#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	SpliceType	LeftGene	LeftBreakpoint	RightGene	RightBreakpoint	JunctionReads	SpanningFrags	LargeAnchorSupport	FFPM	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	annots	breakpoint_ID	blacklisted	blacklist_reasons	aih_curated_reason	CALL	filter_reason	FILTER	total_reads
AC099778.1--AC004943.2	59	0	58.87	0.0	INCL_NON_REF_SPLICE	AC099778.1^ENSG00000260236.1	chr3:47380520:-	AC004943.2^ENSG00000259768.6	chr16:72787696:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1102:40148:26488,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1102:7634:26502,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1107:6364:6479,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1108:37324:17478,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1112:43392:28688,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1114:44136:4167,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:50988:18165,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1120:31103:14718,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1125:11420:1757,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1127:16201:4545,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1131:47008:20491,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1141:46797:14410,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1144:51368:15208,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1148:38101:1448,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1149:6525:16764,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1166:36596:17366,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1185:34331:3606,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1189:30051:16680,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1207:16193:21066,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1211:10449:11453,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1212:38675:22313,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1224:21079:5288,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1235:2909:14312,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1239:19753:8735,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1263:9017:22229,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1274:51012:3298,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1277:29323:29403,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1309:10821:3662,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1325:12439:19917,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1325:43545:19258,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1326:2141:22901,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1346:28433:26124,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1393:18911:4951,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1403:27535:15349,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1433:46838:6157,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1448:35180:28422,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1448:4576:24933,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1478:24785:2625,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2109:42785:7656,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2124:6946:17969,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2175:41401:7726,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2179:36022:4125,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2224:43820:19426,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2262:20837:3494,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2329:39088:18431,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2330:5733:26797,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1122:49540:5680,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1380:25359:4153,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2124:8491:18740,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2256:5223:27063,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2280:7407:14648,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2291:9317:29193,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2331:22527:26180,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1239:19494:16217,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1289:2909:11986,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1316:18232:19804,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1325:32333:18221,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1342:38343:9099,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1469:50187:14452	.	NO_LDAS	0.2008	GT	1.9329	AG	0.9183	"[""INTERCHROMOSOMAL[chr3--chr16]""]"	chr3:47380520-chr16:72787696	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	59
HLA-C--MUC16	29	0	29.0	0.0	INCL_NON_REF_SPLICE	HLA-C^ENSG00000204525.17	chr6:31269489:-	MUC16^ENSG00000181143.15	chr19:8848985:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1105:9438:14354,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1107:9211:25900,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1120:28223:3929,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1136:32316:18025,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1136:43359:28268,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1154:10668:10935,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1175:49621:28941,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1206:50090:26306,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1219:40325:7824,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1234:37696:22691,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1254:14567:13485,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1273:38530:27189,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1338:42178:6633,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1347:21314:24835,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1395:44306:14802,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1404:4131:16848,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1404:49896:14816,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1433:31459:16400,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2121:6493:21780,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2220:43529:16764,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2220:49702:7810,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2228:12706:26853,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2309:28555:22663,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2340:8685:8230,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1256:11622:20239,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1271:46393:3620,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1371:45382:9660,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2302:24639:14116,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1376:14543:4587	.	NO_LDAS	0.0989	GT	1.9656	AG	1.8062	"[""GTEx_recurrent_StarF2019"",""INTERCHROMOSOMAL[chr6--chr19]""]"	chr6:31269489-chr19:8848985	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	29
AC099778.1--SLC6A8	29	0	28.97	0.0	INCL_NON_REF_SPLICE	AC099778.1^ENSG00000260236.1	chr3:47380520:-	SLC6A8^ENSG00000130821.17	chrX:153688033:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1106:33004:14564,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1144:32931:17829,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1144:35018:1406,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1172:3176:14606,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1211:9721:13471,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1227:31362:8413,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1230:18393:29613,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1264:12027:7824,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1272:26168:5526,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1332:10538:8945,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1409:18774:28142,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1463:48165:8258,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1471:41547:16329,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2105:18984:14494,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2180:26006:4601,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2283:30124:26811,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2352:20982:7221,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2368:36960:12224,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2431:27212:25690,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1156:51328:14886,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1184:50689:28884,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1252:5150:3760,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1256:49313:1252,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1313:7302:7011,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1345:17180:18768,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2123:21233:4181,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2280:2327:11397,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1259:2424:10416,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1403:28368:23181	.	NO_LDAS	0.0988	GT	1.9329	AG	0.9183	"[""INTERCHROMOSOMAL[chr3--chrX]""]"	chr3:47380520-chrX:153688033	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	29
NKX6-1--C6orf223	26	0	23.69	0.0	INCL_NON_REF_SPLICE	NKX6-1^ENSG00000163623.10	chr4:84498077:-	C6orf223^ENSG00000181577.16	chr6:44002762:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:32365:5862,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:5959:11215,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:35973:2948,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1174:28255:10626,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1182:30415:17703,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1207:17309:15965,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1207:45527:2990,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1230:4762:24891,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1296:41741:11902,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1353:14179:5470,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1438:35852:28884,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2130:9130:11832,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2160:39929:10921,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2214:34266:1953,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2281:38117:16189,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2309:31548:28464,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1163:3791:10935,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1170:44605:15377,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1320:3200:6465,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1487:12908:15461,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2147:31766:4685,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2177:26831:21052,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2222:15764:23826,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2270:6072:4153,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2435:23854:9309,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1184:19114:2864	.	NO_LDAS	0.0808	GT	0.7219	AG	1.231	"[""INTERCHROMOSOMAL[chr4--chr6]""]"	chr4:84498077-chr6:44002762	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	26
ZNF676--KANK3	24	0	23.81	0.0	ONLY_REF_SPLICE	ZNF676^ENSG00000196109.9	chr19:22193016:-	KANK3^ENSG00000186994.11	chr19:8325096:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1123:14211:1098,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:43157:22649,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1196:36119:16960,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1248:36022:13457,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1282:51943:29039,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1298:46191:29137,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1307:21411:2163,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1314:48472:14508,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1385:30666:10851,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1386:7868:21696,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1434:41701:12532,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1439:45430:28576,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1443:9195:25816,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2180:43222:10374,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2187:22099:12938,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2361:28231:1028,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2363:44201:10416,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2408:44104:14676,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1120:16055:3004,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1130:16242:27848,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1239:37680:16582,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1302:48359:5680,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2262:19850:27007,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1209:19882:13471	.	YES_LDAS	0.0812	GT	1.8256	AG	1.7968	"[""TumorFusionsNAR2018"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr19:13.84Mb]""]"	chr19:22193016-chr19:8325096	False			1		PASS	24
TPBG--CARM1	22	0	17.27	0.0	INCL_NON_REF_SPLICE	TPBG^ENSG00000146242.9	chr6:82365098:+	CARM1^ENSG00000142453.12	chr19:10871591:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1125:44128:8413,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1164:45859:13625,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1172:32939:24933,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1214:21476:25227,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1219:20537:13429,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1256:37049:15096,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1260:10093:12070,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1296:42542:17464,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1453:12010:11215,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1487:21314:4657,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2285:35455:8413,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2373:34816:6437,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2479:20926:28674,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2480:23167:20673,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1154:7407:14284,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1158:27584:20253,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1293:51053:28030,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1310:46935:26530,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1472:4503:1182,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2193:9203:5904,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2240:46959:4965,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1398:47234:25984	.	NO_LDAS	0.0589	GT	1.371	AG	0.9183	"[""INTERCHROMOSOMAL[chr6--chr19]""]"	chr6:82365098-chr19:10871591	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	22
KRT1--KRT79	22	0	22.0	0.0	ONLY_REF_SPLICE	KRT1^ENSG00000167768.4	chr12:52676275:-	KRT79^ENSG00000185640.6	chr12:52822379:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1107:24267:17927,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1123:37623:2892,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1138:42243:17983,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1143:47987:5708,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1152:32616:9267,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1159:13006:10921,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1305:13734:2681,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1339:2238:24443,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1346:20966:9323,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1390:9527:9407,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1479:2084:3774,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1479:7003:9211,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2114:28102:18431,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2241:7682:14648,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2353:14470:10178,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2444:44063:5414,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2471:24906:19510,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1163:40431:5540,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2353:44273:14354,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2440:3848:3746,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1122:51651:25956,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1181:30496:25325	.	NO_LDAS	0.075	GT	1.2867	AG	1.8062	"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr12:0.14Mb]""]"	chr12:52676275-chr12:52822379	False			0	Excluded annotation pattern: DGD_PARALOGS	FAIL	22
PARG--BMS1	21	0	21.0	0.0	ONLY_REF_SPLICE	PARG^ENSG00000227345.9	chr10:49885203:-	BMS1^ENSG00000165733.8	chr10:42791627:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1101:47606:21276,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1105:38012:10066,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1123:38999:16624,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1151:25780:19594,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1161:24364:12070,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1165:50996:18095,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1170:19203:4727,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1191:10304:3802,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1209:24307:22565,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1285:51045:15741,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1357:15700:5806,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1368:42364:24134,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1457:49459:18123,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1473:38772:2303,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1475:28344:14704,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2108:45147:8945,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2207:42008:22313,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2334:3783:3242,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2383:31888:2850,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1448:38076:3985,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1169:25569:23181	.	YES_LDAS	0.0716	GT	1.9329	AG	1.9329	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr10:6.98Mb]""]"	chr10:49885203-chr10:42791627	False			0	Excluded annotation pattern: GTEx_recurrent_StarF2019	FAIL	21
BPTF--BSND	19	0	19.0	0.0	INCL_NON_REF_SPLICE	BPTF^ENSG00000171634.18	chr17:67945620:+	BSND^ENSG00000162399.9	chr1:55006997:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1102:35698:1631,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:25877:3116,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:32300:1210,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1115:8985:25367,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1122:23345:20365,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1173:28377:8903,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1179:24663:17829,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1202:8224:2611,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1207:37858:16470,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1219:28919:29571,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1237:45511:5344,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1263:47606:22929,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1272:18402:18726,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1363:13548:5050,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1424:46984:13695,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2102:48432:7039,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2182:1922:14480,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2223:23021:18459,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2324:32001:21318	.	NO_LDAS	0.0648	GT	1.5628	AG	1.4256	"[""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:67945620-chr1:55006997	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	19
RBM14--RBM4	18	0	18.0	0.0	ONLY_REF_SPLICE	RBM14^ENSG00000239306.5	chr11:66617057:+	RBM4^ENSG00000173933.21	chr11:66639700:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1104:25958:18501,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1123:5085:26825,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:25497:20897,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1145:15360:18838,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1149:1858:25606,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1167:50964:21710,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1175:28013:22032,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1185:7351:11299,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1202:27333:19398,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1283:47841:29333,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1354:25666:3172,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1362:36912:20883,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1389:38950:20379,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1413:15659:4475,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1210:36661:19748,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2224:26864:21136,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1105:12180:17787,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1169:46506:13793	.	YES_LDAS	0.0614	GT	1.7465	AG	1.9086	"[""HGNC_GENEFAM"",""Greger_Normal"",""INTRACHROMOSOMAL[chr11:0.01Mb]"",""NEIGHBORS[8733]""]"	chr11:66617057-chr11:66639700	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	18
PGAP1--BTBD7	16	0	15.75	0.0	INCL_NON_REF_SPLICE	PGAP1^ENSG00000197121.15	chr2:196926628:-	BTBD7^ENSG00000011114.15	chr14:93332957:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1130:27867:8328,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1168:49767:29165,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1220:9292:13345,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1268:21767:2163,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1308:16420:15040,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2172:29841:2639,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2191:31386:12070,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1394:40681:6815,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1422:4495:2738,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1496:47598:12322,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2147:9559:23924,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2185:4519:5190,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2193:9810:6143,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2210:26119:22201,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2316:43036:17815,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1303:18127:14017	.	NO_LDAS	0.0537	GT	1.1589	AG	1.1589	"[""INTERCHROMOSOMAL[chr2--chr14]""]"	chr2:196926628-chr14:93332957	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	16
CBX8--RBM25	15	0	15.0	0.0	INCL_NON_REF_SPLICE	CBX8^ENSG00000141570.11	chr17:79795264:-	RBM25^ENSG00000119707.14	chr14:73105901:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1180:30318:22215,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1311:48958:20029,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2276:43011:20323,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2468:45924:16259,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1129:22026:13737,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1214:35989:1911,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1261:37486:17142,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1433:10595:22074,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2113:36976:22509,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2122:23183:21514,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2257:42154:18669,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2268:9745:18726,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2383:21621:21528,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2397:3031:3704,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1255:24898:8370	.	YES_LDAS	0.0512	GT	1.3383	AG	0.9968	"[""INTERCHROMOSOMAL[chr17--chr14]""]"	chr17:79795264-chr14:73105901	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	15
SHROOM1--ABL2	14	0	14.0	0.0	INCL_NON_REF_SPLICE	SHROOM1^ENSG00000164403.15	chr5:132825435:-	ABL2^ENSG00000143322.21	chr1:179229668:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1142:28595:19482,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1175:15473:20575,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1204:41596:13079,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1273:22511:25367,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1312:32697:15937,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:38408:15909,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1467:10409:7123,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2137:32333:9590,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2139:41911:13709,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2364:45179:22677,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1379:44840:10150,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1426:16120:15363,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2103:16460:13597,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2146:3403:4517	.	NO_LDAS	0.0477	GT	1.2419	AG	1.5546	"[""INTERCHROMOSOMAL[chr5--chr1]""]"	chr5:132825435-chr1:179229668	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	14
RPS24--PARVA	9	0	9.0	0.0	INCL_NON_REF_SPLICE	RPS24^ENSG00000138326.21	chr10:78040225:+	PARVA^ENSG00000197702.14	chr11:12530871:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1237:42769:8637,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1433:4098:23378,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2258:49775:9337,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1101:31054:2948,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1173:36054:20491,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1195:21193:1897,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1233:20327:15727,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2180:45649:23350,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1301:28279:26727	.	NO_LDAS	0.0307	GT	1.9086	AG	1.4295	"[""INTERCHROMOSOMAL[chr10--chr11]""]"	chr10:78040225-chr11:12530871	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	9
LEPROTL1--SMG1P1	8	0	2.67	0.0	ONLY_REF_SPLICE	LEPROTL1^ENSG00000104660.19	chr8:30104991:+	SMG1P1^ENSG00000237296.9	chr16:22451620:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1163:8168:15545,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1196:13022:17647,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1337:51134:22088,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1424:49532:5694,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1440:47340:29053,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2172:37219:28870,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2270:19421:6479,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1333:5967:1224	.	YES_LDAS	0.0091	GC	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr8--chr16]""]"	chr8:30104991-chr16:22451620	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	8
TLK2P1--AC110079.1	7	0	6.4	0.0	INCL_NON_REF_SPLICE	TLK2P1^ENSG00000226049.3	chr17:34039043:-	AC110079.1^ENSG00000260404.3	chr4:118595912:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1204:8192:24274,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1292:3524:11257,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1301:50495:26558,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1398:50762:2892,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2385:6663:12826,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1360:23199:2822,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1263:43675:27357	.	YES_LDAS	0.0218	GT	1.7465	AG	1.8892	"[""INTERCHROMOSOMAL[chr17--chr4]""]"	chr17:34039043-chr4:118595912	False			0	Read count too low: 7 < 8	FAIL	7
SCLT1--TNNT2	7	0	7.0	0.0	INCL_NON_REF_SPLICE	SCLT1^ENSG00000151466.12	chr4:128871361:-	TNNT2^ENSG00000118194.20	chr1:201372038:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:27438:29389,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1204:22900:25872,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2145:1493:8889,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2355:48440:28128,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1436:31491:20295,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2220:15441:18305,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1207:45309:4265	.	NO_LDAS	0.0239	GC	1.2867	AG	1.9329	"[""INTERCHROMOSOMAL[chr4--chr1]""]"	chr4:128871361-chr1:201372038	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	7
PGAP1--ADGRB2	7	0	6.24	0.0	INCL_NON_REF_SPLICE	PGAP1^ENSG00000197121.15	chr2:196926628:-	ADGRB2^ENSG00000121753.13	chr1:31764130:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1261:12561:8553,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1377:26613:2317,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2123:41321:13023,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1106:48399:16904,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1248:31257:4699,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1267:25812:26124,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1381:40795:5498	.	YES_LDAS	0.0213	GT	1.1589	AG	1.1589	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:196926628-chr1:31764130	False			0	Read count too low: 7 < 8	FAIL	7
YLPM1--CTBP2	6	0	2.43	0.0	INCL_NON_REF_SPLICE	YLPM1^ENSG00000119596.18	chr14:74763561:+	CTBP2^ENSG00000175029.17	chr10:125160428:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1209:29137:25045,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1249:44322:3144,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2291:28118:13023,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1108:18903:9926,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1372:8564:16652,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2106:26362:29179	.	NO_LDAS	0.0083	GT	1.2419	AG	1.2419	"[""INTERCHROMOSOMAL[chr14--chr10]""]"	chr14:74763561-chr10:125160428	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	6
UMAD1--GLCCI1	6	0	6.0	0.0	ONLY_REF_SPLICE	UMAD1^ENSG00000219545.11	chr7:7801743:+	GLCCI1^ENSG00000106415.13	chr7:8003908:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:31912:8300,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1217:14348:6493,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1262:33409:23784,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1293:9462:6745,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1317:51749:17044,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1365:47420:3354	.	YES_LDAS	0.0205	GT	1.9656	AG	1.7465	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr7:0.00Mb]"",""NEIGHBORS[776]""]"	chr7:7801743-chr7:8003908	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	6
TPPP--BRD9	6	0	6.0	0.0	ONLY_REF_SPLICE	TPPP^ENSG00000171368.12	chr5:693278:-	BRD9^ENSG00000028310.18	chr5:879889:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1287:47784:5694,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1447:13677:28870,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1451:25626:24821,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1467:10441:14830,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1474:44977:19020,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2318:41304:6913	.	YES_LDAS	0.0205	GT	1.8892	AG	1.585	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr5:0.16Mb]""]"	chr5:693278-chr5:879889	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	6
HLA-C--NUMA1	6	0	6.0	0.0	INCL_NON_REF_SPLICE	HLA-C^ENSG00000204525.17	chr6:31269493:-	NUMA1^ENSG00000137497.18	chr11:72013673:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1167:50066:24022,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1175:41830:25339,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1263:41426:1434,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1346:14082:25031,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2144:50818:8286,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2220:30634:24443	.	NO_LDAS	0.0205	GT	1.8256	AG	1.7819	"[""INTERCHROMOSOMAL[chr6--chr11]""]"	chr6:31269493-chr11:72013673	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	6
YLPM1--LARP1B	5	0	5.0	0.0	INCL_NON_REF_SPLICE	YLPM1^ENSG00000119596.18	chr14:74763561:+	LARP1B^ENSG00000138709.19	chr4:128062003:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2371:9495:29109,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1209:4681:3396,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1422:27746:7446,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1246:50956:15082,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1345:30100:19174	.	NO_LDAS	0.0171	GT	1.2419	AG	1.2419	"[""INTERCHROMOSOMAL[chr14--chr4]""]"	chr14:74763561-chr4:128062003	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	5
RASA4--POLR2J	5	0	0.56	0.0	ONLY_REF_SPLICE	RASA4^ENSG00000105808.18	chr7:102583004:-	POLR2J^ENSG00000005075.15	chr7:102476270:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1182:8289:20996,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1272:20829:25592,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1356:50681:20323,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1347:16953:1196,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2302:15967:25942	.	YES_LDAS	0.0019	GT	1.8256	AG	1.7465	"[""INTRACHROMOSOMAL[chr7:0.09Mb]"",""NEIGHBORS[94900]""]"	chr7:102583004-chr7:102476270	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	5
OAZ2--Z98745.1	5	0	3.9	0.0	INCL_NON_REF_SPLICE	OAZ2^ENSG00000180304.14	chr15:64703219:-	Z98745.1^ENSG00000286819.1	chr6:28490542:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1163:29477:29277,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1203:7504:11341,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1404:33360:20813,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2107:20958:23742,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1310:1445:14746	.	NO_LDAS	0.0133	GT	1.3753	AG	1.8256	"[""INTERCHROMOSOMAL[chr15--chr6]""]"	chr15:64703219-chr6:28490542	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	5
KRT78--KRT1	5	0	5.0	0.0	ONLY_REF_SPLICE	KRT78^ENSG00000170423.13	chr12:52848547:-	KRT1^ENSG00000167768.4	chr12:52678756:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1112:7407:24513,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1404:31613:8931,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1435:37745:15461,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2295:41458:4545,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2307:6210:12154	.	YES_LDAS	0.0171	GT	1.9329	AG	1.7968	"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr12:0.16Mb]""]"	chr12:52848547-chr12:52678756	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	5
KRT1--KRT77	5	0	5.0	0.0	ONLY_REF_SPLICE	KRT1^ENSG00000167768.4	chr12:52678542:-	KRT77^ENSG00000189182.10	chr12:52696430:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1223:14025:23700,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1236:16630:25465,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1241:45398:27679,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1264:36677:7922,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2372:30294:26572	.	YES_LDAS	0.0171	GT	1.8892	AG	1.5656	"[""DGD_PARALOGS"",""GTEx_recurrent_StarF2019"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr12:0.01Mb]"",""LOCAL_REARRANGEMENT:-:[9219]""]"	chr12:52678542-chr12:52696430	False			0	Excluded annotation pattern: GTEx_recurrent_StarF2019	FAIL	5
CYP4B1--CYP4X1	5	0	5.0	0.0	ONLY_REF_SPLICE	CYP4B1^ENSG00000142973.14	chr1:46815264:+	CYP4X1^ENSG00000186377.8	chr1:47029990:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1132:7367:18445,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1151:41523:9197,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1187:4187:5260,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1460:19469:28758,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2431:11582:28744	.	YES_LDAS	0.0171	GT	1.9329	AG	1.7465	"[""GTEx_recurrent_StarF2019"",""HGNC_GENEFAM"",""ChimerSeq"",""INTRACHROMOSOMAL[chr1:0.20Mb]""]"	chr1:46815264-chr1:47029990	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	5
TBC1D27P--RPS4X	4	0	2.0	0.0	INCL_NON_REF_SPLICE	TBC1D27P^ENSG00000128438.10	chr17:16923225:-	RPS4X^ENSG00000198034.11	chrX:72272711:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1178:38586:18067,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1268:9325:13653,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1361:8297:19188,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1432:11549:10753	.	NO_LDAS	0.0068	GC	1.8892	AG	1.3383	"[""INTERCHROMOSOMAL[chr17--chrX]""]"	chr17:16923225-chrX:72272711	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	4
ST3GAL4--EGR3	4	0	3.3	0.0	INCL_NON_REF_SPLICE	ST3GAL4^ENSG00000110080.20	chr11:126355984:+	EGR3^ENSG00000179388.9	chr8:22692996:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1497:3532:20155,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2466:32818:6871,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2246:17115:28520,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2380:51465:24401	.	NO_LDAS	0.0113	GT	1.4716	AG	1.4716	"[""INTERCHROMOSOMAL[chr11--chr8]""]"	chr11:126355984-chr8:22692996	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	4
SPRED2--STARD7	4	0	4.0	0.0	ONLY_REF_SPLICE	SPRED2^ENSG00000198369.10	chr2:65431962:-	STARD7^ENSG00000084090.14	chr2:96195549:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1257:12739:8132,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1364:46700:15307,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1367:48181:10472,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2495:4738:26614	.	NO_LDAS	0.0136	GT	1.4295	AG	1.7056	"[""INTRACHROMOSOMAL[chr2:30.75Mb]""]"	chr2:65431962-chr2:96195549	False			0	Read count too low: 4 < 8	FAIL	4
SMBD1P--MUC20	4	0	2.0	0.0	ONLY_REF_SPLICE	SMBD1P^ENSG00000283426.1	chr3:195708841:+	MUC20^ENSG00000176945.17	chr3:195724680:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2167:4487:24218,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2292:21953:3887,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2321:32066:6016,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2429:4891:18698	.	YES_LDAS	0.0068	GT	1.8892	AG	1.371	"[""INTRACHROMOSOMAL[chr3:0.01Mb]"",""NEIGHBORS[9241]""]"	chr3:195708841-chr3:195724680	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	4
HLA-J--HLA-W	4	0	4.0	0.0	ONLY_REF_SPLICE	HLA-J^ENSG00000204622.11	chr6:30007593:+	HLA-W^ENSG00000235290.1	chr6:29957439:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1169:38942:20505,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2245:16921:9211,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2253:44095:19903,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1434:34371:25816	.	YES_LDAS	0.0136	GT	1.5628	AG	1.5628	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr6:0.05Mb]"",""LOCAL_REARRANGEMENT:+:[47401]""]"	chr6:30007593-chr6:29957439	True	"pair|MHC complexes|HLA-W	HLA-J"		0	Blacklisted	FAIL	4
CHCHD10--AC005064.1	4	0	4.0	0.0	INCL_NON_REF_SPLICE	CHCHD10^ENSG00000250479.9	chr22:23767834:-	AC005064.1^ENSG00000234715.2	chr7:103446122:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1349:45236:11649,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2217:27802:15727,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2460:33611:28338,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1212:47509:8637	.	NO_LDAS	0.0136	GT	1.6402	AG	1.1589	"[""INTERCHROMOSOMAL[chr22--chr7]""]"	chr22:23767834-chr7:103446122	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	4
AL109615.3--EGR3	4	0	2.0	0.0	INCL_NON_REF_SPLICE	AL109615.3^ENSG00000237686.7	chr6:44074628:-	EGR3^ENSG00000179388.9	chr8:22692992:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1102:13192:13905,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2162:14963:21990,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2410:25553:20267,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1191:24946:14172	.	NO_LDAS	0.0068	GT	1.6402	AG	1.1589	"[""INTERCHROMOSOMAL[chr6--chr8]""]"	chr6:44074628-chr8:22692992	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	4
UNKL--SMURF2	3	0	3.0	0.0	INCL_NON_REF_SPLICE	UNKL^ENSG00000059145.19	chr16:1401647:-	SMURF2^ENSG00000108854.16	chr17:64662300:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1473:48068:27091,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1216:50244:10963,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2113:45293:10542	.	NO_LDAS	0.0102	GT	1.1033	AG	1.3753	"[""INTERCHROMOSOMAL[chr16--chr17]""]"	chr16:1401647-chr17:64662300	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	3
SOCAR--UPK3BL1	3	0	1.5	0.0	ONLY_REF_SPLICE	SOCAR^ENSG00000240350.3	chr2:111544287:+	UPK3BL1^ENSG00000267368.1	chr7:102640773:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:15335:6493,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1307:42752:21612,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1147:40406:7964	.	YES_LDAS	0.0051	GT	1.9086	AG	1.7465	"[""INTERCHROMOSOMAL[chr2--chr7]""]"	chr2:111544287-chr7:102640773	False			0	Read count too low: 3 < 8	FAIL	3
SNX19--RPS20P14	3	0	1.5	0.0	INCL_NON_REF_SPLICE	SNX19^ENSG00000120451.11	chr11:130878349:-	RPS20P14^ENSG00000223803.1	chr3:186900185:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1312:28563:29543,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2207:7852:21388,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1228:14292:16568	.	NO_LDAS	0.0051	GT	1.8062	AG	1.7465	"[""INTERCHROMOSOMAL[chr11--chr3]""]"	chr11:130878349-chr3:186900185	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	3
SETD2--TMEM161A	3	0	3.0	0.0	INCL_NON_REF_SPLICE	SETD2^ENSG00000181555.21	chr3:47164012:-	TMEM161A^ENSG00000064545.15	chr19:19130271:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1180:34298:22999,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1168:38716:10781,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1348:25642:2962	.	NO_LDAS	0.0102	GT	0.971	AG	1.2419	"[""INTERCHROMOSOMAL[chr3--chr19]""]"	chr3:47164012-chr19:19130271	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	3
SAA4--SAA1	3	0	3.0	0.0	ONLY_REF_SPLICE	SAA4^ENSG00000148965.10	chr11:18232395:-	SAA1^ENSG00000173432.12	chr11:18269717:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1182:16759:6493,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1188:23692:6255,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1261:3654:6661	.	YES_LDAS	0.0102	GT	1.9329	AG	1.7819	"[""DGD_PARALOGS"",""INTRACHROMOSOMAL[chr11:0.03Mb]"",""LOCAL_INVERSION:-:+:[29458]""]"	chr11:18232395-chr11:18269717	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	3
RPL13AP17--RPL13A	3	0	0.75	0.0	INCL_NON_REF_SPLICE	RPL13AP17^ENSG00000231322.5	chr7:78358665:+	RPL13A^ENSG00000142541.18	chr19:49491425:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1122:13871:3760,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1326:18523:27623,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2477:20756:20393	.	NO_LDAS	0.0026	GT	1.6729	AG	1.7819	"[""INTERCHROMOSOMAL[chr7--chr19]""]"	chr7:78358665-chr19:49491425	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	3
POLR2J--CRNDE	3	0	0.75	0.0	INCL_NON_REF_SPLICE	POLR2J^ENSG00000005075.15	chr7:102474361:-	CRNDE^ENSG00000245694.10	chr16:54874140:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1103:1817:13737,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1105:14518:23686,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1239:2796:2962	.	YES_LDAS	0.0026	GT	1.8295	AG	1.7465	"[""INTERCHROMOSOMAL[chr7--chr16]""]"	chr7:102474361-chr16:54874140	False			0	Read count too low: 3 < 8	FAIL	3
MED13--MARK2	3	0	3.0	0.0	ONLY_REF_SPLICE	MED13^ENSG00000108510.10	chr17:62032349:-	MARK2^ENSG00000072518.22	chr11:63902198:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1114:17471:3830,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1296:48270:3312,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1406:37300:14242	.	NO_LDAS	0.0102	GT	1.9329	AG	1.8256	"[""INTERCHROMOSOMAL[chr17--chr11]""]"	chr17:62032349-chr11:63902198	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	3
FXYD6--FXYD2	3	0	3.0	0.0	ONLY_REF_SPLICE	FXYD6^ENSG00000137726.17	chr11:117839781:-	FXYD2^ENSG00000137731.14	chr11:117822717:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1156:51635:12840,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1220:21937:1645,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1431:4285:24821	.	YES_LDAS	0.0102	GT	1.8892	AG	1.5219	"[""ConjoinG"",""INTRACHROMOSOMAL[chr11:0.01Mb]"",""NEIGHBORS[8278]""]"	chr11:117839781-chr11:117822717	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	3
CNTNAP3C--BX005040.4	3	0	3.0	0.0	INCL_NON_REF_SPLICE	CNTNAP3C^ENSG00000283378.1	chr9:61453030:+	BX005040.4^ENSG00000283541.1	chr9:61097036:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1237:35763:20211,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1257:30173:7334,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2224:52096:5120	.	YES_LDAS	0.0102	GT	1.8295	AG	1.8323	"[""INTRACHROMOSOMAL[chr9:0.22Mb]""]"	chr9:61453030-chr9:61097036	False			0	Read count too low: 3 < 8	FAIL	3
AL591742.1--RPL13A	3	0	0.75	0.0	INCL_NON_REF_SPLICE	AL591742.1^ENSG00000270780.1	chr1:114001640:-	RPL13A^ENSG00000142541.18	chr19:49491425:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1122:13871:3760,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1326:18523:27623,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2477:20756:20393	.	NO_LDAS	0.0026	GT	1.6729	AG	1.7819	"[""TCGA_StarF2019"",""INTERCHROMOSOMAL[chr1--chr19]""]"	chr1:114001640-chr19:49491425	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	3
ACTG1--ACTA2	3	0	3.0	0.0	ONLY_REF_SPLICE	ACTG1^ENSG00000184009.13	chr17:81511903:-	ACTA2^ENSG00000107796.13	chr10:88941869:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2409:16509:15867,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1108:45471:16007,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1197:23005:20954	.	NO_LDAS	0.0102	GT	1.8323	AG	1.7465	"[""GTEx_recurrent_StarF2019"",""INTERCHROMOSOMAL[chr17--chr10]""]"	chr17:81511903-chr10:88941869	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	3
AC138393.1--SEPTIN14	3	0	1.0	0.0	ONLY_REF_SPLICE	AC138393.1^ENSG00000229930.1	chr1:224030704:-	SEPTIN14^ENSG00000154997.9	chr7:55796092:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2207:40730:21248,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1331:9171:14900,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1193:10134:22901	.	YES_LDAS	0.0034	GT	1.7819	AG	1.9899	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:224030704-chr7:55796092	True		aih_curated_blacklist score(5)	0	aih_curated_blacklist score(5)	FAIL	3
AC044810.2--OVCH2	3	0	3.0	0.0	ONLY_REF_SPLICE	AC044810.2^ENSG00000254951.7	chr11:7879007:-	OVCH2^ENSG00000183378.12	chr11:7704674:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1124:8572:26306,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2458:24809:2387,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2253:30901:24485	.	YES_LDAS	0.0102	GT	1.7056	AG	1.8256	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr11:0.05Mb]"",""NEIGHBORS[47972]""]"	chr11:7879007-chr11:7704674	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	3
ABLIM3--PTPRB	3	0	3.0	0.0	INCL_NON_REF_SPLICE	ABLIM3^ENSG00000173210.20	chr5:149251419:+	PTPRB^ENSG00000127329.16	chr12:70558894:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1122:23895:6044,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1149:1712:13499,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1420:18790:29319	.	NO_LDAS	0.0102	GT	1.8295	AG	1.8892	"[""INTERCHROMOSOMAL[chr5--chr12]""]"	chr5:149251419-chr12:70558894	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	3
ZNF746--ZNF264	2	0	1.0	0.0	ONLY_REF_SPLICE	ZNF746^ENSG00000181220.17	chr7:149494204:-	ZNF264^ENSG00000083844.10	chr19:57193875:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:34056:23616,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1189:11922:7754	.	YES_LDAS	0.0034	GT	1.8892	AG	1.7465	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr7--chr19]""]"	chr7:149494204-chr19:57193875	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	2
ZNF720--ZNF254	2	0	2.0	0.0	ONLY_REF_SPLICE	ZNF720^ENSG00000197302.10	chr16:31723353:+	ZNF254^ENSG00000213096.11	chr19:24105940:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1268:2667:17535,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2262:17868:29487	.	YES_LDAS	0.0068	GT	1.8892	AG	1.8892	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr16--chr19]""]"	chr16:31723353-chr19:24105940	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	2
ZNF365--TASOR2	2	0	2.0	0.0	ONLY_REF_SPLICE	ZNF365^ENSG00000138311.18	chr10:62398777:+	TASOR2^ENSG00000108021.20	chr10:5712823:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1122:45260:27890,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1489:18887:14550	.	YES_LDAS	0.0068	GT	1.9086	AG	1.5219	"[""INTRACHROMOSOMAL[chr10:56.61Mb]""]"	chr10:62398777-chr10:5712823	False			0	Read count too low: 2 < 8	FAIL	2
ZKSCAN3--WIPF1	2	0	1.0	0.0	INCL_NON_REF_SPLICE	ZKSCAN3^ENSG00000189298.14	chr6:28359940:+	WIPF1^ENSG00000115935.18	chr2:174572034:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1450:46992:24246,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2152:38271:21248	.	NO_LDAS	0.0034	GT	1.1033	AG	1.9219	"[""INTERCHROMOSOMAL[chr6--chr2]""]"	chr6:28359940-chr2:174572034	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
Z95118.1--RPL37A	2	0	2.0	0.0	INCL_NON_REF_SPLICE	Z95118.1^ENSG00000231559.1	chr6:108817819:+	RPL37A^ENSG00000197756.10	chr2:216499963:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2210:42534:24204,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1112:47606:23798	.	YES_LDAS	0.0068	GT	1.6402	AG	1.8295	"[""INTERCHROMOSOMAL[chr6--chr2]""]"	chr6:108817819-chr2:216499963	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	2
YAP1--DNAJC24	2	0	2.0	0.0	ONLY_REF_SPLICE	YAP1^ENSG00000137693.14	chr11:102162571:+	DNAJC24^ENSG00000170946.15	chr11:31426287:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:43594:16820,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1195:15174:25914	.	NO_LDAS	0.0068	GT	1.9899	AG	1.6729	"[""INTRACHROMOSOMAL[chr11:70.68Mb]""]"	chr11:102162571-chr11:31426287	False			0	Read count too low: 2 < 8	FAIL	2
XPO7--SLC39A14	2	0	2.0	0.0	ONLY_REF_SPLICE	XPO7^ENSG00000130227.17	chr8:21919788:+	SLC39A14^ENSG00000104635.15	chr8:22404696:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1356:39824:26572,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1249:27001:21934	.	NO_LDAS	0.0068	GT	1.9219	AG	1.8892	"[""INTRACHROMOSOMAL[chr8:0.36Mb]""]"	chr8:21919788-chr8:22404696	False			0	Read count too low: 2 < 8	FAIL	2
VSTM4--NCOA4	2	0	2.0	0.0	ONLY_REF_SPLICE	VSTM4^ENSG00000165633.13	chr10:49107594:-	NCOA4^ENSG00000266412.6	chr10:46016694:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1134:24291:24751,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1413:16525:3873	.	NO_LDAS	0.0068	GT	1.7819	AG	1.5628	"[""INTRACHROMOSOMAL[chr10:2.98Mb]""]"	chr10:49107594-chr10:46016694	False			0	Read count too low: 2 < 8	FAIL	2
VSIG10--ZNF638	2	0	2.0	0.0	INCL_NON_REF_SPLICE	VSIG10^ENSG00000176834.14	chr12:118068377:-	ZNF638^ENSG00000075292.19	chr2:71427091:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1204:44621:25409,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2220:23175:8581	.	NO_LDAS	0.0068	GT	1.9899	AG	1.9329	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:118068377-chr2:71427091	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
VAV3--AMMECR1	2	0	2.0	0.0	ONLY_REF_SPLICE	VAV3^ENSG00000134215.16	chr1:107683488:-	AMMECR1^ENSG00000101935.11	chrX:110202536:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1115:19858:22789,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1495:21565:1785	.	NO_LDAS	0.0068	GT	1.9086	AG	1.7968	"[""INTERCHROMOSOMAL[chr1--chrX]""]"	chr1:107683488-chrX:110202536	False			0	Read count too low: 2 < 8	FAIL	2
UNC5A--BCL11B	2	0	2.0	0.0	INCL_NON_REF_SPLICE	UNC5A^ENSG00000113763.12	chr5:176874360:+	BCL11B^ENSG00000127152.18	chr14:99175635:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1381:47461:26881,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2287:13143:26600	.	NO_LDAS	0.0068	GT	1.7465	AG	1.7465	"[""INTERCHROMOSOMAL[chr5--chr14]""]"	chr5:176874360-chr14:99175635	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
TRPV1--AC092279.1	2	0	1.0	0.0	INCL_NON_REF_SPLICE	TRPV1^ENSG00000196689.12	chr17:3571524:-	AC092279.1^ENSG00000268362.6	chr19:24050943:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1128:48213:15124,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2123:37276:10500	.	NO_LDAS	0.0034	GT	1.8892	AG	1.4566	"[""INTERCHROMOSOMAL[chr17--chr19]""]"	chr17:3571524-chr19:24050943	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
TRPV1--AC010300.1	2	0	1.0	0.0	INCL_NON_REF_SPLICE	TRPV1^ENSG00000196689.12	chr17:3571524:-	AC010300.1^ENSG00000267934.1	chr19:23326568:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1128:48213:15124,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2123:37276:10500	.	NO_LDAS	0.0034	GT	1.8892	AG	1.4566	"[""INTERCHROMOSOMAL[chr17--chr19]""]"	chr17:3571524-chr19:23326568	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
TRPM5--EHF	2	0	2.0	0.0	INCL_NON_REF_SPLICE	TRPM5^ENSG00000070985.13	chr11:2407803:-	EHF^ENSG00000135373.13	chr11:34656911:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1109:8127:23658,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1427:26815:5302	.	NO_LDAS	0.0068	GT	1.7819	AG	1.9656	"[""INTRACHROMOSOMAL[chr11:32.20Mb]""]"	chr11:2407803-chr11:34656911	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
TRHDE--RBBP7	2	0	2.0	0.0	INCL_NON_REF_SPLICE	TRHDE^ENSG00000072657.9	chr12:72272638:+	RBBP7^ENSG00000102054.18	chrX:16844626:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1171:16986:20701,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2214:11808:15068	.	NO_LDAS	0.0068	GT	1.1589	AG	0.6998	"[""INTERCHROMOSOMAL[chr12--chrX]""]"	chr12:72272638-chrX:16844626	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
TRAPPC10--SCTR-AS1	2	0	1.0	0.0	INCL_NON_REF_SPLICE	TRAPPC10^ENSG00000160218.13	chr21:44089889:+	SCTR-AS1^ENSG00000231013.2	chr2:119484992:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1115:45657:21318,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2105:30011:7978	.	NO_LDAS	0.0034	GT	1.9219	AG	1.6895	"[""INTERCHROMOSOMAL[chr21--chr2]""]"	chr21:44089889-chr2:119484992	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
TNNT2--BAZ2B	2	0	2.0	0.0	INCL_NON_REF_SPLICE	TNNT2^ENSG00000118194.20	chr1:201368162:-	BAZ2B^ENSG00000123636.18	chr2:159439100:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:43028:15363,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1221:23830:18796	.	NO_LDAS	0.0068	GT	1.5219	AG	1.231	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:201368162-chr2:159439100	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
TMSB4X--COA1	2	0	0.67	0.0	INCL_NON_REF_SPLICE	TMSB4X^ENSG00000205542.11	chrX:12976069:+	COA1^ENSG00000106603.19	chr7:43647099:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1438:32867:21248,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2190:13960:11285	.	NO_LDAS	0.0023	GT	0.9056	AG	1.9329	"[""INTERCHROMOSOMAL[chrX--chr7]""]"	chrX:12976069-chr7:43647099	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
TMEM41B--QSER1	2	0	2.0	0.0	ONLY_REF_SPLICE	TMEM41B^ENSG00000166471.11	chr11:9314321:-	QSER1^ENSG00000060749.16	chr11:32927157:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1218:23175:28030,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1312:36046:18123	.	YES_LDAS	0.0068	GT	1.5656	AG	1.7819	"[""INTRACHROMOSOMAL[chr11:23.58Mb]""]"	chr11:9314321-chr11:32927157	False			0	Read count too low: 2 < 8	FAIL	2
TCERG1L--ARHGEF7	2	0	0.22	0.0	INCL_NON_REF_SPLICE	TCERG1L^ENSG00000176769.9	chr10:131311651:-	ARHGEF7^ENSG00000102606.18	chr13:111115150:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2115:25189:13527,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2183:39322:11860	.	NO_LDAS	0.0008	GC	1.4716	AG	0.8366	"[""INTERCHROMOSOMAL[chr10--chr13]""]"	chr10:131311651-chr13:111115150	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
STYXL1--TMEM120A	2	0	2.0	0.0	INCL_NON_REF_SPLICE	STYXL1^ENSG00000127952.17	chr7:75996445:-	TMEM120A^ENSG00000189077.11	chr7:75992557:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1202:28279:9996,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1175:41321:8230	.	YES_LDAS	0.0068	GT	1.5656	AG	1.8892	"[""Babiceanu_Normal"",""INTRACHROMOSOMAL[chr7:0.00Mb]"",""NEIGHBORS[1682]""]"	chr7:75996445-chr7:75992557	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
STX16--NPEPL1	2	0	2.0	0.0	ONLY_REF_SPLICE	STX16^ENSG00000124222.22	chr20:58673711:+	NPEPL1^ENSG00000215440.12	chr20:58691724:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2140:32098:5568,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:45956:26460	.	YES_LDAS	0.0068	GT	1.7968	AG	1.8256	"[""INTRACHROMOSOMAL[chr20:0.01Mb]"",""NEIGHBORS[9605]""]"	chr20:58673711-chr20:58691724	False			0	Read count too low: 2 < 8	FAIL	2
