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FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/fusioninspector/FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv
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8.9 KB
Workflow Run
dev_rna_exp0008_exp0011-e7be3c7a_b
Published
May 28, 2026 5:53 PM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 5284 9 5284.00 8.98 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 104 2725 50.42 1.94 GT 1.8892 AG 1.7819 19.218 627 0
FGFR3--TACC3 9 9 9.00 0.02 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 21 2786 0.86 0.01 GA 1.8892 TA 1.5219 0.0328 623 0
FGFR3--TACC3 4 6 4.00 0.00 FGFR3^ENSG00000068078.20 9874 chr4:1806930:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 214 2641 0.05 0.00 CG 1.9219 AG 1.7819 0.0145 632 0
FGFR3--TACC3 3 9 3.00 0.01 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27591 chr4:1739703:+ INCL_NON_REF_SPLICE YES 21 2777 0.59 0.00 GA 1.8892 GG 1.7819 0.0109 625 0
TMPRSS2--ERG 3930 0 3930.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 12 114 302.38 34.18 GT 1.6895 AG 1.9219 14.2693 1104 0
FGFR3--BAIAP2L1 1553 5 1553.00 5.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 106 41 14.57 37.12 GT 1.8892 AG 1.8062 5.6569 1171 0
LMNA--NTRK1 1486 18 1486.00 17.94 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 3983 363 0.38 4.13 GT 1.7465 AG 1.5058 5.4606 947 0
LMNA--NTRK1 6 15 6.00 0.06 LMNA^ENSG00000160789.23 17734 chr1:156130774:+ NTRK1^ENSG00000198400.13 40292 chr1:156874909:+ INCL_NON_REF_SPLICE YES 3982 409 0.01 0.05 TG 1.7465 TC 1.4566 0.022 949 0
ETV6--NTRK3 1414 7 1414.00 6.97 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 2908 29 0.49 47.40 GT 1.7819 AG 1.9656 5.1593 1252 0
ETV6--NTRK3 7 7 7.00 0.03 ETV6^ENSG00000139083.11 11235 chr12:11869967:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- INCL_NON_REF_SPLICE YES 3022 29 0.00 0.50 AG 1.9086 AG 1.9656 0.0255 1252 0
TPM3--NTRK1 1328 4 1328.00 4.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 8174 36 0.16 36.03 GT 1.9329 AG 1.6895 4.8363 355 0
KIF5B--RET 1132 7 1132.00 7.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 1598 25 0.71 43.85 GT 1.9656 AG 1.9656 4.1355 3178 0
KIF5B--RET 6 0 6.00 0.00 KIF5B^ENSG00000170759.11 19817 chr10:32017303:- RET^ENSG00000165731.20 38845 chr10:43114493:+ INCL_NON_REF_SPLICE YES 2598 71 0.00 0.10 CG 1.9329 GA 1.8323 0.0218 3319 0
NCOA4--RET 1024 4 1024.00 4.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 2849 583 0.36 1.76 GT 1.9086 AG 1.8323 3.7325 5144 0
CD74--ROS1 981 9 981.00 8.94 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 32608 47 0.03 20.65 GT 1.7819 AG 1.7465 3.5944 2407 0
CD74--ROS1 4 9 4.00 0.04 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 12651 chr6:117425921:- INCL_NON_REF_SPLICE NO 35310 0 0.00 14.00 GG 1.7819 TT 1.9656 0.0146 3299 0
CD74--ROS1 3 9 3.00 0.03 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48732 chr6:117324414:- INCL_NON_REF_SPLICE YES 32608 50 0.00 0.25 AC 1.9329 GA 1.8295 0.011 2408 0
CD74--ROS1 3 0 3.00 0.00 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 48779 chr6:117324367:- INCL_NON_REF_SPLICE YES 35310 280 0.00 0.01 GG 1.7819 TG 1.7465 0.0109 2384 0
CCDC6--RET 882 4 882.00 4.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 2201 583 0.40 1.52 GT 1.8892 AG 1.8323 3.2169 2092 0
EML4--ALK 770 0 770.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 675 58 1.14 13.07 GT 1.6895 AG 1.9086 2.7958 1550 0
SLC34A2--ROS1 743 20 743.00 19.82 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 47 764.00 15.92 GT 1.8892 AG 1.7465 2.7697 999 0
SLC34A2--ROS1 4 15 4.00 0.08 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58028 chr6:117324412:- INCL_NON_REF_SPLICE YES 0 72 20.00 0.27 GA 1.7465 TG 1.8892 0.0148 1002 0
