS

0.0019

1.5301

1.4256

"[""INTERCHROMOSOMAL[chr7--chrY]""]"

chr7:74194878-chrY:21566118

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

EEF2--DPP6

1.0

0.0

INCL_NON_REF_SPLICE

EEF2^ENSG00000167658.16

chr19:3976616:-

DPP6^ENSG00000130226.17

chr7:154795952:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1381:45649:18221

NO_LDAS

0.0039

1.7968

1.9086

"[""INTERCHROMOSOMAL[chr19--chr7]""]"

chr19:3976616-chr7:154795952

True

pair|recurrent

breakpoints

Blacklisted

FAIL

EEF1DP7--APP

1.0

0.0

INCL_NON_REF_SPLICE

EEF1DP7^ENSG00000263883.1

chr17:63636813:+

APP^ENSG00000142192.21

chr21:26021986:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1133:24574:29417

NO_LDAS

0.0039

1.6895

1.8323

"[""INTERCHROMOSOMAL[chr17--chr21]""]"

chr17:63636813-chr21:26021986

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

EEF1D--TRIM11

1.0

0.0

INCL_NON_REF_SPLICE

EEF1D^ENSG00000104529.17

chr8:143586219:-

TRIM11^ENSG00000154370.16

chr1:228402865:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1141:33716:11089

NO_LDAS

0.0039

1.9899

1.9219

"[""INTERCHROMOSOMAL[chr8--chr1]""]"

chr8:143586219-chr1:228402865

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ECH1--AL445228.2

1.0

0.0

INCL_NON_REF_SPLICE

ECH1^ENSG00000104823.9

chr19:38816284:-

AL445228.2^ENSG00000271387.1

chr1:184386631:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2393:15538:17941

NO_LDAS

0.0039

1.8295

1.5628

"[""INTERCHROMOSOMAL[chr19--chr1]""]"

chr19:38816284-chr1:184386631

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DYRK1A--XKR6

1.0

0.0

ONLY_REF_SPLICE

DYRK1A^ENSG00000157540.22

chr21:37420384:+

XKR6^ENSG00000171044.11

chr8:11195221:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1113:38780:11874

YES_LDAS

0.0039

1.8892

1.9899

"[""INTERCHROMOSOMAL[chr21--chr8]""]"

chr21:37420384-chr8:11195221

False

Read

count

too

low:

FAIL

DYRK1A--ADGRG1

1.0

0.0

INCL_NON_REF_SPLICE

DYRK1A^ENSG00000157540.22

chr21:37481534:+

ADGRG1^ENSG00000205336.14

chr16:57650253:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1444:47825:1729

YES_LDAS

0.0039

1.9329

1.9656

"[""INTERCHROMOSOMAL[chr21--chr16]""]"

chr21:37481534-chr16:57650253

False

Read

count

too

low:

FAIL

DYNC1H1--ANAPC2

1.0

0.0

ONLY_REF_SPLICE

DYNC1H1^ENSG00000197102.13

chr14:102016086:+

ANAPC2^ENSG00000176248.9

chr9:137185087:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1401:23061:23350

YES_LDAS

0.0039

1.9899

1.7232

"[""INTERCHROMOSOMAL[chr14--chr9]""]"

chr14:102016086-chr9:137185087

False

Read

count

too

low:

FAIL

DUSP5--EHBP1L1

1.0

0.0

INCL_NON_REF_SPLICE

DUSP5^ENSG00000138166.6

chr10:110498367:+

EHBP1L1^ENSG00000173442.13

chr11:65585115:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2221:34549:11832

NO_LDAS

0.0039

1.1589

0.971

"[""INTERCHROMOSOMAL[chr10--chr11]""]"

chr10:110498367-chr11:65585115

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DPP7--MUS81

1.0

0.0

INCL_NON_REF_SPLICE

DPP7^ENSG00000176978.14

chr9:137111873:-

MUS81^ENSG00000172732.12

chr11:65860311:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2154:40560:25437

NO_LDAS

0.0039

1.3383

1.8892

"[""INTERCHROMOSOMAL[chr9--chr11]""]"

chr9:137111873-chr11:65860311

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DPP4--GFM2

1.0

0.0

INCL_NON_REF_SPLICE

DPP4^ENSG00000197635.11

chr2:162026888:-

GFM2^ENSG00000164347.18

chr5:74741609:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1435:22900:18922

NO_LDAS

0.0039

1.7465

1.7819

"[""INTERCHROMOSOMAL[chr2--chr5]""]"

chr2:162026888-chr5:74741609

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DONSON--JPT1

1.0

0.0

INCL_NON_REF_SPLICE

DONSON^ENSG00000159147.18

chr21:33577609:-

JPT1^ENSG00000189159.16

chr17:75153769:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1315:42227:25353

NO_LDAS

0.0039

0.9968

1.6895

"[""INTERCHROMOSOMAL[chr21--chr17]""]"

chr21:33577609-chr17:75153769

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DOCK9--MROH5

1.0

0.0

INCL_NON_REF_SPLICE

DOCK9^ENSG00000088387.19

chr13:98848592:-

MROH5^ENSG00000226807.6

chr8:141474013:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2428:9826:23462

NO_LDAS

0.0039

1.9329

1.6402

"[""INTERCHROMOSOMAL[chr13--chr8]""]"

chr13:98848592-chr8:141474013

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DNM2--KLC4

1.0

0.0

INCL_NON_REF_SPLICE

DNM2^ENSG00000079805.18

chr19:10829268:+

KLC4^ENSG00000137171.15

chr6:43060064:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1288:49791:29571

NO_LDAS

0.0039

1.5301

1.5546

"[""INTERCHROMOSOMAL[chr19--chr6]""]"

chr19:10829268-chr6:43060064

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DNASE1--LPO

1.0

0.0

INCL_NON_REF_SPLICE

DNASE1^ENSG00000213918.10

chr16:3611913:+

LPO^ENSG00000167419.11

chr17:58252182:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1158:1518:3382

NO_LDAS

0.0039

1.4295

1.7465

"[""INTERCHROMOSOMAL[chr16--chr17]""]"

chr16:3611913-chr17:58252182

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DNAJB4--ATAD3B

1.0

0.0

ONLY_REF_SPLICE

DNAJB4^ENSG00000162616.9

chr1:77981302:+

ATAD3B^ENSG00000160072.20

chr1:1478644:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1104:9802:15124

YES_LDAS

0.0039

1.9656

1.8892

"[""INTRACHROMOSOMAL[chr1:76.48Mb]""]"

chr1:77981302-chr1:1478644

False

Read

count

too

low:

FAIL

DNAH1--SAT2

0.5

0.0

INCL_NON_REF_SPLICE

DNAH1^ENSG00000114841.17

chr3:52353603:+

SAT2^ENSG00000141504.12

chr17:7626614:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1221:42486:14003

NO_LDAS

0.0019

1.7968

1.8892

"[""INTERCHROMOSOMAL[chr3--chr17]""]"

chr3:52353603-chr17:7626614

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DLG5--PRKG2

1.0

0.0

INCL_NON_REF_SPLICE

DLG5^ENSG00000151208.17

chr10:77841881:-

PRKG2^ENSG00000138669.9

chr4:81174892:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2243:24048:20071

NO_LDAS

0.0039

1.6402

1.8892

"[""INTERCHROMOSOMAL[chr10--chr4]""]"

chr10:77841881-chr4:81174892

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DIP2C--NR2F1

1.0

0.0

INCL_NON_REF_SPLICE

DIP2C^ENSG00000151240.17

chr10:689660:-

NR2F1^ENSG00000175745.14

chr5:93584823:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2184:36960:14578

NO_LDAS

0.0039

1.5301

1.231

"[""INTERCHROMOSOMAL[chr10--chr5]""]"

chr10:689660-chr5:93584823

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DHX58--CPSF1

1.0

0.0

INCL_NON_REF_SPLICE

DHX58^ENSG00000108771.13

chr17:42105102:-

CPSF1^ENSG00000071894.17

chr8:144399710:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1373:51838:23728

NO_LDAS

0.0039

1.8892

1.9656

"[""INTERCHROMOSOMAL[chr17--chr8]""]"

chr17:42105102-chr8:144399710

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DHX30--ATG3

1.0

0.0

INCL_NON_REF_SPLICE

DHX30^ENSG00000132153.15

chr3:47846302:+

ATG3^ENSG00000144848.11

chr3:112537890:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2475:10037:29487

NO_LDAS

0.0039

1.6895

1.9086

"[""INTRACHROMOSOMAL[chr3:64.68Mb]""]"

chr3:47846302-chr3:112537890

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DHRS4-AS1--AL022326.1

1.0

0.0

INCL_NON_REF_SPLICE

DHRS4-AS1^ENSG00000215256.4

chr14:23940350:-

AL022326.1^ENSG00000224794.2

chr22:39294309:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1161:19914:21766

NO_LDAS

0.0039

0.3534

1.9656

"[""INTERCHROMOSOMAL[chr14--chr22]""]"

chr14:23940350-chr22:39294309

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DGKZ--CHRND

0.5

0.0

INCL_NON_REF_SPLICE

DGKZ^ENSG00000149091.15

chr11:46367399:+

CHRND^ENSG00000135902.10

chr2:232534093:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1294:1866:14410

NO_LDAS

0.0019

1.8892

1.9329

"[""INTERCHROMOSOMAL[chr11--chr2]""]"

chr11:46367399-chr2:232534093

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DGAT1--SELENOS

1.0

0.0

ONLY_REF_SPLICE

DGAT1^ENSG00000185000.12

chr8:144318461:-

SELENOS^ENSG00000131871.15

chr15:101276675:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1328:37397:12224

NO_LDAS

0.0039

1.9329

1.5656

"[""INTERCHROMOSOMAL[chr8--chr15]""]"

chr8:144318461-chr15:101276675

False

Read

count

too

low:

FAIL

DEPTOR--TRAV1-2

0.5

0.0

INCL_NON_REF_SPLICE

DEPTOR^ENSG00000155792.10

chr8:120049735:+

TRAV1-2^ENSG00000256553.1

chr14:21642876:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1269:4560:24625