STMN3--DBNDD2	2	0	2.0	0.0	ONLY_REF_SPLICE	STMN3^ENSG00000197457.10	chr20:63653327:-	DBNDD2^ENSG00000244274.8	chr20:45408460:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1196:43165:6997,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1466:46579:6381	.	YES_LDAS	0.0068	GT	1.8295	AG	1.9329	"[""INTRACHROMOSOMAL[chr20:18.23Mb]""]"	chr20:63653327-chr20:45408460	False			0	Read count too low: 2 < 8	FAIL	2
SREBF1--NCS1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	SREBF1^ENSG00000072310.17	chr17:17820287:-	NCS1^ENSG00000107130.10	chr9:130236709:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1149:13038:27231,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2479:31507:8917	.	NO_LDAS	0.0068	GT	1.9329	AG	1.5546	"[""INTERCHROMOSOMAL[chr17--chr9]""]"	chr17:17820287-chr9:130236709	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
SPG21--LUC7L2	2	0	2.0	0.0	ONLY_REF_SPLICE	SPG21^ENSG00000090487.11	chr15:64989665:-	LUC7L2^ENSG00000146963.18	chr7:139398599:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2485:39128:16315,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1453:23134:14424	.	YES_LDAS	0.0068	GT	1.3996	AG	1.8256	"[""INTERCHROMOSOMAL[chr15--chr7]""]"	chr15:64989665-chr7:139398599	False			0	Read count too low: 2 < 8	FAIL	2
SP100--CAB39	2	0	2.0	0.0	ONLY_REF_SPLICE	SP100^ENSG00000067066.17	chr2:230450255:+	CAB39^ENSG00000135932.11	chr2:230759959:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1473:16929:1490,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1307:6534:1701	.	YES_LDAS	0.0068	GT	1.8892	AG	1.7465	"[""INTRACHROMOSOMAL[chr2:0.17Mb]""]"	chr2:230450255-chr2:230759959	False			0	Read count too low: 2 < 8	FAIL	2
SNX21--LINC02880	2	0	2.0	0.0	INCL_NON_REF_SPLICE	SNX21^ENSG00000124104.19	chr20:45835113:+	LINC02880^ENSG00000175967.4	chr6:113917021:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1102:35172:3494,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2152:24259:26488	.	NO_LDAS	0.0068	GT	1.7232	AG	1.6895	"[""INTERCHROMOSOMAL[chr20--chr6]""]"	chr20:45835113-chr6:113917021	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
SLC11A2--FYTTD1	2	0	2.0	0.0	ONLY_REF_SPLICE	SLC11A2^ENSG00000110911.17	chr12:51006174:-	FYTTD1^ENSG00000122068.13	chr3:197770132:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1190:8588:21542,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1279:51231:22733	.	YES_LDAS	0.0068	GC	1.9329	AG	1.4716	"[""INTERCHROMOSOMAL[chr12--chr3]""]"	chr12:51006174-chr3:197770132	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
SEPTIN14--AP006222.1	2	0	1.0	0.0	INCL_NON_REF_SPLICE	SEPTIN14^ENSG00000154997.9	chr7:55795924:-	AP006222.1^ENSG00000228463.10	chr1:268816:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1154:22697:6100,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1274:28134:8286	.	NO_LDAS	0.0034	GT	1.5546	AG	1.6895	"[""INTERCHROMOSOMAL[chr7--chr1]""]"	chr7:55795924-chr1:268816	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	2
SEPTIN14--AP006222.1	2	0	1.0	0.0	INCL_NON_REF_SPLICE	SEPTIN14^ENSG00000154997.9	chr7:55795924:-	AP006222.1^ENSG00000228463.10	chr1:268801:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1154:22697:6100,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1274:28134:8286	.	NO_LDAS	0.0034	GT	1.5546	AG	1.6895	"[""INTERCHROMOSOMAL[chr7--chr1]""]"	chr7:55795924-chr1:268801	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
SCAF11--SIRPB2	2	0	2.0	0.0	INCL_NON_REF_SPLICE	SCAF11^ENSG00000139218.18	chr12:45926856:-	SIRPB2^ENSG00000196209.13	chr20:1471090:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1258:25844:16175,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2185:49758:17240	.	NO_LDAS	0.0068	GT	1.5546	AG	1.9219	"[""INTERCHROMOSOMAL[chr12--chr20]""]"	chr12:45926856-chr20:1471090	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
RUNX1--NADK2	2	0	2.0	0.0	ONLY_REF_SPLICE	RUNX1^ENSG00000159216.19	chr21:34859474:-	NADK2^ENSG00000152620.13	chr5:36227565:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2155:27786:7488,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1122:48869:14214	.	YES_LDAS	0.0068	GT	1.7819	AG	1.9899	"[""INTERCHROMOSOMAL[chr21--chr5]""]"	chr21:34859474-chr5:36227565	False			0	Read count too low: 2 < 8	FAIL	2
RRS1--ADHFE1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	RRS1^ENSG00000179041.4	chr8:66429536:+	ADHFE1^ENSG00000147576.17	chr8:66440162:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1205:46531:10865,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2168:29736:28380	.	YES_LDAS	0.0068	GT	1.7232	AG	1.8892	"[""ConjoinG"",""INTRACHROMOSOMAL[chr8:0.00Mb]"",""NEIGHBORS[1759]""]"	chr8:66429536-chr8:66440162	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
RPTOR--FCHSD2	2	0	2.0	0.0	ONLY_REF_SPLICE	RPTOR^ENSG00000141564.15	chr17:80893865:+	FCHSD2^ENSG00000137478.15	chr11:72921950:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1289:3565:2808,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1302:11226:13835	.	NO_LDAS	0.0068	GT	1.7465	AG	1.9329	"[""INTERCHROMOSOMAL[chr17--chr11]""]"	chr17:80893865-chr11:72921950	False			0	Read count too low: 2 < 8	FAIL	2
RPS3--LINC00513	2	0	2.0	0.0	INCL_NON_REF_SPLICE	RPS3^ENSG00000149273.15	chr11:75402446:+	LINC00513^ENSG00000233559.2	chr7:130915930:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1106:14251:16273,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1217:33748:20589	.	NO_LDAS	0.0068	GT	1.7465	AG	1.8062	"[""INTERCHROMOSOMAL[chr11--chr7]""]"	chr11:75402446-chr7:130915930	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
RPL7AP7--AC044787.1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	RPL7AP7^ENSG00000213880.3	chr6:29803517:-	AC044787.1^ENSG00000213862.4	chr15:47730461:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1350:31564:25970,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2267:41588:26685	.	YES_LDAS	0.0068	AT	1.8323	AC	1.9656	"[""INTERCHROMOSOMAL[chr6--chr15]""]"	chr6:29803517-chr15:47730461	False			0	Read count too low: 2 < 8	FAIL	2
RPL37--RPL37P18	2	0	2.0	0.0	INCL_NON_REF_SPLICE	RPL37^ENSG00000145592.14	chr5:40834473:-	RPL37P18^ENSG00000229235.1	chr10:34664003:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2406:1841:8679,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1388:9438:7572	.	YES_LDAS	0.0068	GT	1.4566	AG	1.8892	"[""TCGA_StarF2019"",""INTERCHROMOSOMAL[chr5--chr10]""]"	chr5:40834473-chr10:34664003	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
RPL23AP53--SEPTIN14	2	0	2.0	0.0	ONLY_REF_SPLICE	RPL23AP53^ENSG00000223508.5	chr8:232129:-	SEPTIN14^ENSG00000154997.9	chr7:55796092:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1234:19987:3312,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1470:11954:20421	.	YES_LDAS	0.0068	GT	1.9086	AG	1.9899	"[""INTERCHROMOSOMAL[chr8--chr7]""]"	chr8:232129-chr7:55796092	True		aih_curated_blacklist score(5)	0	aih_curated_blacklist score(5)	FAIL	2
RPL17--RPL17P12	2	0	2.0	0.0	INCL_NON_REF_SPLICE	RPL17^ENSG00000265681.7	chr18:49491405:-	RPL17P12^ENSG00000230559.1	chr2:146194373:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1262:42065:24008,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2449:18620:7642	.	NO_LDAS	0.0068	GT	1.9219	AG	1.8892	"[""TCGA_StarF2019"",""CCLE_StarF2019"",""INTERCHROMOSOMAL[chr18--chr2]""]"	chr18:49491405-chr2:146194373	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	2
RPL11--RRM2B	2	0	2.0	0.0	INCL_NON_REF_SPLICE	RPL11^ENSG00000142676.14	chr1:23692763:+	RRM2B^ENSG00000048392.12	chr8:102206461:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2204:3095:25031,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1344:47129:24429	.	NO_LDAS	0.0068	GT	1.9329	AG	1.8295	"[""INTERCHROMOSOMAL[chr1--chr8]""]"	chr1:23692763-chr8:102206461	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	2
RNH1--NRG1	2	0	0.18	0.0	INCL_NON_REF_SPLICE	RNH1^ENSG00000023191.17	chr11:504432:-	NRG1^ENSG00000157168.20	chr8:31640281:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1461:36014:26895,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1461:2068:9239	.	NO_LDAS	0.0006	GT	1.3996	AG	1.3383	"[""INTERCHROMOSOMAL[chr11--chr8]""]"	chr11:504432-chr8:31640281	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
RBMS2--AC073264.2	2	0	2.0	0.0	INCL_NON_REF_SPLICE	RBMS2^ENSG00000076067.13	chr12:56569996:+	AC073264.2^ENSG00000230556.1	chr7:143579062:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1313:18693:12140,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2344:20238:24933	.	NO_LDAS	0.0068	GT	1.7056	AG	1.7465	"[""INTERCHROMOSOMAL[chr12--chr7]""]"	chr12:56569996-chr7:143579062	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
RASL10A--PMS2P3	2	0	1.0	0.0	INCL_NON_REF_SPLICE	RASL10A^ENSG00000100276.10	chr22:29315205:-	PMS2P3^ENSG00000127957.18	chr7:75527842:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:1073:26012,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2276:51215:19202	.	NO_LDAS	0.0034	GT	1.5628	AG	1.2419	"[""INTERCHROMOSOMAL[chr22--chr7]""]"	chr22:29315205-chr7:75527842	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
RARB--TRAK1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	RARB^ENSG00000077092.19	chr3:25174419:+	TRAK1^ENSG00000182606.17	chr3:42210096:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1241:14098:14158,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1295:8216:21738	.	NO_LDAS	0.0068	GT	1.7465	AG	0.9183	"[""INTRACHROMOSOMAL[chr3:16.42Mb]""]"	chr3:25174419-chr3:42210096	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
PTPRJ--GALNT2	2	0	2.0	0.0	ONLY_REF_SPLICE	PTPRJ^ENSG00000149177.13	chr11:47981008:+	GALNT2^ENSG00000143641.10	chr1:230178218:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1229:52040:18445,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:19583:15811	.	NO_LDAS	0.0068	GT	1.7056	AG	1.7056	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:47981008-chr1:230178218	False			0	Read count too low: 2 < 8	FAIL	2
PTMAP4--AC026523.4	2	0	2.0	0.0	INCL_NON_REF_SPLICE	PTMAP4^ENSG00000231503.4	chr12:9240142:-	AC026523.4^ENSG00000287321.1	chr15:97560876:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1314:47639:16512,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2201:35374:29263	.	NO_LDAS	0.0068	GT	1.231	AG	1.231	"[""INTERCHROMOSOMAL[chr12--chr15]""]"	chr12:9240142-chr15:97560876	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
PRR11--SCAPER	2	0	2.0	0.0	ONLY_REF_SPLICE	PRR11^ENSG00000068489.13	chr17:59197789:+	SCAPER^ENSG00000140386.13	chr15:76354140:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1423:9187:18207,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1428:50616:29235	.	NO_LDAS	0.0068	GT	1.7819	AG	1.9329	"[""INTERCHROMOSOMAL[chr17--chr15]""]"	chr17:59197789-chr15:76354140	False			0	Read count too low: 2 < 8	FAIL	2
PPIG--ALPK3	2	0	2.0	0.0	INCL_NON_REF_SPLICE	PPIG^ENSG00000138398.17	chr2:169584603:+	ALPK3^ENSG00000136383.7	chr15:84840083:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1381:11274:19272,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1295:36499:10360	.	NO_LDAS	0.0068	GT	1.6729	AG	1.7968	"[""INTERCHROMOSOMAL[chr2--chr15]""]"	chr2:169584603-chr15:84840083	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
POLR2J--AC004980.3	2	0	0.67	0.0	INCL_NON_REF_SPLICE	POLR2J^ENSG00000005075.15	chr7:102474361:-	AC004980.3^ENSG00000230305.2	chr7:76527766:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1292:28498:25507,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1428:40382:6941	.	YES_LDAS	0.0023	GT	1.8295	AG	1.7465	"[""INTRACHROMOSOMAL[chr7:25.94Mb]""]"	chr7:102474361-chr7:76527766	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	2
PLD4--COL15A1	2	0	1.0	0.0	INCL_NON_REF_SPLICE	PLD4^ENSG00000166428.14	chr14:104929431:+	COL15A1^ENSG00000204291.11	chr9:98943824:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1215:42704:26320,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1453:19033:21556	.	NO_LDAS	0.0034	GT	1.6402	AG	1.5329	"[""INTERCHROMOSOMAL[chr14--chr9]""]"	chr14:104929431-chr9:98943824	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
PCP4--IGSF5	2	0	2.0	0.0	ONLY_REF_SPLICE	PCP4^ENSG00000183036.11	chr21:39898527:+	IGSF5^ENSG00000183067.5	chr21:39792008:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1385:27592:13961,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2142:31693:20757	.	YES_LDAS	0.0068	GT	1.9329	AG	1.5546	"[""INTRACHROMOSOMAL[chr21:0.07Mb]"",""LOCAL_REARRANGEMENT:+:[65342]""]"	chr21:39898527-chr21:39792008	False			0	Read count too low: 2 < 8	FAIL	2
OR51S1--TP53I11	2	0	2.0	0.0	INCL_NON_REF_SPLICE	OR51S1^ENSG00000176922.4	chr11:4848669:-	TP53I11^ENSG00000175274.19	chr11:44933050:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2194:38942:16357,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2395:41248:22957	.	NO_LDAS	0.0068	GT	1.8295	AG	1.4256	"[""INTRACHROMOSOMAL[chr11:40.04Mb]""]"	chr11:4848669-chr11:44933050	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	2
NRIP2--TLK1	2	0	0.5	0.0	INCL_NON_REF_SPLICE	NRIP2^ENSG00000053702.15	chr12:2827192:-	TLK1^ENSG00000198586.14	chr2:171006857:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1182:34913:26979,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1227:45082:23069	.	NO_LDAS	0.0017	GT	1.9086	AG	1.8323	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:2827192-chr2:171006857	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
NRIP2--AL589935.3	2	0	0.5	0.0	INCL_NON_REF_SPLICE	NRIP2^ENSG00000053702.15	chr12:2827192:-	AL589935.3^ENSG00000287380.1	chr6:71239668:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1182:34913:26979,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1227:45082:23069	.	NO_LDAS	0.0017	GT	1.9086	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr6]""]"	chr12:2827192-chr6:71239668	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
NRG2--MAGED4	2	0	1.0	0.0	INCL_NON_REF_SPLICE	NRG2^ENSG00000158458.21	chr5:139880856:-	MAGED4^ENSG00000154545.16	chrX:52187034:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1292:24647:25171,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1414:27115:4223	.	NO_LDAS	0.0034	GT	1.9899	AG	1.4566	"[""INTERCHROMOSOMAL[chr5--chrX]""]"	chr5:139880856-chrX:52187034	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
NLRC5--MRC1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	NLRC5^ENSG00000140853.16	chr16:57033669:+	MRC1^ENSG00000260314.3	chr10:17856342:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1129:15433:21374,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1243:39686:27595	.	NO_LDAS	0.0068	GT	1.9899	AG	1.8323	"[""INTERCHROMOSOMAL[chr16--chr10]""]"	chr16:57033669-chr10:17856342	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
NFYC--CSNK1G1	2	0	2.0	0.0	ONLY_REF_SPLICE	NFYC^ENSG00000066136.20	chr1:40738948:+	CSNK1G1^ENSG00000169118.18	chr15:64180454:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1433:13976:12098,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1316:37462:20603	.	YES_LDAS	0.0068	GT	1.9329	AG	1.9899	"[""INTERCHROMOSOMAL[chr1--chr15]""]"	chr1:40738948-chr15:64180454	False			0	Read count too low: 2 < 8	FAIL	2
NFATC2IP--SPNS1	2	0	2.0	0.0	ONLY_REF_SPLICE	NFATC2IP^ENSG00000176953.12	chr16:28952204:+	SPNS1^ENSG00000169682.18	chr16:28975101:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1462:44492:14424,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2127:44880:15601	.	YES_LDAS	0.0068	GT	1.5329	AG	1.6402	"[""Babiceanu_Normal"",""INTRACHROMOSOMAL[chr16:0.01Mb]"",""NEIGHBORS[7124]""]"	chr16:28952204-chr16:28975101	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
NEK9--ADGRB2	2	0	2.0	0.0	INCL_NON_REF_SPLICE	NEK9^ENSG00000119638.14	chr14:75091434:-	ADGRB2^ENSG00000121753.13	chr1:31764130:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1327:4309:27133,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1366:45026:7894	.	NO_LDAS	0.0068	GT	1.053	AG	1.1589	"[""INTERCHROMOSOMAL[chr14--chr1]""]"	chr14:75091434-chr1:31764130	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
NDUFB8--SEC31B	2	0	2.0	0.0	ONLY_REF_SPLICE	NDUFB8^ENSG00000166136.16	chr10:100526399:-	SEC31B^ENSG00000075826.17	chr10:100509511:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1183:40172:11369,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2164:16492:9674	.	NO_LDAS	0.0068	GT	1.9329	AG	1.9656	"[""ConjoinG"",""Greger_Normal"",""INTRACHROMOSOMAL[chr10:0.00Mb]"",""NEIGHBORS[3876]""]"	chr10:100526399-chr10:100509511	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
NCOR1--AC108156.1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	NCOR1^ENSG00000141027.21	chr17:16146495:-	AC108156.1^ENSG00000249752.1	chr4:149062506:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1173:43400:5386,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2175:43942:12546	.	NO_LDAS	0.0068	GT	1.5329	AG	1.6895	"[""INTERCHROMOSOMAL[chr17--chr4]""]"	chr17:16146495-chr4:149062506	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	2
MUC20--SMBD1P	2	0	2.0	0.0	ONLY_REF_SPLICE	MUC20^ENSG00000176945.17	chr3:195729739:+	SMBD1P^ENSG00000283426.1	chr3:195708747:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1102:35180:15671,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1242:2723:13373	.	YES_LDAS	0.0068	GT	1.8892	AG	1.9329	"[""INTRACHROMOSOMAL[chr3:0.01Mb]"",""LOCAL_REARRANGEMENT:+:[9241]""]"	chr3:195729739-chr3:195708747	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	2
MRPL28--PRRC2A	2	0	2.0	0.0	INCL_NON_REF_SPLICE	MRPL28^ENSG00000086504.17	chr16:369359:-	PRRC2A^ENSG00000204469.13	chr6:31629572:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2386:44589:4251,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1101:16800:27777	.	NO_LDAS	0.0068	GT	1.5628	AG	1.8256	"[""INTERCHROMOSOMAL[chr16--chr6]""]"	chr16:369359-chr6:31629572	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
MMEL1--NR3C2	2	0	2.0	0.0	INCL_NON_REF_SPLICE	MMEL1^ENSG00000142606.16	chr1:2629380:-	NR3C2^ENSG00000151623.15	chr4:148154857:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2111:3476:6689,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2357:35018:17717	.	YES_LDAS	0.0068	GT	1.585	AG	1.585	"[""INTERCHROMOSOMAL[chr1--chr4]""]"	chr1:2629380-chr4:148154857	False			0	Read count too low: 2 < 8	FAIL	2
MDFIC--ANXA2	2	0	1.0	0.0	ONLY_REF_SPLICE	MDFIC^ENSG00000135272.12	chr7:114923127:+	ANXA2^ENSG00000182718.18	chr15:60386086:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1193:49532:3536,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1195:11096:28941	.	YES_LDAS	0.0034	GT	1.7465	AG	1.8062	"[""INTERCHROMOSOMAL[chr7--chr15]""]"	chr7:114923127-chr15:60386086	False			0	Read count too low: 2 < 8	FAIL	2
MALRD1--PLXDC2	2	0	2.0	0.0	INCL_NON_REF_SPLICE	MALRD1^ENSG00000204740.11	chr10:19790186:+	PLXDC2^ENSG00000120594.17	chr10:20001775:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1237:47429:2359,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1442:8038:16105	.	YES_LDAS	0.0068	GT	1.8256	AG	1.8062	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr10:0.03Mb]"",""NEIGHBORS[25838]""]"	chr10:19790186-chr10:20001775	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	2
LINC01409--C1orf198	2	0	1.0	0.0	ONLY_REF_SPLICE	LINC01409^ENSG00000237491.10	chr1:779092:+	C1orf198^ENSG00000119280.17	chr1:230843896:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2113:37809:16974,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2343:20796:5106	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9329	"[""INTRACHROMOSOMAL[chr1:230.03Mb]""]"	chr1:779092-chr1:230843896	False			0	Read count too low: 2 < 8	FAIL	2
LEPROT--LEPR	2	0	2.0	0.0	ONLY_REF_SPLICE	LEPROT^ENSG00000213625.9	chr1:65425378:+	LEPR^ENSG00000116678.20	chr1:65565546:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1124:37890:18936,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2171:18515:7488	.	YES_LDAS	0.0068	GT	1.8256	AG	1.9219	"[""GTEx_recurrent_StarF2019"",""ChimerSeq"",""INTRACHROMOSOMAL[chr1:0.09Mb]"",""NEIGHBORS[89682]""]"	chr1:65425378-chr1:65565546	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	2
LCE2A--LNPK	2	0	2.0	0.0	INCL_NON_REF_SPLICE	LCE2A^ENSG00000187173.4	chr1:152699091:+	LNPK^ENSG00000144320.14	chr2:176002254:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:38991:2766,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1309:41644:16414	.	NO_LDAS	0.0068	GT	1.7465	AG	1.5656	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:152699091-chr2:176002254	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
LAMA2--UVRAG	2	0	2.0	0.0	INCL_NON_REF_SPLICE	LAMA2^ENSG00000196569.13	chr6:128883357:+	UVRAG^ENSG00000198382.9	chr11:75979911:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1495:50551:17969,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2208:13208:25311	.	NO_LDAS	0.0068	GT	1.7465	AG	1.9329	"[""INTERCHROMOSOMAL[chr6--chr11]""]"	chr6:128883357-chr11:75979911	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
KRT75--KRT127P	2	0	0.67	0.0	ONLY_REF_SPLICE	KRT75^ENSG00000170454.6	chr12:52433807:-	KRT127P^ENSG00000257125.1	chr12:52753520:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1185:9503:12028,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1309:23717:4363	.	NO_LDAS	0.0023	GT	1.9329	AG	1.7465	"[""INTRACHROMOSOMAL[chr12:0.32Mb]""]"	chr12:52433807-chr12:52753520	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
KRT17P1--SSH1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	KRT17P1^ENSG00000131885.17	chr17:16843667:-	SSH1^ENSG00000084112.15	chr12:108787839:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1422:33732:2709,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1143:42065:17254	.	NO_LDAS	0.0068	GT	1.4566	AG	1.5329	"[""INTERCHROMOSOMAL[chr17--chr12]""]"	chr17:16843667-chr12:108787839	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
KMT5AP1--TM9SF3	2	0	1.0	0.0	INCL_NON_REF_SPLICE	KMT5AP1^ENSG00000279730.2	chr13:18297739:+	TM9SF3^ENSG00000077147.16	chr10:96586877:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1111:10724:12658,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1206:36232:8188	.	NO_LDAS	0.0034	GT	0.9183	AG	1.7232	"[""INTERCHROMOSOMAL[chr13--chr10]""]"	chr13:18297739-chr10:96586877	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
KLK11--PRSS30P	2	0	2.0	0.0	ONLY_REF_SPLICE	KLK11^ENSG00000167757.14	chr19:51023092:-	PRSS30P^ENSG00000172460.17	chr16:2839931:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2254:28021:24597,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1298:22608:25367	.	NO_LDAS	0.0068	GT	1.9329	AG	1.5546	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr19--chr16]""]"	chr19:51023092-chr16:2839931	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	2
KLF5--CHFR	2	0	2.0	0.0	INCL_NON_REF_SPLICE	KLF5^ENSG00000102554.14	chr13:73059588:+	CHFR^ENSG00000072609.18	chr12:132859128:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1201:21694:4335,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1249:7877:20645	.	NO_LDAS	0.0068	GT	1.8892	AG	1.5628	"[""INTERCHROMOSOMAL[chr13--chr12]""]"	chr13:73059588-chr12:132859128	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
KHDRBS2--XYLT1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	KHDRBS2^ENSG00000112232.10	chr6:62286025:-	XYLT1^ENSG00000103489.12	chr16:17470925:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1333:12172:9393,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1384:25877:13737	.	YES_LDAS	0.0068	GC	1.3996	AG	0.8366	"[""INTERCHROMOSOMAL[chr6--chr16]""]"	chr6:62286025-chr16:17470925	False			0	Read count too low: 2 < 8	FAIL	2
KDM7A--MKRN1	2	0	2.0	0.0	ONLY_REF_SPLICE	KDM7A^ENSG00000006459.11	chr7:140176744:-	MKRN1^ENSG00000133606.11	chr7:140472011:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2214:31305:1168,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1177:23353:10570	.	YES_LDAS	0.0068	GT	1.9086	AG	1.7465	"[""INTRACHROMOSOMAL[chr7:0.28Mb]""]"	chr7:140176744-chr7:140472011	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
JAZF1--SEPTIN7	2	0	0.5	0.0	ONLY_REF_SPLICE	JAZF1^ENSG00000153814.13	chr7:27895220:-	SEPTIN7^ENSG00000122545.20	chr7:35863552:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1230:39832:10612,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:2230:6829	.	YES_LDAS	0.0017	GT	1.8062	AG	1.7819	"[""INTRACHROMOSOMAL[chr7:7.62Mb]""]"	chr7:27895220-chr7:35863552	False			0	Read count too low: 2 < 8	FAIL	2
HMOX2--PHF19	2	0	2.0	0.0	INCL_NON_REF_SPLICE	HMOX2^ENSG00000103415.12	chr16:4505610:+	PHF19^ENSG00000119403.15	chr9:120862989:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:28223:23378,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2249:49330:4391	.	NO_LDAS	0.0068	GT	1.6895	AG	1.5058	"[""INTERCHROMOSOMAL[chr16--chr9]""]"	chr16:4505610-chr9:120862989	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
HMGN2--GPC1	2	0	2.0	0.0	ONLY_REF_SPLICE	HMGN2^ENSG00000198830.11	chr1:26472627:+	GPC1^ENSG00000063660.9	chr2:240459030:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1101:24000:13093,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1297:6501:29137	.	YES_LDAS	0.0068	GT	1.7465	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:26472627-chr2:240459030	False			0	Read count too low: 2 < 8	FAIL	2
HIPK2--LMBR1	2	0	2.0	0.0	ONLY_REF_SPLICE	HIPK2^ENSG00000064393.16	chr7:139777605:-	LMBR1^ENSG00000105983.22	chr7:156836885:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2152:50770:9604,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1387:25480:12995	.	YES_LDAS	0.0068	GT	1.8892	AG	1.5546	"[""INTRACHROMOSOMAL[chr7:16.89Mb]""]"	chr7:139777605-chr7:156836885	False			0	Read count too low: 2 < 8	FAIL	2
H2AC18--H2AC8	2	0	0.25	0.0	INCL_NON_REF_SPLICE	H2AC18^ENSG00000203812.2	chr1:149842404:-	H2AC8^ENSG00000277075.2	chr6:26217234:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1192:4090:14144,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1461:38036:15321	.	NO_LDAS	0.0009	GC	1.9656	AG	1.7465	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:149842404-chr6:26217234	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
GSDMA--LINC01735	2	0	2.0	0.0	INCL_NON_REF_SPLICE	GSDMA^ENSG00000167914.12	chr17:39966437:+	LINC01735^ENSG00000261453.2	chr1:208612778:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1216:22762:28632,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2354:19000:3144	.	NO_LDAS	0.0068	GT	1.7465	AG	1.7056	"[""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:39966437-chr1:208612778	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
GPM6B--DMD	2	0	2.0	0.0	ONLY_REF_SPLICE	GPM6B^ENSG00000046653.15	chrX:13938507:-	DMD^ENSG00000198947.17	chrX:32699293:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1162:16897:19286,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1447:32842:23756	.	YES_LDAS	0.0068	GT	1.9656	AG	1.9329	"[""INTRACHROMOSOMAL[chrX:17.16Mb]""]"	chrX:13938507-chrX:32699293	False			0	Read count too low: 2 < 8	FAIL	2
GNPTG--CDC42EP1	2	0	2.0	0.0	ONLY_REF_SPLICE	GNPTG^ENSG00000090581.10	chr16:1352306:+	CDC42EP1^ENSG00000128283.7	chr22:37566072:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2247:51724:19356,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2441:6032:3550	.	YES_LDAS	0.0068	GT	1.7819	AG	1.8062	"[""INTERCHROMOSOMAL[chr16--chr22]""]"	chr16:1352306-chr22:37566072	False			0	Read count too low: 2 < 8	FAIL	2
GARS1-DT--KIAA0825	2	0	2.0	0.0	ONLY_REF_SPLICE	GARS1-DT^ENSG00000196295.12	chr7:30561466:-	KIAA0825^ENSG00000185261.14	chr5:94154124:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1161:21452:1056,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1164:4196:22117	.	YES_LDAS	0.0068	GT	1.9329	AG	1.4295	"[""INTERCHROMOSOMAL[chr7--chr5]""]"	chr7:30561466-chr5:94154124	False			0	Read count too low: 2 < 8	FAIL	2
FBXW2--PSMD5	2	0	2.0	0.0	ONLY_REF_SPLICE	FBXW2^ENSG00000119402.17	chr9:120787769:-	PSMD5^ENSG00000095261.14	chr9:120821464:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1156:14834:5736,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2273:27195:6689	.	YES_LDAS	0.0068	GT	1.9656	AG	1.9899	"[""INTRACHROMOSOMAL[chr9:0.02Mb]"",""LOCAL_REARRANGEMENT:-:[22080]""]"	chr9:120787769-chr9:120821464	False			0	Read count too low: 2 < 8	FAIL	2
FBXW11--UBTD2	2	0	2.0	0.0	ONLY_REF_SPLICE	FBXW11^ENSG00000072803.18	chr5:172006458:-	UBTD2^ENSG00000168246.6	chr5:172234358:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1393:44985:16315,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2416:25367:20757	.	YES_LDAS	0.0068	GT	1.9656	AG	1.8892	"[""DEEPEST2019"",""INTRACHROMOSOMAL[chr5:0.20Mb]""]"	chr5:172006458-chr5:172234358	False			0	Read count too low: 2 < 8	FAIL	2
FADS1--TMEM258	2	0	2.0	0.0	INCL_NON_REF_SPLICE	FADS1^ENSG00000149485.19	chr11:61801867:-	TMEM258^ENSG00000134825.16	chr11:61790602:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1260:44484:24611,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2439:23612:6675	.	NO_LDAS	0.0068	GT	1.7465	AG	1.8892	"[""INTRACHROMOSOMAL[chr11:0.01Mb]"",""NEIGHBORS[6825]""]"	chr11:61801867-chr11:61790602	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
EIPR1--TRAPPC12	2	0	2.0	0.0	ONLY_REF_SPLICE	EIPR1^ENSG00000032389.13	chr2:3377648:-	TRAPPC12^ENSG00000171853.16	chr2:3401777:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1260:5587:22929,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2427:43052:24821	.	YES_LDAS	0.0068	GT	1.8295	AG	1.7819	"[""INTRACHROMOSOMAL[chr2:0.00Mb]"",""LOCAL_INVERSION:-:+:[1845]""]"	chr2:3377648-chr2:3401777	False			0	Read count too low: 2 < 8	FAIL	2
DYSF--SEMA4A	2	0	2.0	0.0	INCL_NON_REF_SPLICE	DYSF^ENSG00000135636.14	chr2:71564160:+	SEMA4A^ENSG00000196189.13	chr1:156156363:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1273:32502:24485,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2105:20740:26586	.	NO_LDAS	0.0068	GT	1.5656	AG	1.7232	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:71564160-chr1:156156363	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
DYRK1B--MRPL17	2	0	1.0	0.0	INCL_NON_REF_SPLICE	DYRK1B^ENSG00000105204.14	chr19:39826007:-	MRPL17^ENSG00000158042.9	chr11:6682230:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2219:5611:21738,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2238:49912:9828	.	NO_LDAS	0.0034	GT	1.3383	AG	1.6895	"[""INTERCHROMOSOMAL[chr19--chr11]""]"	chr19:39826007-chr11:6682230	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
DTX2P1--DTX1	2	0	2.0	0.0	ONLY_REF_SPLICE	DTX2P1^ENSG00000186704.9	chr7:77002321:+	DTX1^ENSG00000135144.7	chr12:113095325:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2279:29679:19034,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2304:44087:20253	.	NO_LDAS	0.0068	GT	1.8892	AG	1.6402	"[""INTERCHROMOSOMAL[chr7--chr12]""]"	chr7:77002321-chr12:113095325	False			0	Read count too low: 2 < 8	FAIL	2
DNAJB6--TAGLN3	2	0	2.0	0.0	INCL_NON_REF_SPLICE	DNAJB6^ENSG00000105993.15	chr7:157410501:+	TAGLN3^ENSG00000144834.14	chr3:111999552:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1332:26467:10304,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1413:49864:10052	.	NO_LDAS	0.0068	GT	0.9056	AG	1.053	"[""INTERCHROMOSOMAL[chr7--chr3]""]"	chr7:157410501-chr3:111999552	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
DBP--TRAK1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	DBP^ENSG00000105516.11	chr19:48635580:-	TRAK1^ENSG00000182606.17	chr3:42210102:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1275:20723:12014,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1421:46636:2359	.	NO_LDAS	0.0068	GT	1.4295	AG	0.9183	"[""INTERCHROMOSOMAL[chr19--chr3]""]"	chr19:48635580-chr3:42210102	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
DBP--TRAK1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	DBP^ENSG00000105516.11	chr19:48635580:-	TRAK1^ENSG00000182606.17	chr3:42210090:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1306:47501:16189,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1301:5838:13415	.	NO_LDAS	0.0068	GT	1.4295	AG	0.9183	"[""INTERCHROMOSOMAL[chr19--chr3]""]"	chr19:48635580-chr3:42210090	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
CTDSPL--CDCP1	2	0	2.0	0.0	ONLY_REF_SPLICE	CTDSPL^ENSG00000144677.15	chr3:37862278:+	CDCP1^ENSG00000163814.8	chr3:45118621:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1383:36434:18123,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2111:18361:21346	.	YES_LDAS	0.0068	GT	1.4566	AG	1.8062	"[""INTRACHROMOSOMAL[chr3:7.10Mb]""]"	chr3:37862278-chr3:45118621	False			0	Read count too low: 2 < 8	FAIL	2
CRACDL--PTPRA	2	0	2.0	0.0	ONLY_REF_SPLICE	CRACDL^ENSG00000196872.12	chr2:98935938:-	PTPRA^ENSG00000132670.20	chr20:2923207:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1461:11719:14690,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1440:25399:10612	.	NO_LDAS	0.0068	GT	1.8295	AG	1.7232	"[""INTERCHROMOSOMAL[chr2--chr20]""]"	chr2:98935938-chr20:2923207	False			0	Read count too low: 2 < 8	FAIL	2
CPT1A--AL133342.1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	CPT1A^ENSG00000110090.13	chr11:68793315:-	AL133342.1^ENSG00000278231.1	chr20:48822017:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1147:6048:7950,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2316:37987:19889	.	NO_LDAS	0.0068	GT	1.4295	AG	1.8892	"[""INTERCHROMOSOMAL[chr11--chr20]""]"	chr11:68793315-chr20:48822017	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
CNTNAP3--TTC39B	2	0	1.0	0.0	INCL_NON_REF_SPLICE	CNTNAP3^ENSG00000106714.17	chr9:39132932:-	TTC39B^ENSG00000155158.20	chr9:15168646:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1224:27762:1532,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2101:31338:4923	.	YES_LDAS	0.0034	GT	1.7819	AG	1.8892	"[""INTRACHROMOSOMAL[chr9:23.77Mb]""]"	chr9:39132932-chr9:15168646	False			0	Read count too low: 2 < 8	FAIL	2
CNTNAP3--LINC02501	2	0	1.0	0.0	ONLY_REF_SPLICE	CNTNAP3^ENSG00000106714.17	chr9:39132932:-	LINC02501^ENSG00000249882.2	chr4:31522291:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1224:27762:1532,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2101:31338:4923	.	YES_LDAS	0.0034	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chr9--chr4]""]"	chr9:39132932-chr4:31522291	False			0	Read count too low: 2 < 8	FAIL	2
CHFR--ANKLE2	2	0	2.0	0.0	ONLY_REF_SPLICE	CHFR^ENSG00000072609.18	chr12:132945621:-	ANKLE2^ENSG00000176915.15	chr12:132730270:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1322:39306:11523,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2175:11040:1995	.	YES_LDAS	0.0068	GT	1.9656	AG	1.9329	"[""INTRACHROMOSOMAL[chr12:0.06Mb]"",""NEIGHBORS[60355]""]"	chr12:132945621-chr12:132730270	False			0	Read count too low: 2 < 8	FAIL	2
CDC42EP1--SPSB3	2	0	2.0	0.0	INCL_NON_REF_SPLICE	CDC42EP1^ENSG00000128283.7	chr22:37568362:+	SPSB3^ENSG00000162032.16	chr16:1778080:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1274:47372:14648,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2377:24971:15194	.	NO_LDAS	0.0068	GT	1.7465	AG	1.2419	"[""INTERCHROMOSOMAL[chr22--chr16]""]"	chr22:37568362-chr16:1778080	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
CBLC--VASP	2	0	2.0	0.0	ONLY_REF_SPLICE	CBLC^ENSG00000142273.13	chr19:44794281:+	VASP^ENSG00000125753.14	chr19:45517663:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1242:14850:12042,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2417:4171:27035	.	NO_LDAS	0.0068	GT	1.8256	AG	1.9656	"[""INTRACHROMOSOMAL[chr19:0.71Mb]""]"	chr19:44794281-chr19:45517663	False			0	Read count too low: 2 < 8	FAIL	2
CASZ1--AC068867.1	2	0	2.0	0.0	ONLY_REF_SPLICE	CASZ1^ENSG00000130940.15	chr1:10693874:-	AC068867.1^ENSG00000259217.2	chr15:35774801:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1324:18135:13135,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2392:3524:18459	.	NO_LDAS	0.0068	GT	1.9329	AG	1.7056	"[""INTERCHROMOSOMAL[chr1--chr15]""]"	chr1:10693874-chr15:35774801	False			0	Read count too low: 2 < 8	FAIL	2
CACUL1--PREX1	2	0	0.4	0.0	INCL_NON_REF_SPLICE	CACUL1^ENSG00000151893.15	chr10:118754599:-	PREX1^ENSG00000124126.14	chr20:48636609:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2124:29881:8959,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1275:42081:5428	.	NO_LDAS	0.0014	GC	1.6402	AG	1.7056	"[""INTERCHROMOSOMAL[chr10--chr20]""]"	chr10:118754599-chr20:48636609	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
CA12--TRAPPC8	2	0	2.0	0.0	INCL_NON_REF_SPLICE	CA12^ENSG00000074410.14	chr15:63346530:-	TRAPPC8^ENSG00000153339.15	chr18:31916424:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2122:11428:23238,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1221:11986:18039	.	NO_LDAS	0.0068	GT	1.9656	AG	1.9899	"[""INTERCHROMOSOMAL[chr15--chr18]""]"	chr15:63346530-chr18:31916424	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
C9orf92--BNC2	2	0	2.0	0.0	ONLY_REF_SPLICE	C9orf92^ENSG00000205549.10	chr9:16400420:-	BNC2^ENSG00000173068.18	chr9:16437524:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1288:25586:16175,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1497:4390:7179	.	YES_LDAS	0.0068	GT	1.8892	AG	1.9219	"[""INTRACHROMOSOMAL[chr9:0.00Mb]"",""NEIGHBORS_OVERLAP:-:-:[1487]""]"	chr9:16400420-chr9:16437524	False			0	Read count too low: 2 < 8	FAIL	2
C22orf34--UPK3BL1	2	0	1.0	0.0	ONLY_REF_SPLICE	C22orf34^ENSG00000188511.12	chr22:49657405:-	UPK3BL1^ENSG00000267368.1	chr7:102640773:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1113:23676:8160,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2237:12965:6927	.	YES_LDAS	0.0034	GT	1.9086	AG	1.7465	"[""INTERCHROMOSOMAL[chr22--chr7]""]"	chr22:49657405-chr7:102640773	False			0	Read count too low: 2 < 8	FAIL	2
BMS1P1--PTPN20	2	0	0.67	0.0	ONLY_REF_SPLICE	BMS1P1^ENSG00000204177.10	chr10:46798168:+	PTPN20^ENSG00000204179.10	chr10:46940623:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1108:14688:23616,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1324:16646:26362	.	YES_LDAS	0.0023	GT	1.7465	AG	1.8062	"[""INTRACHROMOSOMAL[chr10:0.10Mb]"",""NEIGHBORS[99407]""]"	chr10:46798168-chr10:46940623	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
BCL11B--SMG1P1	2	0	0.67	0.0	ONLY_REF_SPLICE	BCL11B^ENSG00000127152.18	chr14:99257471:-	SMG1P1^ENSG00000237296.9	chr16:22451620:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1281:32600:14452,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1350:30690:2709	.	NO_LDAS	0.0023	GT	1.8323	AG	1.9656	"[""INTERCHROMOSOMAL[chr14--chr16]""]"	chr14:99257471-chr16:22451620	False			0	Read count too low: 2 < 8	FAIL	2
BAIAP2L1--AC008494.3	2	0	2.0	0.0	INCL_NON_REF_SPLICE	BAIAP2L1^ENSG00000006453.14	chr7:98320275:-	AC008494.3^ENSG00000271797.1	chr5:115262616:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1221:25488:5750,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1202:12633:7726	.	NO_LDAS	0.0068	GT	1.8323	AG	1.2419	"[""INTERCHROMOSOMAL[chr7--chr5]""]"	chr7:98320275-chr5:115262616	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
B2M--GEMIN4	2	0	2.0	0.0	ONLY_REF_SPLICE	B2M^ENSG00000166710.21	chr15:44711613:+	GEMIN4^ENSG00000179409.11	chr17:748032:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1292:20683:27918,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1165:35779:29235	.	NO_LDAS	0.0068	GT	1.9656	AG	1.9329	"[""INTERCHROMOSOMAL[chr15--chr17]""]"	chr15:44711613-chr17:748032	False			0	Read count too low: 2 < 8	FAIL	2
ATP9B--CEP192	2	0	2.0	0.0	ONLY_REF_SPLICE	ATP9B^ENSG00000166377.20	chr18:79069529:+	CEP192^ENSG00000101639.18	chr18:13048859:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1277:22034:19328,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2404:7771:20435	.	NO_LDAS	0.0068	GT	1.5656	AG	1.8892	"[""INTRACHROMOSOMAL[chr18:65.94Mb]""]"	chr18:79069529-chr18:13048859	False			0	Read count too low: 2 < 8	FAIL	2
ATP5MG--KMT2A	2	0	2.0	0.0	ONLY_REF_SPLICE	ATP5MG^ENSG00000167283.8	chr11:118401717:+	KMT2A^ENSG00000118058.23	chr11:118468775:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1119:1154:8244,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2294:46409:8244	.	YES_LDAS	0.0068	GT	1.7968	AG	1.9086	"[""INTRACHROMOSOMAL[chr11:0.00Mb]"",""NEIGHBORS[4994]""]"	chr11:118401717-chr11:118468775	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
ART4--ST7L	2	0	0.5	0.0	INCL_NON_REF_SPLICE	ART4^ENSG00000111339.12	chr12:14826917:-	ST7L^ENSG00000007341.19	chr1:112523706:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1436:13531:23266,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1318:36580:19776	.	NO_LDAS	0.0017	GC	1.3383	AG	1.5301	"[""INTERCHROMOSOMAL[chr12--chr1]""]"	chr12:14826917-chr1:112523706	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
ANO5--DNM3	2	0	2.0	0.0	ONLY_REF_SPLICE	ANO5^ENSG00000171714.12	chr11:22193532:+	DNM3^ENSG00000197959.14	chr1:172131175:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1131:43084:18684,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1270:45244:28618	.	YES_LDAS	0.0068	GT	1.6729	AG	1.8295	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:22193532-chr1:172131175	False			0	Read count too low: 2 < 8	FAIL	2
AHR--EPHA4	2	0	1.0	0.0	INCL_NON_REF_SPLICE	AHR^ENSG00000106546.14	chr7:17299329:+	EPHA4^ENSG00000116106.12	chr2:221446166:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1113:14454:18221,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1349:29784:3859	.	NO_LDAS	0.0034	GT	1.8256	AG	1.5546	"[""INTERCHROMOSOMAL[chr7--chr2]""]"	chr7:17299329-chr2:221446166	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
AGPS--PIKFYVE	2	0	2.0	0.0	ONLY_REF_SPLICE	AGPS^ENSG00000018510.18	chr2:177393049:+	PIKFYVE^ENSG00000115020.17	chr2:208312236:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1419:20416:15236,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2212:22503:25409	.	NO_LDAS	0.0068	GT	1.7819	AG	1.6729	"[""INTRACHROMOSOMAL[chr2:30.70Mb]""]"	chr2:177393049-chr2:208312236	False			0	Read count too low: 2 < 8	FAIL	2
ACCS--EXT2	2	0	2.0	0.0	INCL_NON_REF_SPLICE	ACCS^ENSG00000110455.14	chr11:44083788:+	EXT2^ENSG00000151348.15	chr11:44107683:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1108:28231:8959,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1364:3055:17310	.	YES_LDAS	0.0068	GT	1.8062	AG	1.3996	"[""Babiceanu_Normal"",""INTRACHROMOSOMAL[chr11:0.01Mb]"",""NEIGHBORS[11436]""]"	chr11:44083788-chr11:44107683	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	2
ACBD3--CEP104	2	0	2.0	0.0	INCL_NON_REF_SPLICE	ACBD3^ENSG00000182827.9	chr1:226186422:-	CEP104^ENSG00000116198.14	chr1:3857103:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1494:28878:20393,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2161:21824:11201	.	NO_LDAS	0.0068	GT	1.8892	AG	1.231	"[""INTRACHROMOSOMAL[chr1:222.29Mb]""]"	chr1:226186422-chr1:3857103	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
AC211476.4--CCDC146	2	0	0.18	0.0	ONLY_REF_SPLICE	AC211476.4^ENSG00000277125.1	chr7:73069531:+	CCDC146^ENSG00000135205.15	chr7:77236947:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1143:22414:21528,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1313:33740:11355	.	YES_LDAS	0.0006	GT	1.4566	AG	1.9329	"[""INTRACHROMOSOMAL[chr7:4.05Mb]""]"	chr7:73069531-chr7:77236947	True		aih_curated_blacklist score(5)	0	aih_curated_blacklist score(5)	FAIL	2
AC127502.2--MRPL17	2	0	1.0	0.0	INCL_NON_REF_SPLICE	AC127502.2^ENSG00000270055.1	chr15:30489369:+	MRPL17^ENSG00000158042.9	chr11:6682230:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2219:5611:21738,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2238:49912:9828	.	NO_LDAS	0.0034	GT	1.3996	AG	1.6895	"[""INTERCHROMOSOMAL[chr15--chr11]""]"	chr15:30489369-chr11:6682230	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
AC087427.1--SPECC1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	AC087427.1^ENSG00000286363.1	chr3:2141251:+	SPECC1^ENSG00000128487.18	chr17:20110427:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1297:19817:5064,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2217:7480:18109	.	YES_LDAS	0.0068	GT	1.8892	AG	1.8256	"[""INTERCHROMOSOMAL[chr3--chr17]""]"	chr3:2141251-chr17:20110427	False			0	Read count too low: 2 < 8	FAIL	2
AC034236.1--PLA2R1	2	0	1.0	0.0	INCL_NON_REF_SPLICE	AC034236.1^ENSG00000185641.6	chr5:116052187:-	PLA2R1^ENSG00000153246.13	chr2:160016709:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1104:45624:17899,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1145:32543:16484	.	NO_LDAS	0.0034	GT	1.3383	AG	1.9086	"[""INTERCHROMOSOMAL[chr5--chr2]""]"	chr5:116052187-chr2:160016709	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	2
AC015631.1--SPTLC3	2	0	2.0	0.0	ONLY_REF_SPLICE	AC015631.1^ENSG00000251199.6	chr4:134103369:-	SPTLC3^ENSG00000172296.13	chr20:13154003:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1439:2092:22201,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1498:43456:5932	.	NO_LDAS	0.0068	GT	1.9086	AG	1.8892	"[""INTERCHROMOSOMAL[chr4--chr20]""]"	chr4:134103369-chr20:13154003	False			0	Read count too low: 2 < 8	FAIL	2
AC008740.1--CRYM-AS1	2	0	2.0	0.0	INCL_NON_REF_SPLICE	AC008740.1^ENSG00000257403.2	chr16:21352138:+	CRYM-AS1^ENSG00000189149.12	chr16:21338921:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1168:33595:3060,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1185:21233:10430	.	YES_LDAS	0.0068	GT	1.7232	AG	1.9656	"[""INTRACHROMOSOMAL[chr16:0.01Mb]"",""LOCAL_REARRANGEMENT:+:[8102]""]"	chr16:21352138-chr16:21338921	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	2
AC007566.1--SLC38A2	2	0	2.0	0.0	INCL_NON_REF_SPLICE	AC007566.1^ENSG00000244055.2	chr7:92492286:+	SLC38A2^ENSG00000134294.14	chr12:46362381:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2237:48901:8104,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2151:23684:24653	.	YES_LDAS	0.0068	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr7--chr12]""]"	chr7:92492286-chr12:46362381	False			0	Read count too low: 2 < 8	FAIL	2
AC006019.2--EIF3H	2	0	1.0	0.0	INCL_NON_REF_SPLICE	AC006019.2^ENSG00000233363.1	chr7:154095749:-	EIF3H^ENSG00000147677.11	chr8:116646537:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1424:12601:24513,&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2218:24259:28002	.	NO_LDAS	0.0034	GT	1.5219	AG	1.9329	"[""INTERCHROMOSOMAL[chr7--chr8]""]"	chr7:154095749-chr8:116646537	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	2
ZSWIM4--GSDMC	1	0	0.2	0.0	INCL_NON_REF_SPLICE	ZSWIM4^ENSG00000132003.9	chr19:13831061:+	GSDMC^ENSG00000147697.9	chr8:129751840:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1279:29808:16428	.	NO_LDAS	0.0007	GT	1.6729	AG	1.3753	"[""INTERCHROMOSOMAL[chr19--chr8]""]"	chr19:13831061-chr8:129751840	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZSWIM4--AC135048.4	1	0	0.2	0.0	INCL_NON_REF_SPLICE	ZSWIM4^ENSG00000132003.9	chr19:13831065:+	AC135048.4^ENSG00000279196.1	chr16:30985899:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1279:29808:16428	.	NO_LDAS	0.0007	GT	1.6049	AG	1.7232	"[""INTERCHROMOSOMAL[chr19--chr16]""]"	chr19:13831065-chr16:30985899	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZRSR2--ADH1B	1	0	1.0	0.0	ONLY_REF_SPLICE	ZRSR2^ENSG00000169249.13	chrX:15804197:+	ADH1B^ENSG00000196616.14	chr4:99318886:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1114:13111:15979	.	YES_LDAS	0.0034	GT	0.8366	AG	1.7232	"[""INTERCHROMOSOMAL[chrX--chr4]""]"	chrX:15804197-chr4:99318886	False			0	Read count too low: 1 < 8	FAIL	1
ZNRF2P1--FKBP9	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNRF2P1^ENSG00000237004.4	chr7:32729009:+	FKBP9^ENSG00000122642.11	chr7:32974617:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1349:48326:28240	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTRACHROMOSOMAL[chr7:0.20Mb]""]"	chr7:32729009-chr7:32974617	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
ZNF81--CLCN5	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF81^ENSG00000197779.15	chrX:47888125:+	CLCN5^ENSG00000171365.17	chrX:50042316:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1467:24987:24471	.	NO_LDAS	0.0034	GT	1.9329	AG	1.9656	"[""INTRACHROMOSOMAL[chrX:1.92Mb]""]"	chrX:47888125-chrX:50042316	False			0	Read count too low: 1 < 8	FAIL	1
ZNF747--USP1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ZNF747^ENSG00000169955.7	chr16:30534910:-	USP1^ENSG00000162607.13	chr1:62436432:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1244:3581:10374	.	NO_LDAS	0.0017	GT	1.2366	AG	1.3383	"[""INTERCHROMOSOMAL[chr16--chr1]""]"	chr16:30534910-chr1:62436432	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF74--KIAA2026	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF74^ENSG00000185252.19	chr22:20394377:+	KIAA2026^ENSG00000183354.12	chr9:6007782:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1117:3993:10781	.	NO_LDAS	0.0034	GT	1.6729	AG	1.7056	"[""INTERCHROMOSOMAL[chr22--chr9]""]"	chr22:20394377-chr9:6007782	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF699--ZNF12	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ZNF699^ENSG00000196110.8	chr19:9302454:-	ZNF12^ENSG00000164631.19	chr7:6697757:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1136:22616:27511	.	YES_LDAS	0.0017	GC	1.7819	AG	1.9656	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr19--chr7]""]"	chr19:9302454-chr7:6697757	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZNF675--NEK4	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF675^ENSG00000197372.10	chr19:23662114:-	NEK4^ENSG00000114904.13	chr3:52749829:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2258:18790:9618	.	NO_LDAS	0.0034	GT	1.9086	AG	1.8256	"[""INTERCHROMOSOMAL[chr19--chr3]""]"	chr19:23662114-chr3:52749829	False			0	Read count too low: 1 < 8	FAIL	1
ZNF622--RAP2B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF622^ENSG00000173545.5	chr5:16453056:-	RAP2B^ENSG00000181467.5	chr3:153162649:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1210:6841:3382	.	NO_LDAS	0.0034	GT	1.7465	AG	1.2729	"[""INTERCHROMOSOMAL[chr5--chr3]""]"	chr5:16453056-chr3:153162649	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF609--SLC5A10	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF609^ENSG00000180357.9	chr15:64681387:+	SLC5A10^ENSG00000154025.16	chr17:19013384:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1293:23603:27735	.	NO_LDAS	0.0034	GT	1.6895	AG	1.9656	"[""INTERCHROMOSOMAL[chr15--chr17]""]"	chr15:64681387-chr17:19013384	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF605--ZNF451	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF605^ENSG00000196458.11	chr12:132933035:-	ZNF451^ENSG00000112200.17	chr6:57161084:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1107:39104:8146	.	YES_LDAS	0.0034	GT	1.6402	AG	1.8256	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr12--chr6]""]"	chr12:132933035-chr6:57161084	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZNF605--IP6K2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF605^ENSG00000196458.11	chr12:132923783:-	IP6K2^ENSG00000068745.15	chr3:48691482:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1407:51069:14606	.	NO_LDAS	0.0034	GC	1.2729	AG	1.8295	"[""INTERCHROMOSOMAL[chr12--chr3]""]"	chr12:132923783-chr3:48691482	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF569--AC020904.2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ZNF569^ENSG00000196437.12	chr19:37425664:-	AC020904.2^ENSG00000273654.1	chr19:18030610:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1272:33756:7572	.	YES_LDAS	0.0017	GT	1.9329	AG	1.8892	"[""INTRACHROMOSOMAL[chr19:19.38Mb]""]"	chr19:37425664-chr19:18030610	False			0	Read count too low: 1 < 8	FAIL	1
ZNF551--TRPC4AP	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF551^ENSG00000204519.11	chr19:57682244:+	TRPC4AP^ENSG00000100991.12	chr20:35021356:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1116:41086:20883	.	YES_LDAS	0.0034	GT	1.8892	AG	1.7056	"[""INTERCHROMOSOMAL[chr19--chr20]""]"	chr19:57682244-chr20:35021356	False			0	Read count too low: 1 < 8	FAIL	1
ZNF544--ZNF606	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF544^ENSG00000198131.14	chr19:58246794:+	ZNF606^ENSG00000166704.11	chr19:57988721:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1189:28045:23097	.	YES_LDAS	0.0034	GT	1.5219	AG	1.9656	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr19:0.23Mb]""]"	chr19:58246794-chr19:57988721	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZNF443--ZNF208	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF443^ENSG00000180855.16	chr19:12440912:-	ZNF208^ENSG00000160321.15	chr19:21974807:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1392:51571:7320	.	NO_LDAS	0.0034	GT	1.6895	AG	1.5546	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr19:9.49Mb]""]"	chr19:12440912-chr19:21974807	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZNF44--SCAMP4	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF44^ENSG00000197857.15	chr19:12294692:-	SCAMP4^ENSG00000227500.10	chr19:1917694:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1207:12658:23209	.	YES_LDAS	0.0034	GT	1.8256	AG	1.5546	"[""INTRACHROMOSOMAL[chr19:10.30Mb]""]"	chr19:12294692-chr19:1917694	False			0	Read count too low: 1 < 8	FAIL	1
ZNF428--UCK2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF428^ENSG00000131116.12	chr19:43607934:-	UCK2^ENSG00000143179.16	chr1:165902794:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2246:22738:28870	.	NO_LDAS	0.0034	GT	0.8366	AG	1.6402	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:43607934-chr1:165902794	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF385B--DIAPH2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF385B^ENSG00000144331.20	chr2:179483351:-	DIAPH2^ENSG00000147202.18	chrX:96735758:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1325:29493:19440	.	NO_LDAS	0.0034	GT	1.5546	AG	1.2419	"[""INTERCHROMOSOMAL[chr2--chrX]""]"	chr2:179483351-chrX:96735758	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF366--ARHGEF28	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF366^ENSG00000178175.12	chr5:72507251:-	ARHGEF28^ENSG00000214944.9	chr5:73832338:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2307:13434:1210	.	NO_LDAS	0.0034	GT	1.9329	AG	1.9086	"[""INTRACHROMOSOMAL[chr5:1.12Mb]""]"	chr5:72507251-chr5:73832338	False			0	Read count too low: 1 < 8	FAIL	1
ZNF362--IKZF5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF362^ENSG00000160094.15	chr1:33281811:+	IKZF5^ENSG00000095574.12	chr10:122996004:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2127:35552:16988	.	NO_LDAS	0.0034	GT	1.5058	AG	1.7968	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr1--chr10]""]"	chr1:33281811-chr10:122996004	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZNF362--GCC1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF362^ENSG00000160094.15	chr1:33295015:+	GCC1^ENSG00000179562.3	chr7:127584865:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1233:16452:6829	.	NO_LDAS	0.0034	GT	1.6729	AG	1.6895	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:33295015-chr7:127584865	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF33A--MTPAP	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF33A^ENSG00000189180.16	chr10:38017386:+	MTPAP^ENSG00000107951.15	chr10:30341640:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1206:49580:19370	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8892	"[""INTRACHROMOSOMAL[chr10:7.64Mb]""]"	chr10:38017386-chr10:30341640	False			0	Read count too low: 1 < 8	FAIL	1
ZNF280D--IL17RA	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF280D^ENSG00000137871.21	chr15:56689041:-	IL17RA^ENSG00000177663.14	chr22:17097062:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2258:19728:1659	.	YES_LDAS	0.0034	GT	1.6049	AG	1.9329	"[""INTERCHROMOSOMAL[chr15--chr22]""]"	chr15:56689041-chr22:17097062	False			0	Read count too low: 1 < 8	FAIL	1
ZNF264--ZNF425	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF264^ENSG00000083844.10	chr19:57191946:+	ZNF425^ENSG00000204947.9	chr7:149118348:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2194:6202:3844	.	NO_LDAS	0.0034	GT	1.5219	AG	1.8892	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr19--chr7]""]"	chr19:57191946-chr7:149118348	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZNF254--RPSAP58	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ZNF254^ENSG00000213096.11	chr19:24106643:+	RPSAP58^ENSG00000225178.5	chr19:23827070:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1459:20505:18473	.	YES_LDAS	0.0017	GT	1.9329	AG	1.9656	"[""INTRACHROMOSOMAL[chr19:0.21Mb]""]"	chr19:24106643-chr19:23827070	False			0	Read count too low: 1 < 8	FAIL	1
ZNF251--TC2N	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF251^ENSG00000198169.9	chr8:144753683:-	TC2N^ENSG00000165929.13	chr14:91813825:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1412:38934:18810	.	YES_LDAS	0.0034	GT	1.7465	AG	1.2867	"[""INTERCHROMOSOMAL[chr8--chr14]""]"	chr8:144753683-chr14:91813825	False			0	Read count too low: 1 < 8	FAIL	1
ZNF205--AC005379.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF205^ENSG00000122386.11	chr16:3120292:+	AC005379.1^ENSG00000267159.2	chr19:928316:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1468:8694:28983	.	NO_LDAS	0.0034	GC	0.8366	AG	1.5546	"[""INTERCHROMOSOMAL[chr16--chr19]""]"	chr16:3120292-chr19:928316	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF185--LINC01808	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZNF185^ENSG00000147394.18	chrX:152970541:+	LINC01808^ENSG00000237992.3	chr2:19519575:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1339:1671:27777	.	NO_LDAS	0.0034	GT	1.9899	AG	1.4256	"[""INTERCHROMOSOMAL[chrX--chr2]""]"	chrX:152970541-chr2:19519575	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF142--RASSF1	1	0	0.14	0.0	INCL_NON_REF_SPLICE	ZNF142^ENSG00000115568.16	chr2:218649279:-	RASSF1^ENSG00000068028.17	chr3:50340778:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2336:9187:9351	.	NO_LDAS	0.0005	GC	1.8892	AG	1.7968	"[""INTERCHROMOSOMAL[chr2--chr3]""]"	chr2:218649279-chr3:50340778	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZNF124--DCAF6	1	0	1.0	0.0	ONLY_REF_SPLICE	ZNF124^ENSG00000196418.12	chr1:247171848:-	DCAF6^ENSG00000143164.15	chr1:167951800:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2238:26484:3102	.	YES_LDAS	0.0034	GT	1.6895	AG	1.4566	"[""INTRACHROMOSOMAL[chr1:79.05Mb]""]"	chr1:247171848-chr1:167951800	False			0	Read count too low: 1 < 8	FAIL	1