SLC34A2--ROS1 5 7 5.00 0.05 SLC34A2^ENSG00000157765.13 6083 chr4:25664329:+ ROS1^ENSG00000047936.11 58073 chr6:117324367:- INCL_NON_REF_SPLICE YES 25 282 0.50 0.05 GG 1.9086 TG 1.7465 0.0184 1047 0
SLC34A2--ROS1 3 13 3.00 0.05 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58030 chr6:117324410:- INCL_NON_REF_SPLICE YES 0 95 17.00 0.18 GA 1.7465 AT 1.9086 0.0111 1004 0
PAX8--PPARG 612 1 612.00 1.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 107 20 5.69 29.24 GT 1.8295 AG 1.9329 2.2257 1923 0
PAX8--PPARG 3 1 3.00 0.00 PAX8^ENSG00000125618.18 9708 chr2:113235400:- PPARG^ENSG00000132170.23 31400 chr3:12379700:+ INCL_NON_REF_SPLICE YES 123 11 0.04 0.42 TC 1.5329 TT 1.9219 0.0109 1929 0
SLC45A3--BRAF 527 0 527.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 1661 528.00 0.32 GT 1.5628 AG 1.7465 1.9135 2599 0
EGFR--SEPTIN14 491 1 491.00 1.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 14 36 32.87 13.32 GT 1.8892 AG 1.9899 1.7864 658 0
TFG--NTRK1 486 6 486.00 6.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 2249 36 0.22 13.32 GT 1.9329 AG 1.6895 1.7864 883 0
AC015911.9--SLFN12L 236 26 236.00 24.38 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 6142 chr17:35480195:- ONLY_REF_SPLICE YES 0 318 263.00 0.82 GT 1.9329 AG 1.8892 0.9454 533 0
AC015911.9--SLFN12L 132 3 132.00 1.00 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000286065.2 8152 chr17:35478185:- ONLY_REF_SPLICE YES 0 501 136.00 0.27 GT 1.9329 AG 1.9329 0.4829 1380 0
AC015911.9--SLFN12L 6 26 6.00 0.62 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 4635 chr17:35487914:- INCL_NON_REF_SPLICE YES 0 0 33.00 33.00 GT 1.9329 AG 1.7819 0.0241 1749 0
AC015911.9--SLFN12L 12 0 12.00 0.00 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 9263 chr17:35475485:- ONLY_REF_SPLICE YES 0 634 13.00 0.02 GT 1.9329 AG 1.7968 0.0436 508 0
AC015911.9--SLFN12L 1 0 1.00 0.00 AC015911.9^ENSG00000286030.2 1691 chr17:35522279:- SLFN12L^ENSG00000205045.11 12060 chr17:35464662:- ONLY_REF_SPLICE YES 0 7 2.00 0.25 GT 1.9329 AG 1.2419 0.0036 2031 0
STX16--NPEPL1 129 2 129.00 2.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1031 150 0.13 0.87 GT 1.7968 AG 1.8256 0.4757 1940 0
STX16--NPEPL1 3 0 3.00 0.00 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 968 150 0.00 0.03 GT 1.8062 AG 1.8256 0.0109 2729 0
STX16--NPEPL1 1 0 1.00 0.00 STX16^ENSG00000124222.22 1835 chr20:58652087:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1827 150 0.00 0.01 GT 1.9899 AG 1.8256 0.0036 1258 0
TVP23C--CDRT4 44 1 44.00 1.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- INCL_NON_REF_SPLICE YES 129 5 0.35 7.67 GT 1.9329 AG 1.9899 0.1634 1215 0
TVP23C--CDRT4 22 0 22.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 504 5 0.05 3.83 GT 1.8323 AG 1.9899 0.0799 2126 0
TVP23C--CDRT4 20 0 20.00 0.00 TVP23C^ENSG00000175106.17 14926 chr17:15503098:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- INCL_NON_REF_SPLICE YES 129 31 0.16 0.66 GT 1.9329 AG 1.6402 0.0726 137 0
TVP23C--CDRT4 10 0 10.00 0.00 TVP23C^ENSG00000175106.17 12676 chr17:15516419:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 22 5 0.48 1.83 GT 1.8892 AG 1.9899 0.0363 1949 0
TVP23C--CDRT4 7 0 7.00 0.00 TVP23C^ENSG00000175106.17 7982 chr17:15540433:- CDRT4^ENSG00000239704.11 23702 chr17:15438200:- ONLY_REF_SPLICE YES 504 31 0.02 0.25 GT 1.8323 AG 1.6402 0.0254 1363 0
TVP23C--CDRT4 1 0 1.00 0.00 TVP23C^ENSG00000175106.17 6853 chr17:15545785:- CDRT4^ENSG00000239704.11 22624 chr17:15440285:- ONLY_REF_SPLICE YES 268 5 0.01 0.33 GT 1.9086 AG 1.9899 0.0036 1774 0
BX571818.1--TMEM200A 12 0 12.00 0.00 BX571818.1^ENSG00000285417.1 5765 chr1:206053265:+ TMEM200A^ENSG00000164484.12 19910 chr6:130440407:+ ONLY_REF_SPLICE YES 210 139 0.06 0.09 GT 1.9656 AG 1.7465 0.0436 1493 0
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