NO_LDAS

0.0019

1.7465

1.2729

"[""INTERCHROMOSOMAL[chr8--chr14]""]"

chr8:120049735-chr14:21642876

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DENND5A--ZNF317

1.0

0.0

INCL_NON_REF_SPLICE

DENND5A^ENSG00000184014.9

chr11:9180760:-

ZNF317^ENSG00000130803.15

chr19:9160912:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2367:4818:6829

NO_LDAS

0.0039

1.5058

1.9656

"[""INTERCHROMOSOMAL[chr11--chr19]""]"

chr11:9180760-chr19:9160912

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DENND4B--MRPS15P1

1.0

0.0

INCL_NON_REF_SPLICE

DENND4B^ENSG00000198837.10

chr1:153934797:-

MRPS15P1^ENSG00000259186.1

chr15:73483279:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2498:8758:20463

NO_LDAS

0.0039

1.5656

"[""INTERCHROMOSOMAL[chr1--chr15]""]"

chr1:153934797-chr15:73483279

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DDTL--HULC

0.5

0.0

INCL_NON_REF_SPLICE

DDTL^ENSG00000099974.8

chr22:23967561:+

HULC^ENSG00000285219.2

chr6:8856398:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1127:39031:8328

YES_LDAS

0.0019

1.7056

1.8062

"[""INTERCHROMOSOMAL[chr22--chr6]""]"

chr22:23967561-chr6:8856398

False

Read

count

too

low:

FAIL

DDT--HULC

0.5

0.0

INCL_NON_REF_SPLICE

DDT^ENSG00000099977.14

chr22:23973768:-

HULC^ENSG00000285219.2

chr6:8856398:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1127:39031:8328

YES_LDAS

0.0019

1.7056

1.8062

"[""INTERCHROMOSOMAL[chr22--chr6]""]"

chr22:23973768-chr6:8856398

False

Read

count

too

low:

FAIL

DDR2--RPA3

1.0

0.0

INCL_NON_REF_SPLICE

DDR2^ENSG00000162733.19

chr1:162775725:+

RPA3^ENSG00000106399.11

chr7:7641083:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1256:19914:29025

NO_LDAS

0.0039

1.8295

1.8892

"[""INTERCHROMOSOMAL[chr1--chr7]""]"

chr1:162775725-chr7:7641083

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DCAF8--AC009486.1

1.0

0.0

INCL_NON_REF_SPLICE

DCAF8^ENSG00000132716.19

chr1:160239697:-

AC009486.1^ENSG00000261117.1

chr2:12715408:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1455:47849:15335

NO_LDAS

0.0039

1.9329

1.9086

"[""INTERCHROMOSOMAL[chr1--chr2]""]"

chr1:160239697-chr2:12715408

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

DAB2IP--PCDHAC2

1.0

0.0

INCL_NON_REF_SPLICE

DAB2IP^ENSG00000136848.17

chr9:121760038:+

PCDHAC2^ENSG00000243232.6

chr5:140967336:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2389:15918:18627

NO_LDAS

0.0039

1.8892

1.9656

"[""INTERCHROMOSOMAL[chr9--chr5]""]"

chr9:121760038-chr5:140967336

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CYTH1--SEC14L1

1.0

0.0

ONLY_REF_SPLICE

CYTH1^ENSG00000108669.16

chr17:78782202:-

SEC14L1^ENSG00000129657.16

chr17:77190803:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1411:13378:1084

YES_LDAS

0.0039

1.8256

1.8323

"[""INTRACHROMOSOMAL[chr17:1.46Mb]""]"

chr17:78782202-chr17:77190803

False

Read

count

too

low:

FAIL

CTDP1--CCDC8

1.0

0.0

INCL_NON_REF_SPLICE

CTDP1^ENSG00000060069.17

chr18:79735924:+

CCDC8^ENSG00000169515.8

chr19:46411789:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1134:4220:24288

NO_LDAS

0.0039

1.6049

1.8323

"[""INTERCHROMOSOMAL[chr18--chr19]""]"

chr18:79735924-chr19:46411789

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CSMD3--METTL26

0.25

0.0

INCL_NON_REF_SPLICE

CSMD3^ENSG00000164796.18

chr8:112310984:-

METTL26^ENSG00000130731.16

chr16:634705:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2470:4584:22537

NO_LDAS

0.001

1.6729

1.5058

"[""INTERCHROMOSOMAL[chr8--chr16]""]"

chr8:112310984-chr16:634705

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CRACR2B--SEMA4C

1.0

0.0

INCL_NON_REF_SPLICE

CRACR2B^ENSG00000177685.17

chr11:830713:+

SEMA4C^ENSG00000168758.11

chr2:96870076:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1470:39007:8707

NO_LDAS

0.0039

1.6402

1.5656

"[""INTERCHROMOSOMAL[chr11--chr2]""]"

chr11:830713-chr2:96870076

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CRACR2A--ETV6

1.0

0.0

ONLY_REF_SPLICE

CRACR2A^ENSG00000130038.10

chr12:3713237:-

ETV6^ENSG00000139083.11

chr12:11884445:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1152:4940:14214

NO_LDAS

0.0039

1.7465

1.9219

"[""INTRACHROMOSOMAL[chr12:7.88Mb]""]"

chr12:3713237-chr12:11884445

False

Read

count

too

low:

FAIL

COX4I1--PACSIN2

1.0

0.0

ONLY_REF_SPLICE

COX4I1^ENSG00000131143.10

chr16:85801278:+

PACSIN2^ENSG00000100266.19

chr22:42858522:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1290:14761:2892

NO_LDAS

0.0039

1.9656

"[""INTERCHROMOSOMAL[chr16--chr22]""]"

chr16:85801278-chr22:42858522

False

Read

count

too

low:

FAIL

COL7A1--LRRC8C

1.0

0.0

INCL_NON_REF_SPLICE

COL7A1^ENSG00000114270.18

chr3:48565410:-

LRRC8C^ENSG00000171488.15

chr1:89769453:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2118:23968:10682

NO_LDAS

0.0039

1.5628

1.7465

"[""INTERCHROMOSOMAL[chr3--chr1]""]"

chr3:48565410-chr1:89769453

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

COL6A2--CCL21

1.0

0.0

ONLY_REF_SPLICE

COL6A2^ENSG00000142173.16

chr21:46116053:+

CCL21^ENSG00000137077.8

chr9:34709897:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1447:20238:25690

NO_LDAS

0.0039

1.8892

1.5546

"[""INTERCHROMOSOMAL[chr21--chr9]""]"

chr21:46116053-chr9:34709897

False

Read

count

too

low:

FAIL

COL5A2--MYH10

1.0

0.0

INCL_NON_REF_SPLICE

COL5A2^ENSG00000204262.14

chr2:189063180:-

MYH10^ENSG00000133026.13

chr17:8493783:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2261:47234:21836

YES_LDAS

0.0039

1.8892

1.3996

"[""INTERCHROMOSOMAL[chr2--chr17]""]"

chr2:189063180-chr17:8493783

False

Read

count

too

low:

FAIL

COL4A5--EP400

1.0

0.0

ONLY_REF_SPLICE

COL4A5^ENSG00000188153.14

chrX:108668504:+

EP400^ENSG00000183495.14

chr12:132044671:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1131:46668:8889

YES_LDAS

0.0039

1.9086

1.9329

"[""INTERCHROMOSOMAL[chrX--chr12]""]"

chrX:108668504-chr12:132044671

False

Read

count

too

low:

FAIL

COL18A1--MBL3P

1.0

0.0

INCL_NON_REF_SPLICE

COL18A1^ENSG00000182871.16

chr21:45490871:+

MBL3P^ENSG00000219430.2

chr10:79584799:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1308:26572:7740

NO_LDAS

0.0039

1.4295

1.8892

"[""INTERCHROMOSOMAL[chr21--chr10]""]"

chr21:45490871-chr10:79584799

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

COL17A1--PSMG3

1.0

0.0

INCL_NON_REF_SPLICE

COL17A1^ENSG00000065618.21

chr10:104039445:-

PSMG3^ENSG00000157778.9

chr7:1567724:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2346:19510:16217

NO_LDAS

0.0039

1.7465

"[""INTERCHROMOSOMAL[chr10--chr7]""]"

chr10:104039445-chr7:1567724

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

COBL--PRDM16-DT

1.0

0.0

INCL_NON_REF_SPLICE

COBL^ENSG00000106078.19

chr7:51028119:-

PRDM16-DT^ENSG00000177133.11

chr1:3067566:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2451:34226:22004

NO_LDAS

0.0039

1.9219

1.5656

"[""INTERCHROMOSOMAL[chr7--chr1]""]"

chr7:51028119-chr1:3067566

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CNOT9--RN7SL724P

1.0

0.0

INCL_NON_REF_SPLICE

CNOT9^ENSG00000144580.14

chr2:218574064:+

RN7SL724P^ENSG00000244692.3

chr3:139609904:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1109:18167:8174

YES_LDAS

0.0039

1.8892

1.9219

"[""INTERCHROMOSOMAL[chr2--chr3]""]"

chr2:218574064-chr3:139609904

False

Read

count

too

low:

FAIL

CMIP--CD63

1.0

0.0

INCL_NON_REF_SPLICE

CMIP^ENSG00000153815.17

chr16:81664424:+

CD63^ENSG00000135404.12

chr12:55727339:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1413:20254:20113

NO_LDAS

0.0039

1.5219

1.8295

"[""INTERCHROMOSOMAL[chr16--chr12]""]"

chr16:81664424-chr12:55727339

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CLPTM1--SLC9A8

1.0

0.0

INCL_NON_REF_SPLICE

CLPTM1^ENSG00000104853.16

chr19:44992354:+

SLC9A8^ENSG00000197818.12

chr20:49888382:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1120:51587:8384

NO_LDAS

0.0039

1.7819

1.9329

"[""INTERCHROMOSOMAL[chr19--chr20]""]"

chr19:44992354-chr20:49888382

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CHMP7--LINC02476

1.0

0.0

INCL_NON_REF_SPLICE

CHMP7^ENSG00000147457.14

chr8:23258081:+

LINC02476^ENSG00000225546.6

chr7:119751006:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2307:45770:20113

NO_LDAS

0.0039

1.7056

1.9656

"[""INTERCHROMOSOMAL[chr8--chr7]""]"

chr8:23258081-chr7:119751006

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CHFR--AL049872.1

0.12

0.0

INCL_NON_REF_SPLICE

CHFR^ENSG00000072609.18

chr12:132841518:-

AL049872.1^ENSG00000259020.3

chr14:92026611:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2101:12650:25522