ZMYM4--BCL6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZMYM4^ENSG00000146463.12	chr1:35421663:+	BCL6^ENSG00000113916.18	chr3:187729406:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1266:2205:28198	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr3]""]"	chr1:35421663-chr3:187729406	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZKSCAN1--TCTN1	1	0	1.0	0.0	ONLY_REF_SPLICE	ZKSCAN1^ENSG00000106261.17	chr7:100024307:+	TCTN1^ENSG00000204852.17	chr12:110626362:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1204:7302:8497	.	NO_LDAS	0.0034	GT	1.9899	AG	1.8892	"[""INTERCHROMOSOMAL[chr7--chr12]""]"	chr7:100024307-chr12:110626362	False			0	Read count too low: 1 < 8	FAIL	1
ZIM3--ZNF300	1	0	0.5	0.0	ONLY_REF_SPLICE	ZIM3^ENSG00000141946.1	chr19:57138472:-	ZNF300^ENSG00000145908.12	chr5:150898184:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1310:48424:24260	.	YES_LDAS	0.0017	GT	1.8062	AG	1.9656	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr19--chr5]""]"	chr19:57138472-chr5:150898184	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ZFP41--SMIM19	1	0	1.0	0.0	ONLY_REF_SPLICE	ZFP41^ENSG00000181638.20	chr8:143251340:+	SMIM19^ENSG00000176209.12	chr8:42546469:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1158:1704:5218	.	NO_LDAS	0.0034	GT	1.8892	AG	1.6895	"[""INTRACHROMOSOMAL[chr8:100.69Mb]""]"	chr8:143251340-chr8:42546469	False			0	Read count too low: 1 < 8	FAIL	1
ZFAT--OXR1	1	0	1.0	0.0	ONLY_REF_SPLICE	ZFAT^ENSG00000066827.16	chr8:134509619:-	OXR1^ENSG00000164830.19	chr8:106739458:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1254:22600:9576	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8295	"[""INTRACHROMOSOMAL[chr8:27.73Mb]""]"	chr8:134509619-chr8:106739458	False			0	Read count too low: 1 < 8	FAIL	1
ZFAND3--CASC15	1	0	1.0	0.0	ONLY_REF_SPLICE	ZFAND3^ENSG00000156639.12	chr6:38082457:+	CASC15^ENSG00000272168.8	chr6:21909470:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1337:4697:4713	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9329	"[""INTRACHROMOSOMAL[chr6:15.17Mb]""]"	chr6:38082457-chr6:21909470	False			0	Read count too low: 1 < 8	FAIL	1
ZEB1-AS1--RPS6KA4	1	0	1.0	0.0	ONLY_REF_SPLICE	ZEB1-AS1^ENSG00000237036.5	chr10:31309893:-	RPS6KA4^ENSG00000162302.13	chr11:64365301:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1229:12375:11846	.	YES_LDAS	0.0034	GT	1.9329	AG	1.7465	"[""INTERCHROMOSOMAL[chr10--chr11]""]"	chr10:31309893-chr11:64365301	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
ZDHHC17--EIF4E	1	0	0.33	0.0	ONLY_REF_SPLICE	ZDHHC17^ENSG00000186908.15	chr12:76769201:+	EIF4E^ENSG00000151247.13	chr4:98901982:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2113:33295:20197	.	YES_LDAS	0.0011	GT	1.9329	AG	1.6895	"[""INTERCHROMOSOMAL[chr12--chr4]""]"	chr12:76769201-chr4:98901982	False			0	Read count too low: 1 < 8	FAIL	1
ZDHHC14--MMRN1	1	0	1.0	0.0	ONLY_REF_SPLICE	ZDHHC14^ENSG00000175048.17	chr6:157382266:+	MMRN1^ENSG00000138722.10	chr4:89923168:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:44459:9267	.	NO_LDAS	0.0034	GT	1.7056	AG	1.5058	"[""INTERCHROMOSOMAL[chr6--chr4]""]"	chr6:157382266-chr4:89923168	False			0	Read count too low: 1 < 8	FAIL	1
ZCCHC17--SCAF8	1	0	1.0	0.0	ONLY_REF_SPLICE	ZCCHC17^ENSG00000121766.16	chr1:31348974:+	SCAF8^ENSG00000213079.10	chr6:154808070:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1356:3565:6927	.	YES_LDAS	0.0034	GT	0.8366	AG	1.9219	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:31348974-chr6:154808070	False			0	Read count too low: 1 < 8	FAIL	1
ZC3H7B--IP6K1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZC3H7B^ENSG00000100403.12	chr22:41332227:+	IP6K1^ENSG00000176095.12	chr3:49726738:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2189:39719:8903	.	YES_LDAS	0.0034	GT	1.8295	AG	1.3753	"[""INTERCHROMOSOMAL[chr22--chr3]""]"	chr22:41332227-chr3:49726738	False			0	Read count too low: 1 < 8	FAIL	1
ZC3H14--AL591519.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZC3H14^ENSG00000100722.20	chr14:88575940:+	AL591519.1^ENSG00000287683.1	chr6:93674690:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1197:23417:8973	.	NO_LDAS	0.0034	GT	1.8256	AG	1.6402	"[""INTERCHROMOSOMAL[chr14--chr6]""]"	chr14:88575940-chr6:93674690	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZBTB5--LIMD2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ZBTB5^ENSG00000168795.5	chr9:37465348:-	LIMD2^ENSG00000136490.9	chr17:63696112:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1487:41361:10626	.	NO_LDAS	0.0034	GT	1.0389	AG	1.8892	"[""INTERCHROMOSOMAL[chr9--chr17]""]"	chr9:37465348-chr17:63696112	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ZADH2--TSHZ1	1	0	1.0	0.0	ONLY_REF_SPLICE	ZADH2^ENSG00000180011.7	chr18:75208850:-	TSHZ1^ENSG00000179981.11	chr18:75285448:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1219:21120:4181	.	YES_LDAS	0.0034	GT	1.7968	AG	1.8892	"[""ChimerSeq"",""INTRACHROMOSOMAL[chr18:0.00Mb]"",""LOCAL_INVERSION:-:+:[1616]""]"	chr18:75208850-chr18:75285448	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
YPEL3--YPEL1	1	0	1.0	0.0	ONLY_REF_SPLICE	YPEL3^ENSG00000090238.12	chr16:30095103:-	YPEL1^ENSG00000100027.17	chr22:21703478:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1123:40503:16259	.	NO_LDAS	0.0034	GT	1.7819	AG	1.7232	"[""GTEx_recurrent_StarF2019"",""INTERCHROMOSOMAL[chr16--chr22]""]"	chr16:30095103-chr22:21703478	False			0	Excluded annotation pattern: GTEx_recurrent_StarF2019	FAIL	1
YME1L1--SOX7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	YME1L1^ENSG00000136758.19	chr10:27147401:-	SOX7^ENSG00000171056.8	chr8:10725712:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1407:12326:3662	.	NO_LDAS	0.0034	GT	1.6895	AG	1.2419	"[""INTERCHROMOSOMAL[chr10--chr8]""]"	chr10:27147401-chr8:10725712	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
YAF2--RYBP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	YAF2^ENSG00000015153.15	chr12:42238155:-	RYBP^ENSG00000163602.11	chr3:72446621:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1147:13159:22481	.	YES_LDAS	0.0034	GT	1.5656	AG	1.4566	"[""INTERCHROMOSOMAL[chr12--chr3]""]"	chr12:42238155-chr3:72446621	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
XYLT1--RNF135	1	0	1.0	0.0	ONLY_REF_SPLICE	XYLT1^ENSG00000103489.12	chr16:17470434:-	RNF135^ENSG00000181481.14	chr17:30984617:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2248:1493:18221	.	NO_LDAS	0.0034	GT	1.3996	AG	1.6895	"[""INTERCHROMOSOMAL[chr16--chr17]""]"	chr16:17470434-chr17:30984617	False			0	Read count too low: 1 < 8	FAIL	1
XYLB--PLCD1	1	0	1.0	0.0	ONLY_REF_SPLICE	XYLB^ENSG00000093217.11	chr3:38400985:+	PLCD1^ENSG00000187091.14	chr3:38020352:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2211:14025:11593	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9656	"[""INTRACHROMOSOMAL[chr3:0.32Mb]""]"	chr3:38400985-chr3:38020352	False			0	Read count too low: 1 < 8	FAIL	1
XRN2--ESF1	1	0	1.0	0.0	ONLY_REF_SPLICE	XRN2^ENSG00000088930.8	chr20:21303473:+	ESF1^ENSG00000089048.15	chr20:13776270:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1276:37033:4307	.	YES_LDAS	0.0034	GT	1.6895	AG	1.9086	"[""INTRACHROMOSOMAL[chr20:7.52Mb]""]"	chr20:21303473-chr20:13776270	False			0	Read count too low: 1 < 8	FAIL	1
XRCC3--QRICH2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	XRCC3^ENSG00000126215.14	chr14:103697881:-	QRICH2^ENSG00000129646.15	chr17:76282115:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2156:10247:23630	.	NO_LDAS	0.0017	GT	1.8295	AG	1.9656	"[""INTERCHROMOSOMAL[chr14--chr17]""]"	chr14:103697881-chr17:76282115	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
XPR1--RAB11B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	XPR1^ENSG00000143324.14	chr1:180787854:+	RAB11B^ENSG00000185236.12	chr19:8404054:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1141:2052:18067	.	NO_LDAS	0.0034	GT	1.7819	AG	1.7465	"[""INTERCHROMOSOMAL[chr1--chr19]""]"	chr1:180787854-chr19:8404054	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
XDH--FXYD3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	XDH^ENSG00000158125.10	chr2:31398639:-	FXYD3^ENSG00000089356.18	chr19:35122918:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1132:46967:1336	.	NO_LDAS	0.0034	GT	1.9899	AG	1.8295	"[""INTERCHROMOSOMAL[chr2--chr19]""]"	chr2:31398639-chr19:35122918	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
WWP2--MEGF8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	WWP2^ENSG00000198373.13	chr16:69871865:+	MEGF8^ENSG00000105429.13	chr19:42357566:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1114:7407:23896	.	NO_LDAS	0.0034	GT	1.5656	AG	1.7465	"[""INTERCHROMOSOMAL[chr16--chr19]""]"	chr16:69871865-chr19:42357566	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
WWP1--AC010620.2	1	0	0.33	0.0	INCL_NON_REF_SPLICE	WWP1^ENSG00000123124.14	chr8:86461846:+	AC010620.2^ENSG00000269839.1	chr19:21245238:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1239:25230:11327	.	YES_LDAS	0.0011	GT	1.8295	AG	1.9086	"[""INTERCHROMOSOMAL[chr8--chr19]""]"	chr8:86461846-chr19:21245238	False			0	Read count too low: 1 < 8	FAIL	1
WNT4--AL135905.2	1	0	1.0	0.0	ONLY_REF_SPLICE	WNT4^ENSG00000162552.15	chr1:22129616:-	AL135905.2^ENSG00000285976.2	chr6:63576436:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1175:45163:22032	.	YES_LDAS	0.0034	GT	1.7968	AG	1.7968	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:22129616-chr6:63576436	False			0	Read count too low: 1 < 8	FAIL	1
WNT3A--MCM3AP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	WNT3A^ENSG00000154342.6	chr1:228007075:+	MCM3AP^ENSG00000160294.11	chr21:46243497:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1341:38465:21388	.	NO_LDAS	0.0034	GC	0.8366	AG	1.5546	"[""INTERCHROMOSOMAL[chr1--chr21]""]"	chr1:228007075-chr21:46243497	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
WDTC1--KATNAL2	1	0	1.0	0.0	ONLY_REF_SPLICE	WDTC1^ENSG00000142784.16	chr1:27263235:+	KATNAL2^ENSG00000167216.17	chr18:46946057:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1211:10457:7039	.	YES_LDAS	0.0034	GT	1.7819	AG	1.8062	"[""INTERCHROMOSOMAL[chr1--chr18]""]"	chr1:27263235-chr18:46946057	False			0	Read count too low: 1 < 8	FAIL	1
WDR83--SLC2A1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	WDR83^ENSG00000123154.12	chr19:12668512:+	SLC2A1^ENSG00000117394.24	chr1:42927150:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2179:47429:21584	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9086	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:12668512-chr1:42927150	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
WDR75--CCAR1	1	0	1.0	0.0	ONLY_REF_SPLICE	WDR75^ENSG00000115368.10	chr2:189455444:+	CCAR1^ENSG00000060339.14	chr10:68736876:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1225:1858:17058	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8256	"[""INTERCHROMOSOMAL[chr2--chr10]""]"	chr2:189455444-chr10:68736876	False			0	Read count too low: 1 < 8	FAIL	1
WDR5--SLC45A4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	WDR5^ENSG00000196363.10	chr9:134158871:+	SLC45A4^ENSG00000022567.10	chr8:141212162:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2440:12771:11411	.	NO_LDAS	0.0034	GT	1.1033	AG	1.1033	"[""INTERCHROMOSOMAL[chr9--chr8]""]"	chr9:134158871-chr8:141212162	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
WDR48--LAMA4	1	0	0.33	0.0	INCL_NON_REF_SPLICE	WDR48^ENSG00000114742.14	chr3:39095488:+	LAMA4^ENSG00000112769.20	chr6:112148259:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2101:32591:15363	.	NO_LDAS	0.0011	GT	1.7465	AG	1.7232	"[""INTERCHROMOSOMAL[chr3--chr6]""]"	chr3:39095488-chr6:112148259	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
WDR27--TMEM181	1	0	1.0	0.0	ONLY_REF_SPLICE	WDR27^ENSG00000184465.16	chr6:169672255:-	TMEM181^ENSG00000146433.9	chr6:158573420:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1130:38060:19959	.	YES_LDAS	0.0034	GT	1.8295	AG	1.7056	"[""INTRACHROMOSOMAL[chr6:10.82Mb]""]"	chr6:169672255-chr6:158573420	False			0	Read count too low: 1 < 8	FAIL	1
WDR13--LINC00898	1	0	1.0	0.0	INCL_NON_REF_SPLICE	WDR13^ENSG00000101940.18	chrX:48597725:+	LINC00898^ENSG00000205634.7	chr22:47629776:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1196:48181:20253	.	NO_LDAS	0.0034	GT	1.1033	AG	1.4256	"[""INTERCHROMOSOMAL[chrX--chr22]""]"	chrX:48597725-chr22:47629776	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
WDR1--VEGFA	1	0	1.0	0.0	INCL_NON_REF_SPLICE	WDR1^ENSG00000071127.17	chr4:10116282:-	VEGFA^ENSG00000112715.25	chr6:43771175:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1407:7965:27301	.	NO_LDAS	0.0034	GT	1.3383	AG	1.3996	"[""INTERCHROMOSOMAL[chr4--chr6]""]"	chr4:10116282-chr6:43771175	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
WDFY2--AC124319.1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	WDFY2^ENSG00000139668.9	chr13:51584752:+	AC124319.1^ENSG00000262979.1	chr17:80316556:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1189:40584:22537	.	NO_LDAS	0.0017	GT	1.5546	AG	1.5058	"[""INTERCHROMOSOMAL[chr13--chr17]""]"	chr13:51584752-chr17:80316556	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
WASH5P--WASH4P	1	0	0.5	0.0	ONLY_REF_SPLICE	WASH5P^ENSG00000282458.1	chr19:66346:-	WASH4P^ENSG00000234769.7	chr16:17750:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2172:5191:8623	.	YES_LDAS	0.0017	GT	1.9656	AG	1.8256	"[""GTEx_recurrent_StarF2019"",""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr19--chr16]""]"	chr19:66346-chr16:17750	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
WASH2P--ELAC2	1	0	0.12	0.0	ONLY_REF_SPLICE	WASH2P^ENSG00000146556.14	chr2:113598466:+	ELAC2^ENSG00000006744.19	chr17:12995812:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1190:11833:28814	.	NO_LDAS	0.0004	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr2--chr17]""]"	chr2:113598466-chr17:12995812	False			0	Read count too low: 1 < 8	FAIL	1
WARS1--SLC6A1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	WARS1^ENSG00000140105.18	chr14:100376056:-	SLC6A1^ENSG00000157103.12	chr3:10992848:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2213:21427:9029	.	NO_LDAS	0.0034	GT	1.1033	AG	1.231	"[""INTERCHROMOSOMAL[chr14--chr3]""]"	chr14:100376056-chr3:10992848	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
VPS52--PNPLA8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	VPS52^ENSG00000223501.9	chr6:33269490:-	PNPLA8^ENSG00000135241.17	chr7:108526282:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1183:35674:12966	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8323	"[""INTERCHROMOSOMAL[chr6--chr7]""]"	chr6:33269490-chr7:108526282	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
VPS51--AC068587.1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	VPS51^ENSG00000149823.9	chr11:65096463:+	AC068587.1^ENSG00000254581.1	chr8:12676172:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1154:22608:23462	.	NO_LDAS	0.0017	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr11--chr8]""]"	chr11:65096463-chr8:12676172	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
VPS45--PLEKHO1	1	0	1.0	0.0	ONLY_REF_SPLICE	VPS45^ENSG00000136631.15	chr1:150110627:+	PLEKHO1^ENSG00000023902.14	chr1:150150912:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2481:20918:11930	.	YES_LDAS	0.0034	GT	1.4566	AG	1.8892	"[""Babiceanu_Normal"",""INTRACHROMOSOMAL[chr1:0.00Mb]"",""NEIGHBORS[3854]""]"	chr1:150110627-chr1:150150912	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
VPS26C--RAPGEF2	1	0	1.0	0.0	ONLY_REF_SPLICE	VPS26C^ENSG00000157538.14	chr21:37267238:-	RAPGEF2^ENSG00000109756.9	chr4:159193200:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1141:33117:14984	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8256	"[""INTERCHROMOSOMAL[chr21--chr4]""]"	chr21:37267238-chr4:159193200	False			0	Read count too low: 1 < 8	FAIL	1
VPS13C--RORA	1	0	1.0	0.0	ONLY_REF_SPLICE	VPS13C^ENSG00000129003.19	chr15:62060275:-	RORA^ENSG00000069667.16	chr15:60511621:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1349:32171:15559	.	NO_LDAS	0.0034	GT	1.6729	AG	1.9656	"[""INTRACHROMOSOMAL[chr15:0.62Mb]""]"	chr15:62060275-chr15:60511621	False			0	Read count too low: 1 < 8	FAIL	1
VPS13C--AL592146.2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	VPS13C^ENSG00000129003.19	chr15:61929517:-	AL592146.2^ENSG00000286572.1	chr1:204064609:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1260:42704:3816	.	NO_LDAS	0.0017	GT	1.8256	AG	0.971	"[""INTERCHROMOSOMAL[chr15--chr1]""]"	chr15:61929517-chr1:204064609	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
VDAC1--FAT2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	VDAC1^ENSG00000213585.11	chr5:134004647:-	FAT2^ENSG00000086570.12	chr5:151568951:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1165:12981:18557	.	NO_LDAS	0.0034	GT	1.9219	AG	1.5628	"[""INTRACHROMOSOMAL[chr5:17.50Mb]""]"	chr5:134004647-chr5:151568951	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
VCL--TCF12	1	0	1.0	0.0	ONLY_REF_SPLICE	VCL^ENSG00000035403.18	chr10:73998375:+	TCF12^ENSG00000140262.18	chr15:57192158:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2264:18402:28002	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr10--chr15]""]"	chr10:73998375-chr15:57192158	False			0	Read count too low: 1 < 8	FAIL	1
VAV3--NEK1	1	0	1.0	0.0	ONLY_REF_SPLICE	VAV3^ENSG00000134215.16	chr1:107683488:-	NEK1^ENSG00000137601.17	chr4:169577079:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1196:11371:12210	.	YES_LDAS	0.0034	GT	1.9086	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr4]""]"	chr1:107683488-chr4:169577079	False			0	Read count too low: 1 < 8	FAIL	1
VAV3--DOCK7	1	0	1.0	0.0	ONLY_REF_SPLICE	VAV3^ENSG00000134215.16	chr1:107683488:-	DOCK7^ENSG00000116641.18	chr1:62586624:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:27212:19216	.	YES_LDAS	0.0034	GT	1.9086	AG	1.5656	"[""INTRACHROMOSOMAL[chr1:44.88Mb]""]"	chr1:107683488-chr1:62586624	False			0	Read count too low: 1 < 8	FAIL	1
VASH2--DUS1L	1	0	0.25	0.0	INCL_NON_REF_SPLICE	VASH2^ENSG00000143494.15	chr1:212951250:+	DUS1L^ENSG00000169718.18	chr17:82058890:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1110:40649:1490	.	NO_LDAS	0.0009	GT	1.053	AG	1.3996	"[""INTERCHROMOSOMAL[chr1--chr17]""]"	chr1:212951250-chr17:82058890	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
VAMP8--VAMP5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	VAMP8^ENSG00000118640.11	chr2:85581876:+	VAMP5^ENSG00000168899.5	chr2:85591725:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2164:22811:18515	.	YES_LDAS	0.0034	GT	1.9899	AG	1.7819	"[""ConjoinG"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr2:0.00Mb]"",""NEIGHBORS[2400]""]"	chr2:85581876-chr2:85591725	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
USP8--SHROOM3	1	0	1.0	0.0	ONLY_REF_SPLICE	USP8^ENSG00000138592.14	chr15:50424514:+	SHROOM3^ENSG00000138771.16	chr4:76778809:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1314:32996:8581	.	YES_LDAS	0.0034	GT	1.5628	AG	1.9656	"[""INTERCHROMOSOMAL[chr15--chr4]""]"	chr15:50424514-chr4:76778809	False			0	Read count too low: 1 < 8	FAIL	1
USP28--CWF19L2	1	0	1.0	0.0	ONLY_REF_SPLICE	USP28^ENSG00000048028.11	chr11:113875445:-	CWF19L2^ENSG00000152404.15	chr11:107392895:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1347:42477:25816	.	YES_LDAS	0.0034	GT	1.7056	AG	1.6729	"[""INTRACHROMOSOMAL[chr11:6.34Mb]""]"	chr11:113875445-chr11:107392895	False			0	Read count too low: 1 < 8	FAIL	1
USP15--MCM9	1	0	1.0	0.0	ONLY_REF_SPLICE	USP15^ENSG00000135655.16	chr12:62260503:+	MCM9^ENSG00000111877.18	chr6:118856545:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1326:37162:19552	.	YES_LDAS	0.0034	GT	1.7819	AG	1.9656	"[""INTERCHROMOSOMAL[chr12--chr6]""]"	chr12:62260503-chr6:118856545	False			0	Read count too low: 1 < 8	FAIL	1
USF3--ZNF142	1	0	0.5	0.0	INCL_NON_REF_SPLICE	USF3^ENSG00000176542.10	chr3:113670141:-	ZNF142^ENSG00000115568.16	chr2:218658876:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1287:16420:24260	.	NO_LDAS	0.0017	GT	1.9899	AG	1.7232	"[""INTERCHROMOSOMAL[chr3--chr2]""]"	chr3:113670141-chr2:218658876	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
USB1--FAM156A	1	0	0.5	0.0	INCL_NON_REF_SPLICE	USB1^ENSG00000103005.12	chr16:58020670:+	FAM156A^ENSG00000268350.7	chrX:52948011:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:20044:14620	.	NO_LDAS	0.0017	GT	0.9968	AG	1.4295	"[""INTERCHROMOSOMAL[chr16--chrX]""]"	chr16:58020670-chrX:52948011	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
UQCRB--AL390964.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	UQCRB^ENSG00000156467.10	chr8:96231774:-	AL390964.1^ENSG00000277047.5	chr13:54984962:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2450:26726:23420	.	NO_LDAS	0.0034	GT	1.7232	AG	0.9183	"[""INTERCHROMOSOMAL[chr8--chr13]""]"	chr8:96231774-chr13:54984962	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
UNC13B--DCAF10	1	0	1.0	0.0	ONLY_REF_SPLICE	UNC13B^ENSG00000198722.14	chr9:35397310:+	DCAF10^ENSG00000122741.16	chr9:37842089:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1376:22883:11187	.	YES_LDAS	0.0034	GT	1.8062	AG	1.8892	"[""INTRACHROMOSOMAL[chr9:2.40Mb]""]"	chr9:35397310-chr9:37842089	False			0	Read count too low: 1 < 8	FAIL	1
UMAD1--GLCCI1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	UMAD1^ENSG00000219545.11	chr7:7801757:+	GLCCI1^ENSG00000106415.13	chr7:8003908:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:21136:24443	.	YES_LDAS	0.0034	GT	1.6895	AG	1.7465	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr7:0.00Mb]"",""NEIGHBORS[776]""]"	chr7:7801757-chr7:8003908	False			0	Excluded annotation pattern: GTEx_recurrent_StarF2019	FAIL	1
ULK4--FAM71F2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ULK4^ENSG00000168038.11	chr3:41961922:-	FAM71F2^ENSG00000205085.12	chr7:128684393:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:17091:6255	.	NO_LDAS	0.0034	GT	1.2419	AG	1.9899	"[""INTERCHROMOSOMAL[chr3--chr7]""]"	chr3:41961922-chr7:128684393	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
UHRF2--BLZF1	1	0	0.5	0.0	ONLY_REF_SPLICE	UHRF2^ENSG00000147854.17	chr9:6493932:+	BLZF1^ENSG00000117475.14	chr1:169380481:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1348:3856:3564	.	NO_LDAS	0.0017	GT	1.5546	AG	1.7819	"[""INTERCHROMOSOMAL[chr9--chr1]""]"	chr9:6493932-chr1:169380481	False			0	Read count too low: 1 < 8	FAIL	1
UGGT2--GNPTG	1	0	1.0	0.0	ONLY_REF_SPLICE	UGGT2^ENSG00000102595.20	chr13:96031889:-	GNPTG^ENSG00000090581.10	chr16:1357700:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1406:36264:9141	.	YES_LDAS	0.0034	GT	1.7968	AG	1.9656	"[""INTERCHROMOSOMAL[chr13--chr16]""]"	chr13:96031889-chr16:1357700	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
UGGT2--FBN1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	UGGT2^ENSG00000102595.20	chr13:95940044:-	FBN1^ENSG00000166147.14	chr15:48596378:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1163:41782:25816	.	NO_LDAS	0.0034	GT	1.9899	AG	1.7819	"[""INTERCHROMOSOMAL[chr13--chr15]""]"	chr13:95940044-chr15:48596378	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
UBXN6--SYT14	1	0	1.0	0.0	INCL_NON_REF_SPLICE	UBXN6^ENSG00000167671.12	chr19:4457615:-	SYT14^ENSG00000143469.20	chr1:210168883:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1230:39039:14087	.	NO_LDAS	0.0034	GT	1.8892	AG	1.6729	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:4457615-chr1:210168883	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
UBL7--ADARB1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	UBL7^ENSG00000138629.16	chr15:74449936:-	ADARB1^ENSG00000197381.16	chr21:45132262:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2285:44702:17675	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7819	"[""INTERCHROMOSOMAL[chr15--chr21]""]"	chr15:74449936-chr21:45132262	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
UBAP2--NUP98	1	0	1.0	0.0	ONLY_REF_SPLICE	UBAP2^ENSG00000137073.23	chr9:33948374:-	NUP98^ENSG00000110713.17	chr11:3782145:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:38457:10388	.	NO_LDAS	0.0034	GT	1.8323	AG	1.8892	"[""INTERCHROMOSOMAL[chr9--chr11]""]"	chr9:33948374-chr11:3782145	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000278591.1	chr17:43300005:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43300005-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000275219.1	chr17:43296389:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43296389-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000274452.1	chr17:43290255:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43290255-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000274062.1	chr17:43284103:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43284103-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000274862.1	chr17:43277942:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43277942-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000278774.1	chr17:43273065:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43273065-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000277903.1	chr17:43271333:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43271333-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000276596.1	chr17:43266597:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43266597-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000278048.1	chr17:43251793:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43251793-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000274432.1	chr17:43245638:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43245638-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000273709.1	chr17:43241144:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43241144-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
U2--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	U2^ENSG00000275616.1	chr17:43239885:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.13Mb]""]"	chr17:43239885-chr17:43399661	False			0	Read count too low: 1 < 8	FAIL	1
TYRP1--LYST	1	0	1.0	0.0	ONLY_REF_SPLICE	TYRP1^ENSG00000107165.13	chr9:12704705:+	LYST^ENSG00000143669.14	chr1:235804665:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1282:35957:26657	.	YES_LDAS	0.0034	GT	1.9086	AG	1.9329	"[""INTERCHROMOSOMAL[chr9--chr1]""]"	chr9:12704705-chr1:235804665	False			0	Read count too low: 1 < 8	FAIL	1
TYMSOS--EBF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TYMSOS^ENSG00000176912.5	chr18:641292:-	EBF1^ENSG00000164330.17	chr5:159095675:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1467:41312:7207	.	NO_LDAS	0.0034	GT	1.2729	AG	1.6895	"[""INTERCHROMOSOMAL[chr18--chr5]""]"	chr18:641292-chr5:159095675	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TWIST2--DYSF	1	0	1.0	0.0	ONLY_REF_SPLICE	TWIST2^ENSG00000233608.4	chr2:238848733:+	DYSF^ENSG00000135636.14	chr2:71480883:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2148:49985:14606	.	YES_LDAS	0.0034	GT	1.4295	AG	1.2867	"[""INTRACHROMOSOMAL[chr2:167.16Mb]""]"	chr2:238848733-chr2:71480883	False			0	Read count too low: 1 < 8	FAIL	1
TVP23C--CDRT4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TVP23C^ENSG00000175106.17	chr17:15503098:-	CDRT4^ENSG00000239704.11	chr17:15438200:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1384:42793:26755	.	YES_LDAS	0.0034	GT	1.9329	AG	1.6402	"[""INTRACHROMOSOMAL[chr17:0.03Mb]"",""NEIGHBORS[26536]""]"	chr17:15503098-chr17:15438200	False			0	Read count too low: 1 < 8	FAIL	1
TTTY2B--RPS3AP36	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TTTY2B^ENSG00000212856.6	chrY:6455997:-	RPS3AP36^ENSG00000214362.2	chr10:95595083:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1373:39306:12728	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7465	"[""INTERCHROMOSOMAL[chrY--chr10]""]"	chrY:6455997-chr10:95595083	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TTN-AS1--MTX2	1	0	1.0	0.0	ONLY_REF_SPLICE	TTN-AS1^ENSG00000237298.10	chr2:178537691:+	MTX2^ENSG00000128654.14	chr2:176296860:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1342:12973:21710	.	YES_LDAS	0.0034	GT	1.8323	AG	1.9656	"[""INTRACHROMOSOMAL[chr2:2.18Mb]""]"	chr2:178537691-chr2:176296860	False			0	Read count too low: 1 < 8	FAIL	1
TTLL7--FCGRT	1	0	1.0	0.0	ONLY_REF_SPLICE	TTLL7^ENSG00000137941.17	chr1:83949865:-	FCGRT^ENSG00000104870.13	chr19:49524507:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1353:50745:5022	.	YES_LDAS	0.0034	GT	1.8892	AG	1.6049	"[""INTERCHROMOSOMAL[chr1--chr19]""]"	chr1:83949865-chr19:49524507	False			0	Read count too low: 1 < 8	FAIL	1
TTLL5--TBL1XR1	1	0	1.0	0.0	ONLY_REF_SPLICE	TTLL5^ENSG00000119685.20	chr14:75863862:+	TBL1XR1^ENSG00000177565.18	chr3:177098541:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2139:38465:11075	.	YES_LDAS	0.0034	GT	1.5058	AG	1.5329	"[""INTERCHROMOSOMAL[chr14--chr3]""]"	chr14:75863862-chr3:177098541	False			0	Read count too low: 1 < 8	FAIL	1
TTLL2--TESC	1	0	1.0	0.0	ONLY_REF_SPLICE	TTLL2^ENSG00000120440.15	chr6:167348953:+	TESC^ENSG00000088992.18	chr12:117056886:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1337:13111:3060	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8295	"[""INTERCHROMOSOMAL[chr6--chr12]""]"	chr6:167348953-chr12:117056886	False			0	Read count too low: 1 < 8	FAIL	1
TTC3--PXMP4	1	0	1.0	0.0	ONLY_REF_SPLICE	TTC3^ENSG00000182670.13	chr21:37197696:+	PXMP4^ENSG00000101417.12	chr20:33707969:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2257:11735:27749	.	YES_LDAS	0.0034	GT	1.053	AG	1.9329	"[""INTERCHROMOSOMAL[chr21--chr20]""]"	chr21:37197696-chr20:33707969	False			0	Read count too low: 1 < 8	FAIL	1
TTC3--DYNC2H1	1	0	1.0	0.0	ONLY_REF_SPLICE	TTC3^ENSG00000182670.13	chr21:37073473:+	DYNC2H1^ENSG00000187240.16	chr11:103399663:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1125:12925:5260	.	YES_LDAS	0.0034	GT	1.5058	AG	1.4566	"[""INTERCHROMOSOMAL[chr21--chr11]""]"	chr21:37073473-chr11:103399663	False			0	Read count too low: 1 < 8	FAIL	1
TTC21B--TPK1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TTC21B^ENSG00000123607.16	chr2:165859842:-	TPK1^ENSG00000196511.14	chr7:144548602:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1263:30682:16960	.	YES_LDAS	0.0034	GT	1.9899	AG	1.8323	"[""INTERCHROMOSOMAL[chr2--chr7]""]"	chr2:165859842-chr7:144548602	False			0	Read count too low: 1 < 8	FAIL	1
TTC21B--ARPC5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TTC21B^ENSG00000123607.16	chr2:165899819:-	ARPC5^ENSG00000162704.16	chr1:183633152:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1189:22503:20982	.	NO_LDAS	0.0034	GT	1.8062	AG	1.8892	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:165899819-chr1:183633152	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
TTBK2--UBQLN1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	TTBK2^ENSG00000128881.17	chr15:42920633:-	UBQLN1^ENSG00000135018.14	chr9:83707705:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1105:39161:28590	.	NO_LDAS	0.0017	GT	1.1589	AG	1.4716	"[""INTERCHROMOSOMAL[chr15--chr9]""]"	chr15:42920633-chr9:83707705	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TTBK1--CHMP1A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TTBK1^ENSG00000146216.13	chr6:43285943:+	CHMP1A^ENSG00000131165.16	chr16:89653923:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1491:36628:7894	.	NO_LDAS	0.0034	GC	1.8295	AG	1.9086	"[""INTERCHROMOSOMAL[chr6--chr16]""]"	chr6:43285943-chr16:89653923	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TSPYL2--SMURF2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TSPYL2^ENSG00000184205.14	chrX:53088307:+	SMURF2^ENSG00000108854.16	chr17:64662300:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1102:33206:7740	.	NO_LDAS	0.0034	GT	1.4716	AG	1.3753	"[""INTERCHROMOSOMAL[chrX--chr17]""]"	chrX:53088307-chr17:64662300	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TSPAN32--AC239809.3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TSPAN32^ENSG00000064201.16	chr11:2302962:+	AC239809.3^ENSG00000227733.10	chr1:148161406:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1143:48294:17563	.	NO_LDAS	0.0034	GT	1.9086	AG	1.2419	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:2302962-chr1:148161406	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TSIX--HMGN3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TSIX^ENSG00000270641.1	chrX:73827397:+	HMGN3^ENSG00000118418.14	chr6:79202361:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1320:26484:23055	.	NO_LDAS	0.0034	GT	1.8295	AG	1.7056	"[""INTERCHROMOSOMAL[chrX--chr6]""]"	chrX:73827397-chr6:79202361	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TRPV4--ZNF107	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TRPV4^ENSG00000111199.12	chr12:109833350:-	ZNF107^ENSG00000196247.11	chr7:64707654:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2113:2294:28268	.	NO_LDAS	0.0034	GT	1.6895	AG	1.8062	"[""INTERCHROMOSOMAL[chr12--chr7]""]"	chr12:109833350-chr7:64707654	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TRPS1--ZNF704	1	0	1.0	0.0	ONLY_REF_SPLICE	TRPS1^ENSG00000104447.13	chr8:115587001:-	ZNF704^ENSG00000164684.13	chr8:80643129:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1269:29501:4013	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8892	"[""INTRACHROMOSOMAL[chr8:34.53Mb]""]"	chr8:115587001-chr8:80643129	False			0	Read count too low: 1 < 8	FAIL	1
TRPM7--SPPL2A	1	0	1.0	0.0	ONLY_REF_SPLICE	TRPM7^ENSG00000092439.16	chr15:50637422:-	SPPL2A^ENSG00000138600.10	chr15:50722201:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1442:1129:19861	.	YES_LDAS	0.0034	GT	1.7968	AG	1.8892	"[""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr15:0.02Mb]"",""LOCAL_REARRANGEMENT:-:[15469]""]"	chr15:50637422-chr15:50722201	False			0	Read count too low: 1 < 8	FAIL	1
TRIP12--MFF	1	0	1.0	0.0	ONLY_REF_SPLICE	TRIP12^ENSG00000153827.14	chr2:229829193:-	MFF^ENSG00000168958.20	chr2:227332419:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2456:3686:29277	.	NO_LDAS	0.0034	GT	1.8062	AG	1.4566	"[""INTRACHROMOSOMAL[chr2:2.41Mb]""]"	chr2:229829193-chr2:227332419	False			0	Read count too low: 1 < 8	FAIL	1
TRIP12--HEATR5B	1	0	1.0	0.0	ONLY_REF_SPLICE	TRIP12^ENSG00000153827.14	chr2:229840822:-	HEATR5B^ENSG00000008869.12	chr2:37075634:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2165:8548:5946	.	YES_LDAS	0.0034	GT	1.9899	AG	1.9656	"[""INTRACHROMOSOMAL[chr2:192.68Mb]""]"	chr2:229840822-chr2:37075634	False			0	Read count too low: 1 < 8	FAIL	1
TRIM8--SFXN2	1	0	1.0	0.0	ONLY_REF_SPLICE	TRIM8^ENSG00000171206.15	chr10:102656920:+	SFXN2^ENSG00000156398.13	chr10:102726612:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2315:46927:22957	.	YES_LDAS	0.0034	GT	1.5219	AG	1.9219	"[""INTRACHROMOSOMAL[chr10:0.06Mb]"",""NEIGHBORS[56220]""]"	chr10:102656920-chr10:102726612	False			0	Read count too low: 1 < 8	FAIL	1
TRIM73--STAG3L1	1	0	0.5	0.0	ONLY_REF_SPLICE	TRIM73^ENSG00000178809.11	chr7:75395503:+	STAG3L1^ENSG00000205583.13	chr7:75385083:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2438:8467:26572	.	YES_LDAS	0.0017	GT	1.9329	AG	1.8892	"[""INTRACHROMOSOMAL[chr7:0.00Mb]"",""NEIGHBORS_OVERLAP:+:+:[320]""]"	chr7:75395503-chr7:75385083	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
TRIM52--TMEM245	1	0	1.0	0.0	ONLY_REF_SPLICE	TRIM52^ENSG00000183718.5	chr5:181260001:-	TMEM245^ENSG00000106771.13	chr9:109038117:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1130:11533:22607	.	YES_LDAS	0.0034	GT	1.8892	AG	1.6895	"[""INTERCHROMOSOMAL[chr5--chr9]""]"	chr5:181260001-chr9:109038117	False			0	Read count too low: 1 < 8	FAIL	1
TRIM44--CD244	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TRIM44^ENSG00000166326.7	chr11:35663460:+	CD244^ENSG00000122223.13	chr1:160839109:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1104:51603:14914	.	NO_LDAS	0.0034	GT	1.2729	AG	1.2729	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:35663460-chr1:160839109	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TRIM26--NEXN-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TRIM26^ENSG00000234127.9	chr6:30186200:-	NEXN-AS1^ENSG00000235927.4	chr1:77887895:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1106:26071:15923	.	NO_LDAS	0.0034	GT	0.9968	AG	0.9968	"[""INTERCHROMOSOMAL[chr6--chr1]""]"	chr6:30186200-chr1:77887895	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TRAK1--CADM2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	TRAK1^ENSG00000182606.17	chr3:42223816:+	CADM2^ENSG00000175161.14	chr3:86071661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2291:34112:10711	.	NO_LDAS	0.0017	GT	1.3383	AG	1.4256	"[""INTRACHROMOSOMAL[chr3:42.73Mb]""]"	chr3:42223816-chr3:86071661	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TRAF3IP3--RGL1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TRAF3IP3^ENSG00000009790.15	chr1:209760153:+	RGL1^ENSG00000143344.16	chr1:183892077:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1195:13418:3032	.	NO_LDAS	0.0034	GT	1.8295	AG	1.9656	"[""INTRACHROMOSOMAL[chr1:25.83Mb]""]"	chr1:209760153-chr1:183892077	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TPT1P8--TPT1P9	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TPT1P8^ENSG00000219491.7	chr8:36888808:+	TPT1P9^ENSG00000234782.3	chr9:118083051:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1410:12957:10837	.	NO_LDAS	0.0034	GT	1.4566	AG	1.7056	"[""INTERCHROMOSOMAL[chr8--chr9]""]"	chr8:36888808-chr9:118083051	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
TPT1-AS1--ZNF436	1	0	0.5	0.0	INCL_NON_REF_SPLICE	TPT1-AS1^ENSG00000170919.16	chr13:45381156:+	ZNF436^ENSG00000125945.15	chr1:23363177:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1291:49467:6058	.	NO_LDAS	0.0017	GT	1.7968	AG	1.5656	"[""INTERCHROMOSOMAL[chr13--chr1]""]"	chr13:45381156-chr1:23363177	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TPT1-AS1--ZNF436	1	0	0.5	0.0	INCL_NON_REF_SPLICE	TPT1-AS1^ENSG00000170919.16	chr13:45379940:+	ZNF436^ENSG00000125945.15	chr1:23363177:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1291:49467:6058	.	NO_LDAS	0.0017	GT	1.7968	AG	1.5656	"[""INTERCHROMOSOMAL[chr13--chr1]""]"	chr13:45379940-chr1:23363177	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TPST1--LMBR1	1	0	1.0	0.0	ONLY_REF_SPLICE	TPST1^ENSG00000169902.15	chr7:66286709:+	LMBR1^ENSG00000105983.22	chr7:156826744:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2389:22568:26671	.	YES_LDAS	0.0034	GT	1.7465	AG	1.7968	"[""INTRACHROMOSOMAL[chr7:90.25Mb]""]"	chr7:66286709-chr7:156826744	False			0	Read count too low: 1 < 8	FAIL	1
TPRG1--RBM4	1	0	0.25	0.0	ONLY_REF_SPLICE	TPRG1^ENSG00000188001.10	chr3:189310539:+	RBM4^ENSG00000173933.21	chr11:66652277:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2179:6485:27399	.	NO_LDAS	0.0009	GT	1.9086	AG	1.8892	"[""INTERCHROMOSOMAL[chr3--chr11]""]"	chr3:189310539-chr11:66652277	False			0	Read count too low: 1 < 8	FAIL	1
TPRG1--LINC00265	1	0	0.25	0.0	ONLY_REF_SPLICE	TPRG1^ENSG00000188001.10	chr3:189310539:+	LINC00265^ENSG00000188185.13	chr7:39744292:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2179:6485:27399	.	NO_LDAS	0.0009	GT	1.9086	AG	1.8892	"[""INTERCHROMOSOMAL[chr3--chr7]""]"	chr3:189310539-chr7:39744292	False			0	Read count too low: 1 < 8	FAIL	1
TPRG1--FO681492.1	1	0	0.25	0.0	INCL_NON_REF_SPLICE	TPRG1^ENSG00000188001.10	chr3:189310539:+	FO681492.1^ENSG00000277758.5	chr10:47752428:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2179:6485:27399	.	NO_LDAS	0.0009	GT	1.9086	AG	1.8892	"[""INTERCHROMOSOMAL[chr3--chr10]""]"	chr3:189310539-chr10:47752428	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TPM3--ZXDA	1	0	0.33	0.0	INCL_NON_REF_SPLICE	TPM3^ENSG00000143549.21	chr1:154176113:-	ZXDA^ENSG00000198205.7	chrX:57910066:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1105:32211:3130	.	NO_LDAS	0.0011	GT	1.5058	AG	1.2729	"[""INTERCHROMOSOMAL[chr1--chrX]""]"	chr1:154176113-chrX:57910066	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TPM3--KCNT1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	TPM3^ENSG00000143549.21	chr1:154176113:-	KCNT1^ENSG00000107147.14	chr9:135736675:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1105:32211:3130	.	NO_LDAS	0.0011	GT	1.5058	AG	0.9183	"[""INTERCHROMOSOMAL[chr1--chr9]""]"	chr1:154176113-chr9:135736675	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TPM3--CAPRIN2	1	0	0.33	0.0	INCL_NON_REF_SPLICE	TPM3^ENSG00000143549.21	chr1:154176113:-	CAPRIN2^ENSG00000110888.17	chr12:30754794:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1105:32211:3130	.	NO_LDAS	0.0011	GT	1.5058	AG	1.2729	"[""INTERCHROMOSOMAL[chr1--chr12]""]"	chr1:154176113-chr12:30754794	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TP53TG1--PHF11	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TP53TG1^ENSG00000182165.18	chr7:87340879:-	PHF11^ENSG00000136147.18	chr13:49526387:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2166:10951:26054	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8295	"[""INTERCHROMOSOMAL[chr7--chr13]""]"	chr7:87340879-chr13:49526387	False			0	Read count too low: 1 < 8	FAIL	1
TP53BP1--ZNF704	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TP53BP1^ENSG00000067369.14	chr15:43456168:-	ZNF704^ENSG00000164684.13	chr8:80633699:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2163:42672:25592	.	NO_LDAS	0.0034	GT	1.3383	AG	1.5301	"[""INTERCHROMOSOMAL[chr15--chr8]""]"	chr15:43456168-chr8:80633699	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TOP2B--SLC4A7	1	0	1.0	0.0	ONLY_REF_SPLICE	TOP2B^ENSG00000077097.15	chr3:25664229:-	SLC4A7^ENSG00000033867.16	chr3:27424152:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1125:41515:15573	.	YES_LDAS	0.0034	GT	1.8892	AG	1.7465	"[""INTRACHROMOSOMAL[chr3:1.71Mb]""]"	chr3:25664229-chr3:27424152	False			0	Read count too low: 1 < 8	FAIL	1
TOP1--FRMD4B	1	0	1.0	0.0	ONLY_REF_SPLICE	TOP1^ENSG00000198900.7	chr20:41101353:+	FRMD4B^ENSG00000114541.15	chr3:69176656:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1131:8370:11327	.	YES_LDAS	0.0034	GT	1.9219	AG	1.8892	"[""INTERCHROMOSOMAL[chr20--chr3]""]"	chr20:41101353-chr3:69176656	False			0	Read count too low: 1 < 8	FAIL	1
TNRC6B--F11R	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TNRC6B^ENSG00000100354.21	chr22:40251200:+	F11R^ENSG00000158769.18	chr1:160999055:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1353:16250:22088	.	NO_LDAS	0.0034	GT	1.053	AG	1.9656	"[""INTERCHROMOSOMAL[chr22--chr1]""]"	chr22:40251200-chr1:160999055	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TNPO3--DMTN	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TNPO3^ENSG00000064419.13	chr7:128975819:-	DMTN^ENSG00000158856.18	chr8:22081945:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2452:25925:4209	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8256	"[""INTERCHROMOSOMAL[chr7--chr8]""]"	chr7:128975819-chr8:22081945	False			0	Read count too low: 1 < 8	FAIL	1
TNPO3--AC004980.2	1	0	0.25	0.0	INCL_NON_REF_SPLICE	TNPO3^ENSG00000064419.13	chr7:129054651:-	AC004980.2^ENSG00000214243.3	chr7:76650882:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1322:8176:10991	.	YES_LDAS	0.0009	GT	1.8892	AG	1.9329	"[""INTRACHROMOSOMAL[chr7:52.30Mb]""]"	chr7:129054651-chr7:76650882	False			0	Read count too low: 1 < 8	FAIL	1
TNNC2--WFDC3	1	0	1.0	0.0	ONLY_REF_SPLICE	TNNC2^ENSG00000101470.10	chr20:45823991:-	WFDC3^ENSG00000124116.19	chr20:45758431:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1229:11533:20561	.	YES_LDAS	0.0034	GT	1.9899	AG	1.5656	"[""INTRACHROMOSOMAL[chr20:0.03Mb]"",""NEIGHBORS[31282]""]"	chr20:45823991-chr20:45758431	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
TMX4--WDR70	1	0	0.33	0.0	INCL_NON_REF_SPLICE	TMX4^ENSG00000125827.9	chr20:7982421:-	WDR70^ENSG00000082068.9	chr5:37396536:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1292:2545:22985	.	NO_LDAS	0.0011	GT	1.4295	AG	1.2729	"[""INTERCHROMOSOMAL[chr20--chr5]""]"	chr20:7982421-chr5:37396536	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TMX4--MAGEB2	1	0	0.33	0.0	INCL_NON_REF_SPLICE	TMX4^ENSG00000125827.9	chr20:7982421:-	MAGEB2^ENSG00000099399.6	chrX:30218678:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1292:2545:22985	.	NO_LDAS	0.0011	GT	1.4295	AG	1.2867	"[""INTERCHROMOSOMAL[chr20--chrX]""]"	chr20:7982421-chrX:30218678	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TMX1--HNRNPC	1	0	1.0	0.0	ONLY_REF_SPLICE	TMX1^ENSG00000139921.13	chr14:51240444:+	HNRNPC^ENSG00000092199.18	chr14:21234229:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2307:32551:26138	.	YES_LDAS	0.0034	GT	1.8256	AG	1.6402	"[""INTRACHROMOSOMAL[chr14:29.97Mb]""]"	chr14:51240444-chr14:21234229	False			0	Read count too low: 1 < 8	FAIL	1
TMPRSS11F--KIAA1191	1	0	1.0	0.0	ONLY_REF_SPLICE	TMPRSS11F^ENSG00000198092.6	chr4:68090523:-	KIAA1191^ENSG00000122203.15	chr5:176348356:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1259:44783:18011	.	NO_LDAS	0.0034	GT	1.7465	AG	1.7232	"[""INTERCHROMOSOMAL[chr4--chr5]""]"	chr4:68090523-chr5:176348356	False			0	Read count too low: 1 < 8	FAIL	1
TMEM94--LDB1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	TMEM94^ENSG00000177728.17	chr17:75491900:+	LDB1^ENSG00000198728.11	chr10:102109392:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2205:9705:28016	.	NO_LDAS	0.0017	GT	1.5656	AG	1.8892	"[""INTERCHROMOSOMAL[chr17--chr10]""]"	chr17:75491900-chr10:102109392	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TMEM79--AC018737.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TMEM79^ENSG00000163472.19	chr1:156292398:+	AC018737.2^ENSG00000279721.1	chr2:121689467:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2296:47736:5078	.	NO_LDAS	0.0034	GT	0.9968	AG	1.4295	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:156292398-chr2:121689467	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TMEM45A--RER1	1	0	1.0	0.0	ONLY_REF_SPLICE	TMEM45A^ENSG00000181458.10	chr3:100519608:+	RER1^ENSG00000157916.20	chr1:2395784:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1290:16428:20015	.	YES_LDAS	0.0034	GT	1.7465	AG	1.9086	"[""INTERCHROMOSOMAL[chr3--chr1]""]"	chr3:100519608-chr1:2395784	False			0	Read count too low: 1 < 8	FAIL	1
TMEM45A--LNP1	1	0	1.0	0.0	ONLY_REF_SPLICE	TMEM45A^ENSG00000181458.10	chr3:100519608:+	LNP1^ENSG00000206535.8	chr3:100451719:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1241:31960:24078	.	YES_LDAS	0.0034	GT	1.7465	AG	1.4295	"[""DEEPEST2019"",""TumorFusionsNAR2018"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr3:0.04Mb]"",""LOCAL_REARRANGEMENT:+:[36300]""]"	chr3:100519608-chr3:100451719	False			0	Read count too low: 1 < 8	FAIL	1
TMEM41B--TLL1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TMEM41B^ENSG00000166471.11	chr11:9314373:-	TLL1^ENSG00000038295.8	chr4:165873475:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2317:48480:6227	.	NO_LDAS	0.0034	GC	1.4716	AG	1.3996	"[""INTERCHROMOSOMAL[chr11--chr4]""]"	chr11:9314373-chr4:165873475	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TMEM200B--MFSD11	1	0	1.0	0.0	ONLY_REF_SPLICE	TMEM200B^ENSG00000253304.2	chr1:29123856:-	MFSD11^ENSG00000092931.11	chr17:76738282:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2272:3791:28562	.	YES_LDAS	0.0034	GT	1.5628	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr17]""]"	chr1:29123856-chr17:76738282	False			0	Read count too low: 1 < 8	FAIL	1
TMEM158--AC022509.1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	TMEM158^ENSG00000249992.2	chr3:45225152:-	AC022509.1^ENSG00000255750.6	chr12:26231678:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2426:2149:6773	.	NO_LDAS	0.0011	GT	0.971	AG	1.2419	"[""INTERCHROMOSOMAL[chr3--chr12]""]"	chr3:45225152-chr12:26231678	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TMEM150A--GPRC5B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TMEM150A^ENSG00000168890.14	chr2:85599243:-	GPRC5B^ENSG00000167191.12	chr16:19858834:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1230:11299:6086	.	YES_LDAS	0.0034	AT	1.6895	AC	1.5628	"[""INTERCHROMOSOMAL[chr2--chr16]""]"	chr2:85599243-chr16:19858834	False			0	Read count too low: 1 < 8	FAIL	1
TMEM135--TTC17	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TMEM135^ENSG00000166575.17	chr11:87302359:+	TTC17^ENSG00000052841.15	chr11:43468316:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:37737:25536	.	NO_LDAS	0.0034	GT	1.8295	AG	1.5329	"[""INTRACHROMOSOMAL[chr11:43.54Mb]""]"	chr11:87302359-chr11:43468316	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TMEM132B--UBC	1	0	1.0	0.0	ONLY_REF_SPLICE	TMEM132B^ENSG00000139364.10	chr12:125415677:+	UBC^ENSG00000150991.15	chr12:124913774:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2158:2157:29711	.	YES_LDAS	0.0034	GT	1.5656	AG	1.9329	"[""INTRACHROMOSOMAL[chr12:0.27Mb]""]"	chr12:125415677-chr12:124913774	False			0	Read count too low: 1 < 8	FAIL	1
TMEM11--TAPT1-AS1	1	0	1.0	0.0	ONLY_REF_SPLICE	TMEM11^ENSG00000178307.10	chr17:21214091:-	TAPT1-AS1^ENSG00000263327.6	chr4:16238771:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:24566:9674	.	YES_LDAS	0.0034	GT	1.5656	AG	1.7968	"[""INTERCHROMOSOMAL[chr17--chr4]""]"	chr17:21214091-chr4:16238771	False			0	Read count too low: 1 < 8	FAIL	1
TMED10--JPX	1	0	0.33	0.0	INCL_NON_REF_SPLICE	TMED10^ENSG00000170348.9	chr14:75147664:-	JPX^ENSG00000225470.8	chrX:74031792:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1366:47307:5092	.	NO_LDAS	0.0011	GT	1.5546	AG	1.6402	"[""INTERCHROMOSOMAL[chr14--chrX]""]"	chr14:75147664-chrX:74031792	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TMBIM4--SCAF11	1	0	1.0	0.0	ONLY_REF_SPLICE	TMBIM4^ENSG00000155957.18	chr12:66169855:-	SCAF11^ENSG00000139218.18	chr12:45934505:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1173:29970:8076	.	YES_LDAS	0.0034	GT	1.9899	AG	1.7819	"[""INTRACHROMOSOMAL[chr12:20.14Mb]""]"	chr12:66169855-chr12:45934505	False			0	Read count too low: 1 < 8	FAIL	1
TM9SF2--KCNA1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TM9SF2^ENSG00000125304.10	chr13:99554455:+	KCNA1^ENSG00000111262.6	chr12:4913326:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1214:26281:28002	.	NO_LDAS	0.0034	GT	1.7465	AG	1.8892	"[""INTERCHROMOSOMAL[chr13--chr12]""]"	chr13:99554455-chr12:4913326	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TM9SF1--ITPRIP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TM9SF1^ENSG00000100926.15	chr14:24194675:-	ITPRIP^ENSG00000148841.17	chr10:104315904:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2363:50608:2485	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chr14--chr10]""]"	chr14:24194675-chr10:104315904	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TLR6--GOLGA8CP	1	0	0.17	0.0	INCL_NON_REF_SPLICE	TLR6^ENSG00000174130.12	chr4:38827345:-	GOLGA8CP^ENSG00000181984.11	chr15:20574016:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1122:11824:21570	.	NO_LDAS	0.0006	GT	1.9656	AG	1.8256	"[""INTERCHROMOSOMAL[chr4--chr15]""]"	chr4:38827345-chr15:20574016	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TLR6--AL161935.3	1	0	0.17	0.0	INCL_NON_REF_SPLICE	TLR6^ENSG00000174130.12	chr4:38827345:-	AL161935.3^ENSG00000286694.1	chr10:31608790:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1122:11824:21570	.	NO_LDAS	0.0006	GT	1.9656	AG	1.7056	"[""INTERCHROMOSOMAL[chr4--chr10]""]"	chr4:38827345-chr10:31608790	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TKT--TKTL1	1	0	1.0	0.0	ONLY_REF_SPLICE	TKT^ENSG00000163931.16	chr3:53229007:-	TKTL1^ENSG00000007350.17	chrX:154325339:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1259:42461:3648	.	NO_LDAS	0.0034	GT	1.7819	AG	1.8323	"[""INTERCHROMOSOMAL[chr3--chrX]""]"	chr3:53229007-chrX:154325339	False			0	Read count too low: 1 < 8	FAIL	1
THSD1--LHFPL6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	THSD1^ENSG00000136114.17	chr13:52406197:-	LHFPL6^ENSG00000183722.9	chr13:39603350:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1224:18879:23195	.	NO_LDAS	0.0034	GT	1.2366	AG	1.3383	"[""INTRACHROMOSOMAL[chr13:12.77Mb]""]"	chr13:52406197-chr13:39603350	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
THOC5--RGL3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	THOC5^ENSG00000100296.14	chr22:29506548:-	RGL3^ENSG00000205517.13	chr19:11397597:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1221:17528:6283	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7465	"[""INTERCHROMOSOMAL[chr22--chr19]""]"	chr22:29506548-chr19:11397597	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
THA1P--CTRB2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	THA1P^ENSG00000267676.1	chr17:78254345:-	CTRB2^ENSG00000168928.13	chr16:75206832:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1205:37332:14186	.	NO_LDAS	0.0034	GT	1.4256	AG	0.9056	"[""INTERCHROMOSOMAL[chr17--chr16]""]"	chr17:78254345-chr16:75206832	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TGFBR3--RSBN1	1	0	1.0	0.0	ONLY_REF_SPLICE	TGFBR3^ENSG00000069702.11	chr1:91758613:-	RSBN1^ENSG00000081019.13	chr1:113798036:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2406:30067:28983	.	YES_LDAS	0.0034	GT	1.8295	AG	1.5546	"[""INTRACHROMOSOMAL[chr1:21.86Mb]""]"	chr1:91758613-chr1:113798036	False			0	Read count too low: 1 < 8	FAIL	1
TGFB3--HSPA12A	1	0	1.0	0.0	ONLY_REF_SPLICE	TGFB3^ENSG00000119699.8	chr14:75965588:-	HSPA12A^ENSG00000165868.16	chr10:116676502:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2158:50462:15993	.	YES_LDAS	0.0034	GT	1.5546	AG	1.5058	"[""INTERCHROMOSOMAL[chr14--chr10]""]"	chr14:75965588-chr10:116676502	False			0	Read count too low: 1 < 8	FAIL	1
TFRC--CD33	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TFRC^ENSG00000072274.13	chr3:196081918:-	CD33^ENSG00000105383.15	chr19:51238708:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2266:23514:16035	.	NO_LDAS	0.0034	GT	1.3383	AG	1.6895	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr3--chr19]""]"	chr3:196081918-chr19:51238708	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
TFG--TANC2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TFG^ENSG00000114354.15	chr3:100744931:+	TANC2^ENSG00000170921.15	chr17:63420114:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1119:25141:16638	.	NO_LDAS	0.0034	GT	1.8892	AG	1.4566	"[""INTERCHROMOSOMAL[chr3--chr17]""]"	chr3:100744931-chr17:63420114	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TFDP1P2--NCBP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TFDP1P2^ENSG00000223723.1	chrX:36962640:-	NCBP1^ENSG00000136937.13	chr9:97660946:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1184:19267:3046	.	NO_LDAS	0.0034	GT	1.6895	AG	1.8323	"[""INTERCHROMOSOMAL[chrX--chr9]""]"	chrX:36962640-chr9:97660946	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TET3--DGUOK	1	0	1.0	0.0	ONLY_REF_SPLICE	TET3^ENSG00000187605.16	chr2:74048411:+	DGUOK^ENSG00000114956.20	chr2:73946719:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:25367:23448	.	YES_LDAS	0.0034	GT	1.8256	AG	1.8295	"[""DEEPEST2019"",""TumorFusionsNAR2018"",""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""INTRACHROMOSOMAL[chr2:0.03Mb]"",""LOCAL_REARRANGEMENT:+:[25949]""]"	chr2:74048411-chr2:73946719	False			0	Read count too low: 1 < 8	FAIL	1
TET2--AL356534.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TET2^ENSG00000168769.14	chr4:105235465:+	AL356534.1^ENSG00000286215.1	chr6:127065598:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1290:36264:23994	.	NO_LDAS	0.0034	GT	1.5546	AG	1.7819	"[""INTERCHROMOSOMAL[chr4--chr6]""]"	chr4:105235465-chr6:127065598	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TERF2--BAMBI	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TERF2^ENSG00000132604.11	chr16:69385790:-	BAMBI^ENSG00000095739.11	chr10:28677865:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1408:15522:16904	.	NO_LDAS	0.0034	GT	1.6402	AG	0.971	"[""INTERCHROMOSOMAL[chr16--chr10]""]"	chr16:69385790-chr10:28677865	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TECPR2--USP3	1	0	1.0	0.0	ONLY_REF_SPLICE	TECPR2^ENSG00000196663.16	chr14:102465289:+	USP3^ENSG00000140455.17	chr15:63574046:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1125:25408:27497	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9219	"[""INTERCHROMOSOMAL[chr14--chr15]""]"	chr14:102465289-chr15:63574046	False			0	Read count too low: 1 < 8	FAIL	1
TCHP--RNASET2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TCHP^ENSG00000139437.18	chr12:109911239:+	RNASET2^ENSG00000026297.16	chr6:166931929:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1131:37599:27679	.	NO_LDAS	0.0034	GT	1.8892	AG	1.6895	"[""INTERCHROMOSOMAL[chr12--chr6]""]"	chr12:109911239-chr6:166931929	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TCF12--SNX29	1	0	1.0	0.0	ONLY_REF_SPLICE	TCF12^ENSG00000140262.18	chr15:57091891:+	SNX29^ENSG00000048471.14	chr16:12277933:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1298:38999:3340	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""INTERCHROMOSOMAL[chr15--chr16]""]"	chr15:57091891-chr16:12277933	False			0	Read count too low: 1 < 8	FAIL	1
TCF12--MYO9A	1	0	1.0	0.0	ONLY_REF_SPLICE	TCF12^ENSG00000140262.18	chr15:57091891:+	MYO9A^ENSG00000066933.16	chr15:72046634:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1293:7140:4405	.	YES_LDAS	0.0034	GT	1.9656	AG	1.7056	"[""INTRACHROMOSOMAL[chr15:14.52Mb]""]"	chr15:57091891-chr15:72046634	False			0	Read count too low: 1 < 8	FAIL	1
TCEANC2--LAMA4	1	0	0.33	0.0	INCL_NON_REF_SPLICE	TCEANC2^ENSG00000116205.14	chr1:54103966:+	LAMA4^ENSG00000112769.20	chr6:112148259:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2101:32591:15363	.	NO_LDAS	0.0011	GT	1.7056	AG	1.7232	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:54103966-chr6:112148259	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TCEA3--ZNF131	1	0	1.0	0.0	ONLY_REF_SPLICE	TCEA3^ENSG00000204219.11	chr1:23424565:-	ZNF131^ENSG00000172262.11	chr5:43122039:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1245:34695:9898	.	NO_LDAS	0.0034	GT	1.5656	AG	1.5058	"[""INTERCHROMOSOMAL[chr1--chr5]""]"	chr1:23424565-chr5:43122039	False			0	Read count too low: 1 < 8	FAIL	1