NO_LDAS

0.0005

1.9899

1.6895

"[""INTERCHROMOSOMAL[chr12--chr14]""]"

chr12:132841518-chr14:92026611

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CHD6--PAXBP1

1.0

0.0

INCL_NON_REF_SPLICE

CHD6^ENSG00000124177.16

chr20:41483309:-

PAXBP1^ENSG00000159086.15

chr21:32751134:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1136:39638:22747

NO_LDAS

0.0039

1.9086

1.4566

"[""INTERCHROMOSOMAL[chr20--chr21]""]"

chr20:41483309-chr21:32751134

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CFAP74--LINC01847

0.5

0.0

INCL_NON_REF_SPLICE

CFAP74^ENSG00000142609.18

chr1:1964888:-

LINC01847^ENSG00000253311.3

chr5:159751124:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1391:39492:14900

NO_LDAS

0.0019

1.6402

1.7465

"[""INTERCHROMOSOMAL[chr1--chr5]""]"

chr1:1964888-chr5:159751124

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CEP20--AC087280.2

1.0

0.0

INCL_NON_REF_SPLICE

CEP20^ENSG00000133393.13

chr16:15884008:-

AC087280.2^ENSG00000283415.2

chr11:6823763:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1167:45552:11299

YES_LDAS

0.0039

1.9656

1.9329

"[""INTERCHROMOSOMAL[chr16--chr11]""]"

chr16:15884008-chr11:6823763

False

Read

count

too

low:

FAIL

CELSR2--PARD6G

1.0

0.0

INCL_NON_REF_SPLICE

CELSR2^ENSG00000143126.8

chr1:109271296:+

PARD6G^ENSG00000178184.16

chr18:80247494:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1182:3759:4573

NO_LDAS

0.0039

1.9086

1.6895

"[""INTERCHROMOSOMAL[chr1--chr18]""]"

chr1:109271296-chr18:80247494

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CELF4--AC008013.1

1.0

0.0

ONLY_REF_SPLICE

CELF4^ENSG00000101489.20

chr18:37253767:-

AC008013.1^ENSG00000226472.8

chr12:30988586:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1132:11404:13863

NO_LDAS

0.0039

1.8062

1.7968

"[""INTERCHROMOSOMAL[chr18--chr12]""]"

chr18:37253767-chr12:30988586

False

Read

count

too

low:

FAIL

CELF1--FRMD3

1.0

0.0

INCL_NON_REF_SPLICE

CELF1^ENSG00000149187.18

chr11:47475336:-

FRMD3^ENSG00000172159.16

chr9:83298776:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1488:25852:13583

NO_LDAS

0.0039

1.4295

1.9329

"[""INTERCHROMOSOMAL[chr11--chr9]""]"

chr11:47475336-chr9:83298776

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CDKN1C--TTLL11

1.0

0.0

INCL_NON_REF_SPLICE

CDKN1C^ENSG00000129757.14

chr11:2884974:-

TTLL11^ENSG00000175764.15

chr9:122092965:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2411:19607:3606

NO_LDAS

0.0039

1.4295

1.3996

"[""INTERCHROMOSOMAL[chr11--chr9]""]"

chr11:2884974-chr9:122092965

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CDKN1A--ADAMTS9

1.0

0.0

ONLY_REF_SPLICE

CDKN1A^ENSG00000124762.14

chr6:36678798:+

ADAMTS9^ENSG00000163638.13

chr3:64658791:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2394:22293:25381

NO_LDAS

0.0039

1.7819

1.5546

"[""INTERCHROMOSOMAL[chr6--chr3]""]"

chr6:36678798-chr3:64658791

False

Read

count

too

low:

FAIL

CDK18--NOC4L

1.0

0.0

ONLY_REF_SPLICE

CDK18^ENSG00000117266.16

chr1:205504878:+

NOC4L^ENSG00000184967.7

chr12:132150981:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1147:46806:27651

NO_LDAS

0.0039

1.6895

1.5628

"[""INTERCHROMOSOMAL[chr1--chr12]""]"

chr1:205504878-chr12:132150981

False

Read

count

too

low:

FAIL

CDK16--ERMAP

1.0

0.0

INCL_NON_REF_SPLICE

CDK16^ENSG00000102225.16

chrX:47223675:+

ERMAP^ENSG00000164010.15

chr1:42842517:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1180:23442:1112

NO_LDAS

0.0039

1.3383

1.8892

"[""INTERCHROMOSOMAL[chrX--chr1]""]"

chrX:47223675-chr1:42842517

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CDIN1--RACK1

1.0

0.0

INCL_NON_REF_SPLICE

CDIN1^ENSG00000186073.14

chr15:36746951:+

RACK1^ENSG00000204628.12

chr5:181241639:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1343:7051:3606

NO_LDAS

0.0039

1.9656

1.5656

"[""INTERCHROMOSOMAL[chr15--chr5]""]"

chr15:36746951-chr5:181241639

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

CDC34--TNKS1BP1

1.0

0.0

INCL_NON_REF_SPLICE

CDC34^ENSG00000099804.9

chr19:536360:+

TNKS1BP1^ENSG00000149115.14

chr11:57320683:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1391:34792:17184

NO_LDAS

0.0039

1.4256

1.371

"[""INTERCHROMOSOMAL[chr19--chr11]""]"

chr19:536360-chr11:57320683

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CD93--LRRC32

1.0

0.0

INCL_NON_REF_SPLICE

CD93^ENSG00000125810.10

chr20:23085251:-

LRRC32^ENSG00000137507.11

chr11:76659760:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2401:51554:10458

NO_LDAS

0.0039

1.6729

1.7968

"[""INTERCHROMOSOMAL[chr20--chr11]""]"

chr20:23085251-chr11:76659760

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CD83--AL009177.1

1.0

0.0

ONLY_REF_SPLICE

CD83^ENSG00000112149.10

chr6:14118065:+

AL009177.1^ENSG00000286277.1

chr6:14498057:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1123:37122:14270

YES_LDAS

0.0039

1.9329

1.8295

"[""INTRACHROMOSOMAL[chr6:0.29Mb]""]"

chr6:14118065-chr6:14498057

True

pair|recurrent

breakpoints

Blacklisted

FAIL

CD81--CCDC130

1.0

0.0

INCL_NON_REF_SPLICE

CD81^ENSG00000110651.12

chr11:2377541:+

CCDC130^ENSG00000104957.14

chr19:13762850:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2303:43853:24499

NO_LDAS

0.0039

0.9183

1.7056

"[""INTERCHROMOSOMAL[chr11--chr19]""]"

chr11:2377541-chr19:13762850

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CD47--H2AZ2

1.0

0.0

INCL_NON_REF_SPLICE

CD47^ENSG00000196776.17

chr3:108090987:-

H2AZ2^ENSG00000105968.19

chr7:44848043:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1132:22746:5456

NO_LDAS

0.0039

1.231

"[""INTERCHROMOSOMAL[chr3--chr7]""]"

chr3:108090987-chr7:44848043

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CD164L2--GHSR

1.0

0.0

INCL_NON_REF_SPLICE

CD164L2^ENSG00000174950.11

chr1:27382328:-

GHSR^ENSG00000121853.4

chr3:172448194:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1113:7852:15026

NO_LDAS

0.0039

1.9329

1.5546

"[""INTERCHROMOSOMAL[chr1--chr3]""]"

chr1:27382328-chr3:172448194

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CCN2--AC073611.1

1.0

0.0

INCL_NON_REF_SPLICE

CCN2^ENSG00000118523.6

chr6:131951164:-

AC073611.1^ENSG00000288663.1

chr12:53299510:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1283:50737:3887

NO_LDAS

0.0039

1.6402

1.7819

"[""INTERCHROMOSOMAL[chr6--chr12]""]"

chr6:131951164-chr12:53299510

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CCDC88B--AC005329.3

1.0

0.0

INCL_NON_REF_SPLICE

CCDC88B^ENSG00000168071.22

chr11:64343615:+

AC005329.3^ENSG00000280486.2

chr19:1387105:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1178:6404:27231

NO_LDAS

0.0039

1.7968

1.8062

"[""INTERCHROMOSOMAL[chr11--chr19]""]"

chr11:64343615-chr19:1387105

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CCDC85C--GPI

1.0

0.0

INCL_NON_REF_SPLICE

CCDC85C^ENSG00000205476.9

chr14:99510624:-

GPI^ENSG00000105220.17

chr19:34366783:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1198:36628:15068

NO_LDAS

0.0039

1.7232

1.7819

"[""INTERCHROMOSOMAL[chr14--chr19]""]"

chr14:99510624-chr19:34366783

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CCDC6--CIART

1.0

0.0

INCL_NON_REF_SPLICE

CCDC6^ENSG00000108091.11

chr10:59906118:-

CIART^ENSG00000159208.16

chr1:150282594:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2171:37518:16329

NO_LDAS

0.0039

1.9656

1.6895

"[""INTERCHROMOSOMAL[chr10--chr1]""]"

chr10:59906118-chr1:150282594

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CCDC117--ITGB4

1.0

0.0

INCL_NON_REF_SPLICE

CCDC117^ENSG00000159873.10

chr22:28773370:+

ITGB4^ENSG00000132470.14

chr17:75733662:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1350:38732:25746

NO_LDAS

0.0039

1.9086

1.6402

"[""INTERCHROMOSOMAL[chr22--chr17]""]"

chr22:28773370-chr17:75733662

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CBX8--RBM25

1.0

0.0

INCL_NON_REF_SPLICE

CBX8^ENSG00000141570.11

chr17:79795264:-

RBM25^ENSG00000119707.14

chr14:73105901:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2269:41393:14942

NO_LDAS

0.0039

1.3383

0.9968

"[""INTERCHROMOSOMAL[chr17--chr14]""]"

chr17:79795264-chr14:73105901

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

CASTOR2--FAM157B

1.0

0.0

ONLY_REF_SPLICE

CASTOR2^ENSG00000274070.2

chr7:74965098:+

FAM157B^ENSG00000233013.10

chr9:138243620:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1415:6347:25171

NO_LDAS

0.0039

1.8892

"[""INTERCHROMOSOMAL[chr7--chr9]""]"

chr7:74965098-chr9:138243620

False

Read

count

too

low:

FAIL

CAST--CCDC7

1.0

0.0

INCL_NON_REF_SPLICE

CAST^ENSG00000153113.24

chr5:96712357:+

CCDC7^ENSG00000216937.13

chr10:32472481:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1327:6671:10262

NO_LDAS

0.0039

1.9656

1.6402

"[""INTERCHROMOSOMAL[chr5--chr10]""]"

chr5:96712357-chr10:32472481

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CAPRIN1--TBC1D4

0.33

0.0

INCL_NON_REF_SPLICE

CAPRIN1^ENSG00000135387.21

chr11:34090678:+

TBC1D4^ENSG00000136111.14

chr13:75309951:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1108:46603:6171

NO_LDAS

0.0013

1.8323

1.8062

"[""INTERCHROMOSOMAL[chr11--chr13]""]"

chr11:34090678-chr13:75309951

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CAPRIN1--AC026341.3

0.33

0.0

INCL_NON_REF_SPLICE

CAPRIN1^ENSG00000135387.21

chr11:34090678:+

AC026341.3^ENSG00000288074.1

chr3:115438144:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1108:46603:6171

NO_LDAS

0.0013

1.8323

1.8062

"[""INTERCHROMOSOMAL[chr11--chr3]""]"

chr11:34090678-chr3:115438144

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CAPN1--ZFHX2

1.0

0.0

INCL_NON_REF_SPLICE

CAPN1^ENSG00000014216.16

chr11:65206002:+

ZFHX2^ENSG00000136367.14

chr14:23527687:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2142:48796:29585

NO_LDAS

0.0039

1.7819

1.5058

"[""INTERCHROMOSOMAL[chr11--chr14]""]"

chr11:65206002-chr14:23527687

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

CAMSAP2--MFSD14A

1.0

0.0

ONLY_REF_SPLICE

CAMSAP2^ENSG00000118200.14

chr1:200761098:+

MFSD14A^ENSG00000156875.14

chr1:100049909:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1131:51465:29641

YES_LDAS

0.0039

1.7968

1.9656

"[""INTRACHROMOSOMAL[chr1:100.66Mb]""]"

chr1:200761098-chr1:100049909

False

Read

count

too

low:

FAIL

CA14--NARF

1.0

0.0

INCL_NON_REF_SPLICE

CA14^ENSG00000118298.12

chr1:150258078:+

NARF^ENSG00000141562.18

chr17:82478800:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2395:28813:5680

NO_LDAS

0.0039

1.7056

1.8892

"[""INTERCHROMOSOMAL[chr1--chr17]""]"

chr1:150258078-chr17:82478800

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

C4orf19--B3GNTL1

1.0

0.0

INCL_NON_REF_SPLICE

C4orf19^ENSG00000154274.15

chr4:37454028:+

B3GNTL1^ENSG00000175711.8

chr17:82960393:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1116:46255:11173

NO_LDAS

0.0039

0.9183

1.5628

"[""INTERCHROMOSOMAL[chr4--chr17]""]"

chr4:37454028-chr17:82960393

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

C3--EXOC5

1.0

0.0

INCL_NON_REF_SPLICE

C3^ENSG00000125730.17

chr19:6680158:-

EXOC5^ENSG00000070367.16

chr14:57205036:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1434:42000:4979

NO_LDAS

0.0039

1.9329

1.9656

"[""INTERCHROMOSOMAL[chr19--chr14]""]"

chr19:6680158-chr14:57205036

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

C19orf71--HACD3

1.0

0.0

ONLY_REF_SPLICE

C19orf71^ENSG00000183397.5

chr19:3539260:+

HACD3^ENSG00000074696.13

chr15:65535721:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1131:51571:2695

NO_LDAS

0.0039

1.9329

1.8062

"[""INTERCHROMOSOMAL[chr19--chr15]""]"

chr19:3539260-chr15:65535721

False

Read

count

too

low:

FAIL

BTG3--C14orf28

0.25

0.0

INCL_NON_REF_SPLICE

BTG3^ENSG00000154640.15

chr21:17612699:-

C14orf28^ENSG00000179476.8

chr14:44897514:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1198:19647:16091

NO_LDAS

0.001

1.231

"[""INTERCHROMOSOMAL[chr21--chr14]""]"

chr21:17612699-chr14:44897514

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

BSPRY--SAMD15

1.0

0.0

INCL_NON_REF_SPLICE

BSPRY^ENSG00000119411.11

chr9:113360549:+

SAMD15^ENSG00000100583.4

chr14:77378232:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2457:13863:4643

NO_LDAS

0.0039

1.9656

1.8892

"[""INTERCHROMOSOMAL[chr9--chr14]""]"

chr9:113360549-chr14:77378232

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

BPIFA2--ST13P15

0.25

0.0

INCL_NON_REF_SPLICE

BPIFA2^ENSG00000131050.11

chr20:33174178:+

ST13P15^ENSG00000243759.1

chr3:143517382:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2260:3759:20603

NO_LDAS

0.001

1.9656

1.7819

"[""INTERCHROMOSOMAL[chr20--chr3]""]"

chr20:33174178-chr3:143517382

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

BORCS8--COPA

1.0

0.0

ONLY_REF_SPLICE

BORCS8^ENSG00000254901.8

chr19:19180686:-

COPA^ENSG00000122218.16

chr1:160291496:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1166:21274:15012

YES_LDAS

0.0039

1.5546

1.9656

"[""INTERCHROMOSOMAL[chr19--chr1]""]"

chr19:19180686-chr1:160291496

False

Read

count

too

low:

FAIL

BCORL1--ARF1

1.0

0.0

INCL_NON_REF_SPLICE

BCORL1^ENSG00000085185.16

chrX:130016213:+

ARF1^ENSG00000143761.16

chr1:228098091:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2379:47097:7530

NO_LDAS

0.0039

1.6895

1.9656

"[""INTERCHROMOSOMAL[chrX--chr1]""]"

chrX:130016213-chr1:228098091

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

BANP--MEIS2

1.0

0.0

INCL_NON_REF_SPLICE

BANP^ENSG00000172530.20

chr16:87950646:+

MEIS2^ENSG00000134138.20

chr15:37098020:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1129:10271:11537

YES_LDAS

0.0039

1.9086

"[""INTERCHROMOSOMAL[chr16--chr15]""]"

chr16:87950646-chr15:37098020

False

Read

count

too

low:

FAIL

BAIAP2--STAT6

1.0

0.0

INCL_NON_REF_SPLICE

BAIAP2^ENSG00000175866.15

chr17:81100040:+

STAT6^ENSG00000166888.12

chr12:57105317:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1489:32664:5820

NO_LDAS

0.0039

1.8892

1.7232

"[""INTERCHROMOSOMAL[chr17--chr12]""]"

chr17:81100040-chr12:57105317

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

BABAM2--LTBP1

1.0

0.0

ONLY_REF_SPLICE

BABAM2^ENSG00000158019.21

chr2:28045799:+

LTBP1^ENSG00000049323.16

chr2:33273656:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1127:49427:22046

YES_LDAS

0.0039

1.8256

1.6402

"[""INTRACHROMOSOMAL[chr2:4.61Mb]""]"

chr2:28045799-chr2:33273656

False

Read

count

too

low:

FAIL

ATP9B--HHAT

1.0

0.0

INCL_NON_REF_SPLICE

ATP9B^ENSG00000166377.20

chr18:79374034:+

HHAT^ENSG00000054392.13

chr1:210404506:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1148:4301:5596

NO_LDAS

0.0039

1.8892

1.9086

"[""INTERCHROMOSOMAL[chr18--chr1]""]"

chr18:79374034-chr1:210404506

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ATP5PD--EWSAT1

1.0

0.0

INCL_NON_REF_SPLICE

ATP5PD^ENSG00000167863.12

chr17:75040088:-

EWSAT1^ENSG00000212766.9

chr15:69094827:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1341:5992:9197

NO_LDAS

0.0039

1.2419

1.9656

"[""INTERCHROMOSOMAL[chr17--chr15]""]"

chr17:75040088-chr15:69094827

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ATP13A1--LRRC32

1.0

0.0

INCL_NON_REF_SPLICE

ATP13A1^ENSG00000105726.17

chr19:19647599:-

LRRC32^ENSG00000137507.11

chr11:76660023:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1413:29194:10262

NO_LDAS

0.0039

1.7465

"[""INTERCHROMOSOMAL[chr19--chr11]""]"

chr19:19647599-chr11:76660023

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ATP11B--AL450326.2

1.0

0.0

INCL_NON_REF_SPLICE

ATP11B^ENSG00000058063.16

chr3:182880981:+

AL450326.2^ENSG00000236114.1

chr10:43523876:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2350:4899:9351

NO_LDAS

0.0039

1.9899

1.6895

"[""INTERCHROMOSOMAL[chr3--chr10]""]"

chr3:182880981-chr10:43523876

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ATG16L2--PLPP5

1.0

0.0

ONLY_REF_SPLICE

ATG16L2^ENSG00000168010.11

chr11:72817855:+

PLPP5^ENSG00000147535.17

chr8:38266311:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1118:33773:20827

NO_LDAS

0.0039

1.6895

1.7465

"[""INTERCHROMOSOMAL[chr11--chr8]""]"

chr11:72817855-chr8:38266311

False

Read

count

too

low:

FAIL

ATG13--SARS1

1.0

0.0

INCL_NON_REF_SPLICE

ATG13^ENSG00000175224.16

chr11:46630100:+

SARS1^ENSG00000031698.13

chr1:109223982:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1325:50842:3284

YES_LDAS

0.0039

1.9656

"[""INTERCHROMOSOMAL[chr11--chr1]""]"

chr11:46630100-chr1:109223982

True

pair|recurrent

breakpoints

Blacklisted

FAIL

ATF2--SIN3B

1.0

0.0

INCL_NON_REF_SPLICE

ATF2^ENSG00000115966.17

chr2:175114692:-

SIN3B^ENSG00000127511.10

chr19:16880114:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1439:12900:20631

NO_LDAS

0.0039

1.9329

1.9656

"[""INTERCHROMOSOMAL[chr2--chr19]""]"

chr2:175114692-chr19:16880114

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ASAP2--C14orf28

0.25

0.0

INCL_NON_REF_SPLICE

ASAP2^ENSG00000151693.11

chr2:9207018:+

C14orf28^ENSG00000179476.8

chr14:44897514:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1198:19647:16091