TBL3--HIC2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	TBL3^ENSG00000183751.15	chr16:1980453:+	HIC2^ENSG00000169635.10	chr22:21442805:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1156:14073:9379	.	NO_LDAS	0.0017	GT	1.7968	AG	1.053	"[""INTERCHROMOSOMAL[chr16--chr22]""]"	chr16:1980453-chr22:21442805	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TBCCD1--ATF7	1	0	1.0	0.0	ONLY_REF_SPLICE	TBCCD1^ENSG00000113838.13	chr3:186554254:-	ATF7^ENSG00000170653.19	chr12:53524761:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1127:38020:16077	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9219	"[""INTERCHROMOSOMAL[chr3--chr12]""]"	chr3:186554254-chr12:53524761	False			0	Read count too low: 1 < 8	FAIL	1
TBC1D5--ANO10	1	0	1.0	0.0	ONLY_REF_SPLICE	TBC1D5^ENSG00000131374.14	chr3:17403181:-	ANO10^ENSG00000160746.13	chr3:43565727:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2118:20173:16806	.	NO_LDAS	0.0034	GT	1.7232	AG	1.5656	"[""INTRACHROMOSOMAL[chr3:25.61Mb]""]"	chr3:17403181-chr3:43565727	False			0	Read count too low: 1 < 8	FAIL	1
TBC1D29P--BSG	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TBC1D29P^ENSG00000266733.7	chr17:30557585:+	BSG^ENSG00000172270.22	chr19:579500:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:18612:2359	.	NO_LDAS	0.0034	GC	1.8295	AG	1.9219	"[""INTERCHROMOSOMAL[chr17--chr19]""]"	chr17:30557585-chr19:579500	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TBC1D1--DNAH14	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TBC1D1^ENSG00000065882.16	chr4:38027879:+	DNAH14^ENSG00000185842.15	chr1:225043750:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2265:2262:3130	.	NO_LDAS	0.0034	GT	1.8256	AG	1.8062	"[""INTERCHROMOSOMAL[chr4--chr1]""]"	chr4:38027879-chr1:225043750	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TARS2--CCDC106	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TARS2^ENSG00000143374.17	chr1:150504435:+	CCDC106^ENSG00000173581.8	chr19:55652992:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2239:3176:29627	.	NO_LDAS	0.0034	GT	1.9899	AG	1.5628	"[""INTERCHROMOSOMAL[chr1--chr19]""]"	chr1:150504435-chr19:55652992	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TARM1--CREBZF	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TARM1^ENSG00000248385.8	chr19:54070096:-	CREBZF^ENSG00000137504.14	chr11:85664251:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1267:28004:1729	.	NO_LDAS	0.0034	GT	1.5656	AG	1.7819	"[""INTERCHROMOSOMAL[chr19--chr11]""]"	chr19:54070096-chr11:85664251	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TAOK1--NF1	1	0	1.0	0.0	ONLY_REF_SPLICE	TAOK1^ENSG00000160551.12	chr17:29530619:+	NF1^ENSG00000196712.18	chr17:31163186:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2127:17059:23882	.	NO_LDAS	0.0034	GT	1.6402	AG	1.3996	"[""TumorFusionsNAR2018"",""INTRACHROMOSOMAL[chr17:1.54Mb]""]"	chr17:29530619-chr17:31163186	False			0	Read count too low: 1 < 8	FAIL	1
TANGO6--EMILIN2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TANGO6^ENSG00000103047.8	chr16:68878280:+	EMILIN2^ENSG00000132205.11	chr18:2914929:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2106:28263:4083	.	NO_LDAS	0.0034	GT	1.9329	AG	1.9086	"[""INTERCHROMOSOMAL[chr16--chr18]""]"	chr16:68878280-chr18:2914929	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TANC1--ZNF185	1	0	0.33	0.0	INCL_NON_REF_SPLICE	TANC1^ENSG00000115183.15	chr2:159001164:+	ZNF185^ENSG00000147394.18	chrX:152931724:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1266:2529:29179	.	NO_LDAS	0.0011	GT	1.4295	AG	1.7968	"[""INTERCHROMOSOMAL[chr2--chrX]""]"	chr2:159001164-chrX:152931724	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TAGLN--EHD4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	TAGLN^ENSG00000149591.17	chr11:117204272:+	EHD4^ENSG00000103966.11	chr15:41898500:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2307:9284:9576	.	NO_LDAS	0.0034	GT	1.7056	AG	1.8892	"[""INTERCHROMOSOMAL[chr11--chr15]""]"	chr11:117204272-chr15:41898500	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
TADA2A--DGKH	1	0	1.0	0.0	ONLY_REF_SPLICE	TADA2A^ENSG00000276234.5	chr17:37444768:+	DGKH^ENSG00000102780.17	chr13:42155291:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2351:27115:10416	.	YES_LDAS	0.0034	GT	1.9656	AG	1.5656	"[""INTERCHROMOSOMAL[chr17--chr13]""]"	chr17:37444768-chr13:42155291	False			0	Read count too low: 1 < 8	FAIL	1
SYTL4--KRT18P64	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SYTL4^ENSG00000102362.15	chrX:100689852:-	KRT18P64^ENSG00000213211.2	chr6:85288374:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1308:20262:6002	.	NO_LDAS	0.0034	GT	1.5656	AG	1.5628	"[""INTERCHROMOSOMAL[chrX--chr6]""]"	chrX:100689852-chr6:85288374	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SYNCRIP--VPS13B	1	0	1.0	0.0	ONLY_REF_SPLICE	SYNCRIP^ENSG00000135316.19	chr6:85636967:-	VPS13B^ENSG00000132549.19	chr8:99170039:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1262:40148:18053	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8295	"[""INTERCHROMOSOMAL[chr6--chr8]""]"	chr6:85636967-chr8:99170039	False			0	Read count too low: 1 < 8	FAIL	1
SYF2--ZCWPW1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SYF2^ENSG00000117614.10	chr1:25232104:-	ZCWPW1^ENSG00000078487.17	chr7:100416314:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2452:6825:22775	.	NO_LDAS	0.0034	GT	1.9086	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:25232104-chr7:100416314	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SURF6--AATK	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SURF6^ENSG00000148296.7	chr9:133334392:-	AATK^ENSG00000181409.14	chr17:81110988:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2155:22633:18655	.	NO_LDAS	0.0034	GT	1.8256	AG	1.9329	"[""INTERCHROMOSOMAL[chr9--chr17]""]"	chr9:133334392-chr17:81110988	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SUN2--SUN1	1	0	1.0	0.0	ONLY_REF_SPLICE	SUN2^ENSG00000100242.15	chr22:38738587:-	SUN1^ENSG00000164828.18	chr7:872470:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2401:29275:15559	.	YES_LDAS	0.0034	GT	1.8323	AG	1.5058	"[""INTERCHROMOSOMAL[chr22--chr7]""]"	chr22:38738587-chr7:872470	False			0	Read count too low: 1 < 8	FAIL	1
SUN1--NUDCD2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SUN1^ENSG00000164828.18	chr7:843205:+	NUDCD2^ENSG00000170584.11	chr5:163457080:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2237:22252:17689	.	YES_LDAS	0.0034	GT	0.9056	AG	1.5329	"[""INTERCHROMOSOMAL[chr7--chr5]""]"	chr7:843205-chr5:163457080	False			0	Read count too low: 1 < 8	FAIL	1
SUFU--MAPKBP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SUFU^ENSG00000107882.12	chr10:102617944:+	MAPKBP1^ENSG00000137802.14	chr15:41826958:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1120:34824:7572	.	NO_LDAS	0.0034	GT	1.6895	AG	1.2366	"[""INTERCHROMOSOMAL[chr10--chr15]""]"	chr10:102617944-chr15:41826958	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STXBP5L--SLC25A26	1	0	1.0	0.0	INCL_NON_REF_SPLICE	STXBP5L^ENSG00000145087.13	chr3:121421397:+	SLC25A26^ENSG00000144741.18	chr3:66380284:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2240:34662:25339	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8892	"[""INTRACHROMOSOMAL[chr3:54.52Mb]""]"	chr3:121421397-chr3:66380284	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STXBP4--TOM1L1	1	0	1.0	0.0	ONLY_REF_SPLICE	STXBP4^ENSG00000166263.13	chr17:55081183:+	TOM1L1^ENSG00000141198.16	chr17:54947261:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2314:30035:12308	.	NO_LDAS	0.0034	GT	1.7465	AG	1.9899	"[""ChimerSeq"",""CCLE_StarF2019"",""INTRACHROMOSOMAL[chr17:0.01Mb]"",""LOCAL_REARRANGEMENT:+:[6771]""]"	chr17:55081183-chr17:54947261	False			0	Read count too low: 1 < 8	FAIL	1
STXBP1--AL355075.4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	STXBP1^ENSG00000136854.24	chr9:127654770:+	AL355075.4^ENSG00000259001.3	chr14:20343265:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1411:11242:21570	.	NO_LDAS	0.0034	GT	1.2867	AG	1.7819	"[""INTERCHROMOSOMAL[chr9--chr14]""]"	chr9:127654770-chr14:20343265	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STX3--CTCF	1	0	1.0	0.0	INCL_NON_REF_SPLICE	STX3^ENSG00000166900.17	chr11:59792215:+	CTCF^ENSG00000102974.16	chr16:67611402:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1198:24526:25998	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chr11--chr16]""]"	chr11:59792215-chr16:67611402	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STX12--MLYCD	1	0	1.0	0.0	INCL_NON_REF_SPLICE	STX12^ENSG00000117758.14	chr1:27789631:+	MLYCD^ENSG00000103150.7	chr16:83899322:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1202:24679:2864	.	NO_LDAS	0.0034	GT	1.9219	AG	1.3383	"[""INTERCHROMOSOMAL[chr1--chr16]""]"	chr1:27789631-chr16:83899322	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STRN4--ZNF274	1	0	1.0	0.0	ONLY_REF_SPLICE	STRN4^ENSG00000090372.15	chr19:46736823:-	ZNF274^ENSG00000171606.18	chr19:58185697:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1138:16525:9758	.	NO_LDAS	0.0034	GT	1.9219	AG	1.7465	"[""INTRACHROMOSOMAL[chr19:11.44Mb]""]"	chr19:46736823-chr19:58185697	False			0	Read count too low: 1 < 8	FAIL	1
STRN4--ATOH7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	STRN4^ENSG00000090372.15	chr19:46746495:-	ATOH7^ENSG00000179774.9	chr10:68231657:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1132:21047:24064	.	NO_LDAS	0.0034	GT	0.3534	AG	0.9968	"[""INTERCHROMOSOMAL[chr19--chr10]""]"	chr19:46746495-chr10:68231657	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STK24--POTEE	1	0	0.25	0.0	INCL_NON_REF_SPLICE	STK24^ENSG00000102572.15	chr13:98519405:-	POTEE^ENSG00000188219.14	chr2:131236772:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1144:50487:21108	.	NO_LDAS	0.0009	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr13--chr2]""]"	chr13:98519405-chr2:131236772	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STEAP3--RPTN	1	0	1.0	0.0	INCL_NON_REF_SPLICE	STEAP3^ENSG00000115107.20	chr2:119257490:+	RPTN^ENSG00000215853.3	chr1:152156808:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1136:20950:27679	.	NO_LDAS	0.0034	GT	1.5301	AG	1.7819	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:119257490-chr1:152156808	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STAU2--SCOC	1	0	1.0	0.0	ONLY_REF_SPLICE	STAU2^ENSG00000040341.18	chr8:73673107:-	SCOC^ENSG00000153130.18	chr4:140379121:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1365:28247:13975	.	NO_LDAS	0.0034	GT	1.9219	AG	1.7819	"[""INTERCHROMOSOMAL[chr8--chr4]""]"	chr8:73673107-chr4:140379121	False			0	Read count too low: 1 < 8	FAIL	1
STAT6--JMJD8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	STAT6^ENSG00000166888.12	chr12:57098505:-	JMJD8^ENSG00000161999.13	chr16:682288:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1311:11719:11551	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr16]""]"	chr12:57098505-chr16:682288	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STAT6--AC232323.1	1	0	0.08	0.0	INCL_NON_REF_SPLICE	STAT6^ENSG00000166888.12	chr12:57097068:-	AC232323.1^ENSG00000274343.1	chr8:85791117:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1453:48812:25493	.	NO_LDAS	0.0003	GT	1.3753	AG	1.5656	"[""INTERCHROMOSOMAL[chr12--chr8]""]"	chr12:57097068-chr8:85791117	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STARD7-AS1--TSIX	1	0	0.5	0.0	INCL_NON_REF_SPLICE	STARD7-AS1^ENSG00000204685.7	chr2:96241038:+	TSIX^ENSG00000270641.1	chrX:73827603:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2454:48027:7656	.	NO_LDAS	0.0017	GT	1.9899	AG	1.7465	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr2--chrX]""]"	chr2:96241038-chrX:73827603	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
STARD13--DIAPH2	1	0	1.0	0.0	ONLY_REF_SPLICE	STARD13^ENSG00000133121.21	chr13:33350290:-	DIAPH2^ENSG00000147202.18	chrX:97072941:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1115:22010:17408	.	YES_LDAS	0.0034	GT	1.6729	AG	1.8295	"[""INTERCHROMOSOMAL[chr13--chrX]""]"	chr13:33350290-chrX:97072941	False			0	Read count too low: 1 < 8	FAIL	1
STARD10--ZNF335	1	0	0.5	0.0	INCL_NON_REF_SPLICE	STARD10^ENSG00000214530.10	chr11:72757821:-	ZNF335^ENSG00000198026.8	chr20:45968362:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1149:1947:5358	.	NO_LDAS	0.0017	GC	1.8892	AG	1.9899	"[""INTERCHROMOSOMAL[chr11--chr20]""]"	chr11:72757821-chr20:45968362	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STAMBP--SETX	1	0	1.0	0.0	INCL_NON_REF_SPLICE	STAMBP^ENSG00000124356.16	chr2:73845262:+	SETX^ENSG00000107290.14	chr9:132329733:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1465:44144:20771	.	NO_LDAS	0.0034	GT	1.371	AG	1.3753	"[""INTERCHROMOSOMAL[chr2--chr9]""]"	chr2:73845262-chr9:132329733	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
STAM--CNNM4	1	0	1.0	0.0	ONLY_REF_SPLICE	STAM^ENSG00000136738.15	chr10:17700279:+	CNNM4^ENSG00000158158.12	chr2:96797012:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1104:28749:5120	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr10--chr2]""]"	chr10:17700279-chr2:96797012	False			0	Read count too low: 1 < 8	FAIL	1
STAM--CELF2	1	0	1.0	0.0	ONLY_REF_SPLICE	STAM^ENSG00000136738.15	chr10:17660548:+	CELF2^ENSG00000048740.18	chr10:11249153:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1351:32907:4279	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8256	"[""INTRACHROMOSOMAL[chr10:6.31Mb]""]"	chr10:17660548-chr10:11249153	False			0	Read count too low: 1 < 8	FAIL	1
STAG3--HGSNAT	1	0	0.25	0.0	ONLY_REF_SPLICE	STAG3^ENSG00000066923.18	chr7:100198166:+	HGSNAT^ENSG00000165102.15	chr8:43146948:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1216:34234:7446	.	YES_LDAS	0.0009	GT	1.7819	AG	1.4256	"[""INTERCHROMOSOMAL[chr7--chr8]""]"	chr7:100198166-chr8:43146948	False			0	Read count too low: 1 < 8	FAIL	1
STAG1--SLC41A3	1	0	1.0	0.0	ONLY_REF_SPLICE	STAG1^ENSG00000118007.13	chr3:136752195:-	SLC41A3^ENSG00000114544.17	chr3:126068246:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2103:41507:23322	.	YES_LDAS	0.0034	GT	1.7232	AG	1.5628	"[""INTRACHROMOSOMAL[chr3:10.23Mb]""]"	chr3:136752195-chr3:126068246	False			0	Read count too low: 1 < 8	FAIL	1
ST8SIA1--AEBP2	1	0	1.0	0.0	ONLY_REF_SPLICE	ST8SIA1^ENSG00000111728.11	chr12:22249006:-	AEBP2^ENSG00000139154.16	chr12:19720633:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1237:25327:11579	.	YES_LDAS	0.0034	GT	1.9219	AG	1.9899	"[""DEEPEST2019"",""TumorFusionsNAR2018"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr12:2.34Mb]""]"	chr12:22249006-chr12:19720633	False			0	Read count too low: 1 < 8	FAIL	1
ST3GAL5--SP1	1	0	1.0	0.0	ONLY_REF_SPLICE	ST3GAL5^ENSG00000115525.18	chr2:85888824:-	SP1^ENSG00000185591.10	chr12:53381659:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1450:33101:5792	.	NO_LDAS	0.0034	GT	1.6895	AG	1.7056	"[""INTERCHROMOSOMAL[chr2--chr12]""]"	chr2:85888824-chr12:53381659	False			0	Read count too low: 1 < 8	FAIL	1
ST18--PTK7	1	0	0.33	0.0	INCL_NON_REF_SPLICE	ST18^ENSG00000147488.11	chr8:52161502:-	PTK7^ENSG00000112655.16	chr6:43132042:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1147:26880:17689	.	NO_LDAS	0.0011	GT	1.7968	AG	1.9086	"[""INTERCHROMOSOMAL[chr8--chr6]""]"	chr8:52161502-chr6:43132042	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SSX2IP--GDAP2	1	0	1.0	0.0	ONLY_REF_SPLICE	SSX2IP^ENSG00000117155.17	chr1:84690371:-	GDAP2^ENSG00000196505.11	chr1:117870616:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1289:12148:26222	.	YES_LDAS	0.0034	GT	1.5329	AG	1.9329	"[""INTRACHROMOSOMAL[chr1:33.17Mb]""]"	chr1:84690371-chr1:117870616	False			0	Read count too low: 1 < 8	FAIL	1
SSX2IP--DOCK7	1	0	1.0	0.0	ONLY_REF_SPLICE	SSX2IP^ENSG00000117155.17	chr1:84690371:-	DOCK7^ENSG00000116641.18	chr1:62636603:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1260:8904:23714	.	YES_LDAS	0.0034	GT	1.5329	AG	1.5219	"[""INTRACHROMOSOMAL[chr1:21.96Mb]""]"	chr1:84690371-chr1:62636603	False			0	Read count too low: 1 < 8	FAIL	1
SSU72--FOCAD	1	0	1.0	0.0	ONLY_REF_SPLICE	SSU72^ENSG00000160075.12	chr1:1574478:-	FOCAD^ENSG00000188352.12	chr9:20715322:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1427:40495:27932	.	YES_LDAS	0.0034	GT	1.8323	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr9]""]"	chr1:1574478-chr9:20715322	False			0	Read count too low: 1 < 8	FAIL	1
SSBP4--UBB	1	0	1.0	0.0	ONLY_REF_SPLICE	SSBP4^ENSG00000130511.16	chr19:18419149:+	UBB^ENSG00000170315.14	chr17:16381902:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1222:27341:9968	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9219	"[""INTERCHROMOSOMAL[chr19--chr17]""]"	chr19:18419149-chr17:16381902	False			0	Read count too low: 1 < 8	FAIL	1
SSBP1--ELF4	1	0	0.5	0.0	INCL_NON_REF_SPLICE	SSBP1^ENSG00000106028.11	chr7:141746442:+	ELF4^ENSG00000102034.17	chrX:130074752:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1258:42947:26909	.	NO_LDAS	0.0017	GT	1.7232	AG	1.9219	"[""INTERCHROMOSOMAL[chr7--chrX]""]"	chr7:141746442-chrX:130074752	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SRSF5--SLC11A1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SRSF5^ENSG00000100650.16	chr14:69768282:+	SLC11A1^ENSG00000018280.17	chr2:218394345:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1308:26702:9618	.	NO_LDAS	0.0034	GT	1.2729	AG	1.9086	"[""INTERCHROMOSOMAL[chr14--chr2]""]"	chr14:69768282-chr2:218394345	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SRGAP2--SCAF8	1	0	0.25	0.0	ONLY_REF_SPLICE	SRGAP2^ENSG00000266028.7	chr1:206206037:+	SCAF8^ENSG00000213079.10	chr6:154773989:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1326:39848:7474	.	YES_LDAS	0.0009	GT	1.9219	AG	1.8295	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:206206037-chr6:154773989	False			0	Read count too low: 1 < 8	FAIL	1
SRGAP2--AP000997.4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SRGAP2^ENSG00000266028.7	chr1:206458947:+	AP000997.4^ENSG00000279771.1	chr11:115659838:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:8273:2247	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr11]""]"	chr1:206458947-chr11:115659838	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SRGAP1--STX16	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SRGAP1^ENSG00000196935.9	chr12:64091347:+	STX16^ENSG00000124222.22	chr20:58668017:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1331:41037:25367	.	NO_LDAS	0.0034	GT	1.7056	AG	1.4566	"[""INTERCHROMOSOMAL[chr12--chr20]""]"	chr12:64091347-chr20:58668017	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SRC--PRKAG1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SRC^ENSG00000197122.12	chr20:37393997:+	PRKAG1^ENSG00000181929.13	chr12:49012919:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1272:27705:20267	.	NO_LDAS	0.0034	GT	1.7968	AG	1.9329	"[""INTERCHROMOSOMAL[chr20--chr12]""]"	chr20:37393997-chr12:49012919	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SRBD1--CHMP3	1	0	1.0	0.0	ONLY_REF_SPLICE	SRBD1^ENSG00000068784.13	chr2:45476993:-	CHMP3^ENSG00000115561.16	chr2:86542312:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2422:10198:7908	.	YES_LDAS	0.0034	GT	1.8256	AG	1.9329	"[""INTRACHROMOSOMAL[chr2:40.89Mb]""]"	chr2:45476993-chr2:86542312	False			0	Read count too low: 1 < 8	FAIL	1
SPSB4--PXYLP1	1	0	1.0	0.0	ONLY_REF_SPLICE	SPSB4^ENSG00000175093.5	chr3:141066798:+	PXYLP1^ENSG00000155893.13	chr3:141260123:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1247:24590:28997	.	YES_LDAS	0.0034	GT	1.9219	AG	1.9656	"[""TCGA_StarF2019"",""CCLE_StarF2019"",""INTRACHROMOSOMAL[chr3:0.08Mb]"",""NEIGHBORS[80115]""]"	chr3:141066798-chr3:141260123	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
SPOP--ATF7	1	0	1.0	0.0	ONLY_REF_SPLICE	SPOP^ENSG00000121067.19	chr17:49675895:-	ATF7^ENSG00000170653.19	chr12:53552637:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1178:9681:21584	.	NO_LDAS	0.0034	GT	1.9329	AG	1.8295	"[""INTERCHROMOSOMAL[chr17--chr12]""]"	chr17:49675895-chr12:53552637	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
SPICE1--CPEB4	1	0	0.25	0.0	INCL_NON_REF_SPLICE	SPICE1^ENSG00000163611.11	chr3:113515098:-	CPEB4^ENSG00000113742.14	chr5:173888409:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2311:31410:13737	.	NO_LDAS	0.0009	GT	1.4716	AG	1.1589	"[""INTERCHROMOSOMAL[chr3--chr5]""]"	chr3:113515098-chr5:173888409	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SPDYE2--GJB3	1	0	0.33	0.0	INCL_NON_REF_SPLICE	SPDYE2^ENSG00000205238.9	chr7:102553439:+	GJB3^ENSG00000188910.8	chr1:34785935:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:27098:1701	.	YES_LDAS	0.0011	GT	1.6895	AG	1.9656	"[""INTERCHROMOSOMAL[chr7--chr1]""]"	chr7:102553439-chr1:34785935	False			0	Read count too low: 1 < 8	FAIL	1
SPDL1--SPRED1	1	0	1.0	0.0	ONLY_REF_SPLICE	SPDL1^ENSG00000040275.17	chr5:169583889:+	SPRED1^ENSG00000166068.13	chr15:38339737:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2201:23377:17591	.	YES_LDAS	0.0034	GT	1.7968	AG	1.6895	"[""INTERCHROMOSOMAL[chr5--chr15]""]"	chr5:169583889-chr15:38339737	False			0	Read count too low: 1 < 8	FAIL	1
SPATA20--ZNF185	1	0	1.0	0.0	ONLY_REF_SPLICE	SPATA20^ENSG00000006282.21	chr17:50547369:+	ZNF185^ENSG00000147394.18	chrX:152917131:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2182:19105:25998	.	NO_LDAS	0.0034	GT	1.7465	AG	1.8062	"[""INTERCHROMOSOMAL[chr17--chrX]""]"	chr17:50547369-chrX:152917131	False			0	Read count too low: 1 < 8	FAIL	1
SOX9--DONSON	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SOX9^ENSG00000125398.8	chr17:72125918:+	DONSON^ENSG00000159147.18	chr21:33577704:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2155:32640:5806	.	NO_LDAS	0.0034	GT	0.9968	AG	0.971	"[""INTERCHROMOSOMAL[chr17--chr21]""]"	chr17:72125918-chr21:33577704	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SOX6--RANBP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SOX6^ENSG00000110693.18	chr11:15968998:-	RANBP1^ENSG00000099901.17	chr22:20126955:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2428:44581:26544	.	NO_LDAS	0.0034	GT	0.8366	AG	1.7968	"[""INTERCHROMOSOMAL[chr11--chr22]""]"	chr11:15968998-chr22:20126955	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SOSTDC1--ZNF385D	1	0	1.0	0.0	ONLY_REF_SPLICE	SOSTDC1^ENSG00000171243.8	chr7:16530187:-	ZNF385D^ENSG00000151789.12	chr3:21665028:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1244:28126:2303	.	YES_LDAS	0.0034	GT	1.9086	AG	1.9656	"[""INTERCHROMOSOMAL[chr7--chr3]""]"	chr7:16530187-chr3:21665028	False			0	Read count too low: 1 < 8	FAIL	1
SORBS3--SPAG5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SORBS3^ENSG00000120896.13	chr8:22561373:+	SPAG5^ENSG00000076382.17	chr17:28579483:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1149:14672:6241	.	NO_LDAS	0.0034	GT	1.585	AG	1.8256	"[""INTERCHROMOSOMAL[chr8--chr17]""]"	chr8:22561373-chr17:28579483	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SORBS1--BNIP5	1	0	1.0	0.0	ONLY_REF_SPLICE	SORBS1^ENSG00000095637.22	chr10:95339133:-	BNIP5^ENSG00000189325.7	chr6:36323533:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2171:7181:26026	.	NO_LDAS	0.0034	GT	1.7819	AG	1.8323	"[""INTERCHROMOSOMAL[chr10--chr6]""]"	chr10:95339133-chr6:36323533	False			0	Read count too low: 1 < 8	FAIL	1
SOD2--NFXL1	1	0	1.0	0.0	ONLY_REF_SPLICE	SOD2^ENSG00000112096.19	chr6:159682474:-	NFXL1^ENSG00000170448.12	chr4:47890703:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1267:15894:26797	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9899	"[""INTERCHROMOSOMAL[chr6--chr4]""]"	chr6:159682474-chr4:47890703	False			0	Read count too low: 1 < 8	FAIL	1
SNX3--PDSS2	1	0	1.0	0.0	ONLY_REF_SPLICE	SNX3^ENSG00000112335.15	chr6:108260760:-	PDSS2^ENSG00000164494.12	chr6:107212282:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2274:35350:20253	.	YES_LDAS	0.0034	GT	1.8323	AG	1.7968	"[""INTRACHROMOSOMAL[chr6:0.75Mb]""]"	chr6:108260760-chr6:107212282	False			0	Read count too low: 1 < 8	FAIL	1
SNX29--ARHGAP24	1	0	1.0	0.0	ONLY_REF_SPLICE	SNX29^ENSG00000048471.14	chr16:12356279:+	ARHGAP24^ENSG00000138639.18	chr4:85570522:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2488:45406:19286	.	YES_LDAS	0.0034	GT	1.8323	AG	1.9656	"[""INTERCHROMOSOMAL[chr16--chr4]""]"	chr16:12356279-chr4:85570522	False			0	Read count too low: 1 < 8	FAIL	1
SNX24--MAST4	1	0	1.0	0.0	ONLY_REF_SPLICE	SNX24^ENSG00000064652.11	chr5:122845693:+	MAST4^ENSG00000069020.18	chr5:67054404:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1162:30982:6016	.	YES_LDAS	0.0034	GT	1.7465	AG	1.8892	"[""INTRACHROMOSOMAL[chr5:55.67Mb]""]"	chr5:122845693-chr5:67054404	False			0	Read count too low: 1 < 8	FAIL	1
SNX1--EGFEM1P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SNX1^ENSG00000028528.15	chr15:64118244:+	EGFEM1P^ENSG00000206120.11	chr3:168810225:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2190:19389:12308	.	NO_LDAS	0.0034	GT	1.9329	AG	1.5329	"[""INTERCHROMOSOMAL[chr15--chr3]""]"	chr15:64118244-chr3:168810225	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SNORD65C--CHD2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SNORD65C^ENSG00000212264.1	chr7:23396529:+	CHD2^ENSG00000173575.22	chr15:92997257:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1165:50058:12770	.	NO_LDAS	0.0034	AT	1.0389	AC	1.8892	"[""INTERCHROMOSOMAL[chr7--chr15]""]"	chr7:23396529-chr15:92997257	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SNORA14A--SNORA14B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SNORA14A^ENSG00000201643.1	chr7:75943860:+	SNORA14B^ENSG00000207181.1	chr1:235127857:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1126:45018:12588	.	NO_LDAS	0.0034	GT	1.6402	AG	1.9086	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr7--chr1]""]"	chr7:75943860-chr1:235127857	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
SNHG14--DPYSL2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SNHG14^ENSG00000224078.15	chr15:25091111:+	DPYSL2^ENSG00000092964.18	chr8:26655615:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1366:28757:12336	.	NO_LDAS	0.0034	GT	1.8323	AG	1.9086	"[""INTERCHROMOSOMAL[chr15--chr8]""]"	chr15:25091111-chr8:26655615	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SNED1--TET2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SNED1^ENSG00000162804.14	chr2:241049933:+	TET2^ENSG00000168769.14	chr4:105243625:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1108:31629:28576	.	NO_LDAS	0.0034	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chr2--chr4]""]"	chr2:241049933-chr4:105243625	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SNAI2--CD3D	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SNAI2^ENSG00000019549.13	chr8:48920279:-	CD3D^ENSG00000167286.10	chr11:118342711:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2434:14632:19959	.	NO_LDAS	0.0034	AT	1.8323	AC	1.4295	"[""INTERCHROMOSOMAL[chr8--chr11]""]"	chr8:48920279-chr11:118342711	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SMYD4--STAU1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	SMYD4^ENSG00000186532.12	chr17:1829860:-	STAU1^ENSG00000124214.21	chr20:49124455:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1141:50462:17983	.	NO_LDAS	0.0017	GT	1.3996	AG	1.7819	"[""INTERCHROMOSOMAL[chr17--chr20]""]"	chr17:1829860-chr20:49124455	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SMIM13--AL022098.1	1	0	1.0	0.0	ONLY_REF_SPLICE	SMIM13^ENSG00000224531.6	chr6:11094389:+	AL022098.1^ENSG00000287920.1	chr6:11295769:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1208:39581:14746	.	YES_LDAS	0.0034	GT	1.6895	AG	1.9656	"[""INTRACHROMOSOMAL[chr6:0.15Mb]""]"	chr6:11094389-chr6:11295769	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
SMCHD1--DONSON	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SMCHD1^ENSG00000101596.16	chr18:2656256:+	DONSON^ENSG00000159147.18	chr21:33577704:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2118:48076:13709	.	NO_LDAS	0.0034	GT	1.5219	AG	0.971	"[""INTERCHROMOSOMAL[chr18--chr21]""]"	chr18:2656256-chr21:33577704	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SMC4--SMIM8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SMC4^ENSG00000113810.16	chr3:160412084:+	SMIM8^ENSG00000111850.11	chr6:87375942:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1298:31572:25395	.	NO_LDAS	0.0034	GT	1.4295	AG	1.9656	"[""INTERCHROMOSOMAL[chr3--chr6]""]"	chr3:160412084-chr6:87375942	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLK--ZMPSTE24	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLK^ENSG00000065613.15	chr10:104002906:+	ZMPSTE24^ENSG00000084073.10	chr1:40293524:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2483:50737:24597	.	NO_LDAS	0.0034	GT	1.3996	AG	1.5546	"[""INTERCHROMOSOMAL[chr10--chr1]""]"	chr10:104002906-chr1:40293524	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC4A3--NEU2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLC4A3^ENSG00000114923.17	chr2:219629695:+	NEU2^ENSG00000115488.3	chr2:233034748:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2109:41288:18515	.	NO_LDAS	0.0034	GT	1.7465	AG	1.4256	"[""INTRACHROMOSOMAL[chr2:13.39Mb]""]"	chr2:219629695-chr2:233034748	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC44A3-AS1--CARF	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC44A3-AS1^ENSG00000224081.9	chr1:94638437:-	CARF^ENSG00000138380.18	chr2:202952559:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1218:7181:11509	.	NO_LDAS	0.0034	GC	1.9329	AG	1.9899	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:94638437-chr2:202952559	False			0	Read count too low: 1 < 8	FAIL	1
SLC35G1--EXOC6	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC35G1^ENSG00000176273.15	chr10:93894211:+	EXOC6^ENSG00000138190.17	chr10:93056924:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2139:4818:21570	.	YES_LDAS	0.0034	GT	1.3996	AG	1.6895	"[""INTRACHROMOSOMAL[chr10:0.83Mb]""]"	chr10:93894211-chr10:93056924	False			0	Read count too low: 1 < 8	FAIL	1
SLC35F5--ACTR3	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC35F5^ENSG00000115084.15	chr2:113756370:-	ACTR3^ENSG00000115091.12	chr2:113927345:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1127:46951:19776	.	YES_LDAS	0.0034	GT	1.4566	AG	1.9219	"[""INTRACHROMOSOMAL[chr2:0.13Mb]""]"	chr2:113756370-chr2:113927345	False			0	Read count too low: 1 < 8	FAIL	1
SLC35F1--RBPJ	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLC35F1^ENSG00000196376.11	chr6:117907567:+	RBPJ^ENSG00000168214.21	chr4:26321255:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2161:9681:21640	.	NO_LDAS	0.0034	GT	1.231	AG	0.8366	"[""INTERCHROMOSOMAL[chr6--chr4]""]"	chr6:117907567-chr4:26321255	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC35B2--IQCE	1	0	0.5	0.0	INCL_NON_REF_SPLICE	SLC35B2^ENSG00000157593.19	chr6:44257299:-	IQCE^ENSG00000106012.18	chr7:2611284:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1147:16622:18473	.	NO_LDAS	0.0017	GT	1.3996	AG	1.7819	"[""INTERCHROMOSOMAL[chr6--chr7]""]"	chr6:44257299-chr7:2611284	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC2A4RG--DTX2P1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLC2A4RG^ENSG00000125520.14	chr20:63741409:+	DTX2P1^ENSG00000186704.9	chr7:76980987:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2123:6259:2766	.	YES_LDAS	0.0034	GC	1.9219	AG	1.7232	"[""INTERCHROMOSOMAL[chr20--chr7]""]"	chr20:63741409-chr7:76980987	False			0	Read count too low: 1 < 8	FAIL	1
SLC2A1--LINC01491	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLC2A1^ENSG00000117394.24	chr1:42929876:-	LINC01491^ENSG00000259572.7	chr15:47804856:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2384:40423:10122	.	NO_LDAS	0.0034	GT	1.5656	AG	1.8062	"[""INTERCHROMOSOMAL[chr1--chr15]""]"	chr1:42929876-chr15:47804856	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC27A3--DENND6B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLC27A3^ENSG00000143554.14	chr1:153775937:+	DENND6B^ENSG00000205593.12	chr22:50311882:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1367:51304:10500	.	NO_LDAS	0.0034	GT	1.4566	AG	1.3753	"[""INTERCHROMOSOMAL[chr1--chr22]""]"	chr1:153775937-chr22:50311882	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC25A36--PLSCR1	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC25A36^ENSG00000114120.14	chr3:140974005:+	PLSCR1^ENSG00000188313.13	chr3:146517167:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1343:46725:1560	.	YES_LDAS	0.0034	GT	1.9329	AG	1.6895	"[""CCLE_StarF2019"",""INTRACHROMOSOMAL[chr3:5.53Mb]""]"	chr3:140974005-chr3:146517167	False			0	Read count too low: 1 < 8	FAIL	1
SLC25A26--ATXN7	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC25A26^ENSG00000144741.18	chr3:66236700:+	ATXN7^ENSG00000163635.20	chr3:63988059:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1336:52007:9057	.	NO_LDAS	0.0034	GT	1.8892	AG	1.5656	"[""INTRACHROMOSOMAL[chr3:2.13Mb]""]"	chr3:66236700-chr3:63988059	False			0	Read count too low: 1 < 8	FAIL	1
SLC25A25--PLEKHA6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLC25A25^ENSG00000148339.12	chr9:128103839:+	PLEKHA6^ENSG00000143850.16	chr1:204257700:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1143:41685:28366	.	NO_LDAS	0.0034	GT	1.9656	AG	1.6729	"[""INTERCHROMOSOMAL[chr9--chr1]""]"	chr9:128103839-chr1:204257700	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC22A23--ZC3H3	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC22A23^ENSG00000137266.15	chr6:3455906:-	ZC3H3^ENSG00000014164.7	chr8:143441120:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1282:13556:3326	.	YES_LDAS	0.0034	GT	1.9086	AG	1.6729	"[""INTERCHROMOSOMAL[chr6--chr8]""]"	chr6:3455906-chr8:143441120	False			0	Read count too low: 1 < 8	FAIL	1
SLC20A2--GNA13	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SLC20A2^ENSG00000168575.10	chr8:42541131:-	GNA13^ENSG00000120063.10	chr17:65056613:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1324:46053:16203	.	NO_LDAS	0.0034	GT	1.4256	AG	0.9183	"[""INTERCHROMOSOMAL[chr8--chr17]""]"	chr8:42541131-chr17:65056613	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC16A9--INPP4B	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC16A9^ENSG00000165449.12	chr10:59709479:-	INPP4B^ENSG00000109452.12	chr4:142173809:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2488:5191:1589	.	YES_LDAS	0.0034	GT	1.7465	AG	1.9899	"[""INTERCHROMOSOMAL[chr10--chr4]""]"	chr10:59709479-chr4:142173809	False			0	Read count too low: 1 < 8	FAIL	1
SLC16A7--CCDC91	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC16A7^ENSG00000118596.12	chr12:59705018:+	CCDC91^ENSG00000123106.10	chr12:28305649:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1176:3476:19552	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9656	"[""INTRACHROMOSOMAL[chr12:31.01Mb]""]"	chr12:59705018-chr12:28305649	False			0	Read count too low: 1 < 8	FAIL	1
SLC16A2--FAM177A1	1	0	0.2	0.0	INCL_NON_REF_SPLICE	SLC16A2^ENSG00000147100.11	chrX:74532575:+	FAM177A1^ENSG00000151327.13	chr14:35081022:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1250:22924:14228	.	NO_LDAS	0.0007	GT	1.2419	AG	0.9183	"[""INTERCHROMOSOMAL[chrX--chr14]""]"	chrX:74532575-chr14:35081022	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC15A4--COL4A2	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC15A4^ENSG00000139370.12	chr12:128823398:-	COL4A2^ENSG00000134871.19	chr13:110424734:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2361:24105:22411	.	NO_LDAS	0.0034	GT	1.8323	AG	1.8323	"[""INTERCHROMOSOMAL[chr12--chr13]""]"	chr12:128823398-chr13:110424734	False			0	Read count too low: 1 < 8	FAIL	1
SLC12A7--GSTO1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	SLC12A7^ENSG00000113504.21	chr5:1060344:-	GSTO1^ENSG00000148834.13	chr10:104259670:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2315:45681:22761	.	NO_LDAS	0.0017	GT	1.3996	AG	1.9899	"[""INTERCHROMOSOMAL[chr5--chr10]""]"	chr5:1060344-chr10:104259670	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SLC11A2--UPF3A	1	0	0.33	0.0	ONLY_REF_SPLICE	SLC11A2^ENSG00000110911.17	chr12:51026315:-	UPF3A^ENSG00000169062.15	chr13:114298840:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1335:6865:16287	.	NO_LDAS	0.0011	GT	1.6402	AG	1.8062	"[""INTERCHROMOSOMAL[chr12--chr13]""]"	chr12:51026315-chr13:114298840	False			0	Read count too low: 1 < 8	FAIL	1
SLC10A7--RAPGEF2	1	0	1.0	0.0	ONLY_REF_SPLICE	SLC10A7^ENSG00000120519.15	chr4:146503849:-	RAPGEF2^ENSG00000109756.9	chr4:159304342:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1351:43384:29375	.	NO_LDAS	0.0034	GT	1.5301	AG	1.8323	"[""INTRACHROMOSOMAL[chr4:12.58Mb]""]"	chr4:146503849-chr4:159304342	False			0	Read count too low: 1 < 8	FAIL	1
SLAMF6--APPL2	1	0	1.0	0.0	ONLY_REF_SPLICE	SLAMF6^ENSG00000162739.14	chr1:160523144:-	APPL2^ENSG00000136044.12	chr12:105229223:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2383:22382:22032	.	YES_LDAS	0.0034	GT	1.8256	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr12]""]"	chr1:160523144-chr12:105229223	False			0	Read count too low: 1 < 8	FAIL	1
SIRT3--WDFY2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SIRT3^ENSG00000142082.15	chr11:223809:-	WDFY2^ENSG00000139668.9	chr13:51584742:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2484:28546:29403	.	NO_LDAS	0.0034	GT	1.1589	AG	1.7232	"[""INTERCHROMOSOMAL[chr11--chr13]""]"	chr11:223809-chr13:51584742	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SIRT2--PIK3C2B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SIRT2^ENSG00000068903.20	chr19:38880821:-	PIK3C2B^ENSG00000133056.13	chr1:204494615:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1245:44977:22551	.	NO_LDAS	0.0034	GT	1.7465	AG	1.3753	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:38880821-chr1:204494615	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SIN3B--UBN1	1	0	1.0	0.0	ONLY_REF_SPLICE	SIN3B^ENSG00000127511.10	chr19:16871398:+	UBN1^ENSG00000118900.15	chr16:4868833:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2161:14866:26418	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9086	"[""INTERCHROMOSOMAL[chr19--chr16]""]"	chr19:16871398-chr16:4868833	False			0	Read count too low: 1 < 8	FAIL	1
SHPK--BAZ2B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SHPK^ENSG00000197417.9	chr17:3610106:-	BAZ2B^ENSG00000123636.18	chr2:159429260:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1470:49831:15096	.	NO_LDAS	0.0034	GT	1.8062	AG	1.7968	"[""INTERCHROMOSOMAL[chr17--chr2]""]"	chr17:3610106-chr2:159429260	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SH3RF2--AP3B1	1	0	1.0	0.0	ONLY_REF_SPLICE	SH3RF2^ENSG00000156463.18	chr5:145938306:+	AP3B1^ENSG00000132842.14	chr5:78181662:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1204:18385:17128	.	YES_LDAS	0.0034	GT	1.9656	AG	1.5656	"[""INTRACHROMOSOMAL[chr5:67.64Mb]""]"	chr5:145938306-chr5:78181662	False			0	Read count too low: 1 < 8	FAIL	1
SH3KBP1--CDKL3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SH3KBP1^ENSG00000147010.18	chrX:19836151:-	CDKL3^ENSG00000006837.12	chr5:134308466:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2278:25586:21724	.	NO_LDAS	0.0034	GT	1.7819	AG	1.1589	"[""INTERCHROMOSOMAL[chrX--chr5]""]"	chrX:19836151-chr5:134308466	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SH3BP5L--IGBP1P1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SH3BP5L^ENSG00000175137.11	chr1:248824753:-	IGBP1P1^ENSG00000226677.3	chr14:34939811:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1493:22981:25928	.	NO_LDAS	0.0034	GT	1.9219	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr14]""]"	chr1:248824753-chr14:34939811	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SH2B2--HOXB13	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SH2B2^ENSG00000160999.10	chr7:102321603:+	HOXB13^ENSG00000159184.8	chr17:48726328:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1301:3387:8889	.	NO_LDAS	0.0034	GT	0.9968	AG	1.5329	"[""INTERCHROMOSOMAL[chr7--chr17]""]"	chr7:102321603-chr17:48726328	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SETX--MAGI2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SETX^ENSG00000107290.14	chr9:132330435:-	MAGI2^ENSG00000187391.22	chr7:79410875:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2218:50608:9267	.	NO_LDAS	0.0034	AT	1.6402	AC	1.7232	"[""INTERCHROMOSOMAL[chr9--chr7]""]"	chr9:132330435-chr7:79410875	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SENP2--TRA2B	1	0	1.0	0.0	ONLY_REF_SPLICE	SENP2^ENSG00000163904.13	chr3:185590169:+	TRA2B^ENSG00000136527.18	chr3:185923984:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1154:40382:28576	.	YES_LDAS	0.0034	GT	1.7232	AG	1.9329	"[""INTRACHROMOSOMAL[chr3:0.28Mb]""]"	chr3:185590169-chr3:185923984	False			0	Read count too low: 1 < 8	FAIL	1
SENP2--KRT23	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SENP2^ENSG00000163904.13	chr3:185630402:+	KRT23^ENSG00000108244.17	chr17:40936298:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2256:10829:12981	.	NO_LDAS	0.0034	GT	1.8323	AG	1.9656	"[""INTERCHROMOSOMAL[chr3--chr17]""]"	chr3:185630402-chr17:40936298	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SEMA5A--NID2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SEMA5A^ENSG00000112902.12	chr5:9379861:-	NID2^ENSG00000087303.18	chr14:52015273:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1205:29930:20393	.	NO_LDAS	0.0034	GT	1.9329	AG	1.371	"[""INTERCHROMOSOMAL[chr5--chr14]""]"	chr5:9379861-chr14:52015273	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SEMA4A--AC100803.3	1	0	0.5	0.0	INCL_NON_REF_SPLICE	SEMA4A^ENSG00000196189.13	chr1:156158490:+	AC100803.3^ENSG00000261655.1	chr8:141354982:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1428:35455:17885	.	NO_LDAS	0.0017	GT	1.9219	AG	1.5058	"[""INTERCHROMOSOMAL[chr1--chr8]""]"	chr1:156158490-chr8:141354982	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SEC61A1--PTOV1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SEC61A1^ENSG00000058262.10	chr3:128052501:+	PTOV1^ENSG00000104960.15	chr19:49855521:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1150:35083:8665	.	NO_LDAS	0.0034	GC	1.7968	AG	1.6402	"[""INTERCHROMOSOMAL[chr3--chr19]""]"	chr3:128052501-chr19:49855521	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SEC24B--CCDC91	1	0	1.0	0.0	ONLY_REF_SPLICE	SEC24B^ENSG00000138802.11	chr4:109473186:+	CCDC91^ENSG00000123106.10	chr12:28305649:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1168:41078:22775	.	YES_LDAS	0.0034	GT	1.5546	AG	1.9656	"[""INTERCHROMOSOMAL[chr4--chr12]""]"	chr4:109473186-chr12:28305649	False			0	Read count too low: 1 < 8	FAIL	1
SEC14L6--AC005064.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SEC14L6^ENSG00000214491.8	chr22:30546629:-	AC005064.1^ENSG00000234715.2	chr7:103445594:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1163:30286:7922	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9656	"[""INTERCHROMOSOMAL[chr22--chr7]""]"	chr22:30546629-chr7:103445594	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SDCCAG8--ODF2L	1	0	1.0	0.0	ONLY_REF_SPLICE	SDCCAG8^ENSG00000054282.16	chr1:243426558:+	ODF2L^ENSG00000122417.15	chr1:86387086:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1127:24768:4615	.	YES_LDAS	0.0034	GT	1.6895	AG	1.8295	"[""INTRACHROMOSOMAL[chr1:156.86Mb]""]"	chr1:243426558-chr1:86387086	False			0	Read count too low: 1 < 8	FAIL	1
SCEL--FAM184A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SCEL^ENSG00000136155.17	chr13:77612941:+	FAM184A^ENSG00000111879.20	chr6:119006576:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2204:41879:24947	.	NO_LDAS	0.0034	GT	1.7232	AG	1.9329	"[""INTERCHROMOSOMAL[chr13--chr6]""]"	chr13:77612941-chr6:119006576	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SCAPER--TAF2	1	0	1.0	0.0	ONLY_REF_SPLICE	SCAPER^ENSG00000140386.13	chr15:76574158:-	TAF2^ENSG00000064313.12	chr8:119785266:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1188:2044:25003	.	YES_LDAS	0.0034	GT	1.6402	AG	0.9056	"[""INTERCHROMOSOMAL[chr15--chr8]""]"	chr15:76574158-chr8:119785266	False			0	Read count too low: 1 < 8	FAIL	1
SCAF11--ZBTB18	1	0	1.0	0.0	ONLY_REF_SPLICE	SCAF11^ENSG00000139218.18	chr12:45990353:-	ZBTB18^ENSG00000179456.10	chr1:244053788:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1145:10886:24709	.	YES_LDAS	0.0034	GT	1.9086	AG	1.8062	"[""INTERCHROMOSOMAL[chr12--chr1]""]"	chr12:45990353-chr1:244053788	False			0	Read count too low: 1 < 8	FAIL	1
SBDSP1--AL590822.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SBDSP1^ENSG00000225648.5	chr7:72829570:+	AL590822.1^ENSG00000234396.3	chr1:2212512:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1204:1502:24513	.	NO_LDAS	0.0034	GT	1.4295	AG	0.5665	"[""INTERCHROMOSOMAL[chr7--chr1]""]"	chr7:72829570-chr1:2212512	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SARNP--NAAA	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SARNP^ENSG00000205323.9	chr12:55793157:-	NAAA^ENSG00000138744.16	chr4:75931304:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2137:17253:3985	.	NO_LDAS	0.0034	GT	1.9329	AG	1.9656	"[""INTERCHROMOSOMAL[chr12--chr4]""]"	chr12:55793157-chr4:75931304	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SAR1A--TYSND1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SAR1A^ENSG00000079332.15	chr10:70152263:-	TYSND1^ENSG00000156521.14	chr10:70140141:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1148:40779:18641	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8323	"[""INTRACHROMOSOMAL[chr10:0.00Mb]"",""NEIGHBORS[589]""]"	chr10:70152263-chr10:70140141	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
SAMM50--LINC01391	1	0	1.0	0.0	INCL_NON_REF_SPLICE	SAMM50^ENSG00000100347.15	chr22:43987464:+	LINC01391^ENSG00000244578.1	chr3:138940629:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2259:9470:10318	.	NO_LDAS	0.0034	GT	1.8323	AG	1.8892	"[""INTERCHROMOSOMAL[chr22--chr3]""]"	chr22:43987464-chr3:138940629	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SAMHD1--ARMC5	1	0	0.5	0.0	INCL_NON_REF_SPLICE	SAMHD1^ENSG00000101347.10	chr20:36916959:-	ARMC5^ENSG00000140691.18	chr16:31465259:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1164:23353:14130	.	NO_LDAS	0.0017	AT	1.8256	AC	1.8323	"[""INTERCHROMOSOMAL[chr20--chr16]""]"	chr20:36916959-chr16:31465259	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SAMD5--AL033504.1	1	0	1.0	0.0	ONLY_REF_SPLICE	SAMD5^ENSG00000203727.4	chr6:147509387:+	AL033504.1^ENSG00000227681.5	chr6:147947472:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1428:4285:20477	.	YES_LDAS	0.0034	GT	1.8295	AG	1.5058	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr6:0.09Mb]"",""NEIGHBORS[90682]""]"	chr6:147509387-chr6:147947472	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
SAFB--FGL2	1	0	0.25	0.0	INCL_NON_REF_SPLICE	SAFB^ENSG00000160633.13	chr19:5623394:+	FGL2^ENSG00000127951.8	chr7:77199709:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2306:13556:16385	.	NO_LDAS	0.0009	GT	1.6895	AG	1.371	"[""INTERCHROMOSOMAL[chr19--chr7]""]"	chr19:5623394-chr7:77199709	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
SAE1--SARS2	1	0	1.0	0.0	ONLY_REF_SPLICE	SAE1^ENSG00000142230.13	chr19:47169923:+	SARS2^ENSG00000104835.15	chr19:38916314:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:24065:23041	.	YES_LDAS	0.0034	GT	1.7819	AG	1.9329	"[""INTRACHROMOSOMAL[chr19:8.18Mb]""]"	chr19:47169923-chr19:38916314	False			0	Read count too low: 1 < 8	FAIL	1
SAE1--ENC1	1	0	1.0	0.0	ONLY_REF_SPLICE	SAE1^ENSG00000142230.13	chr19:47150375:+	ENC1^ENSG00000171617.15	chr5:74636498:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1247:9486:9225	.	YES_LDAS	0.0034	GT	1.9329	AG	1.6402	"[""INTERCHROMOSOMAL[chr19--chr5]""]"	chr19:47150375-chr5:74636498	False			0	Read count too low: 1 < 8	FAIL	1
RUFY3--NEBL	1	0	1.0	0.0	ONLY_REF_SPLICE	RUFY3^ENSG00000018189.13	chr4:70784879:+	NEBL^ENSG00000078114.19	chr10:20814043:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1427:18377:27595	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8295	"[""INTERCHROMOSOMAL[chr4--chr10]""]"	chr4:70784879-chr10:20814043	False			0	Read count too low: 1 < 8	FAIL	1
RTN3--NKX3-1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	RTN3^ENSG00000133318.14	chr11:63681683:+	NKX3-1^ENSG00000167034.10	chr8:23680497:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2161:19291:13373	.	NO_LDAS	0.0011	GT	1.5628	AG	1.1589	"[""INTERCHROMOSOMAL[chr11--chr8]""]"	chr11:63681683-chr8:23680497	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RTCA-AS1--SMIM13	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RTCA-AS1^ENSG00000224616.3	chr1:100252394:-	SMIM13^ENSG00000224531.6	chr6:11134542:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1173:5927:24835	.	YES_LDAS	0.0034	GC	1.9899	AG	1.9656	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:100252394-chr6:11134542	False			0	Read count too low: 1 < 8	FAIL	1
RSPH1--EN2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RSPH1^ENSG00000160188.10	chr21:42485669:-	EN2^ENSG00000164778.4	chr7:155463163:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1106:39209:1967	.	NO_LDAS	0.0034	GT	1.6895	AG	1.5656	"[""INTERCHROMOSOMAL[chr21--chr7]""]"	chr21:42485669-chr7:155463163	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RRAS--PPFIBP2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RRAS^ENSG00000126458.4	chr19:49636824:-	PPFIBP2^ENSG00000166387.13	chr11:7642353:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1335:12658:20939	.	NO_LDAS	0.0034	GT	1.8256	AG	1.7968	"[""INTERCHROMOSOMAL[chr19--chr11]""]"	chr19:49636824-chr11:7642353	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPS8--SNAPC4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPS8^ENSG00000142937.12	chr1:44776144:+	SNAPC4^ENSG00000165684.4	chr9:136378745:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1296:9511:18571	.	NO_LDAS	0.0034	GT	1.8256	AG	1.5546	"[""INTERCHROMOSOMAL[chr1--chr9]""]"	chr1:44776144-chr9:136378745	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPS6P14--RPS6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPS6P14^ENSG00000225482.1	chr10:48293330:+	RPS6^ENSG00000137154.13	chr9:19376385:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1169:25052:10234	.	YES_LDAS	0.0034	GT	1.2729	AG	1.7819	"[""INTERCHROMOSOMAL[chr10--chr9]""]"	chr10:48293330-chr9:19376385	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
RPS5--MED13	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPS5^ENSG00000083845.9	chr19:58394595:+	MED13^ENSG00000108510.10	chr17:61982955:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1171:25375:20939	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8295	"[""INTERCHROMOSOMAL[chr19--chr17]""]"	chr19:58394595-chr17:61982955	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPS3AP11--SEPTIN7	1	0	0.33	0.0	INCL_NON_REF_SPLICE	RPS3AP11^ENSG00000230116.1	chr1:42491744:+	SEPTIN7^ENSG00000122545.20	chr7:35832804:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1112:30795:8749	.	NO_LDAS	0.0011	GT	1.9329	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:42491744-chr7:35832804	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
RPS29--RPS29P26	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPS29^ENSG00000213741.11	chr14:49585950:-	RPS29P26^ENSG00000239320.1	chr19:39597994:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2390:23134:13779	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr14--chr19]""]"	chr14:49585950-chr19:39597994	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPS24P1--AC007182.2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RPS24P1^ENSG00000236477.1	chrY:12245255:+	AC007182.2^ENSG00000242951.1	chr14:75596002:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2324:27236:12784	.	NO_LDAS	0.0017	GT	1.6895	AG	1.9656	"[""INTERCHROMOSOMAL[chrY--chr14]""]"	chrY:12245255-chr14:75596002	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPS19--CD79A	1	0	1.0	0.0	ONLY_REF_SPLICE	RPS19^ENSG00000105372.8	chr19:41861212:+	CD79A^ENSG00000105369.10	chr19:41878990:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1174:17164:19132	.	YES_LDAS	0.0034	GT	1.9656	AG	1.6895	"[""INTRACHROMOSOMAL[chr19:0.00Mb]"",""NEIGHBORS[4354]""]"	chr19:41861212-chr19:41878990	True	pair|recurrent breakpoints; read_through|ribosomal genes|RPS19		0	Blacklisted	FAIL	1
RPS16--RFLNA	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPS16^ENSG00000105193.9	chr19:39435669:-	RFLNA^ENSG00000178882.15	chr12:124311890:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1314:17957:27119	.	NO_LDAS	0.0034	GT	1.8256	AG	1.8892	"[""INTERCHROMOSOMAL[chr19--chr12]""]"	chr19:39435669-chr12:124311890	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPS15A--RPS15AP15	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPS15A^ENSG00000134419.15	chr16:18788063:-	RPS15AP15^ENSG00000223739.1	chr2:65511947:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1296:43505:1168	.	YES_LDAS	0.0034	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chr16--chr2]""]"	chr16:18788063-chr2:65511947	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
RPS15A--PPIA	1	0	1.0	0.0	ONLY_REF_SPLICE	RPS15A^ENSG00000134419.15	chr16:18788981:-	PPIA^ENSG00000196262.15	chr7:44801287:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2305:7148:2233	.	YES_LDAS	0.0034	GT	1.8256	AG	1.8892	"[""INTERCHROMOSOMAL[chr16--chr7]""]"	chr16:18788981-chr7:44801287	False			0	Read count too low: 1 < 8	FAIL	1
RPS14--ELAVL4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPS14^ENSG00000164587.13	chr5:150444236:-	ELAVL4^ENSG00000162374.18	chr1:50201383:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2323:47534:11986	.	YES_LDAS	0.0034	GT	1.9329	AG	0.3534	"[""INTERCHROMOSOMAL[chr5--chr1]""]"	chr5:150444236-chr1:50201383	False			0	Read count too low: 1 < 8	FAIL	1
RPS12--HBE1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPS12^ENSG00000112306.8	chr6:132817055:+	HBE1^ENSG00000213931.7	chr11:5269588:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2193:18984:14438	.	NO_LDAS	0.0034	GT	1.7819	AG	1.9086	"[""INTERCHROMOSOMAL[chr6--chr11]""]"	chr6:132817055-chr11:5269588	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPRD1A--KIAA1328	1	0	1.0	0.0	ONLY_REF_SPLICE	RPRD1A^ENSG00000141425.18	chr18:36067254:-	KIAA1328^ENSG00000150477.15	chr18:36885557:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1229:21678:14424	.	YES_LDAS	0.0034	GT	1.6402	AG	1.3996	"[""INTRACHROMOSOMAL[chr18:0.76Mb]""]"	chr18:36067254-chr18:36885557	False			0	Read count too low: 1 < 8	FAIL	1
RPL9P18--EPHX2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPL9P18^ENSG00000213309.3	chr6:63616280:-	EPHX2^ENSG00000120915.14	chr8:27544517:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2237:33133:26530	.	NO_LDAS	0.0034	GT	1.5656	AG	1.9086	"[""INTERCHROMOSOMAL[chr6--chr8]""]"	chr6:63616280-chr8:27544517	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL7A--RPL7AP52	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RPL7A^ENSG00000148303.17	chr9:133350018:+	RPL7AP52^ENSG00000225354.1	chr10:94883083:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1391:5344:11663	.	NO_LDAS	0.0017	GT	1.7465	AG	1.7819	"[""INTERCHROMOSOMAL[chr9--chr10]""]"	chr9:133350018-chr10:94883083	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL7A--H2BC20P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPL7A^ENSG00000148303.17	chr9:133350052:+	H2BC20P^ENSG00000261716.2	chr1:149849751:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1106:15166:4629	.	NO_LDAS	0.0034	GT	1.9329	AG	1.9219	"[""INTERCHROMOSOMAL[chr9--chr1]""]"	chr9:133350052-chr1:149849751	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
RPL36A--RPL36AP54	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPL36A^ENSG00000241343.10	chrX:101391521:+	RPL36AP54^ENSG00000226107.1	chrX:134522767:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1320:22455:17927	.	NO_LDAS	0.0034	GT	1.2867	AG	1.8295	"[""INTRACHROMOSOMAL[chrX:33.13Mb]""]"	chrX:101391521-chrX:134522767	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL36--AP002528.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPL36^ENSG00000130255.13	chr19:5691667:+	AP002528.1^ENSG00000287397.1	chr6:101454123:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2196:23846:27960	.	NO_LDAS	0.0034	GC	1.8295	AG	1.4295	"[""INTERCHROMOSOMAL[chr19--chr6]""]"	chr19:5691667-chr6:101454123	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL23AP43--RPL23AP34	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RPL23AP43^ENSG00000227337.1	chr3:32786005:+	RPL23AP34^ENSG00000225991.1	chr2:28308249:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1420:36831:28702	.	NO_LDAS	0.0017	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr3--chr2]""]"	chr3:32786005-chr2:28308249	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL23AP43--AL365356.2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RPL23AP43^ENSG00000227337.1	chr3:32786005:+	AL365356.2^ENSG00000228685.1	chr10:5625022:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1420:36831:28702	.	NO_LDAS	0.0017	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr3--chr10]""]"	chr3:32786005-chr10:5625022	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL22P8--RPL22P18	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RPL22P8^ENSG00000237745.1	chr2:107915126:+	RPL22P18^ENSG00000230171.1	chr10:80126126:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1483:39767:20197	.	NO_LDAS	0.0017	AT	1.9086	AC	1.7465	"[""INTERCHROMOSOMAL[chr2--chr10]""]"	chr2:107915126-chr10:80126126	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL22P16--RPL22P22	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RPL22P16^ENSG00000213935.3	chr7:4865586:-	RPL22P22^ENSG00000213653.4	chrX:82506628:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1483:39767:20197	.	NO_LDAS	0.0017	AT	1.9656	AC	1.7465	"[""INTERCHROMOSOMAL[chr7--chrX]""]"	chr7:4865586-chrX:82506628	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL21P6--RPS6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPL21P6^ENSG00000239199.1	chr14:55413802:-	RPS6^ENSG00000137154.13	chr9:19376388:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1164:33781:25241	.	NO_LDAS	0.0034	GT	1.7968	AG	1.5628	"[""INTERCHROMOSOMAL[chr14--chr9]""]"	chr14:55413802-chr9:19376388	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL14P5--RPL14P1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPL14P5^ENSG00000225661.7	chrX:1009110:-	RPL14P1^ENSG00000139239.7	chr12:62965905:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2128:9834:12742	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chrY--chr12]""]"	chrX:1009110-chr12:62965905	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