NO_LDAS

0.001

1.231

"[""INTERCHROMOSOMAL[chr2--chr14]""]"

chr2:9207018-chr14:44897514

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ARRB1--PPP1R9B

1.0

0.0

INCL_NON_REF_SPLICE

ARRB1^ENSG00000137486.17

chr11:75265261:-

PPP1R9B^ENSG00000108819.11

chr17:50139491:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2129:16274:9828

NO_LDAS

0.0039

1.1589

1.9086

"[""INTERCHROMOSOMAL[chr11--chr17]""]"

chr11:75265261-chr17:50139491

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ARRB1--BCL2L2-PABPN1

0.33

0.0

INCL_NON_REF_SPLICE

ARRB1^ENSG00000137486.17

chr11:75265261:-

BCL2L2-PABPN1^ENSG00000258643.6

chr14:23322250:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1151:4778:26881

NO_LDAS

0.0013

1.1589

1.5628

"[""INTERCHROMOSOMAL[chr11--chr14]""]"

chr11:75265261-chr14:23322250

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ARMC4--CHTF8

1.0

0.0

ONLY_REF_SPLICE

ARMC4^ENSG00000169126.16

chr10:27853242:-

CHTF8^ENSG00000168802.14

chr16:69121493:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1119:32891:29025

NO_LDAS

0.0039

1.9329

1.6402

"[""INTERCHROMOSOMAL[chr10--chr16]""]"

chr10:27853242-chr16:69121493

True

pair|recurrent

breakpoints

Blacklisted

FAIL

ARL8B--LRIG1

1.0

0.0

ONLY_REF_SPLICE

ARL8B^ENSG00000134108.14

chr3:5122588:+

LRIG1^ENSG00000144749.14

chr3:66462509:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2145:32147:28520

YES_LDAS

0.0039

1.9899

1.8295

"[""INTRACHROMOSOMAL[chr3:61.20Mb]""]"

chr3:5122588-chr3:66462509

False

Read

count

too

low:

FAIL

ARHGEF3--FLNB

1.0

0.0

ONLY_REF_SPLICE

ARHGEF3^ENSG00000163947.12

chr3:57035088:-

FLNB^ENSG00000136068.15

chr3:58077046:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2409:45988:29039

YES_LDAS

0.0039

1.1589

1.9219

"[""INTRACHROMOSOMAL[chr3:0.93Mb]""]"

chr3:57035088-chr3:58077046

False

Read

count

too

low:

FAIL

ARHGAP8--MTSS2

1.0

0.0

INCL_NON_REF_SPLICE

ARHGAP8^ENSG00000241484.10

chr22:44825593:+

MTSS2^ENSG00000132613.15

chr16:70685820:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1491:51360:21332

NO_LDAS

0.0039

1.9899

0.9183

"[""INTERCHROMOSOMAL[chr22--chr16]""]"

chr22:44825593-chr16:70685820

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ARHGAP29--XRN2

1.0

0.0

INCL_NON_REF_SPLICE

ARHGAP29^ENSG00000137962.13

chr1:94209296:-

XRN2^ENSG00000088930.8

chr20:21303431:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1179:38214:4391

NO_LDAS

0.0039

1.9656

1.8295

"[""INTERCHROMOSOMAL[chr1--chr20]""]"

chr1:94209296-chr20:21303431

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ARHGAP26--NDFIP1

1.0

0.0

ONLY_REF_SPLICE

ARHGAP26^ENSG00000145819.18

chr5:142932125:+

NDFIP1^ENSG00000131507.11

chr5:142131808:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2105:36564:23840

YES_LDAS

0.0039

1.8892

1.7465

"[""INTRACHROMOSOMAL[chr5:0.62Mb]""]"

chr5:142932125-chr5:142131808

False

Read

count

too

low:

FAIL

ARGLU1--RFX3

1.0

0.0

ONLY_REF_SPLICE

ARGLU1^ENSG00000134884.15

chr13:106559432:-

RFX3^ENSG00000080298.15

chr9:3330517:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2450:30973:11215

NO_LDAS

0.0039

1.6402

1.6895

"[""INTERCHROMOSOMAL[chr13--chr9]""]"

chr13:106559432-chr9:3330517

False

Read

count

too

low:

FAIL

ARFGEF3--SCML2

1.0

0.0

ONLY_REF_SPLICE

ARFGEF3^ENSG00000112379.9

chr6:138253984:+

SCML2^ENSG00000102098.19

chrX:18260291:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1453:7318:25788

NO_LDAS

0.0039

1.9656

1.9086

"[""INTERCHROMOSOMAL[chr6--chrX]""]"

chr6:138253984-chrX:18260291

False

Read

count

too

low:

FAIL

ARFGEF1--PCM1

1.0

0.0

ONLY_REF_SPLICE

ARFGEF1^ENSG00000066777.9

chr8:67343164:-

PCM1^ENSG00000078674.18

chr8:17960014:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2284:15441:27834

NO_LDAS

0.0039

1.7232

1.9329

"[""INTRACHROMOSOMAL[chr8:49.15Mb]""]"

chr8:67343164-chr8:17960014

False

Read

count

too

low:

FAIL

APLP2--CERS3

1.0

0.0

INCL_NON_REF_SPLICE

APLP2^ENSG00000084234.18

chr11:130121799:+

CERS3^ENSG00000154227.14

chr15:100402823:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1284:49127:6535

NO_LDAS

0.0039

1.7819

0.9968

"[""INTERCHROMOSOMAL[chr11--chr15]""]"

chr11:130121799-chr15:100402823

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

AP001033.1--TMEM94

1.0

0.0

INCL_NON_REF_SPLICE

AP001033.1^ENSG00000264964.2

chr18:9310978:-

TMEM94^ENSG00000177728.17

chr17:75490099:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1115:33489:26306

YES_LDAS

0.0039

0.9056

1.2867

"[""INTERCHROMOSOMAL[chr18--chr17]""]"

chr18:9310978-chr17:75490099

False

Read

count

too

low:

FAIL

ANXA7--SMG1P1

0.33

0.0

ONLY_REF_SPLICE

ANXA7^ENSG00000138279.16

chr10:73377445:-

SMG1P1^ENSG00000237296.9

chr16:22451620:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2257:15392:11075

YES_LDAS

0.0013

1.9329

1.9656

"[""INTERCHROMOSOMAL[chr10--chr16]""]"

chr10:73377445-chr16:22451620

False

Read

count

too

low:

FAIL

ANXA7--LINC02574

1.0

0.0

ONLY_REF_SPLICE

ANXA7^ENSG00000138279.16

chr10:73400803:-

LINC02574^ENSG00000233975.2

chr1:27662180:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1242:32931:1042

NO_LDAS

0.0039

1.8323

1.8892

"[""INTERCHROMOSOMAL[chr10--chr1]""]"

chr10:73400803-chr1:27662180

False

Read

count

too

low:

FAIL

ANP32B--HMGB1P48

1.0

0.0

INCL_NON_REF_SPLICE

ANP32B^ENSG00000136938.9

chr9:98005153:+

HMGB1P48^ENSG00000234379.1

chr1:45532093:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2188:42000:21038

NO_LDAS

0.0039

1.2729

1.2867

"[""INTERCHROMOSOMAL[chr9--chr1]""]"

chr9:98005153-chr1:45532093

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ANKS3--BRAF

1.0

0.0

INCL_NON_REF_SPLICE

ANKS3^ENSG00000168096.15

chr16:4729592:-

BRAF^ENSG00000157764.14

chr7:140808995:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2329:15538:15951

YES_LDAS

0.0039

1.8295

1.9656

"[""INTERCHROMOSOMAL[chr16--chr7]""]"

chr16:4729592-chr7:140808995

False

Read

count

too

low:

FAIL

ANKRD30A--ATOH7

1.0

0.0

INCL_NON_REF_SPLICE

ANKRD30A^ENSG00000148513.18

chr10:37125731:+

ATOH7^ENSG00000179774.9

chr10:68231657:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2237:35601:21444

NO_LDAS

0.0039

0.9056

0.9968

"[""INTRACHROMOSOMAL[chr10:30.85Mb]""]"

chr10:37125731-chr10:68231657

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ANKRD24--RPL13P12

0.5

0.0

INCL_NON_REF_SPLICE

ANKRD24^ENSG00000089847.12

chr19:4218094:+

RPL13P12^ENSG00000215030.5

chr17:17383667:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2114:51134:2303

NO_LDAS

0.0019

1.9086

1.8892

"[""INTERCHROMOSOMAL[chr19--chr17]""]"

chr19:4218094-chr17:17383667

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ANGPTL2--ZNF761

1.0

0.0

ONLY_REF_SPLICE

ANGPTL2^ENSG00000136859.10

chr9:127107915:-

ZNF761^ENSG00000160336.16

chr19:53445001:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2345:2391:28884

YES_LDAS

0.0039

1.7819

1.8892

"[""INTERCHROMOSOMAL[chr9--chr19]""]"

chr9:127107915-chr19:53445001

False

Read

count

too

low:

FAIL

ANAPC7--ARPC3

1.0

0.0

ONLY_REF_SPLICE

ANAPC7^ENSG00000196510.13

chr12:110403527:-

ARPC3^ENSG00000111229.16

chr12:110435217:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1166:35188:27007

YES_LDAS

0.0039

1.7968

1.6895

"[""DEEPEST2019"",""INTRACHROMOSOMAL[chr12:0.03Mb]"",""LOCAL_REARRANGEMENT:-:[31093]""]"

chr12:110403527-chr12:110435217

False

Read

count

too

low:

FAIL

ANAPC16--RPS24

1.0

0.0

INCL_NON_REF_SPLICE

ANAPC16^ENSG00000166295.9

chr10:72233693:+

RPS24^ENSG00000138326.21

chr10:78040204:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1289:7391:17226

NO_LDAS

0.0039

1.7968

1.7465

"[""INTRACHROMOSOMAL[chr10:5.80Mb]""]"

chr10:72233693-chr10:78040204

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ALPK3--COPE

1.0

0.0

INCL_NON_REF_SPLICE

ALPK3^ENSG00000136383.7

chr15:84864525:+

COPE^ENSG00000105669.14

chr19:18899947:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1244:29906:4293