RPL13AP3--EMC10	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RPL13AP3^ENSG00000177350.6	chr14:55766732:+	EMC10^ENSG00000161671.17	chr19:50488632:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1419:29266:1224	.	NO_LDAS	0.0017	GT	1.5656	AG	1.3996	"[""INTERCHROMOSOMAL[chr14--chr19]""]"	chr14:55766732-chr19:50488632	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL13A--NPHP4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPL13A^ENSG00000142541.18	chr19:49490295:+	NPHP4^ENSG00000131697.18	chr1:5879491:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1145:21476:15475	.	NO_LDAS	0.0034	GT	1.7465	AG	1.9656	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:49490295-chr1:5879491	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL12P8--RPL12P48	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPL12P8^ENSG00000219932.6	chr10:67874542:+	RPL12P48^ENSG00000270865.1	chr8:37983184:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1235:42024:18641	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8062	"[""INTERCHROMOSOMAL[chr10--chr8]""]"	chr10:67874542-chr8:37983184	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RPL10--RFXANK	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RPL10^ENSG00000147403.18	chrX:154402974:+	RFXANK^ENSG00000064490.14	chr19:19193939:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2319:43262:11958	.	NO_LDAS	0.0034	GT	1.7968	AG	1.8892	"[""INTERCHROMOSOMAL[chrX--chr19]""]"	chrX:154402974-chr19:19193939	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RORA--CHFR	1	0	1.0	0.0	ONLY_REF_SPLICE	RORA^ENSG00000069667.16	chr15:60592387:-	CHFR^ENSG00000072609.18	chr12:132945797:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1237:5450:18319	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9656	"[""INTERCHROMOSOMAL[chr15--chr12]""]"	chr15:60592387-chr12:132945797	False			0	Read count too low: 1 < 8	FAIL	1
RORA--B2M	1	0	1.0	0.0	ONLY_REF_SPLICE	RORA^ENSG00000069667.16	chr15:61229053:-	B2M^ENSG00000166710.21	chr15:44715423:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1170:12698:22635	.	YES_LDAS	0.0034	GT	1.5656	AG	1.9329	"[""INTRACHROMOSOMAL[chr15:15.77Mb]""]"	chr15:61229053-chr15:44715423	False			0	Read count too low: 1 < 8	FAIL	1
RORA--ARL14EP	1	0	1.0	0.0	ONLY_REF_SPLICE	RORA^ENSG00000069667.16	chr15:60592387:-	ARL14EP^ENSG00000152219.5	chr11:30330886:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1435:31200:29599	.	YES_LDAS	0.0034	GT	1.9086	AG	1.9656	"[""INTERCHROMOSOMAL[chr15--chr11]""]"	chr15:60592387-chr11:30330886	False			0	Read count too low: 1 < 8	FAIL	1
ROCK2--GALNT5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ROCK2^ENSG00000134318.14	chr2:11197180:-	GALNT5^ENSG00000136542.9	chr2:157312709:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2229:36669:28002	.	NO_LDAS	0.0034	GT	1.9086	AG	1.6402	"[""INTRACHROMOSOMAL[chr2:145.91Mb]""]"	chr2:11197180-chr2:157312709	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNU6-48P--POLR2C	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNU6-48P^ENSG00000206888.1	chr1:27325325:+	POLR2C^ENSG00000102978.13	chr16:57470035:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1236:4236:23672	.	NO_LDAS	0.0034	GT	1.7232	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr16]""]"	chr1:27325325-chr16:57470035	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNU6-301P--RNU6-1067P	1	0	0.33	0.0	INCL_NON_REF_SPLICE	RNU6-301P^ENSG00000207004.1	chr14:51724137:+	RNU6-1067P^ENSG00000207483.1	chr10:28667956:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2349:49969:4825	.	NO_LDAS	0.0011	GT	1.8892	AG	1.8295	"[""INTERCHROMOSOMAL[chr14--chr10]""]"	chr14:51724137-chr10:28667956	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNU6-13P--SLC10A3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNU6-13P^ENSG00000206975.1	chr8:56917190:+	SLC10A3^ENSG00000126903.16	chrX:154489130:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1323:47582:2065	.	YES_LDAS	0.0034	GT	1.7232	AG	1.9899	"[""INTERCHROMOSOMAL[chr8--chrX]""]"	chr8:56917190-chrX:154489130	False			0	Read count too low: 1 < 8	FAIL	1
RNU2-1--ARL4D	1	0	0.08	0.0	INCL_NON_REF_SPLICE	RNU2-1^ENSG00000274585.1	chr17:43233751:-	ARL4D^ENSG00000175906.5	chr17:43399661:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1340:26330:6255	.	YES_LDAS	0.0003	GT	1.4295	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:0.17Mb]""]"	chr17:43233751-chr17:43399661	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
RNLS--XIST	1	0	1.0	0.0	ONLY_REF_SPLICE	RNLS^ENSG00000184719.12	chr10:88572903:-	XIST^ENSG00000229807.12	chrX:73831274:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1490:47412:19342	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr10--chrX]""]"	chr10:88572903-chrX:73831274	False			0	Read count too low: 1 < 8	FAIL	1
RNF44--SNRK	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNF44^ENSG00000146083.12	chr5:176530848:-	SNRK^ENSG00000163788.14	chr3:43348080:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1360:11274:18740	.	NO_LDAS	0.0034	GT	1.8892	AG	1.6729	"[""INTERCHROMOSOMAL[chr5--chr3]""]"	chr5:176530848-chr3:43348080	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNF39--AL158071.3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNF39^ENSG00000204618.9	chr6:30075223:-	AL158071.3^ENSG00000237422.2	chr9:91119273:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1401:8855:14130	.	NO_LDAS	0.0034	GT	1.7819	AG	1.7056	"[""INTERCHROMOSOMAL[chr6--chr9]""]"	chr6:30075223-chr9:91119273	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNF34--CAB39	1	0	1.0	0.0	ONLY_REF_SPLICE	RNF34^ENSG00000170633.16	chr12:121417911:+	CAB39^ENSG00000135932.11	chr2:230759959:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1123:25674:29445	.	YES_LDAS	0.0034	GT	1.7465	AG	1.7465	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:121417911-chr2:230759959	False			0	Read count too low: 1 < 8	FAIL	1
RNF220--EIF5A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNF220^ENSG00000187147.18	chr1:44643357:+	EIF5A^ENSG00000132507.18	chr17:7312108:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1402:20634:16259	.	NO_LDAS	0.0034	GT	1.231	AG	0.3534	"[""INTERCHROMOSOMAL[chr1--chr17]""]"	chr1:44643357-chr17:7312108	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNF214--SCAPER	1	0	1.0	0.0	ONLY_REF_SPLICE	RNF214^ENSG00000167257.11	chr11:117246948:+	SCAPER^ENSG00000140386.13	chr15:76862533:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2328:32041:2948	.	YES_LDAS	0.0034	GT	1.5628	AG	1.8892	"[""INTERCHROMOSOMAL[chr11--chr15]""]"	chr11:117246948-chr15:76862533	False			0	Read count too low: 1 < 8	FAIL	1
RNF213--FAM72B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNF213^ENSG00000173821.19	chr17:80289837:+	FAM72B^ENSG00000188610.12	chr1:121184133:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1428:37243:1448	.	NO_LDAS	0.0034	GT	1.5628	AG	1.6895	"[""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:80289837-chr1:121184133	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNF19A--REV3L	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNF19A^ENSG00000034677.13	chr8:100259107:-	REV3L^ENSG00000009413.16	chr6:111416472:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1303:23183:3242	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr8--chr6]""]"	chr8:100259107-chr6:111416472	False			0	Read count too low: 1 < 8	FAIL	1
RNF185--RNF5	1	0	1.0	0.0	ONLY_REF_SPLICE	RNF185^ENSG00000138942.16	chr22:31192702:+	RNF5^ENSG00000204308.8	chr6:32179651:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1470:22908:29669	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8295	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr22--chr6]""]"	chr22:31192702-chr6:32179651	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
RNF170--CMTR1	1	0	1.0	0.0	ONLY_REF_SPLICE	RNF170^ENSG00000120925.16	chr8:42887728:-	CMTR1^ENSG00000137200.13	chr6:37458612:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1213:1485:3102	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr8--chr6]""]"	chr8:42887728-chr6:37458612	False			0	Read count too low: 1 < 8	FAIL	1
RNF152--AC105094.2	1	0	1.0	0.0	ONLY_REF_SPLICE	RNF152^ENSG00000176641.11	chr18:61892795:-	AC105094.2^ENSG00000267175.5	chr18:61693273:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2243:1785:15082	.	YES_LDAS	0.0034	GT	1.9086	AG	1.9219	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr18:0.06Mb]"",""NEIGHBORS[59235]""]"	chr18:61892795-chr18:61693273	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
RNF130--TPSAB1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNF130^ENSG00000113269.14	chr5:179913748:-	TPSAB1^ENSG00000172236.18	chr16:1241208:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1313:29404:4461	.	NO_LDAS	0.0034	GT	1.8323	AG	1.8892	"[""INTERCHROMOSOMAL[chr5--chr16]""]"	chr5:179913748-chr16:1241208	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNF126--CDC16	1	0	1.0	0.0	ONLY_REF_SPLICE	RNF126^ENSG00000070423.18	chr19:663047:-	CDC16^ENSG00000130177.16	chr13:114236645:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1114:24599:23153	.	YES_LDAS	0.0034	GT	1.3996	AG	1.8295	"[""INTERCHROMOSOMAL[chr19--chr13]""]"	chr19:663047-chr13:114236645	False			0	Read count too low: 1 < 8	FAIL	1
RNASET2--KCNN2	1	0	0.33	0.0	INCL_NON_REF_SPLICE	RNASET2^ENSG00000026297.16	chr6:166956926:-	KCNN2^ENSG00000080709.16	chr5:114363053:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1116:46425:21388	.	NO_LDAS	0.0011	GT	1.371	AG	1.1589	"[""INTERCHROMOSOMAL[chr6--chr5]""]"	chr6:166956926-chr5:114363053	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNASEH2B--THEM5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNASEH2B^ENSG00000136104.21	chr13:50971818:+	THEM5^ENSG00000196407.12	chr1:151847349:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1307:44330:13443	.	NO_LDAS	0.0034	GT	1.9656	AG	1.6049	"[""INTERCHROMOSOMAL[chr13--chr1]""]"	chr13:50971818-chr1:151847349	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNA5SP370--COL9A3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNA5SP370^ENSG00000199415.1	chr12:104125326:+	COL9A3^ENSG00000092758.18	chr20:62826807:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1120:8904:17801	.	NO_LDAS	0.0034	GT	1.7819	AG	1.7465	"[""INTERCHROMOSOMAL[chr12--chr20]""]"	chr12:104125326-chr20:62826807	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RNA5SP150--RNA5SP242	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RNA5SP150^ENSG00000199839.1	chr3:181822933:-	RNA5SP242^ENSG00000201041.1	chr7:128697497:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2373:27034:22467	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7465	"[""INTERCHROMOSOMAL[chr3--chr7]""]"	chr3:181822933-chr7:128697497	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RN7SL471P--RN7SL610P	1	0	0.33	0.0	INCL_NON_REF_SPLICE	RN7SL471P^ENSG00000263426.2	chr6:28977682:+	RN7SL610P^ENSG00000243847.3	chr2:23996883:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2265:31176:2822	.	NO_LDAS	0.0011	GT	1.5656	AG	1.9329	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr6--chr2]""]"	chr6:28977682-chr2:23996883	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
RN7SL417P--RN7SL665P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RN7SL417P^ENSG00000244056.3	chr15:84394176:+	RN7SL665P^ENSG00000264169.2	chr9:130400392:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2314:32705:29655	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr15--chr9]""]"	chr15:84394176-chr9:130400392	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
RN7SKP227--RN7SKP25	1	0	0.33	0.0	INCL_NON_REF_SPLICE	RN7SKP227^ENSG00000201315.1	chr3:36685340:+	RN7SKP25^ENSG00000199319.1	chr3:142673830:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2331:7270:27693	.	NO_LDAS	0.0011	GT	1.8892	AG	1.9086	"[""INTRACHROMOSOMAL[chr3:105.99Mb]""]"	chr3:36685340-chr3:142673830	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RN7SKP227--RN7SKP246	1	0	0.33	0.0	INCL_NON_REF_SPLICE	RN7SKP227^ENSG00000201315.1	chr3:36685340:+	RN7SKP246^ENSG00000201423.1	chr5:144535438:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2331:7270:27693	.	NO_LDAS	0.0011	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr3--chr5]""]"	chr3:36685340-chr5:144535438	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RN7SKP227--RN7SKP186	1	0	0.33	0.0	INCL_NON_REF_SPLICE	RN7SKP227^ENSG00000201315.1	chr3:36685340:+	RN7SKP186^ENSG00000202241.1	chr6:30864481:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2331:7270:27693	.	NO_LDAS	0.0011	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr3--chr6]""]"	chr3:36685340-chr6:30864481	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RMND5B--EPHA10	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RMND5B^ENSG00000145916.19	chr5:178147831:+	EPHA10^ENSG00000183317.17	chr1:37717579:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2137:39686:23027	.	NO_LDAS	0.0034	GT	1.8062	AG	1.9086	"[""INTERCHROMOSOMAL[chr5--chr1]""]"	chr5:178147831-chr1:37717579	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RIC1--AOPEP	1	0	1.0	0.0	ONLY_REF_SPLICE	RIC1^ENSG00000107036.12	chr9:5690038:+	AOPEP^ENSG00000148120.17	chr9:95060694:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2284:30836:22103	.	NO_LDAS	0.0034	GT	1.9086	AG	1.8892	"[""INTRACHROMOSOMAL[chr9:88.95Mb]""]"	chr9:5690038-chr9:95060694	False			0	Read count too low: 1 < 8	FAIL	1
RHOT2--AL356124.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RHOT2^ENSG00000140983.14	chr16:668569:+	AL356124.1^ENSG00000226149.6	chr6:129523216:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1349:35099:15082	.	NO_LDAS	0.0034	GT	1.9899	AG	1.9086	"[""INTERCHROMOSOMAL[chr16--chr6]""]"	chr16:668569-chr6:129523216	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RHEBL1--CTSB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RHEBL1^ENSG00000167550.11	chr12:49064715:-	CTSB^ENSG00000164733.22	chr8:11845222:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2112:48626:16175	.	NO_LDAS	0.0034	GT	1.9656	AG	1.7819	"[""INTERCHROMOSOMAL[chr12--chr8]""]"	chr12:49064715-chr8:11845222	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RHBDF1--WDR91	1	0	0.33	0.0	INCL_NON_REF_SPLICE	RHBDF1^ENSG00000007384.15	chr16:60079:-	WDR91^ENSG00000105875.14	chr7:135209746:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1430:27317:25143	.	NO_LDAS	0.0011	GT	1.7819	AG	1.9656	"[""INTERCHROMOSOMAL[chr16--chr7]""]"	chr16:60079-chr7:135209746	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RGS3--E4F1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RGS3^ENSG00000138835.22	chr9:113581025:+	E4F1^ENSG00000167967.16	chr16:2229570:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1418:22697:2177	.	NO_LDAS	0.0034	GT	1.5546	AG	1.7968	"[""INTERCHROMOSOMAL[chr9--chr16]""]"	chr9:113581025-chr16:2229570	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RGS3--AP006621.1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	RGS3^ENSG00000138835.22	chr9:113584073:+	AP006621.1^ENSG00000255108.1	chr11:824673:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1331:47542:10150	.	NO_LDAS	0.0011	GT	1.3996	AG	1.7819	"[""INTERCHROMOSOMAL[chr9--chr11]""]"	chr9:113584073-chr11:824673	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RGS22--TRMT13	1	0	1.0	0.0	ONLY_REF_SPLICE	RGS22^ENSG00000132554.20	chr8:100131132:-	TRMT13^ENSG00000122435.10	chr1:100136882:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1206:34185:21710	.	NO_LDAS	0.0034	GT	1.9899	AG	1.8323	"[""INTERCHROMOSOMAL[chr8--chr1]""]"	chr8:100131132-chr1:100136882	False			0	Read count too low: 1 < 8	FAIL	1
RFX1--AP000721.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RFX1^ENSG00000132005.9	chr19:13993525:-	AP000721.2^ENSG00000256824.1	chr11:64103581:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1491:51012:22018	.	NO_LDAS	0.0034	GT	1.8062	AG	0.9056	"[""INTERCHROMOSOMAL[chr19--chr11]""]"	chr19:13993525-chr11:64103581	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
REV3L--L3MBTL3	1	0	1.0	0.0	ONLY_REF_SPLICE	REV3L^ENSG00000009413.16	chr6:111482750:-	L3MBTL3^ENSG00000198945.8	chr6:130022227:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1223:19817:21402	.	YES_LDAS	0.0034	GT	1.5219	AG	1.8295	"[""INTRACHROMOSOMAL[chr6:18.53Mb]""]"	chr6:111482750-chr6:130022227	False			0	Read count too low: 1 < 8	FAIL	1
REST--NDUFB1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	REST^ENSG00000084093.19	chr4:56912657:+	NDUFB1^ENSG00000183648.11	chr14:92117642:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1384:40811:9057	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr4--chr14]""]"	chr4:56912657-chr14:92117642	False			0	Read count too low: 1 < 8	FAIL	1
REPS1--HECA	1	0	1.0	0.0	ONLY_REF_SPLICE	REPS1^ENSG00000135597.19	chr6:138987530:-	HECA^ENSG00000112406.5	chr6:139166284:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2124:5636:21416	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8892	"[""INTRACHROMOSOMAL[chr6:0.15Mb]""]"	chr6:138987530-chr6:139166284	False			0	Read count too low: 1 < 8	FAIL	1
RELL1--AC233699.1	1	0	0.25	0.0	ONLY_REF_SPLICE	RELL1^ENSG00000181826.10	chr4:37686200:-	AC233699.1^ENSG00000261499.2	chr17:36315195:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1346:22600:14087	.	NO_LDAS	0.0009	GT	1.5058	AG	1.9656	"[""INTERCHROMOSOMAL[chr4--chr17]""]"	chr4:37686200-chr17:36315195	False			0	Read count too low: 1 < 8	FAIL	1
RELCH--ZNF431	1	0	1.0	0.0	ONLY_REF_SPLICE	RELCH^ENSG00000134444.15	chr18:62232427:+	ZNF431^ENSG00000196705.8	chr19:21189865:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1277:15344:21864	.	YES_LDAS	0.0034	GT	1.7056	AG	1.7232	"[""INTERCHROMOSOMAL[chr18--chr19]""]"	chr18:62232427-chr19:21189865	False			0	Read count too low: 1 < 8	FAIL	1
RDH13--CIRBP	1	0	1.0	0.0	ONLY_REF_SPLICE	RDH13^ENSG00000160439.16	chr19:55047387:-	CIRBP^ENSG00000099622.14	chr19:1270928:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1334:33570:17394	.	YES_LDAS	0.0034	GT	1.6402	AG	1.8892	"[""INTRACHROMOSOMAL[chr19:53.76Mb]""]"	chr19:55047387-chr19:1270928	False			0	Read count too low: 1 < 8	FAIL	1
RCOR3--EXOC4	1	0	1.0	0.0	ONLY_REF_SPLICE	RCOR3^ENSG00000117625.14	chr1:211267870:+	EXOC4^ENSG00000131558.15	chr7:133288922:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1102:13426:28548	.	NO_LDAS	0.0034	GT	1.7819	AG	1.7968	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:211267870-chr7:133288922	False			0	Read count too low: 1 < 8	FAIL	1
RCOR1--GARNL3	1	0	1.0	0.0	ONLY_REF_SPLICE	RCOR1^ENSG00000089902.10	chr14:102593325:+	GARNL3^ENSG00000136895.19	chr9:127311636:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2391:45665:28030	.	YES_LDAS	0.0034	GT	1.7232	AG	1.9656	"[""INTERCHROMOSOMAL[chr14--chr9]""]"	chr14:102593325-chr9:127311636	False			0	Read count too low: 1 < 8	FAIL	1
RCC1L--TOP2B	1	0	1.0	0.0	ONLY_REF_SPLICE	RCC1L^ENSG00000274523.5	chr7:75052711:-	TOP2B^ENSG00000077097.15	chr3:25645470:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1282:9478:8286	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8295	"[""INTERCHROMOSOMAL[chr7--chr3]""]"	chr7:75052711-chr3:25645470	False			0	Read count too low: 1 < 8	FAIL	1
RC3H1--C12orf57	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RC3H1^ENSG00000135870.12	chr1:173943442:-	C12orf57^ENSG00000111678.11	chr12:6943435:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2354:32009:15839	.	NO_LDAS	0.0034	GT	1.8892	AG	1.5329	"[""INTERCHROMOSOMAL[chr1--chr12]""]"	chr1:173943442-chr12:6943435	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RBPJ--LIMCH1	1	0	1.0	0.0	ONLY_REF_SPLICE	RBPJ^ENSG00000168214.21	chr4:26362628:+	LIMCH1^ENSG00000064042.18	chr4:41661420:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1255:23676:14017	.	YES_LDAS	0.0034	GT	1.7819	AG	1.7465	"[""INTRACHROMOSOMAL[chr4:14.92Mb]""]"	chr4:26362628-chr4:41661420	False			0	Read count too low: 1 < 8	FAIL	1
RBMY2TP--CRAMP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RBMY2TP^ENSG00000237269.1	chrY:21430784:-	CRAMP1^ENSG00000007545.16	chr16:1662490:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1408:5344:24611	.	NO_LDAS	0.0034	GT	1.6402	AG	1.9899	"[""INTERCHROMOSOMAL[chrY--chr16]""]"	chrY:21430784-chr16:1662490	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RBMS3--OSBPL10	1	0	1.0	0.0	ONLY_REF_SPLICE	RBMS3^ENSG00000144642.22	chr3:29281756:+	OSBPL10^ENSG00000144645.15	chr3:31876512:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1265:6728:18487	.	NO_LDAS	0.0034	GT	1.7819	AG	1.9656	"[""INTRACHROMOSOMAL[chr3:1.65Mb]""]"	chr3:29281756-chr3:31876512	False			0	Read count too low: 1 < 8	FAIL	1
RBMS1--CLIP4	1	0	1.0	0.0	ONLY_REF_SPLICE	RBMS1^ENSG00000153250.20	chr2:160367216:-	CLIP4^ENSG00000115295.20	chr2:29121374:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2231:22859:6269	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9086	"[""INTRACHROMOSOMAL[chr2:131.08Mb]""]"	chr2:160367216-chr2:29121374	False			0	Read count too low: 1 < 8	FAIL	1
RBM3--SSX4	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RBM3^ENSG00000102317.18	chrX:48576604:+	SSX4^ENSG00000268009.6	chrX:48384050:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1192:5587:16652	.	NO_LDAS	0.0017	GT	1.8892	AG	1.9086	"[""INTRACHROMOSOMAL[chrX:0.18Mb]""]"	chrX:48576604-chrX:48384050	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RBBP4--TULP4	1	0	1.0	0.0	ONLY_REF_SPLICE	RBBP4^ENSG00000162521.19	chr1:32657572:+	TULP4^ENSG00000130338.13	chr6:158461563:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1368:3451:21976	.	NO_LDAS	0.0034	GT	1.5628	AG	1.9219	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:32657572-chr6:158461563	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
RB1CC1--PRKDC	1	0	1.0	0.0	ONLY_REF_SPLICE	RB1CC1^ENSG00000023287.13	chr8:52714075:-	PRKDC^ENSG00000253729.8	chr8:47807326:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1345:4568:22201	.	YES_LDAS	0.0034	GT	1.7232	AG	1.7232	"[""INTRACHROMOSOMAL[chr8:4.66Mb]""]"	chr8:52714075-chr8:47807326	False			0	Read count too low: 1 < 8	FAIL	1
RASGRF1--MCC	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RASGRF1^ENSG00000058335.16	chr15:79090750:-	MCC^ENSG00000171444.18	chr5:113085310:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1232:16929:11916	.	NO_LDAS	0.0034	GT	1.4566	AG	1.9656	"[""INTERCHROMOSOMAL[chr15--chr5]""]"	chr15:79090750-chr5:113085310	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RASGEF1A--SEC16A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RASGEF1A^ENSG00000198915.12	chr10:43196211:-	SEC16A^ENSG00000148396.18	chr9:136441637:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1180:38538:8202	.	NO_LDAS	0.0034	GT	1.585	AG	1.9329	"[""INTERCHROMOSOMAL[chr10--chr9]""]"	chr10:43196211-chr9:136441637	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAPGEF3--TMEM159	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RAPGEF3^ENSG00000079337.16	chr12:47744599:-	TMEM159^ENSG00000011638.11	chr16:21179488:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1460:2189:21724	.	NO_LDAS	0.0034	GT	1.8256	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr16]""]"	chr12:47744599-chr16:21179488	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAPGEF3--AC090857.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RAPGEF3^ENSG00000079337.16	chr12:47749390:-	AC090857.1^ENSG00000254816.1	chr11:21170096:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1226:50406:19090	.	NO_LDAS	0.0034	GT	1.8892	AG	1.7056	"[""INTERCHROMOSOMAL[chr12--chr11]""]"	chr12:47749390-chr11:21170096	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAP1B--AC090114.3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RAP1B^ENSG00000127314.18	chr12:68671670:+	AC090114.3^ENSG00000280828.1	chr7:128577953:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2372:35649:18950	.	NO_LDAS	0.0034	GT	1.5058	AG	1.9086	"[""INTERCHROMOSOMAL[chr12--chr7]""]"	chr12:68671670-chr7:128577953	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RANBP10--UBE2D2	1	0	1.0	0.0	ONLY_REF_SPLICE	RANBP10^ENSG00000141084.11	chr16:67805428:-	UBE2D2^ENSG00000131508.16	chr5:139600372:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2468:35536:17464	.	NO_LDAS	0.0034	GT	1.5628	AG	1.8256	"[""INTERCHROMOSOMAL[chr16--chr5]""]"	chr16:67805428-chr5:139600372	False			0	Read count too low: 1 < 8	FAIL	1
RALGAPB--IHH	1	0	0.17	0.0	INCL_NON_REF_SPLICE	RALGAPB^ENSG00000170471.15	chr20:38539825:+	IHH^ENSG00000163501.7	chr2:219060784:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1275:1324:3298	.	NO_LDAS	0.0006	GT	1.9656	AG	0.8366	"[""INTERCHROMOSOMAL[chr20--chr2]""]"	chr20:38539825-chr2:219060784	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RALGAPB--GSDMD	1	0	0.17	0.0	INCL_NON_REF_SPLICE	RALGAPB^ENSG00000170471.15	chr20:38539825:+	GSDMD^ENSG00000104518.11	chr8:143553398:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1275:1324:3298	.	NO_LDAS	0.0006	GT	1.9656	AG	0.8366	"[""INTERCHROMOSOMAL[chr20--chr8]""]"	chr20:38539825-chr8:143553398	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RALGAPA2--TCOF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RALGAPA2^ENSG00000188559.15	chr20:20472894:-	TCOF1^ENSG00000070814.22	chr5:150369529:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2246:28433:4237	.	NO_LDAS	0.0034	GT	1.8892	AG	1.7232	"[""INTERCHROMOSOMAL[chr20--chr5]""]"	chr20:20472894-chr5:150369529	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAD21--AL691420.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RAD21^ENSG00000164754.15	chr8:116852024:-	AL691420.1^ENSG00000228714.4	chr9:115325039:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1102:51676:2009	.	NO_LDAS	0.0034	GT	1.6049	AG	1.8892	"[""INTERCHROMOSOMAL[chr8--chr9]""]"	chr8:116852024-chr9:115325039	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAD1--AC138409.2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	RAD1^ENSG00000113456.19	chr5:34908894:-	AC138409.2^ENSG00000215158.9	chr5:34182867:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2180:42583:28828	.	YES_LDAS	0.0017	GT	1.9219	AG	1.9656	"[""INTRACHROMOSOMAL[chr5:0.66Mb]""]"	chr5:34908894-chr5:34182867	False			0	Read count too low: 1 < 8	FAIL	1
RABL3--SLC38A9	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RABL3^ENSG00000144840.10	chr3:120689272:-	SLC38A9^ENSG00000177058.12	chr5:55652723:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1424:37486:27007	.	NO_LDAS	0.0034	GT	1.8062	AG	1.8892	"[""INTERCHROMOSOMAL[chr3--chr5]""]"	chr3:120689272-chr5:55652723	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RABGGTB--ZC3HAV1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RABGGTB^ENSG00000137955.16	chr1:75787631:+	ZC3HAV1^ENSG00000105939.14	chr7:139047755:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1310:3985:19202	.	NO_LDAS	0.0034	GT	1.4566	AG	1.7819	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:75787631-chr7:139047755	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAB3GAP1--R3HDM1	1	0	1.0	0.0	ONLY_REF_SPLICE	RAB3GAP1^ENSG00000115839.18	chr2:135153876:+	R3HDM1^ENSG00000048991.16	chr2:135631718:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2110:31305:22018	.	YES_LDAS	0.0034	GT	1.4295	AG	1.9086	"[""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr2:0.36Mb]""]"	chr2:135153876-chr2:135631718	False			0	Read count too low: 1 < 8	FAIL	1
RAB30-DT--HADHB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	RAB30-DT^ENSG00000246067.8	chr11:83106914:+	HADHB^ENSG00000138029.14	chr2:26254430:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1168:41798:1406	.	NO_LDAS	0.0034	GC	1.9086	AG	1.9086	"[""INTERCHROMOSOMAL[chr11--chr2]""]"	chr11:83106914-chr2:26254430	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
RAB30--KREMEN1	1	0	1.0	0.0	ONLY_REF_SPLICE	RAB30^ENSG00000137502.10	chr11:83060077:-	KREMEN1^ENSG00000183762.13	chr22:29137342:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1394:48844:3999	.	YES_LDAS	0.0034	GT	1.9329	AG	1.5656	"[""INTERCHROMOSOMAL[chr11--chr22]""]"	chr11:83060077-chr22:29137342	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
RAB11FIP1--NME3	1	0	0.25	0.0	INCL_NON_REF_SPLICE	RAB11FIP1^ENSG00000156675.16	chr8:37872172:-	NME3^ENSG00000103024.7	chr16:1771641:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1119:52048:6689	.	NO_LDAS	0.0009	GC	1.8295	AG	1.6402	"[""INTERCHROMOSOMAL[chr8--chr16]""]"	chr8:37872172-chr16:1771641	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PUM2--FRRS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PUM2^ENSG00000055917.16	chr2:20294376:-	FRRS1^ENSG00000156869.14	chr1:99704395:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2287:12601:6465	.	NO_LDAS	0.0034	GT	1.8256	AG	1.7968	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:20294376-chr1:99704395	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PTPRZ1--PTPRQ	1	0	1.0	0.0	ONLY_REF_SPLICE	PTPRZ1^ENSG00000106278.12	chr7:122040979:+	PTPRQ^ENSG00000139304.16	chr12:80673169:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1352:35496:21626	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7465	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr7--chr12]""]"	chr7:122040979-chr12:80673169	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
PTPRC--CSKMT	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PTPRC^ENSG00000081237.20	chr1:198756155:+	CSKMT^ENSG00000214756.8	chr11:62667692:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1335:26880:5750	.	NO_LDAS	0.0034	GT	1.9899	AG	1.9656	"[""INTERCHROMOSOMAL[chr1--chr11]""]"	chr1:198756155-chr11:62667692	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PTPN2--FAM120A	1	0	0.5	0.0	ONLY_REF_SPLICE	PTPN2^ENSG00000175354.20	chr18:12869025:-	FAM120A^ENSG00000048828.17	chr9:93476256:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1193:35415:15517	.	YES_LDAS	0.0017	GT	1.9329	AG	1.9329	"[""INTERCHROMOSOMAL[chr18--chr9]""]"	chr18:12869025-chr9:93476256	False			0	Read count too low: 1 < 8	FAIL	1
PTPN2--EIF4E	1	0	0.33	0.0	ONLY_REF_SPLICE	PTPN2^ENSG00000175354.20	chr18:12869025:-	EIF4E^ENSG00000151247.13	chr4:98901982:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2113:33295:20197	.	YES_LDAS	0.0011	GT	1.9329	AG	1.6895	"[""INTERCHROMOSOMAL[chr18--chr4]""]"	chr18:12869025-chr4:98901982	False			0	Read count too low: 1 < 8	FAIL	1
PTPN14--MROH1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PTPN14^ENSG00000152104.12	chr1:214390988:-	MROH1^ENSG00000179832.17	chr8:144261307:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1172:31726:15713	.	NO_LDAS	0.0034	GT	1.8892	AG	1.5058	"[""INTERCHROMOSOMAL[chr1--chr8]""]"	chr1:214390988-chr8:144261307	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
PTPN13--AC010538.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PTPN13^ENSG00000163629.13	chr4:86594789:+	AC010538.1^ENSG00000275734.2	chr16:89684543:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2213:11671:18277	.	YES_LDAS	0.0034	GT	1.8323	AG	1.9086	"[""INTERCHROMOSOMAL[chr4--chr16]""]"	chr4:86594789-chr16:89684543	False			0	Read count too low: 1 < 8	FAIL	1
PTPN1--RYR3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PTPN1^ENSG00000196396.10	chr20:50510590:+	RYR3^ENSG00000198838.14	chr15:33580073:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1447:16322:16470	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8323	"[""INTERCHROMOSOMAL[chr20--chr15]""]"	chr20:50510590-chr15:33580073	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PTP4A3--ZNF653	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PTP4A3^ENSG00000184489.13	chr8:141422273:+	ZNF653^ENSG00000161914.10	chr19:11505636:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2229:27543:11972	.	NO_LDAS	0.0034	GT	1.5628	AG	1.9329	"[""INTERCHROMOSOMAL[chr8--chr19]""]"	chr8:141422273-chr19:11505636	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PTMAP11--AC245052.4	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PTMAP11^ENSG00000269907.1	chr9:96910320:+	AC245052.4^ENSG00000237017.1	chr19:54124602:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1238:22900:10374	.	NO_LDAS	0.0017	GT	1.7056	AG	1.9086	"[""INTERCHROMOSOMAL[chr9--chr19]""]"	chr9:96910320-chr19:54124602	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PTDSS1--SPATA5	1	0	1.0	0.0	ONLY_REF_SPLICE	PTDSS1^ENSG00000156471.13	chr8:96273390:+	SPATA5^ENSG00000145375.9	chr4:123028186:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2255:8475:18684	.	YES_LDAS	0.0034	GT	1.9086	AG	1.9656	"[""INTERCHROMOSOMAL[chr8--chr4]""]"	chr8:96273390-chr4:123028186	False			0	Read count too low: 1 < 8	FAIL	1
PTBP1--PLB1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PTBP1^ENSG00000011304.22	chr19:806556:+	PLB1^ENSG00000163803.13	chr2:28529382:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1288:30771:20673	.	NO_LDAS	0.0034	GT	1.7056	AG	1.8323	"[""INTERCHROMOSOMAL[chr19--chr2]""]"	chr19:806556-chr2:28529382	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PTBP1--C19orf25	1	0	1.0	0.0	ONLY_REF_SPLICE	PTBP1^ENSG00000011304.22	chr19:799443:+	C19orf25^ENSG00000119559.17	chr19:1461824:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1495:23118:14760	.	YES_LDAS	0.0034	GT	1.9656	AG	1.7232	"[""INTRACHROMOSOMAL[chr19:0.65Mb]""]"	chr19:799443-chr19:1461824	False			0	Read count too low: 1 < 8	FAIL	1
PSMD13--ZNF544	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PSMD13^ENSG00000185627.18	chr11:252879:+	ZNF544^ENSG00000198131.14	chr19:58260851:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1158:43416:26993	.	NO_LDAS	0.0034	GT	1.8256	AG	1.9086	"[""INTERCHROMOSOMAL[chr11--chr19]""]"	chr11:252879-chr19:58260851	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PSMC5--CHMP1AP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PSMC5^ENSG00000087191.13	chr17:63830935:+	CHMP1AP1^ENSG00000226662.2	chr1:27686996:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2424:2553:11061	.	NO_LDAS	0.0034	GT	1.7819	AG	1.7232	"[""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:63830935-chr1:27686996	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PSMB7--NEK6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PSMB7^ENSG00000136930.13	chr9:124353559:-	NEK6^ENSG00000119408.17	chr9:124347709:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:10522:19622	.	YES_LDAS	0.0034	GT	1.7968	AG	1.8892	"[""INTRACHROMOSOMAL[chr9:0.00Mb]"",""LOCAL_INVERSION:-:+:[158]""]"	chr9:124353559-chr9:124347709	False			0	Read count too low: 1 < 8	FAIL	1
PSMB3--AIMP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PSMB3^ENSG00000277791.5	chr17:38762509:+	AIMP1^ENSG00000164022.17	chr4:106319489:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2477:14187:15517	.	NO_LDAS	0.0034	GT	1.9899	AG	1.5546	"[""INTERCHROMOSOMAL[chr17--chr4]""]"	chr17:38762509-chr4:106319489	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PSMB1--EXOC2	1	0	1.0	0.0	ONLY_REF_SPLICE	PSMB1^ENSG00000008018.9	chr6:170553130:-	EXOC2^ENSG00000112685.14	chr6:637861:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2353:10514:28800	.	YES_LDAS	0.0034	GT	1.9656	AG	1.5656	"[""INTRACHROMOSOMAL[chr6:169.84Mb]""]"	chr6:170553130-chr6:637861	False			0	Read count too low: 1 < 8	FAIL	1
PSMA7--CD93	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PSMA7^ENSG00000101182.15	chr20:62137364:-	CD93^ENSG00000125810.10	chr20:23082845:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2484:34792:12392	.	NO_LDAS	0.0034	GT	1.9086	AG	1.7056	"[""INTRACHROMOSOMAL[chr20:39.05Mb]""]"	chr20:62137364-chr20:23082845	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PSMA3-AS1--PTPRA	1	0	1.0	0.0	ONLY_REF_SPLICE	PSMA3-AS1^ENSG00000257621.8	chr14:58291635:-	PTPRA^ENSG00000132670.20	chr20:2986765:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1180:47558:23406	.	NO_LDAS	0.0034	GT	1.6895	AG	1.8295	"[""INTERCHROMOSOMAL[chr14--chr20]""]"	chr14:58291635-chr20:2986765	False			0	Read count too low: 1 < 8	FAIL	1
PSMA1--XKR5	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PSMA1^ENSG00000129084.18	chr11:14507656:-	XKR5^ENSG00000275591.5	chr8:6821962:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2310:21694:11902	.	NO_LDAS	0.0017	GT	1.5058	AG	1.9086	"[""INTERCHROMOSOMAL[chr11--chr8]""]"	chr11:14507656-chr8:6821962	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PSG1--CEACAM5	1	0	0.11	0.0	ONLY_REF_SPLICE	PSG1^ENSG00000231924.10	chr19:42868756:-	CEACAM5^ENSG00000105388.16	chr19:41718128:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1107:37696:10472	.	NO_LDAS	0.0004	GT	1.8323	AG	1.8062	"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr19:1.14Mb]""]"	chr19:42868756-chr19:41718128	False			0	Excluded annotation pattern: DGD_PARALOGS	FAIL	1
PRPF4B--NSD3	1	0	1.0	0.0	ONLY_REF_SPLICE	PRPF4B^ENSG00000112739.17	chr6:4021466:+	NSD3^ENSG00000147548.17	chr8:38348215:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1172:21411:4909	.	YES_LDAS	0.0034	GT	1.5656	AG	1.7819	"[""INTERCHROMOSOMAL[chr6--chr8]""]"	chr6:4021466-chr8:38348215	False			0	Read count too low: 1 < 8	FAIL	1
PRODH--ZDHHC5	1	0	1.0	0.0	ONLY_REF_SPLICE	PRODH^ENSG00000100033.17	chr22:18936015:-	ZDHHC5^ENSG00000156599.11	chr11:57672021:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2215:21589:24471	.	YES_LDAS	0.0034	GT	1.5219	AG	1.8892	"[""INTERCHROMOSOMAL[chr22--chr11]""]"	chr22:18936015-chr11:57672021	False			0	Read count too low: 1 < 8	FAIL	1
PRKDC--CHCHD7	1	0	1.0	0.0	ONLY_REF_SPLICE	PRKDC^ENSG00000253729.8	chr8:47885944:-	CHCHD7^ENSG00000170791.18	chr8:56216433:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2404:6145:6913	.	YES_LDAS	0.0034	GT	1.7232	AG	1.9656	"[""INTRACHROMOSOMAL[chr8:8.25Mb]""]"	chr8:47885944-chr8:56216433	False			0	Read count too low: 1 < 8	FAIL	1
PRKDC--BORCS5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PRKDC^ENSG00000253729.8	chr8:47840016:-	BORCS5^ENSG00000165714.11	chr12:12465618:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1330:15149:19903	.	NO_LDAS	0.0034	GT	1.8323	AG	1.8892	"[""INTERCHROMOSOMAL[chr8--chr12]""]"	chr8:47840016-chr12:12465618	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PRKD1--PRKD3	1	0	1.0	0.0	ONLY_REF_SPLICE	PRKD1^ENSG00000184304.16	chr14:29636290:-	PRKD3^ENSG00000115825.11	chr2:37277989:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1180:1534:22439	.	NO_LDAS	0.0034	GT	1.6895	AG	1.6895	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr14--chr2]""]"	chr14:29636290-chr2:37277989	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
PRKAG3--STARD3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PRKAG3^ENSG00000115592.11	chr2:218826971:-	STARD3^ENSG00000131748.16	chr17:39657775:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2130:18571:6213	.	NO_LDAS	0.0034	GT	1.9656	AG	1.5219	"[""INTERCHROMOSOMAL[chr2--chr17]""]"	chr2:218826971-chr17:39657775	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PRKAG3--DNHD1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PRKAG3^ENSG00000115592.11	chr2:218826971:-	DNHD1^ENSG00000179532.13	chr11:6533897:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1329:50778:4825	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8323	"[""INTERCHROMOSOMAL[chr2--chr11]""]"	chr2:218826971-chr11:6533897	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PRICKLE1--RBMS1	1	0	0.5	0.0	ONLY_REF_SPLICE	PRICKLE1^ENSG00000139174.12	chr12:42589465:-	RBMS1^ENSG00000153250.20	chr2:160367391:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1152:22074:1799	.	YES_LDAS	0.0017	GT	1.7465	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:42589465-chr2:160367391	False			0	Read count too low: 1 < 8	FAIL	1
PRH1--SCAPER	1	0	1.0	0.0	ONLY_REF_SPLICE	PRH1^ENSG00000231887.7	chr12:10973655:-	SCAPER^ENSG00000140386.13	chr15:76804633:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1281:46506:23406	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8062	"[""INTERCHROMOSOMAL[chr12--chr15]""]"	chr12:10973655-chr15:76804633	False			0	Read count too low: 1 < 8	FAIL	1
PPP2R5D--CHAT	1	0	0.33	0.0	INCL_NON_REF_SPLICE	PPP2R5D^ENSG00000112640.16	chr6:42989688:+	CHAT^ENSG00000070748.19	chr10:49666230:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1134:17690:7320	.	YES_LDAS	0.0011	GT	1.7056	AG	1.1033	"[""INTERCHROMOSOMAL[chr6--chr10]""]"	chr6:42989688-chr10:49666230	False			0	Read count too low: 1 < 8	FAIL	1
PPP2CB--C5orf46	1	0	1.0	0.0	ONLY_REF_SPLICE	PPP2CB^ENSG00000104695.13	chr8:30774833:-	C5orf46^ENSG00000178776.5	chr5:147901773:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1183:42947:18389	.	YES_LDAS	0.0034	GT	1.9329	AG	1.3996	"[""INTERCHROMOSOMAL[chr8--chr5]""]"	chr8:30774833-chr5:147901773	False			0	Read count too low: 1 < 8	FAIL	1
PPP1R9A--BOD1L1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PPP1R9A^ENSG00000158528.12	chr7:95295009:+	BOD1L1^ENSG00000038219.13	chr4:13614702:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1361:8346:28548	.	NO_LDAS	0.0034	GT	1.9656	AG	1.6402	"[""INTERCHROMOSOMAL[chr7--chr4]""]"	chr7:95295009-chr4:13614702	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PPP1R37--ZMYND8	1	0	1.0	0.0	ONLY_REF_SPLICE	PPP1R37^ENSG00000104866.11	chr19:45093527:+	ZMYND8^ENSG00000101040.19	chr20:47310204:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2106:34056:2065	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9329	"[""INTERCHROMOSOMAL[chr19--chr20]""]"	chr19:45093527-chr20:47310204	False			0	Read count too low: 1 < 8	FAIL	1
PPP1R37--PDE2A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PPP1R37^ENSG00000104866.11	chr19:45100123:+	PDE2A^ENSG00000186642.16	chr11:72585382:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:40851:26474	.	NO_LDAS	0.0034	GT	1.8256	AG	1.9086	"[""INTERCHROMOSOMAL[chr19--chr11]""]"	chr19:45100123-chr11:72585382	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PPP1R12C--ZNF518A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PPP1R12C^ENSG00000125503.13	chr19:55093056:-	ZNF518A^ENSG00000177853.14	chr10:96157488:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:7302:9169	.	NO_LDAS	0.0034	GT	1.6402	AG	1.7465	"[""INTERCHROMOSOMAL[chr19--chr10]""]"	chr19:55093056-chr10:96157488	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PPP1R12A--ANKS1B	1	0	1.0	0.0	ONLY_REF_SPLICE	PPP1R12A^ENSG00000058272.19	chr12:79828320:-	ANKS1B^ENSG00000185046.18	chr12:99825389:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1245:21913:6759	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8323	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr12:18.79Mb]""]"	chr12:79828320-chr12:99825389	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
PPP1CB--MDH2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PPP1CB^ENSG00000213639.10	chr2:28752115:+	MDH2^ENSG00000146701.12	chr7:76048208:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2110:48569:21094	.	NO_LDAS	0.0034	GC	1.7465	AG	1.8295	"[""INTERCHROMOSOMAL[chr2--chr7]""]"	chr2:28752115-chr7:76048208	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PPME1--TCTN1	1	0	1.0	0.0	ONLY_REF_SPLICE	PPME1^ENSG00000214517.10	chr11:74204445:+	TCTN1^ENSG00000204852.17	chr12:110616277:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1433:30715:22425	.	YES_LDAS	0.0034	GT	1.7819	AG	1.9086	"[""INTERCHROMOSOMAL[chr11--chr12]""]"	chr11:74204445-chr12:110616277	False			0	Read count too low: 1 < 8	FAIL	1
PPM1L--PPP2R3A	1	0	1.0	0.0	ONLY_REF_SPLICE	PPM1L^ENSG00000163590.14	chr3:160961910:+	PPP2R3A^ENSG00000073711.11	chr3:136026832:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2165:30092:22495	.	YES_LDAS	0.0034	GT	1.9656	AG	1.371	"[""INTRACHROMOSOMAL[chr3:24.61Mb]""]"	chr3:160961910-chr3:136026832	False			0	Read count too low: 1 < 8	FAIL	1
PPIAP56--BAP1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PPIAP56^ENSG00000267663.1	chr18:12246996:+	BAP1^ENSG00000163930.10	chr3:52403201:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:26006:12728	.	NO_LDAS	0.0017	GC	1.7465	AG	1.4295	"[""INTERCHROMOSOMAL[chr18--chr3]""]"	chr18:12246996-chr3:52403201	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PPIAL4D--BAP1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PPIAL4D^ENSG00000256374.2	chr1:145241697:-	BAP1^ENSG00000163930.10	chr3:52403201:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:26006:12728	.	NO_LDAS	0.0017	GC	1.8892	AG	1.4295	"[""INTERCHROMOSOMAL[chr1--chr3]""]"	chr1:145241697-chr3:52403201	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PPFIA4--TTC7A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PPFIA4^ENSG00000143847.15	chr1:203075980:+	TTC7A^ENSG00000068724.17	chr2:47049957:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1220:39719:21066	.	NO_LDAS	0.0034	GT	1.5546	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:203075980-chr2:47049957	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
POU6F1--TCTN2	1	0	1.0	0.0	ONLY_REF_SPLICE	POU6F1^ENSG00000184271.17	chr12:51204173:-	TCTN2^ENSG00000168778.13	chr12:123679189:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1227:16986:14732	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9656	"[""INTRACHROMOSOMAL[chr12:72.45Mb]""]"	chr12:51204173-chr12:123679189	False			0	Read count too low: 1 < 8	FAIL	1
POU2F2--TMC2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	POU2F2^ENSG00000028277.21	chr19:42089238:-	TMC2^ENSG00000149488.14	chr20:2641426:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1485:7221:17324	.	NO_LDAS	0.0034	GT	0.971	AG	1.2867	"[""INTERCHROMOSOMAL[chr19--chr20]""]"	chr19:42089238-chr20:2641426	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
POU2F1--DAB1	1	0	0.5	0.0	ONLY_REF_SPLICE	POU2F1^ENSG00000143190.23	chr1:167338258:+	DAB1^ENSG00000173406.16	chr1:58506209:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2360:30626:10332	.	NO_LDAS	0.0017	GT	1.7819	AG	1.9899	"[""INTRACHROMOSOMAL[chr1:108.67Mb]""]"	chr1:167338258-chr1:58506209	False			0	Read count too low: 1 < 8	FAIL	1
POT1--IFT80	1	0	1.0	0.0	ONLY_REF_SPLICE	POT1^ENSG00000128513.16	chr7:124928815:-	IFT80^ENSG00000068885.15	chr3:160319939:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1449:23579:19594	.	YES_LDAS	0.0034	GT	1.6402	AG	1.8892	"[""INTERCHROMOSOMAL[chr7--chr3]""]"	chr7:124928815-chr3:160319939	False			0	Read count too low: 1 < 8	FAIL	1
POLR2J--AL355870.2	1	0	0.25	0.0	INCL_NON_REF_SPLICE	POLR2J^ENSG00000005075.15	chr7:102474361:-	AL355870.2^ENSG00000286514.1	chr10:13391370:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2202:49953:28002	.	NO_LDAS	0.0009	GT	1.8295	AG	1.7819	"[""INTERCHROMOSOMAL[chr7--chr10]""]"	chr7:102474361-chr10:13391370	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
POLR2J--AC004980.3	1	0	0.5	0.0	INCL_NON_REF_SPLICE	POLR2J^ENSG00000005075.15	chr7:102474393:-	AC004980.3^ENSG00000230305.2	chr7:76527766:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1151:6744:22159	.	YES_LDAS	0.0017	GT	1.7465	AG	1.7465	"[""INTRACHROMOSOMAL[chr7:25.94Mb]""]"	chr7:102474393-chr7:76527766	False			0	Read count too low: 1 < 8	FAIL	1
POLR2J--AC004951.2	1	0	0.33	0.0	ONLY_REF_SPLICE	POLR2J^ENSG00000005075.15	chr7:102474361:-	AC004951.2^ENSG00000239556.4	chr7:43988247:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2143:41458:14214	.	YES_LDAS	0.0011	GT	1.8295	AG	1.7465	"[""INTRACHROMOSOMAL[chr7:58.48Mb]""]"	chr7:102474361-chr7:43988247	False			0	Read count too low: 1 < 8	FAIL	1
PNPLA7--EMSY	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PNPLA7^ENSG00000130653.16	chr9:137547309:-	EMSY^ENSG00000158636.16	chr11:76544578:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1423:13928:21290	.	NO_LDAS	0.0034	GT	1.9656	AG	1.4295	"[""INTERCHROMOSOMAL[chr9--chr11]""]"	chr9:137547309-chr11:76544578	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PNMA8B--BARHL1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PNMA8B^ENSG00000204851.7	chr19:46493961:-	BARHL1^ENSG00000125492.10	chr9:132589920:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1250:15133:28674	.	NO_LDAS	0.0017	GT	1.6729	AG	1.1033	"[""INTERCHROMOSOMAL[chr19--chr9]""]"	chr19:46493961-chr9:132589920	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PMM1--ANKZF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PMM1^ENSG00000100417.12	chr22:41584044:-	ANKZF1^ENSG00000163516.14	chr2:219232619:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2125:31119:29375	.	NO_LDAS	0.0034	GT	1.9899	AG	1.8295	"[""INTERCHROMOSOMAL[chr22--chr2]""]"	chr22:41584044-chr2:219232619	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PLXNB3--CNNM2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PLXNB3^ENSG00000198753.12	chrX:153778661:+	CNNM2^ENSG00000148842.18	chr10:103078688:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2257:5150:8160	.	NO_LDAS	0.0034	GT	1.5628	AG	1.9656	"[""INTERCHROMOSOMAL[chrX--chr10]""]"	chrX:153778661-chr10:103078688	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PLXDC2--NEBL	1	0	1.0	0.0	ONLY_REF_SPLICE	PLXDC2^ENSG00000120594.17	chr10:20068239:+	NEBL^ENSG00000078114.19	chr10:20869841:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2149:48189:1743	.	YES_LDAS	0.0034	GT	1.7968	AG	1.7056	"[""INTRACHROMOSOMAL[chr10:0.49Mb]""]"	chr10:20068239-chr10:20869841	False			0	Read count too low: 1 < 8	FAIL	1
PLPP3--PCNX2	1	0	1.0	0.0	ONLY_REF_SPLICE	PLPP3^ENSG00000162407.9	chr1:56578878:-	PCNX2^ENSG00000135749.19	chr1:233236980:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1292:30998:15517	.	YES_LDAS	0.0034	GT	1.7819	AG	1.8323	"[""INTRACHROMOSOMAL[chr1:176.34Mb]""]"	chr1:56578878-chr1:233236980	False			0	Read count too low: 1 < 8	FAIL	1
PLPP2--NAB1	1	0	1.0	0.0	ONLY_REF_SPLICE	PLPP2^ENSG00000141934.10	chr19:291285:-	NAB1^ENSG00000138386.17	chr2:190649846:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2340:33886:3901	.	NO_LDAS	0.0034	GT	1.7819	AG	1.8062	"[""INTERCHROMOSOMAL[chr19--chr2]""]"	chr19:291285-chr2:190649846	False			0	Read count too low: 1 < 8	FAIL	1
PLP2--ARPP21	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PLP2^ENSG00000102007.11	chrX:49173441:+	ARPP21^ENSG00000172995.16	chr3:35641020:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2222:48844:23448	.	NO_LDAS	0.0034	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chrX--chr3]""]"	chrX:49173441-chr3:35641020	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PLEKHO1--RUNX1T1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PLEKHO1^ENSG00000023902.14	chr1:150150036:+	RUNX1T1^ENSG00000079102.16	chr8:92103176:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2262:9705:2709	.	NO_LDAS	0.0034	GT	1.053	AG	1.053	"[""INTERCHROMOSOMAL[chr1--chr8]""]"	chr1:150150036-chr8:92103176	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PLEKHO1--AL356512.1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	PLEKHO1^ENSG00000023902.14	chr1:150150040:+	AL356512.1^ENSG00000272195.1	chr1:244970724:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2145:32478:2191	.	NO_LDAS	0.0011	GT	1.3753	AG	1.053	"[""INTRACHROMOSOMAL[chr1:94.80Mb]""]"	chr1:150150040-chr1:244970724	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
PLEKHD1--RAPGEF3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PLEKHD1^ENSG00000175985.10	chr14:69528476:+	RAPGEF3^ENSG00000079337.16	chr12:47737181:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1113:23142:16231	.	NO_LDAS	0.0034	GT	0.7219	AG	1.5628	"[""INTERCHROMOSOMAL[chr14--chr12]""]"	chr14:69528476-chr12:47737181	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PLCD1--TRANK1	1	0	1.0	0.0	ONLY_REF_SPLICE	PLCD1^ENSG00000187091.14	chr3:38024337:-	TRANK1^ENSG00000168016.15	chr3:36908454:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1130:46846:27665	.	YES_LDAS	0.0034	GT	1.7232	AG	1.9329	"[""INTRACHROMOSOMAL[chr3:1.06Mb]""]"	chr3:38024337-chr3:36908454	False			0	Read count too low: 1 < 8	FAIL	1
PKP4--CCDC148	1	0	1.0	0.0	ONLY_REF_SPLICE	PKP4^ENSG00000144283.22	chr2:158533316:+	CCDC148^ENSG00000153237.18	chr2:158250912:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2110:2489:4643	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""DEEPEST2019"",""ChimerSeq"",""INTRACHROMOSOMAL[chr2:0.00Mb]"",""LOCAL_INVERSION:+:-:[199]""]"	chr2:158533316-chr2:158250912	False			0	Read count too low: 1 < 8	FAIL	1
PKP4--AP002856.4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PKP4^ENSG00000144283.22	chr2:158680718:+	AP002856.4^ENSG00000237612.1	chr11:131251399:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1402:43351:12308	.	NO_LDAS	0.0034	GT	1.3383	AG	1.7819	"[""INTERCHROMOSOMAL[chr2--chr11]""]"	chr2:158680718-chr11:131251399	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PKNOX2--MEIS3	1	0	1.0	0.0	ONLY_REF_SPLICE	PKNOX2^ENSG00000165495.16	chr11:125385722:+	MEIS3^ENSG00000105419.18	chr19:47417350:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2102:34072:23980	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr11--chr19]""]"	chr11:125385722-chr19:47417350	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
PITPNA--TACC1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PITPNA^ENSG00000174238.15	chr17:1535441:-	TACC1^ENSG00000147526.20	chr8:38843397:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1213:45762:10963	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7819	"[""INTERCHROMOSOMAL[chr17--chr8]""]"	chr17:1535441-chr8:38843397	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PIP5K1C--RRAS	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PIP5K1C^ENSG00000186111.11	chr19:3661871:-	RRAS^ENSG00000126458.4	chr19:49640123:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2105:37866:13821	.	NO_LDAS	0.0034	GT	1.6895	AG	1.5656	"[""INTRACHROMOSOMAL[chr19:45.93Mb]""]"	chr19:3661871-chr19:49640123	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PIP5K1A--RAI14	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PIP5K1A^ENSG00000143398.20	chr1:151199081:+	RAI14^ENSG00000039560.14	chr5:34667259:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1253:3662:19762	.	YES_LDAS	0.0034	GT	1.9086	AG	1.9656	"[""INTERCHROMOSOMAL[chr1--chr5]""]"	chr1:151199081-chr5:34667259	False			0	Read count too low: 1 < 8	FAIL	1
PIP4K2B--EZH1	1	0	1.0	0.0	ONLY_REF_SPLICE	PIP4K2B^ENSG00000276293.5	chr17:38777687:-	EZH1^ENSG00000108799.13	chr17:42709937:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1431:20675:25802	.	YES_LDAS	0.0034	GT	1.7968	AG	1.8295	"[""INTRACHROMOSOMAL[chr17:3.90Mb]""]"	chr17:38777687-chr17:42709937	False			0	Read count too low: 1 < 8	FAIL	1
PINX1--RP1L1	1	0	1.0	0.0	ONLY_REF_SPLICE	PINX1^ENSG00000254093.9	chr8:10820193:-	RP1L1^ENSG00000183638.6	chr8:10623220:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1298:18936:25536	.	YES_LDAS	0.0034	GT	1.8062	AG	1.4566	"[""INTRACHROMOSOMAL[chr8:0.05Mb]"",""NEIGHBORS[52774]""]"	chr8:10820193-chr8:10623220	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
PINK1--TNRC6B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PINK1^ENSG00000158828.8	chr1:20633606:+	TNRC6B^ENSG00000100354.21	chr22:40262152:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1280:1364:3816	.	NO_LDAS	0.0034	GC	1.7819	AG	1.7465	"[""INTERCHROMOSOMAL[chr1--chr22]""]"	chr1:20633606-chr22:40262152	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PIKFYVE--PCYT1A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PIKFYVE^ENSG00000115020.17	chr2:208340062:+	PCYT1A^ENSG00000161217.12	chr3:196239666:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1343:5094:29221	.	NO_LDAS	0.0034	GT	1.6402	AG	1.7056	"[""INTERCHROMOSOMAL[chr2--chr3]""]"	chr2:208340062-chr3:196239666	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PIAS2--ZFPM2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PIAS2^ENSG00000078043.16	chr18:46917356:-	ZFPM2^ENSG00000169946.14	chr8:104703779:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:10223:27932	.	NO_LDAS	0.0017	GT	0.9968	AG	1.6402	"[""INTERCHROMOSOMAL[chr18--chr8]""]"	chr18:46917356-chr8:104703779	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PIAS2--TRIM24	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PIAS2^ENSG00000078043.16	chr18:46917356:-	TRIM24^ENSG00000122779.18	chr7:138589618:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:10223:27932	.	NO_LDAS	0.0017	GT	0.9968	AG	1.8892	"[""INTERCHROMOSOMAL[chr18--chr7]""]"	chr18:46917356-chr7:138589618	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PI4KA--PDCD11	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PI4KA^ENSG00000241973.11	chr22:20729632:-	PDCD11^ENSG00000148843.15	chr10:103442399:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2426:35844:17913	.	NO_LDAS	0.0034	GT	1.5656	AG	1.8062	"[""INTERCHROMOSOMAL[chr22--chr10]""]"	chr22:20729632-chr10:103442399	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PHLDB3--CNTNAP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PHLDB3^ENSG00000176531.10	chr19:43497118:-	CNTNAP1^ENSG00000108797.12	chr17:42684104:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1208:31669:1378	.	NO_LDAS	0.0034	GT	1.8256	AG	1.6895	"[""INTERCHROMOSOMAL[chr19--chr17]""]"	chr19:43497118-chr17:42684104	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PHF2P2--ZMYM2	1	0	1.0	0.0	ONLY_REF_SPLICE	PHF2P2^ENSG00000226057.7	chr13:18951670:-	ZMYM2^ENSG00000121741.17	chr13:19959958:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2330:25060:17675	.	YES_LDAS	0.0034	GT	1.7056	AG	1.9086	"[""INTRACHROMOSOMAL[chr13:0.90Mb]""]"	chr13:18951670-chr13:19959958	False			0	Read count too low: 1 < 8	FAIL	1
PHBP11--KLK5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PHBP11^ENSG00000227621.1	chr1:223856813:-	KLK5^ENSG00000167754.13	chr19:50952913:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1219:34662:26544	.	NO_LDAS	0.0034	GT	1.8892	AG	1.6402	"[""INTERCHROMOSOMAL[chr1--chr19]""]"	chr1:223856813-chr19:50952913	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PGS1--SLC38A10	1	0	1.0	0.0	ONLY_REF_SPLICE	PGS1^ENSG00000087157.19	chr17:78378808:+	SLC38A10^ENSG00000157637.13	chr17:81253240:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1134:14486:21892	.	YES_LDAS	0.0034	GT	1.5219	AG	1.9086	"[""INTRACHROMOSOMAL[chr17:2.82Mb]""]"	chr17:78378808-chr17:81253240	False			0	Read count too low: 1 < 8	FAIL	1