NO_LDAS

0.0039

1.7819

1.8892

"[""INTERCHROMOSOMAL[chr15--chr19]""]"

chr15:84864525-chr19:18899947

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

ALDOC--ASIC3

1.0

0.0

INCL_NON_REF_SPLICE

ALDOC^ENSG00000109107.14

chr17:28575479:-

ASIC3^ENSG00000213199.8

chr7:151051861:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1237:18790:3116

NO_LDAS

0.0039

1.9329

1.7056

"[""INTERCHROMOSOMAL[chr17--chr7]""]"

chr17:28575479-chr7:151051861

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ALDH1A1--SBDS

1.0

0.0

INCL_NON_REF_SPLICE

ALDH1A1^ENSG00000165092.13

chr9:72940148:-

SBDS^ENSG00000126524.10

chr7:66988468:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1451:7512:16371

NO_LDAS

0.0039

1.2729

1.7465

"[""INTERCHROMOSOMAL[chr9--chr7]""]"

chr9:72940148-chr7:66988468

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ALAD--NRDE2

1.0

0.0

INCL_NON_REF_SPLICE

ALAD^ENSG00000148218.16

chr9:113387069:-

NRDE2^ENSG00000119720.18

chr14:90276862:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1147:12787:10542

YES_LDAS

0.0039

1.8062

1.9086

"[""INTERCHROMOSOMAL[chr9--chr14]""]"

chr9:113387069-chr14:90276862

False

Read

count

too

low:

FAIL

AL772363.1--TCF3

1.0

0.0

INCL_NON_REF_SPLICE

AL772363.1^ENSG00000203987.3

chr9:137875621:-

TCF3^ENSG00000071564.17

chr19:1619234:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1293:2934:15587

NO_LDAS

0.0039

1.9329

1.8892

"[""INTERCHROMOSOMAL[chr9--chr19]""]"

chr9:137875621-chr19:1619234

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AL445250.1--NOSIP

0.5

0.0

ONLY_REF_SPLICE

AL445250.1^ENSG00000225096.3

chr6:57961742:+

NOSIP^ENSG00000142546.14

chr19:49560692:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1224:36847:6283

YES_LDAS

0.0019

1.9329

1.8295

"[""INTERCHROMOSOMAL[chr6--chr19]""]"

chr6:57961742-chr19:49560692

True

pair|recurrent

breakpoints

Blacklisted

FAIL

AL359265.2--RPL13P12

0.5

0.0

INCL_NON_REF_SPLICE

AL359265.2^ENSG00000232463.1

chr1:176231293:-

RPL13P12^ENSG00000215030.5

chr17:17383470:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2189:43456:20365

NO_LDAS

0.0019

1.9086

1.8062

"[""INTERCHROMOSOMAL[chr1--chr17]""]"

chr1:176231293-chr17:17383470

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AL356489.3--CYTH2

1.0

0.0

INCL_NON_REF_SPLICE

AL356489.3^ENSG00000287063.1

chr9:33707036:+

CYTH2^ENSG00000105443.15

chr19:48470478:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2298:30173:29697

NO_LDAS

0.0039

1.5546

1.8295

"[""INTERCHROMOSOMAL[chr9--chr19]""]"

chr9:33707036-chr19:48470478

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AL355916.1--EBF4

1.0

0.0

INCL_NON_REF_SPLICE

AL355916.1^ENSG00000232774.8

chr14:61654186:+

EBF4^ENSG00000088881.21

chr20:2755813:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1188:2335:26741

NO_LDAS

0.0039

1.3753

1.8295

"[""INTERCHROMOSOMAL[chr14--chr20]""]"

chr14:61654186-chr20:2755813

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AL161757.5--PHC3

1.0

0.0

ONLY_REF_SPLICE

AL161757.5^ENSG00000259133.5

chr14:56725890:-

PHC3^ENSG00000173889.16

chr3:170145521:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1253:8419:6899

NO_LDAS

0.0039

1.9329

1.7819

"[""INTERCHROMOSOMAL[chr14--chr3]""]"

chr14:56725890-chr3:170145521

False

Read

count

too

low:

FAIL

AL160391.1--PGGHG

1.0

0.0

INCL_NON_REF_SPLICE

AL160391.1^ENSG00000288330.1

chr13:70139382:-

PGGHG^ENSG00000142102.16

chr11:291447:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2108:35876:22509

NO_LDAS

0.0039

1.8256

1.9329

"[""INTERCHROMOSOMAL[chr13--chr11]""]"

chr13:70139382-chr11:291447

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AL160236.1--HMGN2P31

1.0

0.0

INCL_NON_REF_SPLICE

AL160236.1^ENSG00000258656.1

chr14:60972314:-

HMGN2P31^ENSG00000214195.4

chr9:5311607:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2356:30197:18641

YES_LDAS

0.0039

0.9968

0.971

"[""INTERCHROMOSOMAL[chr14--chr9]""]"

chr14:60972314-chr9:5311607

False

Read

count

too

low:

FAIL

AL139383.1--STARD13

1.0

0.0

ONLY_REF_SPLICE

AL139383.1^ENSG00000230490.3

chr13:33439691:-

STARD13^ENSG00000133121.21

chr13:33167622:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2220:10384:24401

YES_LDAS

0.0039

1.6895

1.6402

"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr13:0.00Mb]"",""NEIGHBORS[4576]""]"

chr13:33439691-chr13:33167622

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

AL139094.1--TMC4

1.0

0.0

INCL_NON_REF_SPLICE

AL139094.1^ENSG00000220685.3

chr6:5066922:-

TMC4^ENSG00000167608.12

chr19:54171991:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1313:37615:9828

NO_LDAS

0.0039

1.4566

1.231

"[""INTERCHROMOSOMAL[chr6--chr19]""]"

chr6:5066922-chr19:54171991

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

AL033384.1--MLIP

1.0

0.0

ONLY_REF_SPLICE

AL033384.1^ENSG00000236740.6

chr6:53930277:+

MLIP^ENSG00000146147.15

chr6:54121447:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1131:4843:28030

NO_LDAS

0.0039

1.9086

1.5219

"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr6:0.02Mb]"",""NEIGHBORS[21249]""]"

chr6:53930277-chr6:54121447

True

pair|recurrent

breakpoints

Blacklisted

FAIL

AIFM1--PDE6A

0.5

0.0

INCL_NON_REF_SPLICE

AIFM1^ENSG00000156709.15

chrX:130136041:-

PDE6A^ENSG00000132915.11

chr5:149867226:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1295:4835:4111

NO_LDAS

0.0019

1.9329

1.8256

"[""INTERCHROMOSOMAL[chrX--chr5]""]"

chrX:130136041-chr5:149867226

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AHSA2P--UBTF

1.0

0.0

INCL_NON_REF_SPLICE

AHSA2P^ENSG00000173209.23

chr2:61178192:+

UBTF^ENSG00000108312.15

chr17:44218290:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2425:22827:15825

NO_LDAS

0.0039

1.4566

1.8256

"[""INTERCHROMOSOMAL[chr2--chr17]""]"

chr2:61178192-chr17:44218290

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AHCY--SLCO2B1

1.0

0.0

INCL_NON_REF_SPLICE

AHCY^ENSG00000101444.13

chr20:34294081:-

SLCO2B1^ENSG00000137491.15

chr11:75202061:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1164:24000:13065

NO_LDAS

0.0039

1.8892

"[""INTERCHROMOSOMAL[chr20--chr11]""]"

chr20:34294081-chr11:75202061

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ADRA2C--GMPPB

1.0

0.0

INCL_NON_REF_SPLICE

ADRA2C^ENSG00000184160.8

chr4:3766822:+

GMPPB^ENSG00000173540.14

chr3:49722147:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2169:24558:4895

NO_LDAS

0.0039

1.8295

1.7465

"[""INTERCHROMOSOMAL[chr4--chr3]""]"

chr4:3766822-chr3:49722147

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ADPRS--PAGE4

1.0

0.0

INCL_NON_REF_SPLICE

ADPRS^ENSG00000116863.11

chr1:36092098:+

PAGE4^ENSG00000101951.17

chrX:49831093:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2231:11549:6269

NO_LDAS

0.0039

1.7968

"[""INTERCHROMOSOMAL[chr1--chrX]""]"

chr1:36092098-chrX:49831093

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ADGRL4--WWC1

1.0

0.0

INCL_NON_REF_SPLICE

ADGRL4^ENSG00000162618.15

chr1:79006777:-

WWC1^ENSG00000113645.15

chr5:168464711:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1330:5587:23209

NO_LDAS

0.0039

1.7465

1.2366

"[""INTERCHROMOSOMAL[chr1--chr5]""]"

chr1:79006777-chr5:168464711

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ADD1--PRICKLE1

0.5

0.0

INCL_NON_REF_SPLICE

ADD1^ENSG00000087274.17

chr4:2915012:+

PRICKLE1^ENSG00000139174.12

chr12:42460639:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1415:18677:12112

NO_LDAS

0.0019

1.7465

1.9656

"[""INTERCHROMOSOMAL[chr4--chr12]""]"

chr4:2915012-chr12:42460639

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ADAP1--AC091564.3

1.0

0.0

INCL_NON_REF_SPLICE

ADAP1^ENSG00000105963.15

chr7:901096:-

AC091564.3^ENSG00000254641.1

chr11:6608783:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1133:26532:25830

NO_LDAS

0.0039

1.6402

1.9656

"[""INTERCHROMOSOMAL[chr7--chr11]""]"

chr7:901096-chr11:6608783

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ADAMTSL4--LDLRAD4

1.0

0.0

INCL_NON_REF_SPLICE

ADAMTSL4^ENSG00000143382.16

chr1:150559548:+

LDLRAD4^ENSG00000168675.19

chr18:13651271:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1233:14624:23364

NO_LDAS

0.0039

1.7232

1.3996

"[""INTERCHROMOSOMAL[chr1--chr18]""]"

chr1:150559548-chr18:13651271

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AD000864.1--PILRB

1.0

0.0

INCL_NON_REF_SPLICE

AD000864.1^ENSG00000280194.1

chr19:35902969:-

PILRB^ENSG00000121716.20

chr7:100367349:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1288:51328:15194