PFKP--IRAG1-AS1	1	0	1.0	0.0	ONLY_REF_SPLICE	PFKP^ENSG00000067057.18	chr10:3082461:+	IRAG1-AS1^ENSG00000177112.8	chr11:10594117:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1223:34768:21598	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9329	"[""INTERCHROMOSOMAL[chr10--chr11]""]"	chr10:3082461-chr11:10594117	False			0	Read count too low: 1 < 8	FAIL	1
PFKL--PFKM	1	0	1.0	0.0	ONLY_REF_SPLICE	PFKL^ENSG00000141959.17	chr21:44313143:+	PFKM^ENSG00000152556.17	chr12:48134232:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1119:12949:20883	.	NO_LDAS	0.0034	GT	1.7465	AG	1.9086	"[""INTERCHROMOSOMAL[chr21--chr12]""]"	chr21:44313143-chr12:48134232	False			0	Read count too low: 1 < 8	FAIL	1
PELI2--SIPA1L1	1	0	1.0	0.0	ONLY_REF_SPLICE	PELI2^ENSG00000139946.10	chr14:56178464:+	SIPA1L1^ENSG00000197555.9	chr14:71587571:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1461:26030:7053	.	YES_LDAS	0.0034	GT	1.7465	AG	1.7819	"[""INTRACHROMOSOMAL[chr14:15.02Mb]""]"	chr14:56178464-chr14:71587571	False			0	Read count too low: 1 < 8	FAIL	1
PELI1--MGAT4A	1	0	1.0	0.0	ONLY_REF_SPLICE	PELI1^ENSG00000197329.12	chr2:64144081:-	MGAT4A^ENSG00000071073.13	chr2:98678471:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2205:34315:24765	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8323	"[""INTRACHROMOSOMAL[chr2:34.47Mb]""]"	chr2:64144081-chr2:98678471	False			0	Read count too low: 1 < 8	FAIL	1
PEA15--NECTIN2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PEA15^ENSG00000162734.13	chr1:160213510:+	NECTIN2^ENSG00000130202.10	chr19:44871871:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1138:27746:17198	.	NO_LDAS	0.0034	GT	0.9968	AG	1.8062	"[""INTERCHROMOSOMAL[chr1--chr19]""]"	chr1:160213510-chr19:44871871	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PDLIM7--PRSS27	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PDLIM7^ENSG00000196923.14	chr5:177491911:-	PRSS27^ENSG00000172382.10	chr16:2715685:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1209:9681:17268	.	NO_LDAS	0.0034	GC	1.053	AG	1.6402	"[""INTERCHROMOSOMAL[chr5--chr16]""]"	chr5:177491911-chr16:2715685	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PDLIM2--KNOP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PDLIM2^ENSG00000120913.23	chr8:22589741:+	KNOP1^ENSG00000103550.14	chr16:19710478:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1494:22188:9365	.	NO_LDAS	0.0034	GT	1.5329	AG	1.7056	"[""INTERCHROMOSOMAL[chr8--chr16]""]"	chr8:22589741-chr16:19710478	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PDE4D--MMP24OS	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PDE4D^ENSG00000113448.19	chr5:59893414:-	MMP24OS^ENSG00000126005.17	chr20:35277800:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2326:39824:22873	.	NO_LDAS	0.0034	GT	1.2419	AG	1.1033	"[""INTERCHROMOSOMAL[chr5--chr20]""]"	chr5:59893414-chr20:35277800	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PDCD6IPP2--SENP3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PDCD6IPP2^ENSG00000261377.5	chr15:28857965:+	SENP3^ENSG00000161956.13	chr17:7564841:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1325:10392:3340	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9656	"[""INTERCHROMOSOMAL[chr15--chr17]""]"	chr15:28857965-chr17:7564841	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PDAP1--FOXN3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PDAP1^ENSG00000106244.13	chr7:99404862:-	FOXN3^ENSG00000053254.16	chr14:89125106:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1305:42138:4321	.	NO_LDAS	0.0034	GT	1.5219	AG	1.2729	"[""INTERCHROMOSOMAL[chr7--chr14]""]"	chr7:99404862-chr14:89125106	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PCMTD1--PXDNL	1	0	1.0	0.0	ONLY_REF_SPLICE	PCMTD1^ENSG00000168300.14	chr8:51831444:-	PXDNL^ENSG00000147485.13	chr8:51654760:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2470:32211:24849	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8256	"[""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr8:0.01Mb]"",""NEIGHBORS[8130]""]"	chr8:51831444-chr8:51654760	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
PCDHGB1--PCDHGA10	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PCDHGB1^ENSG00000254221.2	chr5:141352669:+	PCDHGA10^ENSG00000253846.2	chr5:141494807:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:28635:24765	.	YES_LDAS	0.0034	GT	1.6895	AG	1.3383	"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr5:0.06Mb]"",""NEIGHBORS[60294]""]"	chr5:141352669-chr5:141494807	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
PCDH7--DPH6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PCDH7^ENSG00000169851.15	chr4:30920375:+	DPH6^ENSG00000134146.12	chr15:35454813:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1442:49815:9323	.	YES_LDAS	0.0034	GC	1.5058	AG	1.2867	"[""INTERCHROMOSOMAL[chr4--chr15]""]"	chr4:30920375-chr15:35454813	False			0	Read count too low: 1 < 8	FAIL	1
PATL1--CYP2R1	1	0	1.0	0.0	ONLY_REF_SPLICE	PATL1^ENSG00000166889.14	chr11:59666853:-	CYP2R1^ENSG00000186104.11	chr11:14885917:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1395:45058:29081	.	YES_LDAS	0.0034	GT	1.7968	AG	1.7968	"[""INTRACHROMOSOMAL[chr11:44.74Mb]""]"	chr11:59666853-chr11:14885917	False			0	Read count too low: 1 < 8	FAIL	1
PARN--HNRNPC	1	0	1.0	0.0	ONLY_REF_SPLICE	PARN^ENSG00000140694.17	chr16:14555654:-	HNRNPC^ENSG00000092199.18	chr14:21234229:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1138:17277:28997	.	YES_LDAS	0.0034	GT	1.9086	AG	1.6402	"[""INTERCHROMOSOMAL[chr16--chr14]""]"	chr16:14555654-chr14:21234229	False			0	Read count too low: 1 < 8	FAIL	1
PARK7--TENM2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PARK7^ENSG00000116288.13	chr1:7969404:+	TENM2^ENSG00000145934.16	chr5:168126802:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2162:40827:19062	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9086	"[""INTERCHROMOSOMAL[chr1--chr5]""]"	chr1:7969404-chr5:168126802	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PARD3B--FCHO2	1	0	1.0	0.0	ONLY_REF_SPLICE	PARD3B^ENSG00000116117.18	chr2:205301701:+	FCHO2^ENSG00000157107.14	chr5:73006445:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2316:10676:13303	.	NO_LDAS	0.0034	GT	1.8323	AG	1.9656	"[""INTERCHROMOSOMAL[chr2--chr5]""]"	chr2:205301701-chr5:73006445	False			0	Read count too low: 1 < 8	FAIL	1
PARD3B--ARHGEF3	1	0	1.0	0.0	ONLY_REF_SPLICE	PARD3B^ENSG00000116117.18	chr2:204546119:+	ARHGEF3^ENSG00000163947.12	chr3:56773816:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1138:11493:25255	.	YES_LDAS	0.0034	GT	1.5219	AG	1.8295	"[""INTERCHROMOSOMAL[chr2--chr3]""]"	chr2:204546119-chr3:56773816	False			0	Read count too low: 1 < 8	FAIL	1
PALB2--CENPN	1	0	1.0	0.0	ONLY_REF_SPLICE	PALB2^ENSG00000083093.10	chr16:23629204:-	CENPN^ENSG00000166451.14	chr16:81014136:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1384:10223:23840	.	YES_LDAS	0.0034	GT	1.8256	AG	1.8323	"[""INTRACHROMOSOMAL[chr16:57.37Mb]""]"	chr16:23629204-chr16:81014136	False			0	Read count too low: 1 < 8	FAIL	1
PAK3--TUBGCP4	1	0	0.5	0.0	INCL_NON_REF_SPLICE	PAK3^ENSG00000077264.16	chrX:111103183:+	TUBGCP4^ENSG00000137822.13	chr15:43404398:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:38368:7684	.	NO_LDAS	0.0017	GT	1.6895	AG	1.7056	"[""INTERCHROMOSOMAL[chrX--chr15]""]"	chrX:111103183-chr15:43404398	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
PACERR--BSX	1	0	1.0	0.0	INCL_NON_REF_SPLICE	PACERR^ENSG00000273129.2	chr1:186680890:+	BSX^ENSG00000188909.5	chr11:122977771:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1229:17811:2906	.	NO_LDAS	0.0034	GT	0.8366	AG	1.1589	"[""INTERCHROMOSOMAL[chr1--chr11]""]"	chr1:186680890-chr11:122977771	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
P2RY2--LRRC8E	1	0	1.0	0.0	INCL_NON_REF_SPLICE	P2RY2^ENSG00000175591.12	chr11:73235005:+	LRRC8E^ENSG00000171017.11	chr19:7899546:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1338:48205:15671	.	NO_LDAS	0.0034	GC	1.6402	AG	1.5628	"[""INTERCHROMOSOMAL[chr11--chr19]""]"	chr11:73235005-chr19:7899546	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
OXSR1--P2RY14	1	0	1.0	0.0	ONLY_REF_SPLICE	OXSR1^ENSG00000172939.9	chr3:38165946:+	P2RY14^ENSG00000174944.9	chr3:151219642:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2294:7868:8665	.	YES_LDAS	0.0034	GT	1.8295	AG	1.6895	"[""INTRACHROMOSOMAL[chr3:112.96Mb]""]"	chr3:38165946-chr3:151219642	False			0	Read count too low: 1 < 8	FAIL	1
OSGEPL1--ORMDL1	1	0	1.0	0.0	ONLY_REF_SPLICE	OSGEPL1^ENSG00000128694.12	chr2:189752849:-	ORMDL1^ENSG00000128699.14	chr2:189771902:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1333:12423:12910	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8892	"[""INTRACHROMOSOMAL[chr2:0.01Mb]"",""LOCAL_REARRANGEMENT:-:[7040]""]"	chr2:189752849-chr2:189771902	False			0	Read count too low: 1 < 8	FAIL	1
OS9--SLC25A25-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	OS9^ENSG00000135506.16	chr12:57715916:+	SLC25A25-AS1^ENSG00000234771.3	chr9:128108996:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1145:39686:7474	.	NO_LDAS	0.0034	GT	1.8295	AG	1.053	"[""INTERCHROMOSOMAL[chr12--chr9]""]"	chr12:57715916-chr9:128108996	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ORAI1--AC022509.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ORAI1^ENSG00000276045.3	chr12:121626887:+	AC022509.1^ENSG00000255750.6	chr12:26231678:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1432:47647:22691	.	NO_LDAS	0.0034	GT	1.053	AG	1.2419	"[""INTRACHROMOSOMAL[chr12:95.31Mb]""]"	chr12:121626887-chr12:26231678	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
OR4E1--MICU1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	OR4E1^ENSG00000276240.2	chr14:21669437:-	MICU1^ENSG00000107745.19	chr10:72475297:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2157:17237:17212	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr14--chr10]""]"	chr14:21669437-chr10:72475297	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
OPHN1--HIPK2	1	0	1.0	0.0	ONLY_REF_SPLICE	OPHN1^ENSG00000079482.14	chrX:68432867:-	HIPK2^ENSG00000064393.16	chr7:139717015:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1214:38392:23560	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9899	"[""INTERCHROMOSOMAL[chrX--chr7]""]"	chrX:68432867-chr7:139717015	False			0	Read count too low: 1 < 8	FAIL	1
OGT--RNU5B-1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	OGT^ENSG00000147162.14	chrX:71554592:+	RNU5B-1^ENSG00000200156.1	chr15:65304697:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1259:10813:24947	.	YES_LDAS	0.0034	GT	1.9656	AG	1.6895	"[""INTERCHROMOSOMAL[chrX--chr15]""]"	chrX:71554592-chr15:65304697	False			0	Read count too low: 1 < 8	FAIL	1
OGDH--TRAK2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	OGDH^ENSG00000105953.15	chr7:44676149:+	TRAK2^ENSG00000115993.13	chr2:201401088:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1144:33392:17703	.	NO_LDAS	0.0034	GT	1.5329	AG	1.7465	"[""INTERCHROMOSOMAL[chr7--chr2]""]"	chr7:44676149-chr2:201401088	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ODF3B--RPS28	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ODF3B^ENSG00000177989.13	chr22:50530012:-	RPS28^ENSG00000233927.5	chr19:8321511:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1311:49022:27960	.	NO_LDAS	0.0034	GT	1.231	AG	1.231	"[""INTERCHROMOSOMAL[chr22--chr19]""]"	chr22:50530012-chr19:8321511	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
OAZ1--FAM78A	1	0	1.0	0.0	ONLY_REF_SPLICE	OAZ1^ENSG00000104904.12	chr19:2269744:+	FAM78A^ENSG00000126882.13	chr9:131261350:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:7148:17815	.	YES_LDAS	0.0034	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chr19--chr9]""]"	chr19:2269744-chr9:131261350	False			0	Read count too low: 1 < 8	FAIL	1
OAS1--OAS3	1	0	1.0	0.0	ONLY_REF_SPLICE	OAS1^ENSG00000089127.15	chr12:112917700:+	OAS3^ENSG00000111331.14	chr12:112946743:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2225:42688:10767	.	NO_LDAS	0.0034	GT	1.8062	AG	1.8295	"[""INTRACHROMOSOMAL[chr12:0.00Mb]"",""NEIGHBORS[4832]""]"	chr12:112917700-chr12:112946743	False			0	Read count too low: 1 < 8	FAIL	1
NXPE3--CD47	1	0	1.0	0.0	ONLY_REF_SPLICE	NXPE3^ENSG00000144815.16	chr3:101807126:+	CD47^ENSG00000196776.17	chr3:108080344:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1387:10433:15236	.	NO_LDAS	0.0034	GT	1.6402	AG	1.9656	"[""INTRACHROMOSOMAL[chr3:6.21Mb]""]"	chr3:101807126-chr3:108080344	False			0	Read count too low: 1 < 8	FAIL	1
NXNL1--RC3H1	1	0	0.17	0.0	INCL_NON_REF_SPLICE	NXNL1^ENSG00000171773.3	chr19:17455654:-	RC3H1^ENSG00000135870.12	chr1:173982860:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1413:10627:20954	.	NO_LDAS	0.0006	GT	1.1589	AG	1.8892	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:17455654-chr1:173982860	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NXNL1--C2CD2	1	0	0.17	0.0	INCL_NON_REF_SPLICE	NXNL1^ENSG00000171773.3	chr19:17455654:-	C2CD2^ENSG00000157617.17	chr21:41942182:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1130:26556:29263	.	NO_LDAS	0.0006	GT	1.1589	AG	1.8892	"[""INTERCHROMOSOMAL[chr19--chr21]""]"	chr19:17455654-chr21:41942182	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NUTF2--DGLUCY	1	0	1.0	0.0	ONLY_REF_SPLICE	NUTF2^ENSG00000102898.12	chr16:67846985:+	DGLUCY^ENSG00000133943.21	chr14:91157639:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1237:11533:22999	.	YES_LDAS	0.0034	GT	1.6895	AG	1.9086	"[""INTERCHROMOSOMAL[chr16--chr14]""]"	chr16:67846985-chr14:91157639	False			0	Read count too low: 1 < 8	FAIL	1
NUP50--WASHC2A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NUP50^ENSG00000093000.19	chr22:45184664:+	WASHC2A^ENSG00000099290.17	chr10:50097681:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1474:27454:3186	.	NO_LDAS	0.0034	GT	1.7819	AG	1.8295	"[""INTERCHROMOSOMAL[chr22--chr10]""]"	chr22:45184664-chr10:50097681	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NUF2--MFHAS1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	NUF2^ENSG00000143228.13	chr1:163321923:+	MFHAS1^ENSG00000147324.11	chr8:8893550:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:10336:28352	.	NO_LDAS	0.0017	GT	1.7819	AG	1.2729	"[""INTERCHROMOSOMAL[chr1--chr8]""]"	chr1:163321923-chr8:8893550	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NUDT3--NUDT4	1	0	1.0	0.0	ONLY_REF_SPLICE	NUDT3^ENSG00000272325.2	chr6:34293451:-	NUDT4^ENSG00000173598.14	chr12:93399177:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2465:40180:6871	.	NO_LDAS	0.0034	GT	1.8323	AG	1.2867	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr6--chr12]""]"	chr6:34293451-chr12:93399177	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
NUDT14--SALL3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NUDT14^ENSG00000183828.15	chr14:105181224:-	SALL3^ENSG00000256463.8	chr18:78993747:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2302:43861:23532	.	NO_LDAS	0.0034	GT	1.3383	AG	1.5219	"[""INTERCHROMOSOMAL[chr14--chr18]""]"	chr14:105181224-chr18:78993747	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NUCB2--CDC42P6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NUCB2^ENSG00000070081.17	chr11:17260890:+	CDC42P6^ENSG00000237350.1	chr4:22728000:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2155:40099:26208	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9086	"[""INTERCHROMOSOMAL[chr11--chr4]""]"	chr11:17260890-chr4:22728000	False			0	Read count too low: 1 < 8	FAIL	1
NUAK2--NUAK1	1	0	1.0	0.0	ONLY_REF_SPLICE	NUAK2^ENSG00000163545.11	chr1:205308165:-	NUAK1^ENSG00000074590.14	chr12:106072843:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1206:6307:29725	.	NO_LDAS	0.0034	GT	1.7465	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr12]""]"	chr1:205308165-chr12:106072843	False			0	Read count too low: 1 < 8	FAIL	1
NTN1--ABR	1	0	1.0	0.0	ONLY_REF_SPLICE	NTN1^ENSG00000065320.9	chr17:9182969:+	ABR^ENSG00000159842.15	chr17:1125367:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1181:25278:25900	.	NO_LDAS	0.0034	GT	1.7968	AG	1.9899	"[""INTRACHROMOSOMAL[chr17:7.79Mb]""]"	chr17:9182969-chr17:1125367	False			0	Read count too low: 1 < 8	FAIL	1
NT5C2--PLEKHM3	1	0	0.17	0.0	ONLY_REF_SPLICE	NT5C2^ENSG00000076685.19	chr10:103197765:-	PLEKHM3^ENSG00000178385.15	chr2:207908577:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1285:16654:7095	.	NO_LDAS	0.0006	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr10--chr2]""]"	chr10:103197765-chr2:207908577	False			0	Read count too low: 1 < 8	FAIL	1
NSD1--FAR1	1	0	1.0	0.0	ONLY_REF_SPLICE	NSD1^ENSG00000165671.21	chr5:177136030:+	FAR1^ENSG00000197601.13	chr11:13727556:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1222:6121:26600	.	NO_LDAS	0.0034	GT	1.9656	AG	1.7819	"[""INTERCHROMOSOMAL[chr5--chr11]""]"	chr5:177136030-chr11:13727556	False			0	Read count too low: 1 < 8	FAIL	1
NSD1--BMP2K	1	0	1.0	0.0	ONLY_REF_SPLICE	NSD1^ENSG00000165671.21	chr5:177192019:+	BMP2K^ENSG00000138756.19	chr4:78878734:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1335:21816:5414	.	YES_LDAS	0.0034	GT	1.5546	AG	1.9329	"[""INTERCHROMOSOMAL[chr5--chr4]""]"	chr5:177192019-chr4:78878734	False			0	Read count too low: 1 < 8	FAIL	1
NRIP3--AC008786.1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	NRIP3^ENSG00000175352.11	chr11:9003966:-	AC008786.1^ENSG00000286853.1	chr5:58145716:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1396:19138:15769	.	NO_LDAS	0.0017	GT	1.3383	AG	1.8256	"[""INTERCHROMOSOMAL[chr11--chr5]""]"	chr11:9003966-chr5:58145716	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NRDE2--CPLANE1	1	0	1.0	0.0	ONLY_REF_SPLICE	NRDE2^ENSG00000119720.18	chr14:90298260:-	CPLANE1^ENSG00000197603.16	chr5:37175986:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1103:36766:23013	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""INTERCHROMOSOMAL[chr14--chr5]""]"	chr14:90298260-chr5:37175986	False			0	Read count too low: 1 < 8	FAIL	1
NRDC--INO80C	1	0	1.0	0.0	ONLY_REF_SPLICE	NRDC^ENSG00000078618.22	chr1:51790533:-	INO80C^ENSG00000153391.16	chr18:35478349:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1231:43958:8511	.	YES_LDAS	0.0034	GT	1.7968	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr18]""]"	chr1:51790533-chr18:35478349	False			0	Read count too low: 1 < 8	FAIL	1
NRBP1--NRBP2	1	0	1.0	0.0	ONLY_REF_SPLICE	NRBP1^ENSG00000115216.14	chr2:27434762:+	NRBP2^ENSG00000185189.18	chr8:143839408:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1472:19567:17240	.	YES_LDAS	0.0034	GT	1.7968	AG	1.7465	"[""INTERCHROMOSOMAL[chr2--chr8]""]"	chr2:27434762-chr8:143839408	False			0	Read count too low: 1 < 8	FAIL	1
NR3C1--USP22	1	0	1.0	0.0	ONLY_REF_SPLICE	NR3C1^ENSG00000113580.15	chr5:143404376:-	USP22^ENSG00000124422.12	chr17:21028674:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1432:33069:9519	.	NO_LDAS	0.0034	GT	1.371	AG	1.9656	"[""INTERCHROMOSOMAL[chr5--chr17]""]"	chr5:143404376-chr17:21028674	False			0	Read count too low: 1 < 8	FAIL	1
NPNT--AL022323.3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NPNT^ENSG00000168743.13	chr4:105895623:+	AL022323.3^ENSG00000279110.1	chr22:25061816:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1273:25990:4881	.	NO_LDAS	0.0034	GC	1.6729	AG	1.3753	"[""INTERCHROMOSOMAL[chr4--chr22]""]"	chr4:105895623-chr22:25061816	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NPHP3--STRN3	1	0	1.0	0.0	ONLY_REF_SPLICE	NPHP3^ENSG00000113971.20	chr3:132721963:-	STRN3^ENSG00000196792.12	chr14:30956242:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2375:31621:9618	.	NO_LDAS	0.0034	GT	1.7819	AG	1.9329	"[""INTERCHROMOSOMAL[chr3--chr14]""]"	chr3:132721963-chr14:30956242	False			0	Read count too low: 1 < 8	FAIL	1
NORAD--TUT7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NORAD^ENSG00000260032.2	chr20:36048516:-	TUT7^ENSG00000083223.18	chr9:86323747:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1188:31378:4041	.	YES_LDAS	0.0034	GT	1.4295	AG	1.7232	"[""INTERCHROMOSOMAL[chr20--chr9]""]"	chr20:36048516-chr9:86323747	False			0	Read count too low: 1 < 8	FAIL	1
NME2--NME1	1	0	1.0	0.0	ONLY_REF_SPLICE	NME2^ENSG00000243678.12	chr17:51168343:+	NME1^ENSG00000239672.8	chr17:51161160:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1381:45770:17198	.	YES_LDAS	0.0034	GT	1.8062	AG	1.5546	"[""DGD_PARALOGS"",""INTRACHROMOSOMAL[chr17:0.00Mb]"",""LOCAL_REARRANGEMENT:+:[3007]""]"	chr17:51168343-chr17:51161160	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
NLK--PDLIM1	1	0	1.0	0.0	ONLY_REF_SPLICE	NLK^ENSG00000087095.13	chr17:28043331:+	PDLIM1^ENSG00000107438.9	chr10:95247366:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1483:13815:16694	.	NO_LDAS	0.0034	GT	1.3996	AG	1.9329	"[""INTERCHROMOSOMAL[chr17--chr10]""]"	chr17:28043331-chr10:95247366	False			0	Read count too low: 1 < 8	FAIL	1
NIPBL--BASP1	1	0	1.0	0.0	ONLY_REF_SPLICE	NIPBL^ENSG00000164190.19	chr5:36976402:+	BASP1^ENSG00000176788.9	chr5:17275208:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1278:32640:2247	.	NO_LDAS	0.0034	GT	1.6729	AG	1.8892	"[""DEEPEST2019"",""TumorFusionsNAR2018"",""INTRACHROMOSOMAL[chr5:19.60Mb]""]"	chr5:36976402-chr5:17275208	False			0	Read count too low: 1 < 8	FAIL	1
NIBAN2--NIBAN1	1	0	1.0	0.0	ONLY_REF_SPLICE	NIBAN2^ENSG00000136830.12	chr9:127517826:-	NIBAN1^ENSG00000135842.17	chr1:184823742:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1408:4916:18964	.	NO_LDAS	0.0034	GT	1.6402	AG	1.9899	"[""INTERCHROMOSOMAL[chr9--chr1]""]"	chr9:127517826-chr1:184823742	False			0	Read count too low: 1 < 8	FAIL	1
NFKB2--GPR153	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NFKB2^ENSG00000077150.20	chr10:102399462:+	GPR153^ENSG00000158292.7	chr1:6249640:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1112:51894:25732	.	NO_LDAS	0.0034	GT	1.5546	AG	1.7819	"[""INTERCHROMOSOMAL[chr10--chr1]""]"	chr10:102399462-chr1:6249640	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NEU1--DUS1L	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NEU1^ENSG00000204386.12	chr6:31861308:-	DUS1L^ENSG00000169718.18	chr17:82061983:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1284:30609:4251	.	NO_LDAS	0.0034	GT	1.7819	AG	1.9329	"[""INTERCHROMOSOMAL[chr6--chr17]""]"	chr6:31861308-chr17:82061983	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NEO1--COPS2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NEO1^ENSG00000067141.17	chr15:73178427:+	COPS2^ENSG00000166200.15	chr15:49119142:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1133:1485:22074	.	YES_LDAS	0.0034	GT	1.9086	AG	1.8295	"[""INTRACHROMOSOMAL[chr15:23.90Mb]""]"	chr15:73178427-chr15:49119142	False			0	Read count too low: 1 < 8	FAIL	1
NEK9--RUFY3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NEK9^ENSG00000119638.14	chr14:75091434:-	RUFY3^ENSG00000018189.13	chr4:70704817:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1298:16250:1238	.	NO_LDAS	0.0034	GT	1.053	AG	1.2419	"[""INTERCHROMOSOMAL[chr14--chr4]""]"	chr14:75091434-chr4:70704817	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NEK9--MROH1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NEK9^ENSG00000119638.14	chr14:75121119:-	MROH1^ENSG00000179832.17	chr8:144192988:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1155:41871:2513	.	NO_LDAS	0.0034	GT	1.5656	AG	1.3383	"[""INTERCHROMOSOMAL[chr14--chr8]""]"	chr14:75121119-chr8:144192988	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NEDD9--PPM1B-DT	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NEDD9^ENSG00000111859.17	chr6:11188239:-	PPM1B-DT^ENSG00000273106.1	chr2:44168703:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1435:27940:2794	.	NO_LDAS	0.0034	AT	1.5546	AC	1.053	"[""INTERCHROMOSOMAL[chr6--chr2]""]"	chr6:11188239-chr2:44168703	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NEDD8P1--MDP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NEDD8P1^ENSG00000226970.2	chr1:84244518:+	MDP1^ENSG00000213920.9	chr14:24215797:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2171:48286:3929	.	YES_LDAS	0.0034	GT	1.7056	AG	1.9086	"[""INTERCHROMOSOMAL[chr1--chr14]""]"	chr1:84244518-chr14:24215797	False			0	Read count too low: 1 < 8	FAIL	1
NECTIN4--KRT23	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NECTIN4^ENSG00000143217.9	chr1:161074213:-	KRT23^ENSG00000108244.17	chr17:40925484:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2214:49694:17016	.	NO_LDAS	0.0034	GT	1.8295	AG	1.7819	"[""INTERCHROMOSOMAL[chr1--chr17]""]"	chr1:161074213-chr17:40925484	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NECTIN3--CD96	1	0	1.0	0.0	ONLY_REF_SPLICE	NECTIN3^ENSG00000177707.11	chr3:111192413:+	CD96^ENSG00000153283.13	chr3:111364513:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1329:23830:21542	.	NO_LDAS	0.0034	GT	1.8256	AG	1.9086	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr3:0.02Mb]"",""NEIGHBORS[17156]""]"	chr3:111192413-chr3:111364513	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
NDUFS5--NDUFS5P2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NDUFS5^ENSG00000168653.11	chr1:39034556:+	NDUFS5P2^ENSG00000234226.5	chr1:96584461:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:31960:2471	.	NO_LDAS	0.0034	GT	1.9899	AG	1.371	"[""INTRACHROMOSOMAL[chr1:57.55Mb]""]"	chr1:39034556-chr1:96584461	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
NDUFS1--SMG8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NDUFS1^ENSG00000023228.14	chr2:206117069:-	SMG8^ENSG00000167447.13	chr17:59212341:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1298:1550:19244	.	NO_LDAS	0.0034	GT	1.9329	AG	1.3996	"[""INTERCHROMOSOMAL[chr2--chr17]""]"	chr2:206117069-chr17:59212341	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NDUFB4P11--AC087564.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NDUFB4P11^ENSG00000259374.2	chr14:103140655:+	AC087564.1^ENSG00000285367.1	chr16:51441063:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2203:5830:13737	.	YES_LDAS	0.0034	GT	0.9968	AG	0.9968	"[""INTERCHROMOSOMAL[chr14--chr16]""]"	chr14:103140655-chr16:51441063	False			0	Read count too low: 1 < 8	FAIL	1
NDUFB2--KCNK9	1	0	0.5	0.0	INCL_NON_REF_SPLICE	NDUFB2^ENSG00000090266.13	chr7:140697221:+	KCNK9^ENSG00000169427.8	chr8:139703108:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1393:37356:4755	.	NO_LDAS	0.0017	GT	0.8366	AG	0.9183	"[""INTERCHROMOSOMAL[chr7--chr8]""]"	chr7:140697221-chr8:139703108	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NDUFB2--ITIH5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NDUFB2^ENSG00000090266.13	chr7:140697221:+	ITIH5^ENSG00000123243.15	chr10:7562828:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2167:31305:12042	.	NO_LDAS	0.0034	GT	0.8366	AG	1.231	"[""INTERCHROMOSOMAL[chr7--chr10]""]"	chr7:140697221-chr10:7562828	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NDUFAF6--LGALS3	1	0	0.5	0.0	ONLY_REF_SPLICE	NDUFAF6^ENSG00000156170.13	chr8:95044595:+	LGALS3^ENSG00000131981.16	chr14:55137370:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:40981:2766	.	NO_LDAS	0.0017	GT	1.9329	AG	1.6402	"[""INTERCHROMOSOMAL[chr8--chr14]""]"	chr8:95044595-chr14:55137370	False			0	Read count too low: 1 < 8	FAIL	1
NDST1--IL17RD	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NDST1^ENSG00000070614.15	chr5:150521192:+	IL17RD^ENSG00000144730.19	chr3:57097806:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1146:45730:24555	.	YES_LDAS	0.0034	GT	1.5219	AG	1.4566	"[""INTERCHROMOSOMAL[chr5--chr3]""]"	chr5:150521192-chr3:57097806	False			0	Read count too low: 1 < 8	FAIL	1
NDRG4--LEF1	1	0	0.25	0.0	INCL_NON_REF_SPLICE	NDRG4^ENSG00000103034.14	chr16:58464269:+	LEF1^ENSG00000138795.10	chr4:108167748:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1166:17342:22999	.	NO_LDAS	0.0009	GT	1.2419	AG	1.3753	"[""INTERCHROMOSOMAL[chr16--chr4]""]"	chr16:58464269-chr4:108167748	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NDRG2--HECW1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NDRG2^ENSG00000165795.23	chr14:21019116:-	HECW1^ENSG00000002746.15	chr7:43500748:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1395:2068:25493	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7819	"[""INTERCHROMOSOMAL[chr14--chr7]""]"	chr14:21019116-chr7:43500748	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NCOA4--TIMM23	1	0	1.0	0.0	ONLY_REF_SPLICE	NCOA4^ENSG00000266412.6	chr10:46009411:-	TIMM23^ENSG00000265354.4	chr10:46003203:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:40447:29277	.	YES_LDAS	0.0034	GT	1.8892	AG	1.7968	"[""INTRACHROMOSOMAL[chr10:0.00Mb]"",""LOCAL_INVERSION:-:+:[1346]""]"	chr10:46009411-chr10:46003203	False			0	Read count too low: 1 < 8	FAIL	1
NCCRP1--RPL13A	1	0	0.33	0.0	INCL_NON_REF_SPLICE	NCCRP1^ENSG00000188505.5	chr19:39197319:+	RPL13A^ENSG00000142541.18	chr19:49490262:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1125:25488:6675	.	NO_LDAS	0.0011	GT	1.4566	AG	1.9329	"[""INTRACHROMOSOMAL[chr19:10.29Mb]""]"	chr19:39197319-chr19:49490262	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NBR2--AC005670.3	1	0	0.33	0.0	ONLY_REF_SPLICE	NBR2^ENSG00000198496.12	chr17:43138922:+	AC005670.3^ENSG00000262879.6	chr17:47033381:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1102:49006:28016	.	YES_LDAS	0.0011	GT	1.9329	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:3.83Mb]""]"	chr17:43138922-chr17:47033381	False			0	Read count too low: 1 < 8	FAIL	1
NBR1--WDR4P2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NBR1^ENSG00000188554.15	chr17:43186453:+	WDR4P2^ENSG00000229462.1	chr2:68447861:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1474:34501:9281	.	NO_LDAS	0.0034	GT	1.7465	AG	1.6049	"[""INTERCHROMOSOMAL[chr17--chr2]""]"	chr17:43186453-chr2:68447861	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NBPF9--AC021218.1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	NBPF9^ENSG00000269713.7	chr1:149059700:-	AC021218.1^ENSG00000204876.4	chr7:155964566:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1465:40447:27679	.	YES_LDAS	0.0017	GT	1.5546	AG	1.8256	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:149059700-chr7:155964566	False			0	Read count too low: 1 < 8	FAIL	1
NBPF9--AC021218.1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	NBPF9^ENSG00000269713.7	chr1:149056512:-	AC021218.1^ENSG00000204876.4	chr7:155964566:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1465:40447:27679	.	YES_LDAS	0.0017	GT	1.5546	AG	1.8256	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:149056512-chr7:155964566	False			0	Read count too low: 1 < 8	FAIL	1
NBPF12--ANKS1A	1	0	0.04	0.0	ONLY_REF_SPLICE	NBPF12^ENSG00000268043.7	chr1:146989746:+	ANKS1A^ENSG00000064999.15	chr6:35017473:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1206:33311:2822	.	YES_LDAS	0.0001	GT	1.9086	AG	1.585	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:146989746-chr6:35017473	False			0	Read count too low: 1 < 8	FAIL	1
NBPF12--ANKS1A	1	0	0.04	0.0	ONLY_REF_SPLICE	NBPF12^ENSG00000268043.7	chr1:146984985:+	ANKS1A^ENSG00000064999.15	chr6:35017473:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1206:33311:2822	.	YES_LDAS	0.0001	GT	1.9086	AG	1.585	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:146984985-chr6:35017473	False			0	Read count too low: 1 < 8	FAIL	1
NBPF10--AC113618.2	1	0	0.2	0.0	INCL_NON_REF_SPLICE	NBPF10^ENSG00000271425.9	chr1:146156480:-	AC113618.2^ENSG00000286160.2	chr2:238715915:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1450:18054:11705	.	NO_LDAS	0.0007	GT	1.9219	AG	1.6402	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:146156480-chr2:238715915	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NBPF1--PIGF	1	0	0.08	0.0	INCL_NON_REF_SPLICE	NBPF1^ENSG00000219481.10	chr1:16589899:-	PIGF^ENSG00000151665.13	chr2:46615181:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1363:37356:24036	.	YES_LDAS	0.0003	GT	1.8892	AG	1.5329	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:16589899-chr2:46615181	False			0	Read count too low: 1 < 8	FAIL	1
NBPF1--PIGF	1	0	0.08	0.0	INCL_NON_REF_SPLICE	NBPF1^ENSG00000219481.10	chr1:16583594:-	PIGF^ENSG00000151665.13	chr2:46615181:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1363:37356:24036	.	YES_LDAS	0.0003	GT	1.8892	AG	1.5329	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:16583594-chr2:46615181	False			0	Read count too low: 1 < 8	FAIL	1
NBPF1--PIGF	1	0	0.08	0.0	INCL_NON_REF_SPLICE	NBPF1^ENSG00000219481.10	chr1:16577317:-	PIGF^ENSG00000151665.13	chr2:46615181:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1363:37356:24036	.	YES_LDAS	0.0003	GT	1.8892	AG	1.5329	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:16577317-chr2:46615181	False			0	Read count too low: 1 < 8	FAIL	1
NBAS--PDE6A	1	0	0.5	0.0	INCL_NON_REF_SPLICE	NBAS^ENSG00000151779.13	chr2:15328303:-	PDE6A^ENSG00000132915.11	chr5:149867234:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2462:29841:17240	.	NO_LDAS	0.0017	GT	1.8062	AG	1.7465	"[""INTERCHROMOSOMAL[chr2--chr5]""]"	chr2:15328303-chr5:149867234	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NAIP--NUCKS1	1	0	0.2	0.0	ONLY_REF_SPLICE	NAIP^ENSG00000249437.8	chr5:70998724:-	NUCKS1^ENSG00000069275.13	chr1:205729621:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1288:20529:18740	.	YES_LDAS	0.0007	GT	1.9329	AG	1.5656	"[""INTERCHROMOSOMAL[chr5--chr1]""]"	chr5:70998724-chr1:205729621	False			0	Read count too low: 1 < 8	FAIL	1
NAGA--CACTIN	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NAGA^ENSG00000198951.12	chr22:42070591:-	CACTIN^ENSG00000105298.14	chr19:3626700:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2178:1340:25690	.	NO_LDAS	0.0034	GT	1.4295	AG	1.7465	"[""INTERCHROMOSOMAL[chr22--chr19]""]"	chr22:42070591-chr19:3626700	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NACA4P--GABRG3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	NACA4P^ENSG00000228224.3	chr8:101369401:+	GABRG3^ENSG00000182256.13	chr15:27532895:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1131:21055:7684	.	NO_LDAS	0.0034	GT	1.9086	AG	1.7056	"[""INTERCHROMOSOMAL[chr8--chr15]""]"	chr8:101369401-chr15:27532895	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
NAA25--CCDC152	1	0	0.5	0.0	INCL_NON_REF_SPLICE	NAA25^ENSG00000111300.10	chr12:112039500:-	CCDC152^ENSG00000198865.10	chr5:42801160:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2490:46741:8735	.	NO_LDAS	0.0017	GT	1.9656	AG	1.7819	"[""INTERCHROMOSOMAL[chr12--chr5]""]"	chr12:112039500-chr5:42801160	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MYOM2--ZNF629	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MYOM2^ENSG00000036448.10	chr8:2057712:+	ZNF629^ENSG00000102870.6	chr16:30783613:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1367:2327:27035	.	NO_LDAS	0.0034	GT	1.7232	AG	1.9899	"[""INTERCHROMOSOMAL[chr8--chr16]""]"	chr8:2057712-chr16:30783613	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MYOCD--AP000547.3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MYOCD^ENSG00000141052.18	chr17:12752589:+	AP000547.3^ENSG00000283633.1	chr22:16612894:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1338:13548:24190	.	NO_LDAS	0.0034	GT	1.8892	AG	1.3996	"[""INTERCHROMOSOMAL[chr17--chr22]""]"	chr17:12752589-chr22:16612894	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MYO5B--AFG3L2	1	0	1.0	0.0	ONLY_REF_SPLICE	MYO5B^ENSG00000167306.20	chr18:50194767:-	AFG3L2^ENSG00000141385.10	chr18:12371691:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1163:26888:28941	.	YES_LDAS	0.0034	GT	1.9329	AG	1.7232	"[""INTRACHROMOSOMAL[chr18:37.45Mb]""]"	chr18:50194767-chr18:12371691	False			0	Read count too low: 1 < 8	FAIL	1
MYO1E--C5orf51	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MYO1E^ENSG00000157483.9	chr15:59178422:-	C5orf51^ENSG00000205765.9	chr5:41920086:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1315:49103:21766	.	NO_LDAS	0.0034	GT	1.8295	AG	1.5058	"[""INTERCHROMOSOMAL[chr15--chr5]""]"	chr15:59178422-chr5:41920086	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MYO1B--GOLPH3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MYO1B^ENSG00000128641.19	chr2:191245591:+	GOLPH3^ENSG00000113384.14	chr5:32173909:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1425:28013:1659	.	NO_LDAS	0.0034	GC	1.6402	AG	1.5058	"[""INTERCHROMOSOMAL[chr2--chr5]""]"	chr2:191245591-chr5:32173909	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MYO10--EDARADD	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MYO10^ENSG00000145555.15	chr5:16702543:-	EDARADD^ENSG00000186197.15	chr1:236502869:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1262:10239:3662	.	NO_LDAS	0.0034	GT	1.6402	AG	0.8366	"[""INTERCHROMOSOMAL[chr5--chr1]""]"	chr5:16702543-chr1:236502869	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MYLK--AARS2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MYLK^ENSG00000065534.19	chr3:123700519:-	AARS2^ENSG00000124608.5	chr6:44301266:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2432:25739:20281	.	NO_LDAS	0.0034	GT	1.9086	AG	1.6402	"[""INTERCHROMOSOMAL[chr3--chr6]""]"	chr3:123700519-chr6:44301266	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MYB--HBS1L	1	0	1.0	0.0	ONLY_REF_SPLICE	MYB^ENSG00000118513.19	chr6:135181536:+	HBS1L^ENSG00000112339.15	chr6:135002842:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1225:33239:9421	.	NO_LDAS	0.0034	GT	1.5656	AG	1.8295	"[""INTRACHROMOSOMAL[chr6:0.08Mb]"",""LOCAL_INVERSION:+:-:[78252]""]"	chr6:135181536-chr6:135002842	False			0	Read count too low: 1 < 8	FAIL	1
MXRA5--SHC3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MXRA5^ENSG00000101825.8	chrX:3320530:-	SHC3^ENSG00000148082.10	chr9:89037402:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2320:39314:5652	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chrX--chr9]""]"	chrX:3320530-chr9:89037402	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MUCL1--SGCE	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MUCL1^ENSG00000172551.11	chr12:54856877:+	SGCE^ENSG00000127990.19	chr7:94624237:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1101:48496:21136	.	NO_LDAS	0.0034	GT	1.6895	AG	1.9329	"[""INTERCHROMOSOMAL[chr12--chr7]""]"	chr12:54856877-chr7:94624237	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MTURN--TNS3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MTURN^ENSG00000180354.16	chr7:30158161:+	TNS3^ENSG00000136205.17	chr7:47439594:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1104:23757:10711	.	YES_LDAS	0.0034	GC	1.8892	AG	1.9329	"[""INTRACHROMOSOMAL[chr7:17.11Mb]""]"	chr7:30158161-chr7:47439594	False			0	Read count too low: 1 < 8	FAIL	1
MTND6P22--THRB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MTND6P22^ENSG00000270230.1	chr5:100046965:+	THRB^ENSG00000151090.20	chr3:24165363:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1238:23312:21542	.	NO_LDAS	0.0034	GT	1.8323	AG	1.5546	"[""INTERCHROMOSOMAL[chr5--chr3]""]"	chr5:100046965-chr3:24165363	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MTCL1--NFATC3	1	0	1.0	0.0	ONLY_REF_SPLICE	MTCL1^ENSG00000168502.17	chr18:8798291:+	NFATC3^ENSG00000072736.19	chr16:68214329:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1318:20141:1757	.	YES_LDAS	0.0034	GT	1.4295	AG	1.7819	"[""INTERCHROMOSOMAL[chr18--chr16]""]"	chr18:8798291-chr16:68214329	False			0	Read count too low: 1 < 8	FAIL	1
MT1X--XPO7	1	0	0.5	0.0	INCL_NON_REF_SPLICE	MT1X^ENSG00000187193.9	chr16:56683230:+	XPO7^ENSG00000130227.17	chr8:22002130:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2166:28627:21108	.	NO_LDAS	0.0017	GT	1.9086	AG	1.5301	"[""INTERCHROMOSOMAL[chr16--chr8]""]"	chr16:56683230-chr8:22002130	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MT1DP--MT1G	1	0	0.5	0.0	ONLY_REF_SPLICE	MT1DP^ENSG00000205361.8	chr16:56644176:+	MT1G^ENSG00000125144.14	chr16:56666970:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1459:7245:24765	.	YES_LDAS	0.0017	GT	1.9086	AG	1.5656	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr16:0.02Mb]"",""LOCAL_INVERSION:+:-:[21944]""]"	chr16:56644176-chr16:56666970	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
MST1L--LINC01902	1	0	0.5	0.0	INCL_NON_REF_SPLICE	MST1L^ENSG00000186715.11	chr1:16758675:-	LINC01902^ENSG00000283503.2	chr18:39887131:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1183:46474:6535	.	NO_LDAS	0.0017	GT	1.5546	AG	1.9656	"[""INTERCHROMOSOMAL[chr1--chr18]""]"	chr1:16758675-chr18:39887131	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MSANTD2--NCALD	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MSANTD2^ENSG00000120458.13	chr11:124772994:-	NCALD^ENSG00000104490.18	chr8:101687633:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1184:48456:4839	.	NO_LDAS	0.0034	GT	1.9219	AG	1.7232	"[""INTERCHROMOSOMAL[chr11--chr8]""]"	chr11:124772994-chr8:101687633	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MROH8--TNFAIP8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MROH8^ENSG00000101353.15	chr20:37179349:-	TNFAIP8^ENSG00000145779.8	chr5:119392816:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2268:38311:27315	.	NO_LDAS	0.0034	GC	1.8295	AG	1.9899	"[""INTERCHROMOSOMAL[chr20--chr5]""]"	chr20:37179349-chr5:119392816	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MRAS--DONSON	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MRAS^ENSG00000158186.13	chr3:138402565:+	DONSON^ENSG00000159147.18	chr21:33577704:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1318:3451:26937	.	NO_LDAS	0.0034	GT	1.5219	AG	0.971	"[""INTERCHROMOSOMAL[chr3--chr21]""]"	chr3:138402565-chr21:33577704	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MPZL1--LEF1	1	0	0.25	0.0	INCL_NON_REF_SPLICE	MPZL1^ENSG00000197965.12	chr1:167722026:+	LEF1^ENSG00000138795.10	chr4:108167748:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1166:17342:22999	.	NO_LDAS	0.0009	GT	1.5546	AG	1.3753	"[""INTERCHROMOSOMAL[chr1--chr4]""]"	chr1:167722026-chr4:108167748	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MPP7--USP16	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MPP7^ENSG00000150054.18	chr10:28058491:-	USP16^ENSG00000156256.15	chr21:29042777:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1415:13653:17731	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7232	"[""INTERCHROMOSOMAL[chr10--chr21]""]"	chr10:28058491-chr21:29042777	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MPP6--ALG9	1	0	1.0	0.0	ONLY_REF_SPLICE	MPP6^ENSG00000105926.16	chr7:24573593:+	ALG9^ENSG00000086848.15	chr11:111786520:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1128:29946:3915	.	YES_LDAS	0.0034	GT	1.7968	AG	1.9329	"[""INTERCHROMOSOMAL[chr7--chr11]""]"	chr7:24573593-chr11:111786520	False			0	Read count too low: 1 < 8	FAIL	1
MOV10L1--AL133380.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MOV10L1^ENSG00000073146.16	chr22:50090059:+	AL133380.1^ENSG00000251508.1	chr1:233295617:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1198:1218:28926	.	NO_LDAS	0.0034	GT	1.231	AG	1.053	"[""INTERCHROMOSOMAL[chr22--chr1]""]"	chr22:50090059-chr1:233295617	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MORN1--ZNF581	1	0	1.0	0.0	ONLY_REF_SPLICE	MORN1^ENSG00000116151.14	chr1:2357432:-	ZNF581^ENSG00000171425.10	chr19:55644553:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1393:29671:7530	.	YES_LDAS	0.0034	GT	1.5656	AG	1.7232	"[""INTERCHROMOSOMAL[chr1--chr19]""]"	chr1:2357432-chr19:55644553	False			0	Read count too low: 1 < 8	FAIL	1
MNT--INCENP	1	0	0.5	0.0	INCL_NON_REF_SPLICE	MNT^ENSG00000070444.15	chr17:2394043:-	INCENP^ENSG00000149503.13	chr11:62146707:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1257:46992:21920	.	NO_LDAS	0.0017	GT	1.9656	AG	1.4566	"[""INTERCHROMOSOMAL[chr17--chr11]""]"	chr17:2394043-chr11:62146707	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
MNAT1--PIKFYVE	1	0	1.0	0.0	ONLY_REF_SPLICE	MNAT1^ENSG00000020426.11	chr14:60879835:+	PIKFYVE^ENSG00000115020.17	chr2:208312236:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1206:30334:7137	.	YES_LDAS	0.0034	GT	1.8892	AG	1.6729	"[""INTERCHROMOSOMAL[chr14--chr2]""]"	chr14:60879835-chr2:208312236	False			0	Read count too low: 1 < 8	FAIL	1
MMP24OS--PDE4D	1	0	1.0	0.0	ONLY_REF_SPLICE	MMP24OS^ENSG00000126005.17	chr20:35272005:-	PDE4D^ENSG00000113448.19	chr5:58993465:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1101:21338:27203	.	NO_LDAS	0.0034	GT	1.8892	AG	1.7819	"[""INTERCHROMOSOMAL[chr20--chr5]""]"	chr20:35272005-chr5:58993465	False			0	Read count too low: 1 < 8	FAIL	1
MITF--SEC61A2	1	0	1.0	0.0	ONLY_REF_SPLICE	MITF^ENSG00000187098.17	chr3:69739701:+	SEC61A2^ENSG00000065665.21	chr10:12169258:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1230:4107:1420	.	YES_LDAS	0.0034	GT	1.8256	AG	1.8295	"[""INTERCHROMOSOMAL[chr3--chr10]""]"	chr3:69739701-chr10:12169258	False			0	Read count too low: 1 < 8	FAIL	1
MIR99AHG--CXADR	1	0	1.0	0.0	ONLY_REF_SPLICE	MIR99AHG^ENSG00000215386.13	chr21:16419741:+	CXADR^ENSG00000154639.19	chr21:17547027:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1109:42308:8987	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTRACHROMOSOMAL[chr21:0.87Mb]""]"	chr21:16419741-chr21:17547027	False			0	Read count too low: 1 < 8	FAIL	1
MIR7-3HG--LAPTM4A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MIR7-3HG^ENSG00000176840.12	chr19:4769376:+	LAPTM4A^ENSG00000068697.7	chr2:20041011:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2114:31960:13625	.	NO_LDAS	0.0034	GT	1.7968	AG	1.9086	"[""INTERCHROMOSOMAL[chr19--chr2]""]"	chr19:4769376-chr2:20041011	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MIR500A--DGCR8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MIR500A^ENSG00000207785.1	chrX:50008470:+	DGCR8^ENSG00000128191.16	chr22:20086353:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2170:9365:17759	.	NO_LDAS	0.0034	GT	1.7968	AG	1.7056	"[""INTERCHROMOSOMAL[chrX--chr22]""]"	chrX:50008470-chr22:20086353	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MIR3681HG--CLOCK	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MIR3681HG^ENSG00000224184.6	chr2:12314405:+	CLOCK^ENSG00000134852.15	chr4:55510004:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2210:4713:6731	.	NO_LDAS	0.0034	GT	1.7465	AG	1.8892	"[""INTERCHROMOSOMAL[chr2--chr4]""]"	chr2:12314405-chr4:55510004	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MIR3178--HCCS	1	0	0.25	0.0	INCL_NON_REF_SPLICE	MIR3178^ENSG00000266232.1	chr16:2531979:-	HCCS^ENSG00000004961.15	chrX:11111357:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1123:6121:24667	.	NO_LDAS	0.0009	GT	1.5329	AG	0.9183	"[""INTERCHROMOSOMAL[chr16--chrX]""]"	chr16:2531979-chrX:11111357	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MIPEPP3--DLG1	1	0	1.0	0.0	ONLY_REF_SPLICE	MIPEPP3^ENSG00000233325.3	chr13:21301618:+	DLG1^ENSG00000075711.21	chr3:197282845:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1241:42194:8735	.	YES_LDAS	0.0034	GT	1.9656	AG	1.5628	"[""INTERCHROMOSOMAL[chr13--chr3]""]"	chr13:21301618-chr3:197282845	False			0	Read count too low: 1 < 8	FAIL	1
MIPEP--TNFRSF19	1	0	1.0	0.0	ONLY_REF_SPLICE	MIPEP^ENSG00000027001.10	chr13:23836240:-	TNFRSF19^ENSG00000127863.16	chr13:23667980:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1147:48642:29151	.	YES_LDAS	0.0034	GT	1.9656	AG	1.5058	"[""TumorFusionsNAR2018"",""INTRACHROMOSOMAL[chr13:0.05Mb]"",""LOCAL_INVERSION:-:+:[54085]""]"	chr13:23836240-chr13:23667980	False			0	Read count too low: 1 < 8	FAIL	1
MINDY4--AHR	1	0	1.0	0.0	ONLY_REF_SPLICE	MINDY4^ENSG00000106125.14	chr7:30791574:+	AHR^ENSG00000106546.14	chr7:17309936:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1205:49920:7768	.	YES_LDAS	0.0034	GT	1.7968	AG	1.8323	"[""INTRACHROMOSOMAL[chr7:13.43Mb]""]"	chr7:30791574-chr7:17309936	False			0	Read count too low: 1 < 8	FAIL	1
MIER2--DAB1	1	0	0.5	0.0	ONLY_REF_SPLICE	MIER2^ENSG00000105556.11	chr19:340514:-	DAB1^ENSG00000173406.16	chr1:58506209:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2360:30626:10332	.	NO_LDAS	0.0017	GT	1.7819	AG	1.9899	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:340514-chr1:58506209	False			0	Read count too low: 1 < 8	FAIL	1
MIA3--MYSM1	1	0	1.0	0.0	ONLY_REF_SPLICE	MIA3^ENSG00000154305.18	chr1:222645685:+	MYSM1^ENSG00000162601.11	chr1:58685251:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1429:24137:21794	.	YES_LDAS	0.0034	GT	1.9219	AG	1.9899	"[""INTRACHROMOSOMAL[chr1:163.92Mb]""]"	chr1:222645685-chr1:58685251	False			0	Read count too low: 1 < 8	FAIL	1
MFSD14B--PRELP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MFSD14B^ENSG00000148110.16	chr9:94438528:+	PRELP^ENSG00000188783.6	chr1:203489677:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2326:25076:4531	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8295	"[""INTERCHROMOSOMAL[chr9--chr1]""]"	chr9:94438528-chr1:203489677	False			0	Read count too low: 1 < 8	FAIL	1
MFSD14A--FRRS1	1	0	1.0	0.0	ONLY_REF_SPLICE	MFSD14A^ENSG00000156875.14	chr1:100038316:+	FRRS1^ENSG00000156869.14	chr1:99715672:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2372:14656:23868	.	NO_LDAS	0.0034	GT	1.5058	AG	1.9329	"[""INTRACHROMOSOMAL[chr1:0.27Mb]""]"	chr1:100038316-chr1:99715672	False			0	Read count too low: 1 < 8	FAIL	1
MFN2--GID4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MFN2^ENSG00000116688.18	chr1:11992690:+	GID4^ENSG00000141034.10	chr17:18066731:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1342:6954:18768	.	NO_LDAS	0.0034	GT	1.5058	AG	1.6895	"[""INTERCHROMOSOMAL[chr1--chr17]""]"	chr1:11992690-chr17:18066731	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
METTL21A--PLEKHM3	1	0	1.0	0.0	ONLY_REF_SPLICE	METTL21A^ENSG00000144401.14	chr2:207621806:-	PLEKHM3^ENSG00000178385.15	chr2:207977586:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:36976:13597	.	YES_LDAS	0.0034	GT	1.5656	AG	1.6402	"[""TumorFusionsNAR2018"",""ChimerSeq"",""INTRACHROMOSOMAL[chr2:0.20Mb]""]"	chr2:207621806-chr2:207977586	False			0	Read count too low: 1 < 8	FAIL	1
METAP2--FGD5P1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	METAP2^ENSG00000111142.14	chr12:95476178:+	FGD5P1^ENSG00000275340.1	chr3:13935453:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1481:7974:11733	.	NO_LDAS	0.0034	GT	1.5058	AG	1.5546	"[""INTERCHROMOSOMAL[chr12--chr3]""]"	chr12:95476178-chr3:13935453	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MEPCE--TUBGCP6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MEPCE^ENSG00000146834.14	chr7:100428890:+	TUBGCP6^ENSG00000128159.12	chr22:50222554:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1322:11048:21234	.	NO_LDAS	0.0034	GT	1.4716	AG	1.7968	"[""INTERCHROMOSOMAL[chr7--chr22]""]"	chr7:100428890-chr22:50222554	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MEIS2--PBRM1	1	0	1.0	0.0	ONLY_REF_SPLICE	MEIS2^ENSG00000134138.20	chr15:37083771:-	PBRM1^ENSG00000163939.18	chr3:52668645:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1117:16533:6185	.	YES_LDAS	0.0034	GT	1.7819	AG	1.6402	"[""INTERCHROMOSOMAL[chr15--chr3]""]"	chr15:37083771-chr3:52668645	False			0	Read count too low: 1 < 8	FAIL	1
MED6--TRAPPC6B	1	0	1.0	0.0	ONLY_REF_SPLICE	MED6^ENSG00000133997.12	chr14:70593296:-	TRAPPC6B^ENSG00000182400.15	chr14:39159550:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2296:20990:2892	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8323	"[""INTRACHROMOSOMAL[chr14:31.41Mb]""]"	chr14:70593296-chr14:39159550	False			0	Read count too low: 1 < 8	FAIL	1
MED20--USP49	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MED20^ENSG00000124641.16	chr6:41907016:-	USP49^ENSG00000164663.14	chr6:41871637:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2422:41733:28926	.	YES_LDAS	0.0034	GT	1.5656	AG	1.4295	"[""Babiceanu_Normal"",""INTRACHROMOSOMAL[chr6:0.01Mb]"",""NEIGHBORS[9993]""]"	chr6:41907016-chr6:41871637	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
MED20--USP49	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MED20^ENSG00000124641.16	chr6:41906776:-	USP49^ENSG00000164663.14	chr6:41871637:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1106:6275:4531	.	NO_LDAS	0.0034	GT	1.9329	AG	1.4295	"[""Babiceanu_Normal"",""INTRACHROMOSOMAL[chr6:0.01Mb]"",""NEIGHBORS[9993]""]"	chr6:41906776-chr6:41871637	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
MED14--HDAC8	1	0	1.0	0.0	ONLY_REF_SPLICE	MED14^ENSG00000180182.11	chrX:40726746:-	HDAC8^ENSG00000147099.21	chrX:72351838:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1379:49006:14031	.	YES_LDAS	0.0034	GT	1.7819	AG	1.7465	"[""INTRACHROMOSOMAL[chrX:31.59Mb]""]"	chrX:40726746-chrX:72351838	False			0	Read count too low: 1 < 8	FAIL	1
MED13--ZFAND6	1	0	1.0	0.0	ONLY_REF_SPLICE	MED13^ENSG00000108510.10	chr17:62063067:-	ZFAND6^ENSG00000086666.19	chr15:80120328:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1165:39921:25451	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8892	"[""INTERCHROMOSOMAL[chr17--chr15]""]"	chr17:62063067-chr15:80120328	False			0	Read count too low: 1 < 8	FAIL	1
ME3--AL359764.2	1	0	1.0	0.0	ONLY_REF_SPLICE	ME3^ENSG00000151376.18	chr11:86671762:-	AL359764.2^ENSG00000287516.1	chr1:241430227:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2278:42486:9463	.	YES_LDAS	0.0034	GT	1.7819	AG	1.7819	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:86671762-chr1:241430227	False			0	Read count too low: 1 < 8	FAIL	1
MDS2--PLEKHM3	1	0	0.17	0.0	ONLY_REF_SPLICE	MDS2^ENSG00000197880.9	chr1:23628597:+	PLEKHM3^ENSG00000178385.15	chr2:207908577:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1285:16654:7095	.	NO_LDAS	0.0006	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:23628597-chr2:207908577	False			0	Read count too low: 1 < 8	FAIL	1
MDGA1--AL110114.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MDGA1^ENSG00000112139.17	chr6:37632334:-	AL110114.1^ENSG00000286787.1	chr20:1037980:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1147:9163:16456	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9086	"[""INTERCHROMOSOMAL[chr6--chr20]""]"	chr6:37632334-chr20:1037980	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MCFD2--DMWD	1	0	0.5	0.0	INCL_NON_REF_SPLICE	MCFD2^ENSG00000180398.13	chr2:46909019:-	DMWD^ENSG00000185800.12	chr19:45789309:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1422:20845:25311	.	NO_LDAS	0.0017	GT	1.7819	AG	1.7056	"[""INTERCHROMOSOMAL[chr2--chr19]""]"	chr2:46909019-chr19:45789309	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MCC--TCF12	1	0	1.0	0.0	ONLY_REF_SPLICE	MCC^ENSG00000171444.18	chr5:113294329:-	TCF12^ENSG00000140262.18	chr15:57091789:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1390:29202:6549	.	NO_LDAS	0.0034	GT	1.8295	AG	1.9899	"[""INTERCHROMOSOMAL[chr5--chr15]""]"	chr5:113294329-chr15:57091789	False			0	Read count too low: 1 < 8	FAIL	1
MAU2--SUGP1	1	0	1.0	0.0	ONLY_REF_SPLICE	MAU2^ENSG00000129933.21	chr19:19354445:+	SUGP1^ENSG00000105705.16	chr19:19276674:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1241:48747:15909	.	YES_LDAS	0.0034	GT	1.9329	AG	1.7819	"[""INTRACHROMOSOMAL[chr19:0.00Mb]"",""LOCAL_INVERSION:+:-:[320]""]"	chr19:19354445-chr19:19276674	False			0	Read count too low: 1 < 8	FAIL	1
MATR3--EXOC6B	1	0	1.0	0.0	ONLY_REF_SPLICE	MATR3^ENSG00000015479.20	chr5:139293772:+	EXOC6B^ENSG00000144036.16	chr2:72741469:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1425:14340:20715	.	YES_LDAS	0.0034	GT	1.8295	AG	1.6895	"[""INTERCHROMOSOMAL[chr5--chr2]""]"	chr5:139293772-chr2:72741469	False			0	Read count too low: 1 < 8	FAIL	1
MAST4--FNIP1	1	0	1.0	0.0	ONLY_REF_SPLICE	MAST4^ENSG00000069020.18	chr5:66899982:+	FNIP1^ENSG00000217128.12	chr5:131677872:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1223:28538:3298	.	YES_LDAS	0.0034	GT	1.7819	AG	1.8323	"[""INTRACHROMOSOMAL[chr5:64.47Mb]""]"	chr5:66899982-chr5:131677872	False			0	Read count too low: 1 < 8	FAIL	1
MAST4--EPN1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MAST4^ENSG00000069020.18	chr5:67165448:+	EPN1^ENSG00000063245.15	chr19:55695148:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1439:30529:13415	.	NO_LDAS	0.0034	GT	1.8256	AG	1.7819	"[""INTERCHROMOSOMAL[chr5--chr19]""]"	chr5:67165448-chr19:55695148	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MASP1--PTK7	1	0	0.33	0.0	INCL_NON_REF_SPLICE	MASP1^ENSG00000127241.18	chr3:187253240:-	PTK7^ENSG00000112655.16	chr6:43132042:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1147:26880:17689	.	NO_LDAS	0.0011	GT	1.5058	AG	1.9086	"[""INTERCHROMOSOMAL[chr3--chr6]""]"	chr3:187253240-chr6:43132042	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MARF1--AC003973.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MARF1^ENSG00000166783.22	chr16:15635656:-	AC003973.1^ENSG00000269504.3	chr19:22022244:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2117:29234:21290	.	NO_LDAS	0.0034	GT	1.9219	AG	1.7232	"[""INTERCHROMOSOMAL[chr16--chr19]""]"	chr16:15635656-chr19:22022244	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MAPK8--ARHGAP22	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MAPK8^ENSG00000107643.16	chr10:48325933:+	ARHGAP22^ENSG00000128805.15	chr10:48479764:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1119:8742:25536	.	NO_LDAS	0.0034	GT	1.6402	AG	1.5546	"[""INTRACHROMOSOMAL[chr10:0.01Mb]"",""LOCAL_INVERSION:+:-:[6676]""]"	chr10:48325933-chr10:48479764	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MAPK3--SHISAL1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MAPK3^ENSG00000102882.12	chr16:30116636:-	SHISAL1^ENSG00000138944.8	chr22:44247036:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1159:46943:5806	.	YES_LDAS	0.0034	GT	1.7056	AG	1.7968	"[""INTERCHROMOSOMAL[chr16--chr22]""]"	chr16:30116636-chr22:44247036	False			0	Read count too low: 1 < 8	FAIL	1