NO_LDAS

0.0039

1.4295

1.8062

"[""INTERCHROMOSOMAL[chr19--chr7]""]"

chr19:35902969-chr7:100367349

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ACTN4--ZBED4

1.0

0.0

ONLY_REF_SPLICE

ACTN4^ENSG00000130402.13

chr19:38647907:+

ZBED4^ENSG00000100426.7

chr22:49883334:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1165:25424:4489

YES_LDAS

0.0039

1.5656

1.9086

"[""INTERCHROMOSOMAL[chr19--chr22]""]"

chr19:38647907-chr22:49883334

False

Read

count

too

low:

FAIL

ACTG1--ARHGEF34P

0.33

0.0

INCL_NON_REF_SPLICE

ACTG1^ENSG00000184009.13

chr17:81512806:-

ARHGEF34P^ENSG00000204959.4

chr7:144286033:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1236:45568:24415

NO_LDAS

0.0013

1.1589

1.7968

"[""INTERCHROMOSOMAL[chr17--chr7]""]"

chr17:81512806-chr7:144286033

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ACTA2--ACTG1

1.0

0.0

ONLY_REF_SPLICE

ACTA2^ENSG00000107796.13

chr10:88938061:-

ACTG1^ENSG00000184009.13

chr17:81510833:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1333:21994:4573

YES_LDAS

0.0039

1.8295

1.6402

"[""GTEx_recurrent_StarF2019"",""INTERCHROMOSOMAL[chr10--chr17]""]"

chr10:88938061-chr17:81510833

True

pair|recurrent

breakpoints

Blacklisted

FAIL

ACIN1--KLK1

1.0

0.0

INCL_NON_REF_SPLICE

ACIN1^ENSG00000100813.14

chr14:23061524:-

KLK1^ENSG00000167748.11

chr19:50822066:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1249:27932:21976

NO_LDAS

0.0039

0.9056

1.5628

"[""INTERCHROMOSOMAL[chr14--chr19]""]"

chr14:23061524-chr19:50822066

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ACADVL--SIRT5

1.0

0.0

INCL_NON_REF_SPLICE

ACADVL^ENSG00000072778.20

chr17:7223730:+

SIRT5^ENSG00000124523.17

chr6:13574674:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1290:20149:1406

NO_LDAS

0.0039

1.9656

1.7056

"[""INTERCHROMOSOMAL[chr17--chr6]""]"

chr17:7223730-chr6:13574674

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC245100.7--SEC22B3P

1.0

0.0

INCL_NON_REF_SPLICE

AC245100.7^ENSG00000285062.1

chr1:148459602:-

SEC22B3P^ENSG00000275140.1

chr1:148784591:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1119:18992:6213

YES_LDAS

0.0039

1.9329

1.8256

"[""INTRACHROMOSOMAL[chr1:0.31Mb]""]"

chr1:148459602-chr1:148784591

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

AC242842.1--PITPNC1

0.33

0.0

ONLY_REF_SPLICE

AC242842.1^ENSG00000275557.1

chr1:149611848:+

PITPNC1^ENSG00000154217.15

chr17:67532802:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2269:37842:6745

NO_LDAS

0.0013

1.9656

1.8295

"[""INTERCHROMOSOMAL[chr1--chr17]""]"

chr1:149611848-chr17:67532802

False

Read

count

too

low:

FAIL

AC211476.6--GSTK1

1.0

0.0

INCL_NON_REF_SPLICE

AC211476.6^ENSG00000285886.1

chr7:72954902:+

GSTK1^ENSG00000197448.14

chr7:143268791:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1279:34703:16470

NO_LDAS

0.0039

1.6895

1.7968

"[""INTRACHROMOSOMAL[chr7:70.29Mb]""]"

chr7:72954902-chr7:143268791

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC211476.4--DTX2

0.09

0.0

ONLY_REF_SPLICE

AC211476.4^ENSG00000277125.1

chr7:73069531:+

DTX2^ENSG00000091073.19

chr7:76463545:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2390:32680:22523

YES_LDAS

0.0003

1.4566

1.8323

"[""INTRACHROMOSOMAL[chr7:3.38Mb]""]"

chr7:73069531-chr7:76463545

True

pair|recurrent

breakpoints

Blacklisted

FAIL

AC138969.1--SRCAP

0.14

0.0

ONLY_REF_SPLICE

AC138969.1^ENSG00000183889.12

chr16:16331980:+

SRCAP^ENSG00000080603.17

chr16:30728966:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2219:50381:21906

YES_LDAS

0.0005

1.9329

"[""INTRACHROMOSOMAL[chr16:14.35Mb]""]"

chr16:16331980-chr16:30728966

False

Read

count

too

low:

FAIL

AC138409.2--NAIP

0.06

0.0

ONLY_REF_SPLICE

AC138409.2^ENSG00000215158.9

chr5:34175822:-

NAIP^ENSG00000249437.8

chr5:71003857:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2383:42469:14452

YES_LDAS

0.0002

1.9329

1.8295

"[""INTRACHROMOSOMAL[chr5:36.72Mb]""]"

chr5:34175822-chr5:71003857

False

Read

count

too

low:

FAIL

AC134407.3--FBXO9

1.0

0.0

INCL_NON_REF_SPLICE

AC134407.3^ENSG00000279880.1

chr17:67975807:+

FBXO9^ENSG00000112146.17

chr6:53100325:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2192:32664:1224

NO_LDAS

0.0039

1.7968

1.8295

"[""INTERCHROMOSOMAL[chr17--chr6]""]"

chr17:67975807-chr6:53100325

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC116345.4--UXT

1.0

0.0

INCL_NON_REF_SPLICE

AC116345.4^ENSG00000287090.1

chr5:73195972:-

UXT^ENSG00000126756.12

chrX:47657285:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1247:39913:29473

NO_LDAS

0.0039

1.9899

1.8256

"[""INTERCHROMOSOMAL[chr5--chrX]""]"

chr5:73195972-chrX:47657285

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC106791.1--GAPVD1

1.0

0.0

INCL_NON_REF_SPLICE

AC106791.1^ENSG00000250159.7

chr5:137811177:-

GAPVD1^ENSG00000165219.22

chr9:125298890:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1486:4956:19566

YES_LDAS

0.0039

1.8256

1.9656

"[""INTERCHROMOSOMAL[chr5--chr9]""]"

chr5:137811177-chr9:125298890

False

Read

count

too

low:

FAIL

AC104162.1--THOC7

1.0

0.0

ONLY_REF_SPLICE

AC104162.1^ENSG00000224479.6

chr3:63826824:-

THOC7^ENSG00000163634.12

chr3:63839773:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1207:21265:18726

NO_LDAS

0.0039

1.9329

1.8892

"[""INTRACHROMOSOMAL[chr3:0.01Mb]"",""LOCAL_REARRANGEMENT:-:[6425]""]"

chr3:63826824-chr3:63839773

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

AC103564.1--SRSF2

1.0

0.0

INCL_NON_REF_SPLICE

AC103564.1^ENSG00000229203.1

chr2:131829909:-

SRSF2^ENSG00000161547.17

chr17:76736804:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1388:34371:3004

NO_LDAS

0.0039

1.4716

1.8062

"[""INTERCHROMOSOMAL[chr2--chr17]""]"

chr2:131829909-chr17:76736804

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC097500.1--LINC01473

1.0

0.0

INCL_NON_REF_SPLICE

AC097500.1^ENSG00000287129.1

chr2:185950644:-

LINC01473^ENSG00000237877.7

chr2:186086370:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1420:15999:12770

YES_LDAS

0.0039

1.9899

1.8323

"[""INTRACHROMOSOMAL[chr2:0.08Mb]"",""LOCAL_REARRANGEMENT:-:[79713]""]"

chr2:185950644-chr2:186086370

True

pair|recurrent

breakpoints

Blacklisted

FAIL

AC092865.4--AC079804.3

1.0

0.0

ONLY_REF_SPLICE

AC092865.4^ENSG00000284687.1

chr12:8390270:-

AC079804.3^ENSG00000287860.1

chr7:6987410:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1106:1906:4307

YES_LDAS

0.0039

1.4566

1.7819

"[""INTERCHROMOSOMAL[chr12--chr7]""]"

chr12:8390270-chr7:6987410

False

Read

count

too

low:

FAIL

AC092745.5--STARD13

1.0

0.0

ONLY_REF_SPLICE

AC092745.5^ENSG00000286895.1

chr12:8251507:+

STARD13^ENSG00000133121.21

chr13:33167622:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1240:22439:27960

YES_LDAS

0.0039

1.5329

1.6402

"[""INTERCHROMOSOMAL[chr12--chr13]""]"

chr12:8251507-chr13:33167622

False

Read

count

too

low:

FAIL

AC090403.1--RN7SL515P

0.5

0.0

INCL_NON_REF_SPLICE

AC090403.1^ENSG00000264151.6

chr18:27392780:-

RN7SL515P^ENSG00000241406.3

chr13:41807912:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1241:39872:26825

NO_LDAS

0.0019

1.5058

1.8892

"[""INTERCHROMOSOMAL[chr18--chr13]""]"

chr18:27392780-chr13:41807912

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC084851.2--DDX23

1.0

0.0

INCL_NON_REF_SPLICE

AC084851.2^ENSG00000255452.1

chr11:49092468:+

DDX23^ENSG00000174243.10

chr12:48837654:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1196:37656:1266

NO_LDAS

0.0039

1.4566

1.9329

"[""INTERCHROMOSOMAL[chr11--chr12]""]"

chr11:49092468-chr12:48837654

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC073476.2--SZT2

1.0

0.0

INCL_NON_REF_SPLICE

AC073476.2^ENSG00000261096.1

chr2:231810826:+

SZT2^ENSG00000198198.17

chr1:43432517:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2440:42583:3634

NO_LDAS

0.0039

1.3996

1.7465

"[""INTERCHROMOSOMAL[chr2--chr1]""]"

chr2:231810826-chr1:43432517

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC034236.1--PLA2R1

0.5

0.0

INCL_NON_REF_SPLICE

AC034236.1^ENSG00000185641.6

chr5:116052187:-

PLA2R1^ENSG00000153246.13

chr2:160016709:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1441:29728:21668

NO_LDAS

0.0019

1.3383

1.9086

"[""INTERCHROMOSOMAL[chr5--chr2]""]"

chr5:116052187-chr2:160016709

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

AC034102.6--ARFGEF1

0.14

0.0

INCL_NON_REF_SPLICE

AC034102.6^ENSG00000258317.1

chr12:56129241:-

ARFGEF1^ENSG00000066777.9

chr8:67343233:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1216:31645:15405