MAP4K2--SOX13	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MAP4K2^ENSG00000168067.12	chr11:64788067:-	SOX13^ENSG00000143842.15	chr1:204114563:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1382:32769:8132	.	NO_LDAS	0.0034	GT	1.8295	AG	1.8062	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:64788067-chr1:204114563	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MAP3K9--APBB1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MAP3K9^ENSG00000006432.16	chr14:70809046:-	APBB1^ENSG00000166313.19	chr11:6410879:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1357:1607:5806	.	NO_LDAS	0.0034	GT	1.1589	AG	1.3383	"[""INTERCHROMOSOMAL[chr14--chr11]""]"	chr14:70809046-chr11:6410879	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MAP3K6--AC087239.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MAP3K6^ENSG00000142733.17	chr1:27355409:-	AC087239.1^ENSG00000278743.1	chr12:25385932:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1324:44872:10010	.	NO_LDAS	0.0034	GT	1.7819	AG	1.2419	"[""INTERCHROMOSOMAL[chr1--chr12]""]"	chr1:27355409-chr12:25385932	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MAP2K4--STX8	1	0	1.0	0.0	ONLY_REF_SPLICE	MAP2K4^ENSG00000065559.15	chr17:12021001:+	STX8^ENSG00000170310.15	chr17:9505162:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1222:21864:11803	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:2.44Mb]""]"	chr17:12021001-chr17:9505162	False			0	Read count too low: 1 < 8	FAIL	1
MAN2B2--ZNF302	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MAN2B2^ENSG00000013288.9	chr4:6589160:+	ZNF302^ENSG00000089335.21	chr19:34685096:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1391:29978:8511	.	NO_LDAS	0.0034	GT	1.7465	AG	1.5301	"[""INTERCHROMOSOMAL[chr4--chr19]""]"	chr4:6589160-chr19:34685096	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MAN2B1--IFNLR1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MAN2B1^ENSG00000104774.13	chr19:12649906:-	IFNLR1^ENSG00000185436.12	chr1:24156276:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1228:49888:17941	.	NO_LDAS	0.0034	GT	1.053	AG	1.9086	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:12649906-chr1:24156276	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MAN2A2--SH3PXD2A	1	0	1.0	0.0	ONLY_REF_SPLICE	MAN2A2^ENSG00000196547.15	chr15:90916256:+	SH3PXD2A^ENSG00000107957.16	chr10:103661114:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1231:16193:13555	.	YES_LDAS	0.0034	GT	1.8295	AG	1.6895	"[""INTERCHROMOSOMAL[chr15--chr10]""]"	chr15:90916256-chr10:103661114	False			0	Read count too low: 1 < 8	FAIL	1
MAML2--SBF2	1	0	1.0	0.0	ONLY_REF_SPLICE	MAML2^ENSG00000184384.14	chr11:96341383:-	SBF2^ENSG00000133812.17	chr11:10193987:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1133:51943:28030	.	NO_LDAS	0.0034	GT	1.9329	AG	1.8323	"[""INTRACHROMOSOMAL[chr11:85.68Mb]""]"	chr11:96341383-chr11:10193987	False			0	Read count too low: 1 < 8	FAIL	1
MAMDC2--THAP9-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MAMDC2^ENSG00000165072.10	chr9:70170627:+	THAP9-AS1^ENSG00000251022.6	chr4:82894847:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1185:40156:26586	.	YES_LDAS	0.0034	GT	1.9899	AG	1.9329	"[""INTERCHROMOSOMAL[chr9--chr4]""]"	chr9:70170627-chr4:82894847	False			0	Read count too low: 1 < 8	FAIL	1
MAGI3--ADAMTS15	1	0	1.0	0.0	INCL_NON_REF_SPLICE	MAGI3^ENSG00000081026.19	chr1:113590658:+	ADAMTS15^ENSG00000166106.3	chr11:130476074:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1222:51579:21710	.	NO_LDAS	0.0034	GT	1.8892	AG	1.7819	"[""INTERCHROMOSOMAL[chr1--chr11]""]"	chr1:113590658-chr11:130476074	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
MACROH2A2--KDM2A	1	0	1.0	0.0	ONLY_REF_SPLICE	MACROH2A2^ENSG00000099284.15	chr10:70065189:+	KDM2A^ENSG00000173120.15	chr11:67180079:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1288:3920:14970	.	NO_LDAS	0.0034	GT	1.9329	AG	1.9656	"[""INTERCHROMOSOMAL[chr10--chr11]""]"	chr10:70065189-chr11:67180079	False			0	Read count too low: 1 < 8	FAIL	1
LZTS2--AACS	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LZTS2^ENSG00000107816.17	chr10:100999902:+	AACS^ENSG00000081760.17	chr12:125065594:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1233:10611:24204	.	NO_LDAS	0.0034	GT	1.2867	AG	1.6895	"[""INTERCHROMOSOMAL[chr10--chr12]""]"	chr10:100999902-chr12:125065594	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LYST--EXOC2	1	0	1.0	0.0	ONLY_REF_SPLICE	LYST^ENSG00000143669.14	chr1:235830226:-	EXOC2^ENSG00000112685.14	chr6:532610:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1405:25893:29179	.	YES_LDAS	0.0034	GT	1.8323	AG	1.9899	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:235830226-chr6:532610	False			0	Read count too low: 1 < 8	FAIL	1
LYRM4--ZFAND3	1	0	1.0	0.0	ONLY_REF_SPLICE	LYRM4^ENSG00000214113.11	chr6:5216618:-	ZFAND3^ENSG00000156639.12	chr6:37929959:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1106:8483:4853	.	YES_LDAS	0.0034	GT	1.9899	AG	1.9656	"[""INTRACHROMOSOMAL[chr6:32.56Mb]""]"	chr6:5216618-chr6:37929959	False			0	Read count too low: 1 < 8	FAIL	1
LYPLA1--ATP6V1H	1	0	1.0	0.0	ONLY_REF_SPLICE	LYPLA1^ENSG00000120992.18	chr8:54100908:-	ATP6V1H^ENSG00000047249.18	chr8:53772167:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1147:40301:11677	.	YES_LDAS	0.0034	GT	1.8062	AG	1.5329	"[""INTRACHROMOSOMAL[chr8:0.20Mb]""]"	chr8:54100908-chr8:53772167	False			0	Read count too low: 1 < 8	FAIL	1
LSM8--CDC42P6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LSM8^ENSG00000128534.8	chr7:118185408:+	CDC42P6^ENSG00000237350.1	chr4:22728000:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1319:17981:10570	.	NO_LDAS	0.0034	GT	1.9329	AG	1.9086	"[""INTERCHROMOSOMAL[chr7--chr4]""]"	chr7:118185408-chr4:22728000	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LRRC69--OTUD6B	1	0	1.0	0.0	ONLY_REF_SPLICE	LRRC69^ENSG00000214954.8	chr8:91200792:+	OTUD6B^ENSG00000155100.11	chr8:91078356:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1464:1316:4013	.	YES_LDAS	0.0034	GT	1.8892	AG	1.6402	"[""DEEPEST2019"",""INTRACHROMOSOMAL[chr8:0.01Mb]"",""LOCAL_REARRANGEMENT:+:[14737]""]"	chr8:91200792-chr8:91078356	False			0	Read count too low: 1 < 8	FAIL	1
LRRC59--FHIT	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LRRC59^ENSG00000108829.10	chr17:50385189:-	FHIT^ENSG00000189283.10	chr3:61042055:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1292:23231:4727	.	NO_LDAS	0.0034	GT	1.5058	AG	1.1589	"[""INTERCHROMOSOMAL[chr17--chr3]""]"	chr17:50385189-chr3:61042055	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LRRC40--AC000068.1	1	0	1.0	0.0	ONLY_REF_SPLICE	LRRC40^ENSG00000066557.6	chr1:70205390:-	AC000068.1^ENSG00000185065.6	chr22:19448442:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2431:18968:10094	.	NO_LDAS	0.0034	GT	1.8892	AG	1.7819	"[""INTERCHROMOSOMAL[chr1--chr22]""]"	chr1:70205390-chr22:19448442	False			0	Read count too low: 1 < 8	FAIL	1
LRRC37A4P--PLEKHM1	1	0	0.5	0.0	ONLY_REF_SPLICE	LRRC37A4P^ENSG00000214425.8	chr17:45508485:-	PLEKHM1^ENSG00000225190.11	chr17:45482525:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1266:15910:26236	.	YES_LDAS	0.0017	GT	1.6895	AG	1.7968	"[""INTRACHROMOSOMAL[chr17:0.02Mb]"",""NEIGHBORS[15992]""]"	chr17:45508485-chr17:45482525	False			0	Read count too low: 1 < 8	FAIL	1
LRRC1--CNTNAP3	1	0	0.33	0.0	ONLY_REF_SPLICE	LRRC1^ENSG00000137269.15	chr6:53899891:+	CNTNAP3^ENSG00000106714.17	chr9:39078920:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1122:48383:14998	.	NO_LDAS	0.0011	GT	1.9086	AG	1.5329	"[""INTERCHROMOSOMAL[chr6--chr9]""]"	chr6:53899891-chr9:39078920	False			0	Read count too low: 1 < 8	FAIL	1
LRPPRC--TET3	1	0	1.0	0.0	ONLY_REF_SPLICE	LRPPRC^ENSG00000138095.19	chr2:43995799:-	TET3^ENSG00000187605.16	chr2:74080498:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1146:12852:4629	.	YES_LDAS	0.0034	GT	1.2729	AG	1.3996	"[""INTRACHROMOSOMAL[chr2:29.99Mb]""]"	chr2:43995799-chr2:74080498	False			0	Read count too low: 1 < 8	FAIL	1
LRPAP1--EIF4B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LRPAP1^ENSG00000163956.13	chr4:3517703:-	EIF4B^ENSG00000063046.18	chr12:53038393:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1189:16703:25536	.	NO_LDAS	0.0034	GT	1.7819	AG	1.4295	"[""INTERCHROMOSOMAL[chr4--chr12]""]"	chr4:3517703-chr12:53038393	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LRP8--WDR1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LRP8^ENSG00000157193.18	chr1:53245477:-	WDR1^ENSG00000071127.17	chr4:10097891:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1464:11161:12294	.	NO_LDAS	0.0034	GT	0.971	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr4]""]"	chr1:53245477-chr4:10097891	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LRP10--MTCYBP43	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LRP10^ENSG00000197324.9	chr14:22872337:+	MTCYBP43^ENSG00000250624.1	chr4:30884711:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1270:10004:1434	.	NO_LDAS	0.0034	GT	1.2729	AG	1.7819	"[""INTERCHROMOSOMAL[chr14--chr4]""]"	chr14:22872337-chr4:30884711	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LPCAT1--COBL	1	0	0.33	0.0	INCL_NON_REF_SPLICE	LPCAT1^ENSG00000153395.10	chr5:1467268:-	COBL^ENSG00000106078.19	chr7:51026658:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:32624:5806	.	NO_LDAS	0.0011	GT	1.4566	AG	1.5656	"[""INTERCHROMOSOMAL[chr5--chr7]""]"	chr5:1467268-chr7:51026658	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LOXL4--ACAD8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LOXL4^ENSG00000138131.4	chr10:98252408:-	ACAD8^ENSG00000151498.12	chr11:134259608:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1187:26055:24639	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9329	"[""INTERCHROMOSOMAL[chr10--chr11]""]"	chr10:98252408-chr11:134259608	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LMOD2--ABCA3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LMOD2^ENSG00000170807.12	chr7:123661986:+	ABCA3^ENSG00000167972.14	chr16:2300092:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:28126:22565	.	NO_LDAS	0.0034	GT	1.2729	AG	1.8256	"[""INTERCHROMOSOMAL[chr7--chr16]""]"	chr7:123661986-chr16:2300092	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LMO7--RIF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LMO7^ENSG00000136153.20	chr13:75858103:+	RIF1^ENSG00000080345.18	chr2:151463494:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2181:10312:10598	.	NO_LDAS	0.0034	GT	1.8892	AG	1.6895	"[""INTERCHROMOSOMAL[chr13--chr2]""]"	chr13:75858103-chr2:151463494	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LMNB2--TPD52L2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LMNB2^ENSG00000176619.13	chr19:2438163:-	TPD52L2^ENSG00000101150.18	chr20:63891452:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1416:22657:12981	.	NO_LDAS	0.0034	GT	1.7465	AG	1.2729	"[""INTERCHROMOSOMAL[chr19--chr20]""]"	chr19:2438163-chr20:63891452	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LMAN2--ZNF346	1	0	1.0	0.0	ONLY_REF_SPLICE	LMAN2^ENSG00000169223.15	chr5:177334284:-	ZNF346^ENSG00000113761.12	chr5:177062058:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1377:30820:19861	.	YES_LDAS	0.0034	GT	1.9086	AG	1.9329	"[""INTRACHROMOSOMAL[chr5:0.25Mb]""]"	chr5:177334284-chr5:177062058	False			0	Read count too low: 1 < 8	FAIL	1
LINC02802--AC245060.4	1	0	0.33	0.0	ONLY_REF_SPLICE	LINC02802^ENSG00000232527.8	chr1:144250225:-	AC245060.4^ENSG00000272779.1	chr22:22303224:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2177:48254:7908	.	YES_LDAS	0.0011	GT	1.9329	AG	1.9219	"[""INTERCHROMOSOMAL[chr1--chr22]""]"	chr1:144250225-chr22:22303224	False			0	Read count too low: 1 < 8	FAIL	1
LINC02709--LAMA4	1	0	0.33	0.0	INCL_NON_REF_SPLICE	LINC02709^ENSG00000245522.2	chr11:9756187:-	LAMA4^ENSG00000112769.20	chr6:112148259:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2101:32591:15363	.	NO_LDAS	0.0011	GT	1.8295	AG	1.7232	"[""INTERCHROMOSOMAL[chr11--chr6]""]"	chr11:9756187-chr6:112148259	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC02651--AC004951.2	1	0	0.33	0.0	ONLY_REF_SPLICE	LINC02651^ENSG00000235645.2	chr10:69691145:+	AC004951.2^ENSG00000239556.4	chr7:43988247:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2220:37146:6465	.	NO_LDAS	0.0011	GT	1.9086	AG	1.7465	"[""INTERCHROMOSOMAL[chr10--chr7]""]"	chr10:69691145-chr7:43988247	False			0	Read count too low: 1 < 8	FAIL	1
LINC02506--SCNM1	1	0	1.0	0.0	ONLY_REF_SPLICE	LINC02506^ENSG00000251129.2	chr4:32155406:+	SCNM1^ENSG00000163156.12	chr1:151166471:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1342:45260:27301	.	NO_LDAS	0.0034	GT	1.9329	AG	1.5628	"[""INTERCHROMOSOMAL[chr4--chr1]""]"	chr4:32155406-chr1:151166471	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
LINC02475--ACTN4P1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC02475^ENSG00000251350.2	chr4:44020113:+	ACTN4P1^ENSG00000213493.3	chr4:116598857:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1401:17568:5400	.	NO_LDAS	0.0034	GT	1.6895	AG	1.7968	"[""INTRACHROMOSOMAL[chr4:72.58Mb]""]"	chr4:44020113-chr4:116598857	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC02370--IRAG1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC02370^ENSG00000230294.4	chr12:131347531:+	IRAG1^ENSG00000072952.19	chr11:10606772:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1236:27721:3116	.	NO_LDAS	0.0034	GC	1.9656	AG	1.5546	"[""INTERCHROMOSOMAL[chr12--chr11]""]"	chr12:131347531-chr11:10606772	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC01620--KDM6A	1	0	1.0	0.0	ONLY_REF_SPLICE	LINC01620^ENSG00000168746.8	chr20:44452023:-	KDM6A^ENSG00000147050.16	chrX:45034931:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2344:5498:24513	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8295	"[""INTERCHROMOSOMAL[chr20--chrX]""]"	chr20:44452023-chrX:45034931	False			0	Read count too low: 1 < 8	FAIL	1
LINC01591--DHX34	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC01591^ENSG00000254083.6	chr8:135234535:+	DHX34^ENSG00000134815.19	chr19:47381980:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2415:8419:26180	.	NO_LDAS	0.0034	GT	1.9086	AG	1.7232	"[""INTERCHROMOSOMAL[chr8--chr19]""]"	chr8:135234535-chr19:47381980	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC01570--PYGB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC01570^ENSG00000260338.2	chr16:5616243:-	PYGB^ENSG00000100994.12	chr20:25276646:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1138:7496:17072	.	NO_LDAS	0.0034	GT	1.371	AG	1.7465	"[""INTERCHROMOSOMAL[chr16--chr20]""]"	chr16:5616243-chr20:25276646	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC01502--ZIC1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	LINC01502^ENSG00000237339.5	chr9:135586774:+	ZIC1^ENSG00000152977.10	chr3:147410068:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1235:7771:10094	.	NO_LDAS	0.0017	GT	1.4256	AG	0.6998	"[""INTERCHROMOSOMAL[chr9--chr3]""]"	chr9:135586774-chr3:147410068	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC01502--CHN2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC01502^ENSG00000237339.5	chr9:135586774:+	CHN2^ENSG00000106069.23	chr7:29398060:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1151:47995:10654	.	NO_LDAS	0.0034	GT	1.4256	AG	0.3534	"[""INTERCHROMOSOMAL[chr9--chr7]""]"	chr9:135586774-chr7:29398060	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC01446--MFSD12	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC01446^ENSG00000205628.4	chr7:53811629:-	MFSD12^ENSG00000161091.13	chr19:3546088:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2144:41555:13961	.	NO_LDAS	0.0034	GT	1.9219	AG	1.5546	"[""INTERCHROMOSOMAL[chr7--chr19]""]"	chr7:53811629-chr19:3546088	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC01342--NR1D2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC01342^ENSG00000223823.1	chr1:1140968:+	NR1D2^ENSG00000174738.13	chr3:23945513:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1242:48472:10528	.	NO_LDAS	0.0034	GT	1.5329	AG	0.9183	"[""INTERCHROMOSOMAL[chr1--chr3]""]"	chr1:1140968-chr3:23945513	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
LINC01278--CLEC16A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC01278^ENSG00000235437.8	chrX:63560825:-	CLEC16A^ENSG00000038532.16	chr16:10977225:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2285:19364:22747	.	NO_LDAS	0.0034	GT	1.9086	AG	1.8295	"[""INTERCHROMOSOMAL[chrX--chr16]""]"	chrX:63560825-chr16:10977225	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC01252--PAN3	1	0	1.0	0.0	ONLY_REF_SPLICE	LINC01252^ENSG00000247157.7	chr12:11549721:+	PAN3^ENSG00000152520.14	chr13:28256292:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1426:24882:2569	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8323	"[""INTERCHROMOSOMAL[chr12--chr13]""]"	chr12:11549721-chr13:28256292	False			0	Read count too low: 1 < 8	FAIL	1
LINC01191--MEAK7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC01191^ENSG00000234199.3	chr2:114000406:+	MEAK7^ENSG00000140950.16	chr16:84489363:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2459:38004:7193	.	NO_LDAS	0.0034	GT	1.8256	AG	1.7968	"[""INTERCHROMOSOMAL[chr2--chr16]""]"	chr2:114000406-chr16:84489363	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC01176--GOLGA8H	1	0	0.09	0.0	INCL_NON_REF_SPLICE	LINC01176^ENSG00000281404.2	chr7:30403885:+	GOLGA8H^ENSG00000261794.1	chr15:30614146:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1232:16929:3032	.	NO_LDAS	0.0003	GT	1.5628	AG	1.8295	"[""INTERCHROMOSOMAL[chr7--chr15]""]"	chr7:30403885-chr15:30614146	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC01138--PLEKHM3	1	0	0.17	0.0	ONLY_REF_SPLICE	LINC01138^ENSG00000274020.4	chr1:148343862:-	PLEKHM3^ENSG00000178385.15	chr2:207908577:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1285:16654:7095	.	NO_LDAS	0.0006	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:148343862-chr2:207908577	False			0	Read count too low: 1 < 8	FAIL	1
LINC01122--C16orf70	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC01122^ENSG00000233723.9	chr2:58461849:+	C16orf70^ENSG00000125149.12	chr16:67144182:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2375:34946:12602	.	NO_LDAS	0.0034	GT	1.6729	AG	1.7819	"[""INTERCHROMOSOMAL[chr2--chr16]""]"	chr2:58461849-chr16:67144182	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC01033--SHTN1	1	0	1.0	0.0	ONLY_REF_SPLICE	LINC01033^ENSG00000249069.8	chr5:54390933:+	SHTN1^ENSG00000187164.20	chr10:116921516:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1221:38885:24274	.	YES_LDAS	0.0034	GT	1.9899	AG	1.7819	"[""INTERCHROMOSOMAL[chr5--chr10]""]"	chr5:54390933-chr10:116921516	False			0	Read count too low: 1 < 8	FAIL	1
LINC01019--RBMS3	1	0	1.0	0.0	ONLY_REF_SPLICE	LINC01019^ENSG00000248118.2	chr5:3531753:-	RBMS3^ENSG00000144642.22	chr3:29868858:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1417:50535:2191	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8295	"[""INTERCHROMOSOMAL[chr5--chr3]""]"	chr5:3531753-chr3:29868858	False			0	Read count too low: 1 < 8	FAIL	1
LINC00888--PSME3	1	0	0.25	0.0	INCL_NON_REF_SPLICE	LINC00888^ENSG00000240024.5	chr3:183447815:+	PSME3^ENSG00000131467.11	chr17:42833488:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1411:41871:27455	.	NO_LDAS	0.0009	GT	0.9056	AG	1.3383	"[""INTERCHROMOSOMAL[chr3--chr17]""]"	chr3:183447815-chr17:42833488	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC00888--DDI2	1	0	0.25	0.0	INCL_NON_REF_SPLICE	LINC00888^ENSG00000240024.5	chr3:183447815:+	DDI2^ENSG00000197312.12	chr1:15617537:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1411:41871:27455	.	NO_LDAS	0.0009	GT	0.9056	AG	1.3383	"[""INTERCHROMOSOMAL[chr3--chr1]""]"	chr3:183447815-chr1:15617537	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC00888--DCUN1D4	1	0	0.25	0.0	INCL_NON_REF_SPLICE	LINC00888^ENSG00000240024.5	chr3:183447815:+	DCUN1D4^ENSG00000109184.15	chr4:51843659:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1411:41871:27455	.	NO_LDAS	0.0009	GT	0.9056	AG	1.3383	"[""INTERCHROMOSOMAL[chr3--chr4]""]"	chr3:183447815-chr4:51843659	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC00703--PCNX2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC00703^ENSG00000224382.2	chr10:4409967:+	PCNX2^ENSG00000135749.19	chr1:233198958:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1297:26079:25662	.	NO_LDAS	0.0034	GT	1.231	AG	1.9329	"[""INTERCHROMOSOMAL[chr10--chr1]""]"	chr10:4409967-chr1:233198958	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC00494--C3	1	0	0.2	0.0	INCL_NON_REF_SPLICE	LINC00494^ENSG00000235621.9	chr20:48359898:+	C3^ENSG00000125730.17	chr19:6719287:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2274:13863:26362	.	NO_LDAS	0.0007	GT	1.6729	AG	1.8295	"[""INTERCHROMOSOMAL[chr20--chr19]""]"	chr20:48359898-chr19:6719287	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LINC00411--MBTPS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LINC00411^ENSG00000229599.2	chr13:100938891:-	MBTPS1^ENSG00000140943.17	chr16:84056135:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2427:23644:22060	.	NO_LDAS	0.0034	GT	1.8062	AG	1.8892	"[""INTERCHROMOSOMAL[chr13--chr16]""]"	chr13:100938891-chr16:84056135	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LIN7C--BRD9	1	0	1.0	0.0	ONLY_REF_SPLICE	LIN7C^ENSG00000148943.12	chr11:27499359:-	BRD9^ENSG00000028310.18	chr5:879889:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1133:51878:1182	.	YES_LDAS	0.0034	GT	1.7819	AG	1.585	"[""INTERCHROMOSOMAL[chr11--chr5]""]"	chr11:27499359-chr5:879889	False			0	Read count too low: 1 < 8	FAIL	1
LIMK2--RPS6KB1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LIMK2^ENSG00000182541.18	chr22:31278386:+	RPS6KB1^ENSG00000108443.14	chr17:59910596:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2203:38513:8244	.	NO_LDAS	0.0034	GT	1.7968	AG	1.9656	"[""INTERCHROMOSOMAL[chr22--chr17]""]"	chr22:31278386-chr17:59910596	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LIMK2--FSCN3	1	0	0.33	0.0	INCL_NON_REF_SPLICE	LIMK2^ENSG00000182541.18	chr22:31278353:+	FSCN3^ENSG00000106328.10	chr7:127601971:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1217:49572:7306	.	NO_LDAS	0.0011	GC	1.8892	AG	1.8295	"[""INTERCHROMOSOMAL[chr22--chr7]""]"	chr22:31278353-chr7:127601971	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LGI3--AC114774.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LGI3^ENSG00000168481.9	chr8:22151831:-	AC114774.1^ENSG00000251501.1	chr4:43587209:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1496:31232:8525	.	NO_LDAS	0.0034	GT	1.9086	AG	1.8323	"[""INTERCHROMOSOMAL[chr8--chr4]""]"	chr8:22151831-chr4:43587209	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LFNG--TTYH3	1	0	1.0	0.0	ONLY_REF_SPLICE	LFNG^ENSG00000106003.13	chr7:2520293:+	TTYH3^ENSG00000136295.15	chr7:2661668:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1229:21168:15643	.	YES_LDAS	0.0034	GT	1.8256	AG	1.8892	"[""INTRACHROMOSOMAL[chr7:0.10Mb]""]"	chr7:2520293-chr7:2661668	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
LEPROTL1--PIBF1	1	0	1.0	0.0	ONLY_REF_SPLICE	LEPROTL1^ENSG00000104660.19	chr8:30104991:+	PIBF1^ENSG00000083535.16	chr13:72792447:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1405:25658:21542	.	NO_LDAS	0.0034	GC	1.8892	AG	1.5656	"[""INTERCHROMOSOMAL[chr8--chr13]""]"	chr8:30104991-chr13:72792447	False			0	Read count too low: 1 < 8	FAIL	1
LDHA--PAIP2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LDHA^ENSG00000134333.14	chr11:18403010:+	PAIP2^ENSG00000120727.13	chr5:139369430:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2294:9770:26474	.	NO_LDAS	0.0034	GT	1.9219	AG	1.9656	"[""INTERCHROMOSOMAL[chr11--chr5]""]"	chr11:18403010-chr5:139369430	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
LAMA3--STAM2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	LAMA3^ENSG00000053747.17	chr18:23751092:+	STAM2^ENSG00000115145.10	chr2:152175692:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1486:30901:21850	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr18--chr2]""]"	chr18:23751092-chr2:152175692	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KY--MGARP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KY^ENSG00000174611.12	chr3:134620749:-	MGARP^ENSG00000137463.5	chr4:139266387:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1404:31815:8609	.	NO_LDAS	0.0034	GT	1.9329	AG	1.8892	"[""INTERCHROMOSOMAL[chr3--chr4]""]"	chr3:134620749-chr4:139266387	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KTN1-AS1--HPGD	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KTN1-AS1^ENSG00000186615.11	chr14:55579198:-	HPGD^ENSG00000164120.14	chr4:174522554:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2459:35747:21360	.	NO_LDAS	0.0034	GT	1.9899	AG	1.2729	"[""INTERCHROMOSOMAL[chr14--chr4]""]"	chr14:55579198-chr4:174522554	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KRT8P28--KRT3	1	0	0.33	0.0	INCL_NON_REF_SPLICE	KRT8P28^ENSG00000223810.2	chr1:151950570:-	KRT3^ENSG00000186442.7	chr12:52795457:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1479:5385:24036	.	YES_LDAS	0.0011	GT	1.9086	AG	1.5301	"[""INTERCHROMOSOMAL[chr1--chr12]""]"	chr1:151950570-chr12:52795457	False			0	Read count too low: 1 < 8	FAIL	1
KRT8P11--INSM2	1	0	0.17	0.0	INCL_NON_REF_SPLICE	KRT8P11^ENSG00000255815.3	chr9:99306539:+	INSM2^ENSG00000168348.4	chr14:35534719:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1187:29897:23111	.	NO_LDAS	0.0006	GT	1.7465	AG	1.3383	"[""INTERCHROMOSOMAL[chr9--chr14]""]"	chr9:99306539-chr14:35534719	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KRT87P--PAIP2B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KRT87P^ENSG00000135477.11	chr12:52258825:-	PAIP2B^ENSG00000124374.9	chr2:71190012:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1192:20262:22621	.	NO_LDAS	0.0034	GT	1.5546	AG	1.7819	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:52258825-chr2:71190012	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KRT6B--KRT78	1	0	0.25	0.0	ONLY_REF_SPLICE	KRT6B^ENSG00000185479.6	chr12:52451539:-	KRT78^ENSG00000170423.13	chr12:52848121:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2226:51805:22271	.	YES_LDAS	0.0009	GT	1.9329	AG	1.7465	"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr12:0.39Mb]""]"	chr12:52451539-chr12:52848121	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
KRT6A--KRT87P	1	0	0.33	0.0	ONLY_REF_SPLICE	KRT6A^ENSG00000205420.11	chr12:52491112:-	KRT87P^ENSG00000135477.11	chr12:52254364:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1424:45487:9365	.	NO_LDAS	0.0011	GT	1.9086	AG	1.8892	"[""INTRACHROMOSOMAL[chr12:0.23Mb]""]"	chr12:52491112-chr12:52254364	False			0	Read count too low: 1 < 8	FAIL	1
KPNA3--F13B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KPNA3^ENSG00000102753.10	chr13:49746949:-	F13B^ENSG00000143278.5	chr1:197039384:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2394:24590:10220	.	NO_LDAS	0.0034	GT	1.7968	AG	1.5546	"[""INTERCHROMOSOMAL[chr13--chr1]""]"	chr13:49746949-chr1:197039384	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KLHL18--VPS13C	1	0	1.0	0.0	ONLY_REF_SPLICE	KLHL18^ENSG00000114648.12	chr3:47283094:+	VPS13C^ENSG00000129003.19	chr15:61978749:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2252:34153:10556	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8295	"[""INTERCHROMOSOMAL[chr3--chr15]""]"	chr3:47283094-chr15:61978749	False			0	Read count too low: 1 < 8	FAIL	1
KLHDC7B--MMP24OS	1	0	0.5	0.0	INCL_NON_REF_SPLICE	KLHDC7B^ENSG00000130487.9	chr22:50547851:+	MMP24OS^ENSG00000126005.17	chr20:35277869:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1164:45091:8342	.	NO_LDAS	0.0017	GT	1.5546	AG	1.4256	"[""INTERCHROMOSOMAL[chr22--chr20]""]"	chr22:50547851-chr20:35277869	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KLF6--IPMK	1	0	1.0	0.0	ONLY_REF_SPLICE	KLF6^ENSG00000067082.15	chr10:3784913:-	IPMK^ENSG00000151151.6	chr10:58237814:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1344:40366:6381	.	YES_LDAS	0.0034	GT	1.9086	AG	1.9329	"[""INTRACHROMOSOMAL[chr10:54.41Mb]""]"	chr10:3784913-chr10:58237814	False			0	Read count too low: 1 < 8	FAIL	1
KIFC3--LINC00266-1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KIFC3^ENSG00000140859.16	chr16:57761164:-	LINC00266-1^ENSG00000149656.8	chr20:64290283:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1244:6121:14690	.	NO_LDAS	0.0034	GT	1.9329	AG	1.6729	"[""INTERCHROMOSOMAL[chr16--chr20]""]"	chr16:57761164-chr20:64290283	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KIFC2--AP005229.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KIFC2^ENSG00000167702.13	chr8:144472484:+	AP005229.1^ENSG00000267051.1	chr18:11367178:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2222:7359:1813	.	NO_LDAS	0.0034	GT	1.9329	AG	1.6895	"[""INTERCHROMOSOMAL[chr8--chr18]""]"	chr8:144472484-chr18:11367178	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KIFBP--PLEKHM3	1	0	0.17	0.0	ONLY_REF_SPLICE	KIFBP^ENSG00000198954.9	chr10:68995278:+	PLEKHM3^ENSG00000178385.15	chr2:207908577:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1285:16654:7095	.	NO_LDAS	0.0006	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr10--chr2]""]"	chr10:68995278-chr2:207908577	False			0	Read count too low: 1 < 8	FAIL	1
KIF7--TRAFD1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	KIF7^ENSG00000166813.16	chr15:89646910:-	TRAFD1^ENSG00000135148.12	chr12:112152838:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1231:47833:5134	.	NO_LDAS	0.0017	GT	1.5628	AG	1.8892	"[""INTERCHROMOSOMAL[chr15--chr12]""]"	chr15:89646910-chr12:112152838	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KIF5B--H3C14	1	0	0.5	0.0	INCL_NON_REF_SPLICE	KIF5B^ENSG00000170759.11	chr10:32034690:-	H3C14^ENSG00000203811.1	chr1:149840420:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1391:33061:6591	.	NO_LDAS	0.0017	GT	1.9086	AG	1.6729	"[""INTERCHROMOSOMAL[chr10--chr1]""]"	chr10:32034690-chr1:149840420	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KIF4A--DBNL	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KIF4A^ENSG00000090889.12	chrX:70420544:+	DBNL^ENSG00000136279.21	chr7:44059354:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1229:10813:1182	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8062	"[""INTERCHROMOSOMAL[chrX--chr7]""]"	chrX:70420544-chr7:44059354	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KIF3C--GTF2I	1	0	0.33	0.0	INCL_NON_REF_SPLICE	KIF3C^ENSG00000084731.15	chr2:25951803:-	GTF2I^ENSG00000263001.7	chr7:74758780:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1186:36847:16203	.	NO_LDAS	0.0011	GT	1.9656	AG	1.5546	"[""INTERCHROMOSOMAL[chr2--chr7]""]"	chr2:25951803-chr7:74758780	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KIF2A--IPO11	1	0	1.0	0.0	ONLY_REF_SPLICE	KIF2A^ENSG00000068796.19	chr5:62306536:+	IPO11^ENSG00000086200.17	chr5:62437274:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2319:22762:5344	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8892	"[""ChimerSeq"",""TCGA_StarF2019"",""CCLE_StarF2019"",""INTRACHROMOSOMAL[chr5:0.01Mb]"",""NEIGHBORS[12947]""]"	chr5:62306536-chr5:62437274	False			0	Read count too low: 1 < 8	FAIL	1
KIF1C--KIF1B	1	0	1.0	0.0	ONLY_REF_SPLICE	KIF1C^ENSG00000129250.12	chr17:5007342:+	KIF1B^ENSG00000054523.18	chr1:10292047:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1121:35415:8735	.	NO_LDAS	0.0034	GT	1.7968	AG	1.8323	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:5007342-chr1:10292047	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
KIF16B--THUMPD3-AS1	1	0	1.0	0.0	ONLY_REF_SPLICE	KIF16B^ENSG00000089177.19	chr20:16494291:-	THUMPD3-AS1^ENSG00000206573.9	chr3:9391826:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1138:26839:27988	.	YES_LDAS	0.0034	GT	1.5329	AG	1.7056	"[""INTERCHROMOSOMAL[chr20--chr3]""]"	chr20:16494291-chr3:9391826	False			0	Read count too low: 1 < 8	FAIL	1
KIF13B--HBE1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KIF13B^ENSG00000197892.13	chr8:29190997:-	HBE1^ENSG00000213931.7	chr11:5269588:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1108:17164:6577	.	NO_LDAS	0.0034	GT	1.6402	AG	1.9086	"[""INTERCHROMOSOMAL[chr8--chr11]""]"	chr8:29190997-chr11:5269588	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KIAA0753--PITPNM3	1	0	1.0	0.0	ONLY_REF_SPLICE	KIAA0753^ENSG00000198920.11	chr17:6589779:-	PITPNM3^ENSG00000091622.16	chr17:6538082:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1158:11323:12826	.	NO_LDAS	0.0034	GT	1.9086	AG	1.5058	"[""Babiceanu_Normal"",""INTRACHROMOSOMAL[chr17:0.02Mb]"",""NEIGHBORS[21592]""]"	chr17:6589779-chr17:6538082	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
KDSR--FAM107B	1	0	1.0	0.0	ONLY_REF_SPLICE	KDSR^ENSG00000119537.18	chr18:63344410:-	FAM107B^ENSG00000065809.14	chr10:14530515:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2208:46959:24022	.	YES_LDAS	0.0034	GT	1.2419	AG	1.8062	"[""INTERCHROMOSOMAL[chr18--chr10]""]"	chr18:63344410-chr10:14530515	False			0	Read count too low: 1 < 8	FAIL	1
KDM5B--DLG2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KDM5B^ENSG00000117139.18	chr1:202750655:-	DLG2^ENSG00000150672.18	chr11:83532724:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2117:45811:5442	.	NO_LDAS	0.0034	GT	1.6895	AG	1.8256	"[""INTERCHROMOSOMAL[chr1--chr11]""]"	chr1:202750655-chr11:83532724	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KDM5A--LDB2	1	0	1.0	0.0	ONLY_REF_SPLICE	KDM5A^ENSG00000073614.13	chr12:350621:-	LDB2^ENSG00000169744.13	chr4:16759260:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1115:10012:18291	.	YES_LDAS	0.0034	GT	1.7819	AG	1.9656	"[""INTERCHROMOSOMAL[chr12--chr4]""]"	chr12:350621-chr4:16759260	False			0	Read count too low: 1 < 8	FAIL	1
KDM3A--GPR21	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KDM3A^ENSG00000115548.17	chr2:86480245:+	GPR21^ENSG00000188394.8	chr9:123034525:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1109:45932:23083	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8256	"[""INTERCHROMOSOMAL[chr2--chr9]""]"	chr2:86480245-chr9:123034525	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KCTD8--C5orf24	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KCTD8^ENSG00000183783.7	chr4:44447924:-	C5orf24^ENSG00000181904.9	chr5:134846259:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1166:25812:11243	.	NO_LDAS	0.0034	GC	0.9183	AG	1.4566	"[""INTERCHROMOSOMAL[chr4--chr5]""]"	chr4:44447924-chr5:134846259	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KCTD20--CDK10	1	0	1.0	0.0	ONLY_REF_SPLICE	KCTD20^ENSG00000112078.14	chr6:36443111:+	CDK10^ENSG00000185324.22	chr16:89690553:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1143:38060:28814	.	NO_LDAS	0.0034	GT	1.371	AG	1.7819	"[""INTERCHROMOSOMAL[chr6--chr16]""]"	chr6:36443111-chr16:89690553	False			0	Read count too low: 1 < 8	FAIL	1
KCNQ4--MVP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KCNQ4^ENSG00000117013.17	chr1:40783791:+	MVP^ENSG00000013364.19	chr16:29836722:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2441:17593:18417	.	NO_LDAS	0.0034	GT	1.5546	AG	1.7232	"[""INTERCHROMOSOMAL[chr1--chr16]""]"	chr1:40783791-chr16:29836722	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KCNJ4--C11orf98	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KCNJ4^ENSG00000168135.4	chr22:38427582:-	C11orf98^ENSG00000278615.5	chr11:62663327:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:41782:18333	.	NO_LDAS	0.0034	GT	1.5301	AG	1.9656	"[""INTERCHROMOSOMAL[chr22--chr11]""]"	chr22:38427582-chr11:62663327	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KCNIP1--GLG1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KCNIP1^ENSG00000182132.14	chr5:170718789:+	GLG1^ENSG00000090863.12	chr16:74467842:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1332:43788:27133	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""INTERCHROMOSOMAL[chr5--chr16]""]"	chr5:170718789-chr16:74467842	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KCNH8--OXSR1	1	0	1.0	0.0	ONLY_REF_SPLICE	KCNH8^ENSG00000183960.9	chr3:19347965:+	OXSR1^ENSG00000172939.9	chr3:38183003:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1357:16776:17282	.	YES_LDAS	0.0034	GT	1.3753	AG	1.7968	"[""INTRACHROMOSOMAL[chr3:18.63Mb]""]"	chr3:19347965-chr3:38183003	False			0	Read count too low: 1 < 8	FAIL	1
KCNE1--SPPL2B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	KCNE1^ENSG00000180509.12	chr21:34449588:-	SPPL2B^ENSG00000005206.17	chr19:2344364:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1456:14866:12014	.	NO_LDAS	0.0017	GT	1.9086	AG	1.9656	"[""INTERCHROMOSOMAL[chr21--chr19]""]"	chr21:34449588-chr19:2344364	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KCNB1--LRP6	1	0	0.33	0.0	INCL_NON_REF_SPLICE	KCNB1^ENSG00000158445.10	chr20:49295736:-	LRP6^ENSG00000070018.9	chr12:12203359:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1142:19332:29333	.	NO_LDAS	0.0011	GT	1.7056	AG	1.8892	"[""INTERCHROMOSOMAL[chr20--chr12]""]"	chr20:49295736-chr12:12203359	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KBTBD7--NELFB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KBTBD7^ENSG00000120696.9	chr13:41194459:-	NELFB^ENSG00000188986.9	chr9:137255322:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2444:1340:2794	.	NO_LDAS	0.0034	GT	1.3996	AG	1.5546	"[""INTERCHROMOSOMAL[chr13--chr9]""]"	chr13:41194459-chr9:137255322	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KAZN--PRKAR1B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	KAZN^ENSG00000189337.17	chr1:14924541:+	PRKAR1B^ENSG00000188191.15	chr7:726922:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2390:43440:26783	.	NO_LDAS	0.0017	GT	1.4295	AG	1.2419	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:14924541-chr7:726922	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KAT14--RAD51AP2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KAT14^ENSG00000149474.14	chr20:18162513:+	RAD51AP2^ENSG00000214842.5	chr2:17515906:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2481:19049:25171	.	NO_LDAS	0.0034	GT	1.6895	AG	1.9219	"[""INTERCHROMOSOMAL[chr20--chr2]""]"	chr20:18162513-chr2:17515906	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
KAT14--PLCB4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	KAT14^ENSG00000149474.14	chr20:18137976:+	PLCB4^ENSG00000101333.18	chr20:9401490:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1187:10991:9982	.	NO_LDAS	0.0034	GT	1.7968	AG	1.7819	"[""INTRACHROMOSOMAL[chr20:8.66Mb]""]"	chr20:18137976-chr20:9401490	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
JAZF1--NFE2L3	1	0	1.0	0.0	ONLY_REF_SPLICE	JAZF1^ENSG00000153814.13	chr7:28180463:-	NFE2L3^ENSG00000050344.9	chr7:26177943:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1295:30520:14326	.	YES_LDAS	0.0034	GT	1.7819	AG	1.7819	"[""INTRACHROMOSOMAL[chr7:1.64Mb]""]"	chr7:28180463-chr7:26177943	False			0	Read count too low: 1 < 8	FAIL	1
IYD--TAF12	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IYD^ENSG00000009765.15	chr6:150369076:+	TAF12^ENSG00000120656.12	chr1:28605460:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1124:26961:9646	.	NO_LDAS	0.0034	GT	1.7232	AG	1.8256	"[""INTERCHROMOSOMAL[chr6--chr1]""]"	chr6:150369076-chr1:28605460	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IWS1--HS6ST1	1	0	1.0	0.0	ONLY_REF_SPLICE	IWS1^ENSG00000163166.15	chr2:127526636:-	HS6ST1^ENSG00000136720.7	chr2:128268870:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1168:17447:22929	.	NO_LDAS	0.0034	GT	1.8256	AG	1.9086	"[""INTRACHROMOSOMAL[chr2:0.71Mb]""]"	chr2:127526636-chr2:128268870	False			0	Read count too low: 1 < 8	FAIL	1
IVD--NOC2L	1	0	0.2	0.0	INCL_NON_REF_SPLICE	IVD^ENSG00000128928.10	chr15:40416103:+	NOC2L^ENSG00000188976.11	chr1:945599:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1276:2764:9716	.	NO_LDAS	0.0007	GT	1.9086	AG	1.5628	"[""INTERCHROMOSOMAL[chr15--chr1]""]"	chr15:40416103-chr1:945599	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ITSN2--AC009065.5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ITSN2^ENSG00000198399.15	chr2:24299909:-	AC009065.5^ENSG00000261123.1	chr16:2094967:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2420:45527:11902	.	NO_LDAS	0.0034	GT	1.5329	AG	1.371	"[""INTERCHROMOSOMAL[chr2--chr16]""]"	chr2:24299909-chr16:2094967	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ITPKC--AC104758.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ITPKC^ENSG00000086544.3	chr19:40737769:+	AC104758.2^ENSG00000260776.6	chr15:77915902:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1287:48165:24877	.	NO_LDAS	0.0034	GT	1.9086	AG	1.6895	"[""INTERCHROMOSOMAL[chr19--chr15]""]"	chr19:40737769-chr15:77915902	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
ITPKB--SIPA1L2	1	0	1.0	0.0	ONLY_REF_SPLICE	ITPKB^ENSG00000143772.9	chr1:226735527:-	SIPA1L2^ENSG00000116991.11	chr1:232574222:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1209:47364:25676	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8256	"[""INTRACHROMOSOMAL[chr1:5.66Mb]""]"	chr1:226735527-chr1:232574222	False			0	Read count too low: 1 < 8	FAIL	1
ITPKB--IFT172	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ITPKB^ENSG00000143772.9	chr1:226737374:-	IFT172^ENSG00000138002.16	chr2:27445340:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1446:22697:4307	.	NO_LDAS	0.0034	GT	1.2867	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:226737374-chr2:27445340	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ITPK1--COX4I1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ITPK1^ENSG00000100605.17	chr14:93115855:-	COX4I1^ENSG00000131143.10	chr16:85801205:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1284:31596:17927	.	NO_LDAS	0.0017	GT	1.2419	AG	1.9899	"[""INTERCHROMOSOMAL[chr14--chr16]""]"	chr14:93115855-chr16:85801205	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ITGB5--PHBP13	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ITGB5^ENSG00000082781.12	chr3:124773749:-	PHBP13^ENSG00000234835.1	chr13:35251615:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1432:7601:8511	.	NO_LDAS	0.0034	GC	1.6402	AG	1.9086	"[""INTERCHROMOSOMAL[chr3--chr13]""]"	chr3:124773749-chr13:35251615	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ITGA9--FAM118B	1	0	1.0	0.0	ONLY_REF_SPLICE	ITGA9^ENSG00000144668.12	chr3:37542585:+	FAM118B^ENSG00000197798.9	chr11:126250506:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1121:14397:13555	.	YES_LDAS	0.0034	GT	1.9219	AG	1.9656	"[""INTERCHROMOSOMAL[chr3--chr11]""]"	chr3:37542585-chr11:126250506	False			0	Read count too low: 1 < 8	FAIL	1
ITGA5--REV1	1	0	1.0	0.0	ONLY_REF_SPLICE	ITGA5^ENSG00000161638.11	chr12:54418981:-	REV1^ENSG00000135945.10	chr2:99464985:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2131:35900:1981	.	YES_LDAS	0.0034	GT	1.5301	AG	1.9086	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:54418981-chr2:99464985	False			0	Read count too low: 1 < 8	FAIL	1
ITGA4--WIPF1	1	0	1.0	0.0	ONLY_REF_SPLICE	ITGA4^ENSG00000115232.14	chr2:181457851:+	WIPF1^ENSG00000115935.18	chr2:174585611:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1343:38384:20463	.	YES_LDAS	0.0034	GT	1.7465	AG	1.8892	"[""INTRACHROMOSOMAL[chr2:6.77Mb]""]"	chr2:181457851-chr2:174585611	False			0	Read count too low: 1 < 8	FAIL	1
ITFG2--LRRFIP1	1	0	1.0	0.0	ONLY_REF_SPLICE	ITFG2^ENSG00000111203.13	chr12:2836956:+	LRRFIP1^ENSG00000124831.19	chr2:237779422:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2325:39258:19987	.	YES_LDAS	0.0034	GT	1.9329	AG	1.7819	"[""INTERCHROMOSOMAL[chr12--chr2]""]"	chr12:2836956-chr2:237779422	False			0	Read count too low: 1 < 8	FAIL	1
ISY1--SCART1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ISY1^ENSG00000240682.10	chr3:129161032:-	SCART1^ENSG00000214279.13	chr10:133467198:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1123:26475:19594	.	NO_LDAS	0.0034	GT	1.585	AG	1.9219	"[""INTERCHROMOSOMAL[chr3--chr10]""]"	chr3:129161032-chr10:133467198	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IST1--SF3B3	1	0	1.0	0.0	ONLY_REF_SPLICE	IST1^ENSG00000182149.21	chr16:71923380:+	SF3B3^ENSG00000189091.13	chr16:70571095:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1483:49856:13485	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9086	"[""INTRACHROMOSOMAL[chr16:1.27Mb]""]"	chr16:71923380-chr16:70571095	False			0	Read count too low: 1 < 8	FAIL	1
IST1--AC016949.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IST1^ENSG00000182149.21	chr16:71922684:+	AC016949.1^ENSG00000230732.4	chr3:196913007:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:26249:2331	.	NO_LDAS	0.0034	GT	1.7465	AG	1.6895	"[""INTERCHROMOSOMAL[chr16--chr3]""]"	chr16:71922684-chr3:196913007	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ISOC2--FECH	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ISOC2^ENSG00000063241.8	chr19:55453026:-	FECH^ENSG00000066926.12	chr18:57573365:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1266:9939:6983	.	NO_LDAS	0.0017	GT	1.9656	AG	1.7819	"[""INTERCHROMOSOMAL[chr19--chr18]""]"	chr19:55453026-chr18:57573365	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IRGQ--PRKAR1B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IRGQ^ENSG00000167378.8	chr19:43592632:-	PRKAR1B^ENSG00000188191.15	chr7:726922:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1151:50333:18571	.	NO_LDAS	0.0034	GT	1.6402	AG	1.2419	"[""INTERCHROMOSOMAL[chr19--chr7]""]"	chr19:43592632-chr7:726922	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IPO9--VAMP8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IPO9^ENSG00000198700.10	chr1:201878990:+	VAMP8^ENSG00000118640.11	chr2:85579012:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2242:14510:17563	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:201878990-chr2:85579012	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IPO5--ZAN	1	0	0.5	0.0	INCL_NON_REF_SPLICE	IPO5^ENSG00000065150.21	chr13:97976786:+	ZAN^ENSG00000146839.19	chr7:100736873:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1121:18709:23994	.	NO_LDAS	0.0017	GT	1.5219	AG	1.8892	"[""INTERCHROMOSOMAL[chr13--chr7]""]"	chr13:97976786-chr7:100736873	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IPO5--SLC6A10P	1	0	0.5	0.0	INCL_NON_REF_SPLICE	IPO5^ENSG00000065150.21	chr13:97976786:+	SLC6A10P^ENSG00000214617.9	chr16:32881420:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1121:18709:23994	.	NO_LDAS	0.0017	GT	1.5219	AG	1.3753	"[""INTERCHROMOSOMAL[chr13--chr16]""]"	chr13:97976786-chr16:32881420	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IPO5--AL357874.3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IPO5^ENSG00000065150.21	chr13:97976786:+	AL357874.3^ENSG00000288586.1	chr9:35604741:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1105:13014:22705	.	NO_LDAS	0.0034	GT	1.5219	AG	1.3753	"[""INTERCHROMOSOMAL[chr13--chr9]""]"	chr13:97976786-chr9:35604741	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
INSR--TBC1D5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	INSR^ENSG00000171105.14	chr19:7184361:-	TBC1D5^ENSG00000131374.14	chr3:17740703:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1331:2715:27455	.	NO_LDAS	0.0034	GT	1.3996	AG	1.8295	"[""INTERCHROMOSOMAL[chr19--chr3]""]"	chr19:7184361-chr3:17740703	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
INPP4A--GTF2F1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	INPP4A^ENSG00000040933.16	chr2:98554493:+	GTF2F1^ENSG00000125651.14	chr19:6383495:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1158:9664:11411	.	NO_LDAS	0.0034	GT	1.3383	AG	1.8323	"[""INTERCHROMOSOMAL[chr2--chr19]""]"	chr2:98554493-chr19:6383495	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
INO80--AC025470.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	INO80^ENSG00000128908.17	chr15:40985338:-	AC025470.2^ENSG00000250961.2	chr5:57395120:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1144:18919:28086	.	NO_LDAS	0.0034	GT	1.6895	AG	1.5546	"[""INTERCHROMOSOMAL[chr15--chr5]""]"	chr15:40985338-chr5:57395120	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
INMT--MINDY4	1	0	1.0	0.0	ONLY_REF_SPLICE	INMT^ENSG00000241644.2	chr7:30753938:+	MINDY4^ENSG00000106125.14	chr7:30778432:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2477:39508:2738	.	NO_LDAS	0.0034	GT	1.7056	AG	1.7968	"[""INTRACHROMOSOMAL[chr7:0.01Mb]"",""NEIGHBORS[13815]""]"	chr7:30753938-chr7:30778432	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
INAFM2--NTN1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	INAFM2^ENSG00000259330.3	chr15:40323859:+	NTN1^ENSG00000065320.9	chr17:9022395:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2152:40414:26026	.	NO_LDAS	0.0034	GT	1.231	AG	1.3996	"[""INTERCHROMOSOMAL[chr15--chr17]""]"	chr15:40323859-chr17:9022395	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IL34--AC020763.4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IL34^ENSG00000157368.11	chr16:70660145:+	AC020763.4^ENSG00000279569.1	chr16:70662091:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1263:36337:1841	.	YES_LDAS	0.0034	GT	1.7968	AG	1.5656	"[""INTRACHROMOSOMAL[chr16:0.00Mb]"",""NEIGHBORS[985]""]"	chr16:70660145-chr16:70662091	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
IL2RB--RTL8C	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IL2RB^ENSG00000100385.14	chr22:37126768:-	RTL8C^ENSG00000134590.14	chrX:135032950:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1201:25141:6997	.	NO_LDAS	0.0034	GT	1.2366	AG	1.2419	"[""INTERCHROMOSOMAL[chr22--chrX]""]"	chr22:37126768-chrX:135032950	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IL17RA--SREBF2	1	0	0.14	0.0	INCL_NON_REF_SPLICE	IL17RA^ENSG00000177663.14	chr22:17108611:+	SREBF2^ENSG00000198911.12	chr22:41833304:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2153:46814:11691	.	NO_LDAS	0.0005	GT	1.231	AG	1.8892	"[""INTRACHROMOSOMAL[chr22:24.72Mb]""]"	chr22:17108611-chr22:41833304	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IKBKE--JMJD7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IKBKE^ENSG00000263528.8	chr1:206476810:+	JMJD7^ENSG00000243789.11	chr15:41836475:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2465:45107:18712	.	NO_LDAS	0.0034	GT	1.5628	AG	1.9086	"[""INTERCHROMOSOMAL[chr1--chr15]""]"	chr1:206476810-chr15:41836475	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IGDCC4--LRP5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IGDCC4^ENSG00000103742.12	chr15:65396907:-	LRP5^ENSG00000162337.12	chr11:68425172:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:40957:9001	.	YES_LDAS	0.0034	GT	1.6402	AG	1.8062	"[""INTERCHROMOSOMAL[chr15--chr11]""]"	chr15:65396907-chr11:68425172	False			0	Read count too low: 1 < 8	FAIL	1
IFT80--THBS3	1	0	1.0	0.0	ONLY_REF_SPLICE	IFT80^ENSG00000068885.15	chr3:160391546:-	THBS3^ENSG00000169231.13	chr1:155206406:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2188:42089:25816	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9656	"[""INTERCHROMOSOMAL[chr3--chr1]""]"	chr3:160391546-chr1:155206406	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
IFT172--INTS8	1	0	1.0	0.0	ONLY_REF_SPLICE	IFT172^ENSG00000138002.16	chr2:27447515:-	INTS8^ENSG00000164941.14	chr8:94859511:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1205:4721:10612	.	NO_LDAS	0.0034	GT	1.9656	AG	1.6895	"[""INTERCHROMOSOMAL[chr2--chr8]""]"	chr2:27447515-chr8:94859511	False			0	Read count too low: 1 < 8	FAIL	1
IFT122--AL133375.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IFT122^ENSG00000163913.12	chr3:129514072:+	AL133375.1^ENSG00000245261.1	chr6:43223135:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2413:37025:26124	.	NO_LDAS	0.0034	GT	1.6402	AG	1.5329	"[""INTERCHROMOSOMAL[chr3--chr6]""]"	chr3:129514072-chr6:43223135	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
IER2--SRP14	1	0	1.0	0.0	INCL_NON_REF_SPLICE	IER2^ENSG00000160888.7	chr19:13152229:+	SRP14^ENSG00000140319.11	chr15:40036421:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2140:45091:28800	.	NO_LDAS	0.0034	GT	1.6895	AG	1.585	"[""INTERCHROMOSOMAL[chr19--chr15]""]"	chr19:13152229-chr15:40036421	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HYOU1--LINC02782	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HYOU1^ENSG00000149428.19	chr11:119049018:-	LINC02782^ENSG00000231510.1	chr1:5090623:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1140:10538:20575	.	NO_LDAS	0.0034	GT	1.9329	AG	1.5329	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:119049018-chr1:5090623	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HYI--GOLGA8VP	1	0	0.33	0.0	INCL_NON_REF_SPLICE	HYI^ENSG00000178922.18	chr1:43452899:-	GOLGA8VP^ENSG00000259236.1	chr15:101774893:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1447:25925:2443	.	NO_LDAS	0.0011	GT	1.9329	AG	1.7232	"[""INTERCHROMOSOMAL[chr1--chr15]""]"	chr1:43452899-chr15:101774893	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HSPA7--HSPA8P4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HSPA7^ENSG00000225217.1	chr1:161607629:+	HSPA8P4^ENSG00000248610.1	chr5:130141361:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1189:7035:7474	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9329	"[""INTERCHROMOSOMAL[chr1--chr5]""]"	chr1:161607629-chr5:130141361	False			0	Read count too low: 1 < 8	FAIL	1
HSF4--DPP9	1	0	1.0	0.0	ONLY_REF_SPLICE	HSF4^ENSG00000102878.17	chr16:67169348:+	DPP9^ENSG00000142002.18	chr19:4705970:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1216:42340:27876	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr16--chr19]""]"	chr16:67169348-chr19:4705970	False			0	Read count too low: 1 < 8	FAIL	1
HSD52--TCEA1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	HSD52^ENSG00000224609.8	chr1:59146866:-	TCEA1^ENSG00000187735.14	chr8:54022301:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2265:10676:26979	.	NO_LDAS	0.0017	GT	1.053	AG	0.9183	"[""INTERCHROMOSOMAL[chr1--chr8]""]"	chr1:59146866-chr8:54022301	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HSD17B12--EXT2	1	0	1.0	0.0	ONLY_REF_SPLICE	HSD17B12^ENSG00000149084.13	chr11:43840064:+	EXT2^ENSG00000151348.15	chr11:44171611:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1235:26395:23854	.	YES_LDAS	0.0034	GT	1.7819	AG	1.5301	"[""INTRACHROMOSOMAL[chr11:0.24Mb]""]"	chr11:43840064-chr11:44171611	False			0	Read count too low: 1 < 8	FAIL	1
HRAS--TMEM132D	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HRAS^ENSG00000174775.17	chr11:535286:-	TMEM132D^ENSG00000151952.16	chr12:129081995:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1272:39266:21234	.	NO_LDAS	0.0034	GT	1.053	AG	1.231	"[""INTERCHROMOSOMAL[chr11--chr12]""]"	chr11:535286-chr12:129081995	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HOXA11-AS--LTN1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	HOXA11-AS^ENSG00000240990.10	chr7:27184620:+	LTN1^ENSG00000198862.14	chr21:28960832:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2359:35933:10893	.	NO_LDAS	0.0017	GT	1.2867	AG	0.8366	"[""INTERCHROMOSOMAL[chr7--chr21]""]"	chr7:27184620-chr21:28960832	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HOXA10--NEK6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HOXA10^ENSG00000253293.5	chr7:27174141:-	NEK6^ENSG00000119408.17	chr9:124257949:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2196:23167:18319	.	NO_LDAS	0.0034	GT	1.1589	AG	1.1589	"[""INTERCHROMOSOMAL[chr7--chr9]""]"	chr7:27174141-chr9:124257949	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HOXA10--ABHD17B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	HOXA10^ENSG00000253293.5	chr7:27174141:-	ABHD17B^ENSG00000107362.14	chr9:71911010:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2403:16598:11397	.	NO_LDAS	0.0017	GT	1.1589	AG	1.1589	"[""INTERCHROMOSOMAL[chr7--chr9]""]"	chr7:27174141-chr9:71911010	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HNRNPM--ARRDC3-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HNRNPM^ENSG00000099783.12	chr19:8471427:+	ARRDC3-AS1^ENSG00000281357.3	chr5:91611842:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1374:49985:3648	.	NO_LDAS	0.0034	GT	1.9329	AG	1.4295	"[""INTERCHROMOSOMAL[chr19--chr5]""]"	chr19:8471427-chr5:91611842	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HNRNPK--OR4Q3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HNRNPK^ENSG00000165119.21	chr9:83971686:-	OR4Q3^ENSG00000182652.4	chr14:19747780:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1493:33174:6395	.	NO_LDAS	0.0034	GT	1.8062	AG	1.9899	"[""INTERCHROMOSOMAL[chr9--chr14]""]"	chr9:83971686-chr14:19747780	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
HNRNPF--RCOR1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HNRNPF^ENSG00000169813.16	chr10:43387146:-	RCOR1^ENSG00000089902.10	chr14:102593266:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2405:26872:14284	.	NO_LDAS	0.0034	GT	1.9086	AG	1.7232	"[""INTERCHROMOSOMAL[chr10--chr14]""]"	chr10:43387146-chr14:102593266	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HNRNPA3--PLCD4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HNRNPA3^ENSG00000170144.21	chr2:177222657:+	PLCD4^ENSG00000115556.14	chr2:218629022:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1311:8378:22495	.	NO_LDAS	0.0034	GT	1.053	AG	1.9656	"[""INTRACHROMOSOMAL[chr2:41.38Mb]""]"	chr2:177222657-chr2:218629022	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HMGXB4--NUCKS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HMGXB4^ENSG00000100281.14	chr22:35283991:+	NUCKS1^ENSG00000069275.13	chr1:205729621:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1338:7610:11299	.	NO_LDAS	0.0034	GT	1.9656	AG	1.5656	"[""INTERCHROMOSOMAL[chr22--chr1]""]"	chr22:35283991-chr1:205729621	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HMGN1--BATF3	1	0	1.0	0.0	ONLY_REF_SPLICE	HMGN1^ENSG00000205581.11	chr21:39348292:-	BATF3^ENSG00000123685.9	chr1:212697065:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1119:6218:14634	.	YES_LDAS	0.0034	GT	1.5219	AG	1.9656	"[""INTERCHROMOSOMAL[chr21--chr1]""]"	chr21:39348292-chr1:212697065	False			0	Read count too low: 1 < 8	FAIL	1