NO_LDAS

0.0005

1.8295

1.9656

"[""INTERCHROMOSOMAL[chr12--chr8]""]"

chr12:56129241-chr8:67343233

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC021078.1--AL354751.1

0.2

0.0

INCL_NON_REF_SPLICE

AC021078.1^ENSG00000230551.4

chr5:149496830:-

AL354751.1^ENSG00000234537.1

chr9:92137375:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1140:50454:9337

NO_LDAS

0.0008

1.5329

1.585

"[""INTERCHROMOSOMAL[chr5--chr9]""]"

chr5:149496830-chr9:92137375

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC020741.1--ADGRA1

0.5

0.0

INCL_NON_REF_SPLICE

AC020741.1^ENSG00000205682.2

chr4:61428174:-

ADGRA1^ENSG00000197177.15

chr10:133129189:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1412:6129:19328

NO_LDAS

0.0019

1.7819

1.5546

"[""INTERCHROMOSOMAL[chr4--chr10]""]"

chr4:61428174-chr10:133129189

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

AC020741.1--AC010491.2

0.5

0.0

INCL_NON_REF_SPLICE

AC020741.1^ENSG00000205682.2

chr4:61428174:-

AC010491.2^ENSG00000286970.1

chr5:14732965:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1412:6129:19328

NO_LDAS

0.0019

1.7819

1.5546

"[""INTERCHROMOSOMAL[chr4--chr5]""]"

chr4:61428174-chr5:14732965

True

aih_curated_blacklist

score(3)

aih_curated_blacklist

score(3)

FAIL

AC016907.2--ALK

1.0

0.0

ONLY_REF_SPLICE

AC016907.2^ENSG00000233862.7

chr2:30119768:-

ALK^ENSG00000171094.18

chr2:29717697:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1178:4228:7964

YES_LDAS

0.0039

1.8062

1.9329

"[""CCLE_StarF2019"",""INTRACHROMOSOMAL[chr2:0.13Mb]""]"

chr2:30119768-chr2:29717697

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

AC015712.1--HMCN1

1.0

0.0

INCL_NON_REF_SPLICE

AC015712.1^ENSG00000232386.9

chr15:100850332:+

HMCN1^ENSG00000143341.12

chr1:185734841:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2414:4932:6269

NO_LDAS

0.0039

1.9656

1.9329

"[""INTERCHROMOSOMAL[chr15--chr1]""]"

chr15:100850332-chr1:185734841

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC009950.1--PILRB

1.0

0.0

INCL_NON_REF_SPLICE

AC009950.1^ENSG00000225963.8

chr2:230121756:+

PILRB^ENSG00000121716.20

chr7:100358242:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2114:5304:4895

NO_LDAS

0.0039

1.5058

1.371

"[""INTERCHROMOSOMAL[chr2--chr7]""]"

chr2:230121756-chr7:100358242

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC009237.3--OR7E102P

0.06

0.0

INCL_NON_REF_SPLICE

AC009237.3^ENSG00000229689.3

chr2:95527233:+

OR7E102P^ENSG00000168992.4

chr2:95546574:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2436:27357:21430

NO_LDAS

0.0002

1.7968

1.9086

"[""INTRACHROMOSOMAL[chr2:0.01Mb]"",""NEIGHBORS[14126]""]"

chr2:95527233-chr2:95546574

True

pair|recurrent

breakpoints

Blacklisted

FAIL

AC008691.1--ATP6V0A4

1.0

0.0

INCL_NON_REF_SPLICE

AC008691.1^ENSG00000249738.10

chr5:159424182:+

ATP6V0A4^ENSG00000105929.16

chr7:138768874:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2128:44403:12868

NO_LDAS

0.0039

1.9329

1.9086

"[""INTERCHROMOSOMAL[chr5--chr7]""]"

chr5:159424182-chr7:138768874

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC008038.1--CACNB3

0.25

0.0

INCL_NON_REF_SPLICE

AC008038.1^ENSG00000283041.1

chr7:133035453:-

CACNB3^ENSG00000167535.8

chr12:48824696:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1247:18741:21108

NO_LDAS

0.001

1.8295

1.9899

"[""INTERCHROMOSOMAL[chr7--chr12]""]"

chr7:133035453-chr12:48824696

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC008038.1--AC073587.1

0.25

0.0

INCL_NON_REF_SPLICE

AC008038.1^ENSG00000283041.1

chr7:133035453:-

AC073587.1^ENSG00000234522.1

chr10:120439353:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1247:18741:21108

NO_LDAS

0.001

1.8295

1.8892

"[""INTERCHROMOSOMAL[chr7--chr10]""]"

chr7:133035453-chr10:120439353

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

AC004980.3--UPK3BL1

0.12

0.0

INCL_NON_REF_SPLICE

AC004980.3^ENSG00000230305.2

chr7:76527852:+

UPK3BL1^ENSG00000267368.1

chr7:102640773:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1345:37340:14452

YES_LDAS

0.0005

1.9086

1.7465

"[""INTRACHROMOSOMAL[chr7:26.10Mb]""]"

chr7:76527852-chr7:102640773

False

Read

count

too

low:

FAIL

AC004980.2--AC004980.1

0.5

0.0

INCL_NON_REF_SPLICE

AC004980.2^ENSG00000214243.3

chr7:76650398:-

AC004980.1^ENSG00000205485.13

chr7:76551420:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1177:6250:7123

YES_LDAS

0.0019

1.9656

1.8323

"[""INTRACHROMOSOMAL[chr7:0.02Mb]"",""LOCAL_INVERSION:-:+:[22419]""]"

chr7:76650398-chr7:76551420

True

pair|recurrent

breakpoints

aih_curated_blacklist

score(3)

Blacklisted;

aih_curated_blacklist

score(3)

FAIL

AC004923.1--MSRA

0.07

0.0

ONLY_REF_SPLICE

AC004923.1^ENSG00000254610.3

chr11:67955482:-

MSRA^ENSG00000175806.15

chr8:10207833:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2210:16517:7249

YES_LDAS

0.0003

1.4566

1.7819

"[""INTERCHROMOSOMAL[chr11--chr8]""]"

chr11:67955482-chr8:10207833

False

Read

count

too

low:

FAIL

AC004076.1--ZNF772

1.0

0.0

INCL_NON_REF_SPLICE

AC004076.1^ENSG00000268163.1

chr19:57455653:-

ZNF772^ENSG00000197128.12

chr19:57467085:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1471:28263:2261

NO_LDAS

0.0039

1.9656

1.8062

"[""INTRACHROMOSOMAL[chr19:0.01Mb]"",""LOCAL_REARRANGEMENT:-:[10424]""]"

chr19:57455653-chr19:57467085

True

pair|recurrent

breakpoints

Blacklisted

FAIL

ABR--KRT17P1

0.25

0.0

INCL_NON_REF_SPLICE

ABR^ENSG00000159842.15

chr17:1050537:-

KRT17P1^ENSG00000131885.17

chr17:16842305:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1344:23862:17535

NO_LDAS

0.001

1.8892

1.9219

"[""INTRACHROMOSOMAL[chr17:15.61Mb]""]"

chr17:1050537-chr17:16842305

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ABR--DDX5

1.0

0.0

ONLY_REF_SPLICE

ABR^ENSG00000159842.15

chr17:1050050:-

DDX5^ENSG00000108654.16

chr17:64504842:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2113:34857:3648

NO_LDAS

0.0039

1.7465

1.8256

"[""INTRACHROMOSOMAL[chr17:63.27Mb]""]"

chr17:1050050-chr17:64504842

False

Read

count

too

low:

FAIL

ABI1--CDH7

1.0

0.0

ONLY_REF_SPLICE

ABI1^ENSG00000136754.18

chr10:26823138:-

CDH7^ENSG00000081138.14

chr18:65803115:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1131:36135:19286

YES_LDAS

0.0039

1.8062

1.8323

"[""INTERCHROMOSOMAL[chr10--chr18]""]"

chr10:26823138-chr18:65803115

False

Read

count

too

low:

FAIL

ABCD3--NDUFS7

1.0

0.0

INCL_NON_REF_SPLICE

ABCD3^ENSG00000117528.14

chr1:94418444:+

NDUFS7^ENSG00000115286.20

chr19:1395489:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2303:18458:19608

NO_LDAS

0.0039

0.9183

"[""INTERCHROMOSOMAL[chr1--chr19]""]"

chr1:94418444-chr19:1395489

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ABCB9--RUNX1T1

0.2

0.0

INCL_NON_REF_SPLICE

ABCB9^ENSG00000150967.18

chr12:122974617:-

RUNX1T1^ENSG00000079102.16

chr8:92103176:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1136:24898:9071

NO_LDAS

0.0008

1.2419

1.053

"[""INTERCHROMOSOMAL[chr12--chr8]""]"

chr12:122974617-chr8:92103176

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ABCB7--NIBAN1

1.0

0.0

INCL_NON_REF_SPLICE

ABCB7^ENSG00000131269.19

chrX:75052670:-

NIBAN1^ENSG00000135842.17

chr1:184793445:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1141:23725:19790

NO_LDAS

0.0039

1.8295

1.9329

"[""INTERCHROMOSOMAL[chrX--chr1]""]"

chrX:75052670-chr1:184793445

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ABCA2--SVEP1

1.0

0.0

INCL_NON_REF_SPLICE

ABCA2^ENSG00000107331.17

chr9:137024143:-

SVEP1^ENSG00000165124.18

chr9:110407601:-

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1390:32025:6871

NO_LDAS

0.0039

1.9656

1.7819

"[""INTRACHROMOSOMAL[chr9:26.43Mb]""]"

chr9:137024143-chr9:110407601

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

ABCA2--MRFAP1

1.0

0.0

INCL_NON_REF_SPLICE

ABCA2^ENSG00000107331.17

chr9:137022368:-

MRFAP1^ENSG00000179010.15

chr4:6641093:+

&ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1255:37033:17142

NO_LDAS

0.0039

1.6729

1.5546

"[""INTERCHROMOSOMAL[chr9--chr4]""]"

chr9:137022368-chr4:6641093

False

Excluded

SpliceType:

INCL_NON_REF_SPLICE

FAIL

846 rows