HMG20B--STK24P1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HMG20B^ENSG00000064961.19	chr19:3575660:+	STK24P1^ENSG00000230079.1	chrX:136296077:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1366:37284:1659	.	NO_LDAS	0.0034	GT	1.4716	AG	1.9329	"[""INTERCHROMOSOMAL[chr19--chrX]""]"	chr19:3575660-chrX:136296077	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HLF--HSP90AB3P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HLF^ENSG00000108924.14	chr17:55265062:+	HSP90AB3P^ENSG00000183199.6	chr4:87892536:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1366:26306:2822	.	NO_LDAS	0.0034	GT	0.9056	AG	1.2729	"[""INTERCHROMOSOMAL[chr17--chr4]""]"	chr17:55265062-chr4:87892536	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HLA-A--SECTM1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HLA-A^ENSG00000206503.13	chr6:29945095:+	SECTM1^ENSG00000141574.8	chr17:82329322:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1284:51603:15447	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9219	"[""INTERCHROMOSOMAL[chr6--chr17]""]"	chr6:29945095-chr17:82329322	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HLA-A--CCNL2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HLA-A^ENSG00000206503.13	chr6:29943543:+	CCNL2^ENSG00000221978.12	chr1:1398299:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1188:20505:26460	.	NO_LDAS	0.0034	GT	1.7056	AG	1.5656	"[""INTERCHROMOSOMAL[chr6--chr1]""]"	chr6:29943543-chr1:1398299	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HIP1R--PLEKHA8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HIP1R^ENSG00000130787.14	chr12:122859536:+	PLEKHA8^ENSG00000106086.20	chr7:30118043:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1254:52088:10374	.	NO_LDAS	0.0034	GT	1.6729	AG	1.9329	"[""INTERCHROMOSOMAL[chr12--chr7]""]"	chr12:122859536-chr7:30118043	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HIKESHI--PICALM	1	0	1.0	0.0	ONLY_REF_SPLICE	HIKESHI^ENSG00000149196.16	chr11:86306482:+	PICALM^ENSG00000073921.18	chr11:85959060:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1197:14980:15769	.	YES_LDAS	0.0034	GT	1.9656	AG	1.7056	"[""DEEPEST2019"",""INTRACHROMOSOMAL[chr11:0.23Mb]""]"	chr11:86306482-chr11:85959060	False			0	Read count too low: 1 < 8	FAIL	1
HEXD-IT1--AP000911.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HEXD-IT1^ENSG00000279066.1	chr17:82426087:+	AP000911.1^ENSG00000254648.1	chr11:134037024:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1163:40892:18221	.	NO_LDAS	0.0034	GT	1.2729	AG	1.053	"[""INTERCHROMOSOMAL[chr17--chr11]""]"	chr17:82426087-chr11:134037024	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HENMT1--TMEM80	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HENMT1^ENSG00000162639.16	chr1:108661041:-	TMEM80^ENSG00000177042.15	chr11:698873:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1213:37737:10066	.	NO_LDAS	0.0034	GT	1.9329	AG	1.9656	"[""INTERCHROMOSOMAL[chr1--chr11]""]"	chr1:108661041-chr11:698873	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HELZ--LRRFIP1	1	0	1.0	0.0	ONLY_REF_SPLICE	HELZ^ENSG00000198265.12	chr17:67107169:-	LRRFIP1^ENSG00000124831.19	chr2:237813592:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1266:20796:3396	.	YES_LDAS	0.0034	GT	1.9656	AG	1.5329	"[""INTERCHROMOSOMAL[chr17--chr2]""]"	chr17:67107169-chr2:237813592	False			0	Read count too low: 1 < 8	FAIL	1
HECW1--DDX19A	1	0	0.5	0.0	INCL_NON_REF_SPLICE	HECW1^ENSG00000002746.15	chr7:43484193:+	DDX19A^ENSG00000168872.17	chr16:70371372:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2405:35795:1659	.	NO_LDAS	0.0017	GT	1.9329	AG	1.9329	"[""INTERCHROMOSOMAL[chr7--chr16]""]"	chr7:43484193-chr16:70371372	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HEATR3--SYNE3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HEATR3^ENSG00000155393.13	chr16:50066468:+	SYNE3^ENSG00000176438.12	chr14:95411010:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1406:25173:25325	.	NO_LDAS	0.0034	GT	1.5219	AG	1.5546	"[""INTERCHROMOSOMAL[chr16--chr14]""]"	chr16:50066468-chr14:95411010	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HDGF--SIAH1	1	0	1.0	0.0	ONLY_REF_SPLICE	HDGF^ENSG00000143321.19	chr1:156751343:-	SIAH1^ENSG00000196470.12	chr16:48362430:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2260:29590:29669	.	YES_LDAS	0.0034	GT	1.5628	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr16]""]"	chr1:156751343-chr16:48362430	False			0	Read count too low: 1 < 8	FAIL	1
HCFC2--CUL1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	HCFC2^ENSG00000111727.12	chr12:104102165:+	CUL1^ENSG00000055130.17	chr7:148698583:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1169:15700:3760	.	NO_LDAS	0.0011	GT	1.8323	AG	0.9968	"[""INTERCHROMOSOMAL[chr12--chr7]""]"	chr12:104102165-chr7:148698583	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HAUS1--TXNDC12	1	0	1.0	0.0	ONLY_REF_SPLICE	HAUS1^ENSG00000152240.13	chr18:46105368:+	TXNDC12^ENSG00000117862.13	chr1:52021012:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1151:35067:3396	.	NO_LDAS	0.0034	GT	1.7968	AG	1.7819	"[""INTERCHROMOSOMAL[chr18--chr1]""]"	chr18:46105368-chr1:52021012	False			0	Read count too low: 1 < 8	FAIL	1
HARS1--AL603783.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	HARS1^ENSG00000170445.16	chr5:140690855:-	AL603783.1^ENSG00000287823.1	chr6:170093548:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1141:51563:20057	.	NO_LDAS	0.0034	GT	1.5628	AG	1.9329	"[""INTERCHROMOSOMAL[chr5--chr6]""]"	chr5:140690855-chr6:170093548	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
HACE1--MBOAT1	1	0	1.0	0.0	ONLY_REF_SPLICE	HACE1^ENSG00000085382.12	chr6:104771193:-	MBOAT1^ENSG00000172197.11	chr6:20152769:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1187:21735:1518	.	YES_LDAS	0.0034	GT	1.1033	AG	1.5058	"[""INTRACHROMOSOMAL[chr6:84.52Mb]""]"	chr6:104771193-chr6:20152769	False			0	Read count too low: 1 < 8	FAIL	1
HABP4--AP001172.1	1	0	1.0	0.0	ONLY_REF_SPLICE	HABP4^ENSG00000130956.14	chr9:96458541:+	AP001172.1^ENSG00000270071.3	chr21:16296700:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1266:11760:21290	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8295	"[""INTERCHROMOSOMAL[chr9--chr21]""]"	chr9:96458541-chr21:16296700	False			0	Read count too low: 1 < 8	FAIL	1
H6PD--ARHGAP4	1	0	1.0	0.0	ONLY_REF_SPLICE	H6PD^ENSG00000049239.13	chr1:9245561:+	ARHGAP4^ENSG00000089820.16	chrX:153907962:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1140:31645:2093	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9329	"[""INTERCHROMOSOMAL[chr1--chrX]""]"	chr1:9245561-chrX:153907962	False			0	Read count too low: 1 < 8	FAIL	1
H2BC5--CCNB3	1	0	1.0	0.0	ONLY_REF_SPLICE	H2BC5^ENSG00000158373.8	chr6:26158559:+	CCNB3^ENSG00000147082.18	chrX:50285127:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2325:15570:10991	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9219	"[""INTERCHROMOSOMAL[chr6--chrX]""]"	chr6:26158559-chrX:50285127	False			0	Read count too low: 1 < 8	FAIL	1
H2AZP1--AL109766.1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	H2AZP1^ENSG00000213440.2	chr21:44046434:-	AL109766.1^ENSG00000259137.1	chr14:44120506:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:4179:21780	.	NO_LDAS	0.0011	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chr21--chr14]""]"	chr21:44046434-chr14:44120506	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GUSBP13--NAIP	1	0	0.11	0.0	ONLY_REF_SPLICE	GUSBP13^ENSG00000198237.8	chr5:69920867:+	NAIP^ENSG00000249437.8	chr5:71003857:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2184:7383:9674	.	YES_LDAS	0.0004	GT	1.9329	AG	1.8295	"[""INTRACHROMOSOMAL[chr5:1.05Mb]""]"	chr5:69920867-chr5:71003857	False			0	Read count too low: 1 < 8	FAIL	1
GUSBP1--PDZD2	1	0	1.0	0.0	ONLY_REF_SPLICE	GUSBP1^ENSG00000183666.17	chr5:21461866:+	PDZD2^ENSG00000133401.16	chr5:32048539:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1329:23709:14578	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8323	"[""INTRACHROMOSOMAL[chr5:10.05Mb]""]"	chr5:21461866-chr5:32048539	False			0	Read count too low: 1 < 8	FAIL	1
GUCY1A1--GPBP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GUCY1A1^ENSG00000164116.17	chr4:155733644:+	GPBP1^ENSG00000062194.16	chr5:57246300:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2176:4964:24204	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8256	"[""INTERCHROMOSOMAL[chr4--chr5]""]"	chr4:155733644-chr5:57246300	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GTF3C2--KDSR	1	0	1.0	0.0	ONLY_REF_SPLICE	GTF3C2^ENSG00000115207.13	chr2:27356739:-	KDSR^ENSG00000119537.18	chr18:63362868:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2345:47825:11397	.	YES_LDAS	0.0034	GT	1.8295	AG	1.9656	"[""INTERCHROMOSOMAL[chr2--chr18]""]"	chr2:27356739-chr18:63362868	False			0	Read count too low: 1 < 8	FAIL	1
GTF2IRD2--EIF2S1	1	0	0.5	0.0	ONLY_REF_SPLICE	GTF2IRD2^ENSG00000196275.14	chr7:74851367:-	EIF2S1^ENSG00000134001.15	chr14:67364767:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1132:47655:21948	.	NO_LDAS	0.0017	GT	1.6402	AG	1.9656	"[""INTERCHROMOSOMAL[chr7--chr14]""]"	chr7:74851367-chr14:67364767	False			0	Read count too low: 1 < 8	FAIL	1
GTF2IP14--AC024405.2	1	0	1.0	0.0	ONLY_REF_SPLICE	GTF2IP14^ENSG00000226002.1	chr7:65091952:+	AC024405.2^ENSG00000254840.1	chr11:50315415:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1316:10522:28674	.	YES_LDAS	0.0034	GT	1.7968	AG	1.9219	"[""INTERCHROMOSOMAL[chr7--chr11]""]"	chr7:65091952-chr11:50315415	False			0	Read count too low: 1 < 8	FAIL	1
GTDC1--ARHGAP15	1	0	1.0	0.0	ONLY_REF_SPLICE	GTDC1^ENSG00000121964.14	chr2:143970653:-	ARHGAP15^ENSG00000075884.14	chr2:143435601:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1121:49888:9253	.	YES_LDAS	0.0034	GT	1.9656	AG	1.7465	"[""INTRACHROMOSOMAL[chr2:0.17Mb]""]"	chr2:143970653-chr2:143435601	False			0	Read count too low: 1 < 8	FAIL	1
GSDMC--RNF41	1	0	1.0	0.0	ONLY_REF_SPLICE	GSDMC^ENSG00000147697.9	chr8:129776102:-	RNF41^ENSG00000181852.18	chr12:56207749:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1198:26184:26460	.	YES_LDAS	0.0034	GT	1.7232	AG	1.8062	"[""INTERCHROMOSOMAL[chr8--chr12]""]"	chr8:129776102-chr12:56207749	False			0	Read count too low: 1 < 8	FAIL	1
GRM4--HMGN1	1	0	0.25	0.0	INCL_NON_REF_SPLICE	GRM4^ENSG00000124493.14	chr6:34103581:-	HMGN1^ENSG00000205581.11	chr21:39348323:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2270:23328:21626	.	NO_LDAS	0.0009	GT	1.7232	AG	1.7819	"[""INTERCHROMOSOMAL[chr6--chr21]""]"	chr6:34103581-chr21:39348323	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GRK5--NEUROD2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GRK5^ENSG00000198873.12	chr10:119207663:+	NEUROD2^ENSG00000171532.5	chr17:39607877:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1370:19793:18698	.	NO_LDAS	0.0034	GT	1.0389	AG	1.231	"[""INTERCHROMOSOMAL[chr10--chr17]""]"	chr10:119207663-chr17:39607877	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GRK1--DOCK9	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GRK1^ENSG00000185974.7	chr13:113735911:+	DOCK9^ENSG00000088387.19	chr13:98955551:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2251:43262:1112	.	NO_LDAS	0.0034	GT	1.5219	AG	1.7465	"[""INTRACHROMOSOMAL[chr13:14.58Mb]""]"	chr13:113735911-chr13:98955551	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GRHL2--TTK	1	0	1.0	0.0	ONLY_REF_SPLICE	GRHL2^ENSG00000083307.12	chr8:101492789:+	TTK^ENSG00000112742.10	chr6:80022324:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1269:20740:9772	.	NO_LDAS	0.0034	GT	1.7465	AG	1.7232	"[""INTERCHROMOSOMAL[chr8--chr6]""]"	chr8:101492789-chr6:80022324	False			0	Read count too low: 1 < 8	FAIL	1
GPRIN2--NPY4R	1	0	0.5	0.0	ONLY_REF_SPLICE	GPRIN2^ENSG00000204175.5	chr10:46554585:-	NPY4R^ENSG00000204174.8	chr10:46462694:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1146:13289:11523	.	YES_LDAS	0.0017	GT	1.6402	AG	1.9219	"[""INTRACHROMOSOMAL[chr10:0.08Mb]"",""NEIGHBORS[83086]""]"	chr10:46554585-chr10:46462694	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
GPR61--MESD	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GPR61^ENSG00000156097.12	chr1:109545530:+	MESD^ENSG00000117899.11	chr15:80977733:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2395:27381:27385	.	NO_LDAS	0.0034	GT	1.3996	AG	1.6729	"[""INTERCHROMOSOMAL[chr1--chr15]""]"	chr1:109545530-chr15:80977733	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GPR52--AL136982.4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GPR52^ENSG00000203737.5	chr1:174448038:+	AL136982.4^ENSG00000261011.1	chr10:87008355:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2184:26265:22817	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8323	"[""INTERCHROMOSOMAL[chr1--chr10]""]"	chr1:174448038-chr10:87008355	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GPR153--GREB1L	1	0	0.33	0.0	INCL_NON_REF_SPLICE	GPR153^ENSG00000158292.7	chr1:6260866:-	GREB1L^ENSG00000141449.15	chr18:21499858:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1219:20068:12896	.	NO_LDAS	0.0011	GC	1.5058	AG	1.6895	"[""INTERCHROMOSOMAL[chr1--chr18]""]"	chr1:6260866-chr18:21499858	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GPHN--DAAM1	1	0	1.0	0.0	ONLY_REF_SPLICE	GPHN^ENSG00000171723.16	chr14:66508591:+	DAAM1^ENSG00000100592.16	chr14:59263441:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1116:14130:16764	.	NO_LDAS	0.0034	GT	1.9899	AG	1.9329	"[""INTRACHROMOSOMAL[chr14:7.14Mb]""]"	chr14:66508591-chr14:59263441	False			0	Read count too low: 1 < 8	FAIL	1
GPC5-IT1--CEP295NL	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GPC5-IT1^ENSG00000236240.1	chr13:92509582:+	CEP295NL^ENSG00000178404.10	chr17:78873912:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2267:42744:16526	.	NO_LDAS	0.0034	GT	1.5546	AG	1.8062	"[""INTERCHROMOSOMAL[chr13--chr17]""]"	chr13:92509582-chr17:78873912	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GPC5--PLPP3	1	0	1.0	0.0	ONLY_REF_SPLICE	GPC5^ENSG00000179399.15	chr13:91448922:+	PLPP3^ENSG00000162407.9	chr1:56537112:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1216:14785:6549	.	YES_LDAS	0.0034	GT	1.9329	AG	1.371	"[""INTERCHROMOSOMAL[chr13--chr1]""]"	chr13:91448922-chr1:56537112	False			0	Read count too low: 1 < 8	FAIL	1
GOLM2--USP8	1	0	0.5	0.0	ONLY_REF_SPLICE	GOLM2^ENSG00000166734.20	chr15:44338317:+	USP8^ENSG00000138592.14	chr15:50462280:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2317:51207:4447	.	YES_LDAS	0.0017	GT	1.8323	AG	1.6895	"[""INTRACHROMOSOMAL[chr15:6.01Mb]""]"	chr15:44338317-chr15:50462280	False			0	Read count too low: 1 < 8	FAIL	1
GOLGA6L10--YTHDF2	1	0	0.08	0.0	INCL_NON_REF_SPLICE	GOLGA6L10^ENSG00000278662.5	chr15:82345809:-	YTHDF2^ENSG00000198492.16	chr1:28743819:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2437:12860:21710	.	NO_LDAS	0.0003	GT	1.7465	AG	1.4256	"[""INTERCHROMOSOMAL[chr15--chr1]""]"	chr15:82345809-chr1:28743819	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GOLGA2--MTPAP	1	0	1.0	0.0	ONLY_REF_SPLICE	GOLGA2^ENSG00000167110.18	chr9:128261172:-	MTPAP^ENSG00000107951.15	chr10:30368650:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1441:35043:16105	.	NO_LDAS	0.0034	GT	1.8323	AG	1.6049	"[""INTERCHROMOSOMAL[chr9--chr10]""]"	chr9:128261172-chr10:30368650	False			0	Read count too low: 1 < 8	FAIL	1
GNS--HLA-A	1	0	0.5	0.0	INCL_NON_REF_SPLICE	GNS^ENSG00000135677.11	chr12:64715124:-	HLA-A^ENSG00000206503.13	chr6:29945059:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2310:11695:16329	.	NO_LDAS	0.0017	GT	1.6402	AG	1.2729	"[""INTERCHROMOSOMAL[chr12--chr6]""]"	chr12:64715124-chr6:29945059	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GNPTG--D2HGDH	1	0	1.0	0.0	ONLY_REF_SPLICE	GNPTG^ENSG00000090581.10	chr16:1352306:+	D2HGDH^ENSG00000180902.18	chr2:241767710:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1101:46490:8272	.	YES_LDAS	0.0034	GT	1.7819	AG	1.9656	"[""INTERCHROMOSOMAL[chr16--chr2]""]"	chr16:1352306-chr2:241767710	False			0	Read count too low: 1 < 8	FAIL	1
GNG10--UGCG	1	0	1.0	0.0	ONLY_REF_SPLICE	GNG10^ENSG00000242616.4	chr9:111666946:+	UGCG^ENSG00000148154.10	chr9:111914605:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1186:36636:15307	.	YES_LDAS	0.0034	GT	1.9329	AG	1.7819	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr9:0.23Mb]""]"	chr9:111666946-chr9:111914605	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
GNAI3--ARHGEF26	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GNAI3^ENSG00000065135.12	chr1:109595117:+	ARHGEF26^ENSG00000114790.13	chr3:154129574:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:47687:23994	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr1--chr3]""]"	chr1:109595117-chr3:154129574	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GMNN--ZNF451	1	0	1.0	0.0	ONLY_REF_SPLICE	GMNN^ENSG00000112312.10	chr6:24777297:+	ZNF451^ENSG00000112200.17	chr6:57150719:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1128:43432:25984	.	YES_LDAS	0.0034	GT	1.2419	AG	1.5656	"[""INTRACHROMOSOMAL[chr6:32.30Mb]""]"	chr6:24777297-chr6:57150719	False			0	Read count too low: 1 < 8	FAIL	1
GLYR1--ADCY7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GLYR1^ENSG00000140632.17	chr16:4847279:-	ADCY7^ENSG00000121281.13	chr16:50291736:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2183:6881:8525	.	NO_LDAS	0.0034	GT	1.4566	AG	1.5219	"[""INTRACHROMOSOMAL[chr16:45.40Mb]""]"	chr16:4847279-chr16:50291736	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GLS--RNF175	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GLS^ENSG00000115419.13	chr2:190895248:+	RNF175^ENSG00000145428.15	chr4:153759817:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1188:19558:15377	.	NO_LDAS	0.0034	GT	1.4295	AG	1.3383	"[""INTERCHROMOSOMAL[chr2--chr4]""]"	chr2:190895248-chr4:153759817	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GLRA2--PITPNA	1	0	0.33	0.0	INCL_NON_REF_SPLICE	GLRA2^ENSG00000101958.14	chrX:14529875:+	PITPNA^ENSG00000174238.15	chr17:1534143:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1329:6040:12000	.	NO_LDAS	0.0011	AT	1.9656	AC	1.9086	"[""INTERCHROMOSOMAL[chrX--chr17]""]"	chrX:14529875-chr17:1534143	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GLCCI1--PAM	1	0	1.0	0.0	ONLY_REF_SPLICE	GLCCI1^ENSG00000106415.13	chr7:8004059:+	PAM^ENSG00000145730.20	chr5:102946837:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1121:50042:25830	.	YES_LDAS	0.0034	GT	1.8892	AG	1.7232	"[""INTERCHROMOSOMAL[chr7--chr5]""]"	chr7:8004059-chr5:102946837	False			0	Read count too low: 1 < 8	FAIL	1
GID4--KCNJ3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GID4^ENSG00000141034.10	chr17:18039613:+	KCNJ3^ENSG00000162989.5	chr2:154698662:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1479:15497:22607	.	NO_LDAS	0.0034	GC	1.4716	AG	1.371	"[""INTERCHROMOSOMAL[chr17--chr2]""]"	chr17:18039613-chr2:154698662	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GID4--ADAM22	1	0	0.5	0.0	INCL_NON_REF_SPLICE	GID4^ENSG00000141034.10	chr17:18039609:+	ADAM22^ENSG00000008277.14	chr7:87934250:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1311:25270:29053	.	NO_LDAS	0.0017	GT	1.053	AG	1.5546	"[""INTERCHROMOSOMAL[chr17--chr7]""]"	chr17:18039609-chr7:87934250	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GGA1--PTGFRN	1	0	0.33	0.0	INCL_NON_REF_SPLICE	GGA1^ENSG00000100083.19	chr22:37630162:+	PTGFRN^ENSG00000134247.10	chr1:116967280:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2426:40552:19594	.	NO_LDAS	0.0011	GT	1.7819	AG	1.7819	"[""INTERCHROMOSOMAL[chr22--chr1]""]"	chr22:37630162-chr1:116967280	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GGA1--HIPK1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	GGA1^ENSG00000100083.19	chr22:37630162:+	HIPK1^ENSG00000163349.22	chr1:113973062:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2426:40552:19594	.	NO_LDAS	0.0011	GT	1.7819	AG	1.5219	"[""INTERCHROMOSOMAL[chr22--chr1]""]"	chr22:37630162-chr1:113973062	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GGA1--AC099522.1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	GGA1^ENSG00000100083.19	chr22:37630162:+	AC099522.1^ENSG00000249149.2	chr5:73397560:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2426:40552:19594	.	NO_LDAS	0.0011	GT	1.7819	AG	1.8323	"[""INTERCHROMOSOMAL[chr22--chr5]""]"	chr22:37630162-chr5:73397560	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GET4--TGFBI	1	0	0.33	0.0	INCL_NON_REF_SPLICE	GET4^ENSG00000239857.7	chr7:884614:+	TGFBI^ENSG00000120708.17	chr5:136052976:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:15797:14522	.	NO_LDAS	0.0011	GT	1.4566	AG	1.8062	"[""INTERCHROMOSOMAL[chr7--chr5]""]"	chr7:884614-chr5:136052976	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GDF2--PKP4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GDF2^ENSG00000263761.3	chr10:47327227:+	PKP4^ENSG00000144283.22	chr2:158669791:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1106:1979:3508	.	NO_LDAS	0.0034	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chr10--chr2]""]"	chr10:47327227-chr2:158669791	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GCC2-AS1--PLGLB1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GCC2-AS1^ENSG00000214184.3	chr2:108511930:-	PLGLB1^ENSG00000183281.15	chr2:87003168:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2480:32090:9505	.	YES_LDAS	0.0034	GT	1.5329	AG	1.9329	"[""INTRACHROMOSOMAL[chr2:21.49Mb]""]"	chr2:108511930-chr2:87003168	False			0	Read count too low: 1 < 8	FAIL	1
GCC2--AC010478.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GCC2^ENSG00000135968.21	chr2:108451112:+	AC010478.1^ENSG00000259663.2	chr5:51375111:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2261:17601:21738	.	NO_LDAS	0.0034	GT	1.8892	AG	1.5301	"[""INTERCHROMOSOMAL[chr2--chr5]""]"	chr2:108451112-chr5:51375111	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GATD1--ZADH2	1	0	1.0	0.0	ONLY_REF_SPLICE	GATD1^ENSG00000177225.17	chr11:777399:-	ZADH2^ENSG00000180011.7	chr18:75202340:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1430:30051:16960	.	YES_LDAS	0.0034	GT	1.4295	AG	1.4566	"[""INTERCHROMOSOMAL[chr11--chr18]""]"	chr11:777399-chr18:75202340	False			0	Read count too low: 1 < 8	FAIL	1
GANC--CAPN3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GANC^ENSG00000214013.9	chr15:42352124:+	CAPN3^ENSG00000092529.25	chr15:42384483:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1192:51660:1336	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8062	"[""INTRACHROMOSOMAL[chr15:0.00Mb]"",""NEIGHBORS[2563]""]"	chr15:42352124-chr15:42384483	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
GALC--PSME4	1	0	1.0	0.0	ONLY_REF_SPLICE	GALC^ENSG00000054983.17	chr14:87893356:-	PSME4^ENSG00000068878.15	chr2:53940000:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1337:50713:8861	.	YES_LDAS	0.0034	GT	1.9329	AG	1.7056	"[""INTERCHROMOSOMAL[chr14--chr2]""]"	chr14:87893356-chr2:53940000	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
GAL--LINC01588	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GAL^ENSG00000069482.7	chr11:68685004:+	LINC01588^ENSG00000214900.11	chr14:50090438:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1226:34735:29221	.	NO_LDAS	0.0034	GT	1.5058	AG	1.6895	"[""INTERCHROMOSOMAL[chr11--chr14]""]"	chr11:68685004-chr14:50090438	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
GABARAPL2--CAPZB	1	0	1.0	0.0	INCL_NON_REF_SPLICE	GABARAPL2^ENSG00000034713.8	chr16:75566491:+	CAPZB^ENSG00000077549.19	chr1:19419748:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1105:39072:22915	.	NO_LDAS	0.0034	GT	1.7465	AG	1.9656	"[""INTERCHROMOSOMAL[chr16--chr1]""]"	chr16:75566491-chr1:19419748	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
G3BP2--BRIP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	G3BP2^ENSG00000138757.15	chr4:75648639:-	BRIP1^ENSG00000136492.9	chr17:61683675:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1354:34719:6128	.	NO_LDAS	0.0034	GT	1.5656	AG	1.6402	"[""INTERCHROMOSOMAL[chr4--chr17]""]"	chr4:75648639-chr17:61683675	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FSBP--TMEM67	1	0	1.0	0.0	ONLY_REF_SPLICE	FSBP^ENSG00000265817.4	chr8:94399414:-	TMEM67^ENSG00000164953.16	chr8:93758483:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1404:18337:12280	.	YES_LDAS	0.0034	GT	1.8323	AG	1.7465	"[""INTRACHROMOSOMAL[chr8:0.56Mb]""]"	chr8:94399414-chr8:93758483	False			0	Read count too low: 1 < 8	FAIL	1
FRY--SCYL1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FRY^ENSG00000073910.23	chr13:31950342:+	SCYL1^ENSG00000142186.17	chr11:65526783:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1263:25319:9435	.	NO_LDAS	0.0034	GT	1.2729	AG	1.9656	"[""INTERCHROMOSOMAL[chr13--chr11]""]"	chr13:31950342-chr11:65526783	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FRMPD4--HOPX	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FRMPD4^ENSG00000169933.16	chrX:12707618:+	HOPX^ENSG00000171476.22	chr4:56648797:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2384:51360:13821	.	NO_LDAS	0.0034	GT	1.6402	AG	1.8062	"[""INTERCHROMOSOMAL[chrX--chr4]""]"	chrX:12707618-chr4:56648797	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FRMPD3--NUMBL	1	0	0.25	0.0	INCL_NON_REF_SPLICE	FRMPD3^ENSG00000147234.10	chrX:107603268:+	NUMBL^ENSG00000105245.9	chr19:40668007:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2139:33044:23013	.	YES_LDAS	0.0009	GT	1.585	AG	1.5058	"[""INTERCHROMOSOMAL[chrX--chr19]""]"	chrX:107603268-chr19:40668007	False			0	Read count too low: 1 < 8	FAIL	1
FRMPD3--MAML3	1	0	0.25	0.0	INCL_NON_REF_SPLICE	FRMPD3^ENSG00000147234.10	chrX:107603268:+	MAML3^ENSG00000196782.12	chr4:139889524:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2139:33044:23013	.	YES_LDAS	0.0009	GT	1.585	AG	1.5058	"[""INTERCHROMOSOMAL[chrX--chr4]""]"	chrX:107603268-chr4:139889524	False			0	Read count too low: 1 < 8	FAIL	1
FRMD8--RNA5SP174	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FRMD8^ENSG00000126391.14	chr11:65411574:+	RNA5SP174^ENSG00000199572.1	chr4:190015160:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2450:43869:8693	.	NO_LDAS	0.0034	GC	1.9329	AG	1.5546	"[""INTERCHROMOSOMAL[chr11--chr4]""]"	chr11:65411574-chr4:190015160	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FRMD4A--SIPA1L3	1	0	1.0	0.0	ONLY_REF_SPLICE	FRMD4A^ENSG00000151474.23	chr10:13659323:-	SIPA1L3^ENSG00000105738.11	chr19:38192145:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1164:14551:14606	.	NO_LDAS	0.0034	GT	1.9219	AG	1.7819	"[""INTERCHROMOSOMAL[chr10--chr19]""]"	chr10:13659323-chr19:38192145	False			0	Read count too low: 1 < 8	FAIL	1
FPGT--DCAF8	1	0	1.0	0.0	ONLY_REF_SPLICE	FPGT^ENSG00000254685.7	chr1:74201410:+	DCAF8^ENSG00000132716.19	chr1:160244034:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:50762:9505	.	YES_LDAS	0.0034	GT	1.7465	AG	1.9329	"[""INTRACHROMOSOMAL[chr1:85.98Mb]""]"	chr1:74201410-chr1:160244034	False			0	Read count too low: 1 < 8	FAIL	1
FOXP1--CORO1B	1	0	1.0	0.0	ONLY_REF_SPLICE	FOXP1^ENSG00000114861.23	chr3:70972555:-	CORO1B^ENSG00000172725.14	chr11:67438501:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1183:42841:17731	.	YES_LDAS	0.0034	GT	1.7968	AG	1.7232	"[""INTERCHROMOSOMAL[chr3--chr11]""]"	chr3:70972555-chr11:67438501	False			0	Read count too low: 1 < 8	FAIL	1
FOXN3--WWTR1	1	0	1.0	0.0	ONLY_REF_SPLICE	FOXN3^ENSG00000053254.16	chr14:89411934:-	WWTR1^ENSG00000018408.15	chr3:149542537:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1257:47032:7193	.	YES_LDAS	0.0034	GT	1.5628	AG	1.8892	"[""INTERCHROMOSOMAL[chr14--chr3]""]"	chr14:89411934-chr3:149542537	False			0	Read count too low: 1 < 8	FAIL	1
FOXN3--LINC00272	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FOXN3^ENSG00000053254.16	chr14:89411934:-	LINC00272^ENSG00000203729.8	chr1:182407950:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1279:1744:4755	.	NO_LDAS	0.0034	GT	1.5628	AG	1.9086	"[""INTERCHROMOSOMAL[chr14--chr1]""]"	chr14:89411934-chr1:182407950	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FOXK2--TBCD	1	0	1.0	0.0	ONLY_REF_SPLICE	FOXK2^ENSG00000141568.21	chr17:82587272:+	TBCD^ENSG00000141556.21	chr17:82905936:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2168:51619:13121	.	YES_LDAS	0.0034	GT	1.9086	AG	1.8062	"[""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr17:0.11Mb]""]"	chr17:82587272-chr17:82905936	False			0	Read count too low: 1 < 8	FAIL	1
FN3K--CAPRIN1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FN3K^ENSG00000167363.14	chr17:82735617:+	CAPRIN1^ENSG00000135387.21	chr11:34052421:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1404:43189:10010	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7232	"[""INTERCHROMOSOMAL[chr17--chr11]""]"	chr17:82735617-chr11:34052421	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FKBP4P1--C1S	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FKBP4P1^ENSG00000251463.2	chr4:118194239:-	C1S^ENSG00000182326.15	chr12:7066518:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2490:27438:3494	.	NO_LDAS	0.0034	GC	1.9329	AG	1.8295	"[""INTERCHROMOSOMAL[chr4--chr12]""]"	chr4:118194239-chr12:7066518	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FKBP15--TCF25	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FKBP15^ENSG00000119321.9	chr9:113169751:-	TCF25^ENSG00000141002.20	chr16:89884582:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1351:52032:16021	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9899	"[""INTERCHROMOSOMAL[chr9--chr16]""]"	chr9:113169751-chr16:89884582	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FILIP1--ICA1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FILIP1^ENSG00000118407.15	chr6:75308840:-	ICA1^ENSG00000003147.19	chr7:8157036:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1366:14923:24274	.	NO_LDAS	0.0034	GT	1.9086	AG	1.7819	"[""INTERCHROMOSOMAL[chr6--chr7]""]"	chr6:75308840-chr7:8157036	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FGF14--MEIS2	1	0	1.0	0.0	ONLY_REF_SPLICE	FGF14^ENSG00000102466.16	chr13:102401471:-	MEIS2^ENSG00000134138.20	chr15:37036959:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1275:18183:26671	.	YES_LDAS	0.0034	GT	1.6895	AG	1.8062	"[""INTERCHROMOSOMAL[chr13--chr15]""]"	chr13:102401471-chr15:37036959	False			0	Read count too low: 1 < 8	FAIL	1
FER--AC008588.1	1	0	1.0	0.0	ONLY_REF_SPLICE	FER^ENSG00000151422.13	chr5:108835807:+	AC008588.1^ENSG00000248634.1	chr5:128742437:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1245:44759:22957	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9329	"[""INTRACHROMOSOMAL[chr5:19.47Mb]""]"	chr5:108835807-chr5:128742437	False			0	Read count too low: 1 < 8	FAIL	1
FDXR--FAT1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FDXR^ENSG00000161513.12	chr17:74869950:-	FAT1^ENSG00000083857.14	chr4:186663494:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1467:15408:14578	.	NO_LDAS	0.0034	GT	1.8323	AG	1.8256	"[""INTERCHROMOSOMAL[chr17--chr4]""]"	chr17:74869950-chr4:186663494	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FCHO2--SOS2	1	0	1.0	0.0	ONLY_REF_SPLICE	FCHO2^ENSG00000157107.14	chr5:73041315:+	SOS2^ENSG00000100485.12	chr14:50140059:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1311:42914:1322	.	YES_LDAS	0.0034	GT	1.9329	AG	1.7819	"[""INTERCHROMOSOMAL[chr5--chr14]""]"	chr5:73041315-chr14:50140059	False			0	Read count too low: 1 < 8	FAIL	1
FBXO42--KIF1B	1	0	1.0	0.0	ONLY_REF_SPLICE	FBXO42^ENSG00000037637.11	chr1:16352255:-	KIF1B^ENSG00000054523.18	chr1:10323884:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1424:45341:27974	.	NO_LDAS	0.0034	GT	1.6402	AG	1.7968	"[""INTRACHROMOSOMAL[chr1:5.87Mb]""]"	chr1:16352255-chr1:10323884	False			0	Read count too low: 1 < 8	FAIL	1
FBXO32--OSER1	1	0	1.0	0.0	ONLY_REF_SPLICE	FBXO32^ENSG00000156804.7	chr8:123540899:-	OSER1^ENSG00000132823.11	chr20:44206998:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1198:14219:14059	.	YES_LDAS	0.0034	GT	1.8256	AG	1.8295	"[""INTERCHROMOSOMAL[chr8--chr20]""]"	chr8:123540899-chr20:44206998	False			0	Read count too low: 1 < 8	FAIL	1
FBXO30-DT--FAM168A	1	0	1.0	0.0	ONLY_REF_SPLICE	FBXO30-DT^ENSG00000235652.9	chr6:145828456:+	FAM168A^ENSG00000054965.11	chr11:73430770:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1112:43650:8763	.	YES_LDAS	0.0034	GT	1.8323	AG	1.8295	"[""INTERCHROMOSOMAL[chr6--chr11]""]"	chr6:145828456-chr11:73430770	False			0	Read count too low: 1 < 8	FAIL	1
FBXL8--CYBC1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FBXL8^ENSG00000135722.9	chr16:67163840:+	CYBC1^ENSG00000178927.18	chr17:82445705:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1245:45058:15741	.	YES_LDAS	0.0034	GT	1.4716	AG	1.9329	"[""INTERCHROMOSOMAL[chr16--chr17]""]"	chr16:67163840-chr17:82445705	False			0	Read count too low: 1 < 8	FAIL	1
FBXL4--RNF217	1	0	1.0	0.0	ONLY_REF_SPLICE	FBXL4^ENSG00000112234.9	chr6:98926477:-	RNF217^ENSG00000146373.16	chr6:125045211:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1482:34517:20491	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTRACHROMOSOMAL[chr6:26.01Mb]""]"	chr6:98926477-chr6:125045211	False			0	Read count too low: 1 < 8	FAIL	1
FBN1--UBR2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FBN1^ENSG00000166147.14	chr15:48472602:-	UBR2^ENSG00000024048.11	chr6:42564251:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1343:38441:26839	.	NO_LDAS	0.0034	GT	1.9329	AG	1.2729	"[""INTERCHROMOSOMAL[chr15--chr6]""]"	chr15:48472602-chr6:42564251	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FBH1--ZC3H3	1	0	0.25	0.0	INCL_NON_REF_SPLICE	FBH1^ENSG00000134452.20	chr10:5906232:+	ZC3H3^ENSG00000014164.7	chr8:143538242:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1356:9770:27259	.	NO_LDAS	0.0009	GC	1.7968	AG	1.7968	"[""INTERCHROMOSOMAL[chr10--chr8]""]"	chr10:5906232-chr8:143538242	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAU--SFTA1P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FAU^ENSG00000149806.11	chr11:65120977:-	SFTA1P^ENSG00000225383.8	chr10:10794728:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:29550:1126	.	NO_LDAS	0.0034	GT	1.9656	AG	1.4566	"[""INTERCHROMOSOMAL[chr11--chr10]""]"	chr11:65120977-chr10:10794728	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAU--MRGPRX4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FAU^ENSG00000149806.11	chr11:65120729:-	MRGPRX4^ENSG00000179817.5	chr11:18173087:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2158:19793:8244	.	NO_LDAS	0.0034	GT	1.9329	AG	1.8295	"[""INTRACHROMOSOMAL[chr11:46.95Mb]""]"	chr11:65120729-chr11:18173087	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FATE1--TJAP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FATE1^ENSG00000147378.11	chrX:151721951:+	TJAP1^ENSG00000137221.14	chr6:43503623:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1301:18838:26685	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7968	"[""INTERCHROMOSOMAL[chrX--chr6]""]"	chrX:151721951-chr6:43503623	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FARSA--KRT18	1	0	0.5	0.0	INCL_NON_REF_SPLICE	FARSA^ENSG00000179115.11	chr19:12930429:-	KRT18^ENSG00000111057.11	chr12:52949833:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1451:12140:6395	.	NO_LDAS	0.0017	GT	1.7465	AG	1.7968	"[""INTERCHROMOSOMAL[chr19--chr12]""]"	chr19:12930429-chr12:52949833	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FARP2--TBC1D22A	1	0	1.0	0.0	ONLY_REF_SPLICE	FARP2^ENSG00000006607.14	chr2:241373290:+	TBC1D22A^ENSG00000054611.14	chr22:46997634:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1298:41215:14494	.	YES_LDAS	0.0034	GT	1.7819	AG	1.8256	"[""INTERCHROMOSOMAL[chr2--chr22]""]"	chr2:241373290-chr22:46997634	False			0	Read count too low: 1 < 8	FAIL	1
FAM83G--FAM87A	1	0	0.5	0.0	INCL_NON_REF_SPLICE	FAM83G^ENSG00000188522.15	chr17:18971373:-	FAM87A^ENSG00000182366.10	chr8:383701:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1327:8637:2485	.	NO_LDAS	0.0017	GC	1.4566	AG	1.7056	"[""INTERCHROMOSOMAL[chr17--chr8]""]"	chr17:18971373-chr8:383701	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAM81A--ETFA	1	0	1.0	0.0	ONLY_REF_SPLICE	FAM81A^ENSG00000157470.12	chr15:59460206:+	ETFA^ENSG00000140374.16	chr15:76295737:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1377:13208:3340	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9656	"[""INTRACHROMOSOMAL[chr15:16.69Mb]""]"	chr15:59460206-chr15:76295737	False			0	Read count too low: 1 < 8	FAIL	1
FAM78B--RNF38	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FAM78B^ENSG00000188859.7	chr1:166166339:-	RNF38^ENSG00000137075.18	chr9:36400940:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2232:43917:15755	.	NO_LDAS	0.0034	GT	1.3383	AG	1.2366	"[""INTERCHROMOSOMAL[chr1--chr9]""]"	chr1:166166339-chr9:36400940	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAM78B--NT5DC2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FAM78B^ENSG00000188859.7	chr1:166166339:-	NT5DC2^ENSG00000168268.11	chr3:52534216:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1149:26799:1995	.	NO_LDAS	0.0034	GT	1.3383	AG	1.5546	"[""INTERCHROMOSOMAL[chr1--chr3]""]"	chr1:166166339-chr3:52534216	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAM25BP--AP003110.1	1	0	0.25	0.0	ONLY_REF_SPLICE	FAM25BP^ENSG00000273225.4	chr10:46371201:+	AP003110.1^ENSG00000255084.1	chr11:78555215:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2254:32300:12644	.	YES_LDAS	0.0009	GT	1.5628	AG	1.8062	"[""INTERCHROMOSOMAL[chr10--chr11]""]"	chr10:46371201-chr11:78555215	False			0	Read count too low: 1 < 8	FAIL	1
FAM20A--BCAS3	1	0	1.0	0.0	ONLY_REF_SPLICE	FAM20A^ENSG00000108950.12	chr17:68600263:-	BCAS3^ENSG00000141376.23	chr17:60868576:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1385:20214:21276	.	YES_LDAS	0.0034	GT	1.7819	AG	1.6895	"[""INTRACHROMOSOMAL[chr17:7.14Mb]""]"	chr17:68600263-chr17:60868576	False			0	Read count too low: 1 < 8	FAIL	1
FAM184B--PPFIA1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	FAM184B^ENSG00000047662.5	chr4:17693389:-	PPFIA1^ENSG00000131626.19	chr11:70333481:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1255:45900:1140	.	NO_LDAS	0.0034	GT	1.8323	AG	1.8892	"[""INTERCHROMOSOMAL[chr4--chr11]""]"	chr4:17693389-chr11:70333481	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAM177A1--HECTD1	1	0	1.0	0.0	ONLY_REF_SPLICE	FAM177A1^ENSG00000151327.13	chr14:35053451:+	HECTD1^ENSG00000092148.13	chr14:31150221:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1445:13192:26208	.	NO_LDAS	0.0034	GT	1.9086	AG	1.7465	"[""INTRACHROMOSOMAL[chr14:3.84Mb]""]"	chr14:35053451-chr14:31150221	False			0	Read count too low: 1 < 8	FAIL	1
FAM174B--LINC01140	1	0	0.5	0.0	INCL_NON_REF_SPLICE	FAM174B^ENSG00000185442.13	chr15:92655443:-	LINC01140^ENSG00000267272.5	chr1:87165389:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2156:19882:17871	.	NO_LDAS	0.0017	GT	1.6895	AG	1.9329	"[""INTERCHROMOSOMAL[chr15--chr1]""]"	chr15:92655443-chr1:87165389	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAM174B--CHD2	1	0	1.0	0.0	ONLY_REF_SPLICE	FAM174B^ENSG00000185442.13	chr15:92809646:-	CHD2^ENSG00000173575.22	chr15:92927244:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1268:22172:23153	.	YES_LDAS	0.0034	GT	1.7819	AG	1.5656	"[""INTRACHROMOSOMAL[chr15:0.09Mb]"",""LOCAL_INVERSION:-:+:[90305]""]"	chr15:92809646-chr15:92927244	False			0	Read count too low: 1 < 8	FAIL	1
FAM171A2--DHX36	1	0	0.5	0.0	INCL_NON_REF_SPLICE	FAM171A2^ENSG00000161682.15	chr17:44353529:-	DHX36^ENSG00000174953.14	chr3:154324274:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1413:31880:21500	.	NO_LDAS	0.0017	GT	0.9056	AG	1.231	"[""INTERCHROMOSOMAL[chr17--chr3]""]"	chr17:44353529-chr3:154324274	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
FAM168B--MBOAT2	1	0	1.0	0.0	ONLY_REF_SPLICE	FAM168B^ENSG00000152102.18	chr2:131071855:-	MBOAT2^ENSG00000143797.12	chr2:8958642:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1190:46166:19959	.	YES_LDAS	0.0034	GT	1.7819	AG	1.8892	"[""INTRACHROMOSOMAL[chr2:122.04Mb]""]"	chr2:131071855-chr2:8958642	False			0	Read count too low: 1 < 8	FAIL	1
FAM133B--CWF19L2	1	0	1.0	0.0	ONLY_REF_SPLICE	FAM133B^ENSG00000234545.8	chr7:92590268:-	CWF19L2^ENSG00000152404.15	chr11:107353736:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1240:16314:19062	.	NO_LDAS	0.0034	GT	1.8295	AG	1.7465	"[""INTERCHROMOSOMAL[chr7--chr11]""]"	chr7:92590268-chr11:107353736	False			0	Read count too low: 1 < 8	FAIL	1
FAM120B--DCAF1	1	0	1.0	0.0	ONLY_REF_SPLICE	FAM120B^ENSG00000112584.14	chr6:170358318:+	DCAF1^ENSG00000145041.15	chr3:51443903:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1239:39630:28338	.	YES_LDAS	0.0034	GT	1.9086	AG	1.7465	"[""INTERCHROMOSOMAL[chr6--chr3]""]"	chr6:170358318-chr3:51443903	False			0	Read count too low: 1 < 8	FAIL	1
FAM117B--TANC1	1	0	1.0	0.0	ONLY_REF_SPLICE	FAM117B^ENSG00000138439.12	chr2:202696032:+	TANC1^ENSG00000115183.15	chr2:159065896:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1384:27673:13289	.	NO_LDAS	0.0034	GT	1.7465	AG	1.6729	"[""INTRACHROMOSOMAL[chr2:43.40Mb]""]"	chr2:202696032-chr2:159065896	False			0	Read count too low: 1 < 8	FAIL	1
F11R--SCML2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	F11R^ENSG00000158769.18	chr1:161000224:-	SCML2^ENSG00000102098.19	chrX:18260182:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2319:38449:12420	.	NO_LDAS	0.0017	GT	1.8062	AG	1.9329	"[""INTERCHROMOSOMAL[chr1--chrX]""]"	chr1:161000224-chrX:18260182	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
F11R--LONP2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	F11R^ENSG00000158769.18	chr1:161000224:-	LONP2^ENSG00000102910.14	chr16:48356178:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2319:38449:12420	.	NO_LDAS	0.0017	GT	1.8062	AG	1.9656	"[""INTERCHROMOSOMAL[chr1--chr16]""]"	chr1:161000224-chr16:48356178	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EXOSC7--PYCARD	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EXOSC7^ENSG00000075914.13	chr3:44975460:+	PYCARD^ENSG00000103490.14	chr16:31202411:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2125:40568:12504	.	NO_LDAS	0.0034	GT	1.1589	AG	1.1033	"[""INTERCHROMOSOMAL[chr3--chr16]""]"	chr3:44975460-chr16:31202411	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EXOC4--SDHAF3	1	0	1.0	0.0	ONLY_REF_SPLICE	EXOC4^ENSG00000131558.15	chr7:133630141:+	SDHAF3^ENSG00000196636.8	chr7:97181012:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1357:24898:8286	.	YES_LDAS	0.0034	GT	1.7819	AG	1.9656	"[""INTRACHROMOSOMAL[chr7:36.07Mb]""]"	chr7:133630141-chr7:97181012	False			0	Read count too low: 1 < 8	FAIL	1
EXD3--GALNS	1	0	1.0	0.0	ONLY_REF_SPLICE	EXD3^ENSG00000187609.16	chr9:137423114:-	GALNS^ENSG00000141012.13	chr16:88841971:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1376:18029:15951	.	YES_LDAS	0.0034	GT	1.5329	AG	1.6895	"[""INTERCHROMOSOMAL[chr9--chr16]""]"	chr9:137423114-chr16:88841971	False			0	Read count too low: 1 < 8	FAIL	1
EVX2--FRMD4A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EVX2^ENSG00000174279.4	chr2:176080277:-	FRMD4A^ENSG00000151474.23	chr10:13656943:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2202:18984:18445	.	NO_LDAS	0.0034	GT	1.2419	AG	1.231	"[""INTERCHROMOSOMAL[chr2--chr10]""]"	chr2:176080277-chr10:13656943	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EVA1C--RAD23B	1	0	1.0	0.0	ONLY_REF_SPLICE	EVA1C^ENSG00000166979.13	chr21:32504015:+	RAD23B^ENSG00000119318.13	chr9:107300141:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1465:46757:3158	.	YES_LDAS	0.0034	GT	1.8892	AG	1.7968	"[""INTERCHROMOSOMAL[chr21--chr9]""]"	chr21:32504015-chr9:107300141	False			0	Read count too low: 1 < 8	FAIL	1
EVA1C--OAZ1	1	0	1.0	0.0	ONLY_REF_SPLICE	EVA1C^ENSG00000166979.13	chr21:32413013:+	OAZ1^ENSG00000104904.12	chr19:2271385:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1253:3306:27217	.	YES_LDAS	0.0034	GT	1.8323	AG	1.7819	"[""INTERCHROMOSOMAL[chr21--chr19]""]"	chr21:32413013-chr19:2271385	False			0	Read count too low: 1 < 8	FAIL	1
ETV6--AC112243.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ETV6^ENSG00000139083.11	chr12:11752579:+	AC112243.1^ENSG00000279460.1	chr4:184988092:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1278:42647:16974	.	NO_LDAS	0.0034	GT	1.7465	AG	1.6402	"[""INTERCHROMOSOMAL[chr12--chr4]""]"	chr12:11752579-chr4:184988092	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ETFDH--THADA	1	0	1.0	0.0	ONLY_REF_SPLICE	ETFDH^ENSG00000171503.12	chr4:158672490:+	THADA^ENSG00000115970.19	chr2:43556555:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1167:15246:12812	.	NO_LDAS	0.0034	GT	1.8256	AG	1.8892	"[""INTERCHROMOSOMAL[chr4--chr2]""]"	chr4:158672490-chr2:43556555	False			0	Read count too low: 1 < 8	FAIL	1
ESYT2--PLVAP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ESYT2^ENSG00000117868.17	chr7:158739040:-	PLVAP^ENSG00000130300.9	chr19:17351691:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1345:31766:20743	.	NO_LDAS	0.0034	GT	1.9656	AG	1.5546	"[""INTERCHROMOSOMAL[chr7--chr19]""]"	chr7:158739040-chr19:17351691	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ESYT2--GNAO1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ESYT2^ENSG00000117868.17	chr7:158829069:-	GNAO1^ENSG00000087258.16	chr16:56347464:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1180:31135:4461	.	NO_LDAS	0.0017	GT	1.7232	AG	1.7232	"[""INTERCHROMOSOMAL[chr7--chr16]""]"	chr7:158829069-chr16:56347464	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ESYT2--AC026887.1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ESYT2^ENSG00000117868.17	chr7:158829069:-	AC026887.1^ENSG00000280086.1	chr10:11397123:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1180:31135:4461	.	NO_LDAS	0.0017	GT	1.7232	AG	1.8295	"[""INTERCHROMOSOMAL[chr7--chr10]""]"	chr7:158829069-chr10:11397123	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ERI3--NFYC	1	0	1.0	0.0	ONLY_REF_SPLICE	ERI3^ENSG00000117419.16	chr1:44284835:-	NFYC^ENSG00000066136.20	chr1:40747534:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2425:27826:11341	.	YES_LDAS	0.0034	GT	1.6402	AG	1.9656	"[""INTRACHROMOSOMAL[chr1:3.45Mb]""]"	chr1:44284835-chr1:40747534	False			0	Read count too low: 1 < 8	FAIL	1
ERGIC3--SMC3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ERGIC3^ENSG00000125991.20	chr20:35542223:+	SMC3^ENSG00000108055.10	chr10:110567706:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2345:12933:12504	.	NO_LDAS	0.0034	GT	1.3753	AG	1.3383	"[""INTERCHROMOSOMAL[chr20--chr10]""]"	chr20:35542223-chr10:110567706	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ERGIC3--SMARCD2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ERGIC3^ENSG00000125991.20	chr20:35542223:+	SMARCD2^ENSG00000108604.16	chr17:63842529:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1333:36402:14704	.	NO_LDAS	0.0017	GT	1.3753	AG	1.3753	"[""INTERCHROMOSOMAL[chr20--chr17]""]"	chr20:35542223-chr17:63842529	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ERBB3--TOB1-AS1	1	0	1.0	0.0	ONLY_REF_SPLICE	ERBB3^ENSG00000065361.16	chr12:56097940:+	TOB1-AS1^ENSG00000229980.5	chr17:50908836:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2277:20918:15965	.	YES_LDAS	0.0034	GT	1.9086	AG	1.9086	"[""INTERCHROMOSOMAL[chr12--chr17]""]"	chr12:56097940-chr17:50908836	False			0	Read count too low: 1 < 8	FAIL	1
ERBB3--SRRM1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ERBB3^ENSG00000065361.16	chr12:56101102:+	SRRM1^ENSG00000133226.17	chr1:24669513:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2292:3346:29473	.	NO_LDAS	0.0034	GT	1.6402	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr1]""]"	chr12:56101102-chr1:24669513	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EPS8--ATF7IP	1	0	1.0	0.0	ONLY_REF_SPLICE	EPS8^ENSG00000151491.14	chr12:15789161:-	ATF7IP^ENSG00000171681.12	chr12:14423909:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:18976:17086	.	NO_LDAS	0.0034	GT	1.6729	AG	1.8892	"[""INTRACHROMOSOMAL[chr12:1.12Mb]""]"	chr12:15789161-chr12:14423909	False			0	Read count too low: 1 < 8	FAIL	1
EPS15--ZNF362	1	0	1.0	0.0	ONLY_REF_SPLICE	EPS15^ENSG00000085832.17	chr1:51519199:-	ZNF362^ENSG00000160094.15	chr1:33281587:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:49653:9688	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTRACHROMOSOMAL[chr1:18.05Mb]""]"	chr1:51519199-chr1:33281587	False			0	Read count too low: 1 < 8	FAIL	1
EPS15--TCERG1	1	0	1.0	0.0	ONLY_REF_SPLICE	EPS15^ENSG00000085832.17	chr1:51519199:-	TCERG1^ENSG00000113649.12	chr5:146463551:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1457:30027:16470	.	NO_LDAS	0.0034	GT	1.8892	AG	1.2867	"[""INTERCHROMOSOMAL[chr1--chr5]""]"	chr1:51519199-chr5:146463551	False			0	Read count too low: 1 < 8	FAIL	1
EPS15--PPIA	1	0	1.0	0.0	ONLY_REF_SPLICE	EPS15^ENSG00000085832.17	chr1:51403419:-	PPIA^ENSG00000196262.15	chr7:44801287:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2398:43934:26012	.	YES_LDAS	0.0034	GT	1.7232	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr7]""]"	chr1:51403419-chr7:44801287	False			0	Read count too low: 1 < 8	FAIL	1
EPB41L1--TNFRSF14-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EPB41L1^ENSG00000088367.23	chr20:36190374:+	TNFRSF14-AS1^ENSG00000238164.6	chr1:2550651:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2293:23296:27315	.	NO_LDAS	0.0034	GT	1.7819	AG	1.9086	"[""INTERCHROMOSOMAL[chr20--chr1]""]"	chr20:36190374-chr1:2550651	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ENPP7--AC005838.1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ENPP7^ENSG00000182156.10	chr17:79739528:+	AC005838.1^ENSG00000223544.1	chr17:15588852:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1125:16242:5484	.	NO_LDAS	0.0017	GT	1.8062	AG	1.8256	"[""INTRACHROMOSOMAL[chr17:64.14Mb]""]"	chr17:79739528-chr17:15588852	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EMX2--ROR1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EMX2^ENSG00000170370.12	chr10:117543445:+	ROR1^ENSG00000185483.12	chr1:63774055:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2451:21015:6493	.	NO_LDAS	0.0034	GT	0.9183	AG	1.1589	"[""INTERCHROMOSOMAL[chr10--chr1]""]"	chr10:117543445-chr1:63774055	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EML4--KLHL24	1	0	1.0	0.0	ONLY_REF_SPLICE	EML4^ENSG00000143924.19	chr2:42256630:+	KLHL24^ENSG00000114796.16	chr3:183644086:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1331:8653:8623	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8295	"[""INTERCHROMOSOMAL[chr2--chr3]""]"	chr2:42256630-chr3:183644086	False			0	Read count too low: 1 < 8	FAIL	1
ELN--COQ3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ELN^ENSG00000049540.18	chr7:74036584:+	COQ3^ENSG00000132423.12	chr6:99394130:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2153:6525:14886	.	NO_LDAS	0.0034	GT	1.8295	AG	1.6729	"[""INTERCHROMOSOMAL[chr7--chr6]""]"	chr7:74036584-chr6:99394130	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ELF2--CDK11B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ELF2^ENSG00000109381.20	chr4:139084421:-	CDK11B^ENSG00000248333.9	chr1:1646169:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2235:19437:16988	.	NO_LDAS	0.0034	GC	1.2419	AG	1.8892	"[""INTERCHROMOSOMAL[chr4--chr1]""]"	chr4:139084421-chr1:1646169	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EIF4H--TTTY13	1	0	0.5	0.0	INCL_NON_REF_SPLICE	EIF4H^ENSG00000106682.16	chr7:74194878:+	TTTY13^ENSG00000184991.3	chrY:21566118:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1347:49419:3816	.	NO_LDAS	0.0017	GT	1.5301	AG	1.4256	"[""INTERCHROMOSOMAL[chr7--chrY]""]"	chr7:74194878-chrY:21566118	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
EIF4E3--ZBTB20	1	0	1.0	0.0	ONLY_REF_SPLICE	EIF4E3^ENSG00000163412.13	chr3:71710412:-	ZBTB20^ENSG00000181722.17	chr3:114500391:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1391:46846:6030	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9329	"[""INTRACHROMOSOMAL[chr3:42.56Mb]""]"	chr3:71710412-chr3:114500391	False			0	Read count too low: 1 < 8	FAIL	1
EIF4A1--EIF4A2	1	0	1.0	0.0	ONLY_REF_SPLICE	EIF4A1^ENSG00000161960.16	chr17:7574308:+	EIF4A2^ENSG00000156976.17	chr3:186784564:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1472:36645:12238	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8323	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr17--chr3]""]"	chr17:7574308-chr3:186784564	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
EIF3D--AC013268.4	1	0	0.25	0.0	INCL_NON_REF_SPLICE	EIF3D^ENSG00000100353.18	chr22:36512486:-	AC013268.4^ENSG00000283283.2	chr2:110025091:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1168:39581:9169	.	NO_LDAS	0.0009	GC	1.5058	AG	1.9329	"[""INTERCHROMOSOMAL[chr22--chr2]""]"	chr22:36512486-chr2:110025091	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EHD1--ZMYM3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EHD1^ENSG00000110047.18	chr11:64853897:-	ZMYM3^ENSG00000147130.14	chrX:71255141:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1121:38028:7964	.	NO_LDAS	0.0034	GT	1.9086	AG	0.9968	"[""INTERCHROMOSOMAL[chr11--chrX]""]"	chr11:64853897-chrX:71255141	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EFNB1--DUBR	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EFNB1^ENSG00000090776.6	chrX:68840286:+	DUBR^ENSG00000243701.7	chr3:107249215:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1325:25141:24737	.	NO_LDAS	0.0034	GC	1.7232	AG	1.7819	"[""INTERCHROMOSOMAL[chrX--chr3]""]"	chrX:68840286-chr3:107249215	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EFNA4--RPGR	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EFNA4^ENSG00000243364.8	chr1:155068955:+	RPGR^ENSG00000156313.15	chrX:38286087:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2240:26208:25662	.	NO_LDAS	0.0034	GC	1.7968	AG	0.9183	"[""INTERCHROMOSOMAL[chr1--chrX]""]"	chr1:155068955-chrX:38286087	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EFCAB14--ATPAF1	1	0	1.0	0.0	ONLY_REF_SPLICE	EFCAB14^ENSG00000159658.15	chr1:46683300:-	ATPAF1^ENSG00000123472.12	chr1:46665364:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1151:5441:1518	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8892	"[""INTRACHROMOSOMAL[chr1:0.00Mb]"",""NEIGHBORS[792]""]"	chr1:46683300-chr1:46665364	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
EEF1A1P16--ATP5F1B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	EEF1A1P16^ENSG00000213235.3	chr12:16992010:+	ATP5F1B^ENSG00000110955.9	chr12:56645199:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2207:7901:19230	.	NO_LDAS	0.0017	GT	1.8295	AG	1.7056	"[""INTRACHROMOSOMAL[chr12:39.65Mb]""]"	chr12:16992010-chr12:56645199	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EDF1--RER1	1	0	1.0	0.0	ONLY_REF_SPLICE	EDF1^ENSG00000107223.13	chr9:136863288:-	RER1^ENSG00000157916.20	chr1:2395784:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1353:14826:14186	.	NO_LDAS	0.0034	GT	1.8256	AG	1.9086	"[""INTERCHROMOSOMAL[chr9--chr1]""]"	chr9:136863288-chr1:2395784	False			0	Read count too low: 1 < 8	FAIL	1
EDF1--PLP2	1	0	1.0	0.0	ONLY_REF_SPLICE	EDF1^ENSG00000107223.13	chr9:136866181:-	PLP2^ENSG00000102007.11	chrX:49174335:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1392:31499:11313	.	YES_LDAS	0.0034	GT	1.7819	AG	1.9899	"[""INTERCHROMOSOMAL[chr9--chrX]""]"	chr9:136866181-chrX:49174335	False			0	Read count too low: 1 < 8	FAIL	1
EDEM1--HTR3C2P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EDEM1^ENSG00000134109.11	chr3:5213501:+	HTR3C2P^ENSG00000233576.1	chr3:184078184:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1333:47105:6423	.	NO_LDAS	0.0034	GT	1.8892	AG	1.7465	"[""INTRACHROMOSOMAL[chr3:178.86Mb]""]"	chr3:5213501-chr3:184078184	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
EDA--PHLDB2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	EDA^ENSG00000158813.18	chrX:69957278:+	PHLDB2^ENSG00000144824.21	chr3:111913319:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2154:39258:14438	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chrX--chr3]""]"	chrX:69957278-chr3:111913319	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ECSIT--AP001462.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ECSIT^ENSG00000130159.14	chr19:11507991:-	AP001462.1^ENSG00000269038.1	chr11:64778947:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1304:13685:11033	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8062	"[""INTERCHROMOSOMAL[chr19--chr11]""]"	chr19:11507991-chr11:64778947	False			0	Read count too low: 1 < 8	FAIL	1
EBF3--EBF1	1	0	1.0	0.0	ONLY_REF_SPLICE	EBF3^ENSG00000108001.15	chr10:129877768:-	EBF1^ENSG00000164330.17	chr5:158823317:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1458:6962:9281	.	YES_LDAS	0.0034	GT	1.9656	AG	1.7819	"[""INTERCHROMOSOMAL[chr10--chr5]""]"	chr10:129877768-chr5:158823317	False			0	Read count too low: 1 < 8	FAIL	1
EBF1--EBF2	1	0	1.0	0.0	ONLY_REF_SPLICE	EBF1^ENSG00000164330.17	chr5:158823176:-	EBF2^ENSG00000221818.9	chr8:25887972:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1334:11234:21920	.	YES_LDAS	0.0034	GT	1.9656	AG	1.6729	"[""INTERCHROMOSOMAL[chr5--chr8]""]"	chr5:158823176-chr8:25887972	False			0	Read count too low: 1 < 8	FAIL	1
DYRK1A--PLEKHM3	1	0	0.17	0.0	ONLY_REF_SPLICE	DYRK1A^ENSG00000157540.22	chr21:37428908:+	PLEKHM3^ENSG00000178385.15	chr2:207908577:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1285:16654:7095	.	NO_LDAS	0.0006	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr21--chr2]""]"	chr21:37428908-chr2:207908577	False			0	Read count too low: 1 < 8	FAIL	1
DYNC2I1--CEP295	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DYNC2I1^ENSG00000126870.16	chr7:158906091:+	CEP295^ENSG00000166004.15	chr11:93723077:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1196:4438:7292	.	NO_LDAS	0.0034	GT	1.8892	AG	1.7819	"[""INTERCHROMOSOMAL[chr7--chr11]""]"	chr7:158906091-chr11:93723077	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DUXAP10--AS3MT	1	0	0.17	0.0	INCL_NON_REF_SPLICE	DUXAP10^ENSG00000244306.11	chr14:19303402:-	AS3MT^ENSG00000214435.8	chr10:102869591:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2142:6259:22747	.	NO_LDAS	0.0006	GT	1.1033	AG	1.8892	"[""INTERCHROMOSOMAL[chr14--chr10]""]"	chr14:19303402-chr10:102869591	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DUXAP10--AS3MT	1	0	0.17	0.0	INCL_NON_REF_SPLICE	DUXAP10^ENSG00000244306.11	chr14:19303402:-	AS3MT^ENSG00000214435.8	chr10:102869555:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2142:6259:22747	.	NO_LDAS	0.0006	GT	1.1033	AG	1.8892	"[""INTERCHROMOSOMAL[chr14--chr10]""]"	chr14:19303402-chr10:102869555	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DUXAP10--AS3MT	1	0	0.17	0.0	INCL_NON_REF_SPLICE	DUXAP10^ENSG00000244306.11	chr14:19303402:-	AS3MT^ENSG00000214435.8	chr10:102869519:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2142:6259:22747	.	NO_LDAS	0.0006	GT	1.1033	AG	1.8892	"[""INTERCHROMOSOMAL[chr14--chr10]""]"	chr14:19303402-chr10:102869519	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DUT--DUTP7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DUT^ENSG00000128951.14	chr15:48336090:+	DUTP7^ENSG00000250473.1	chr4:51865247:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1487:8774:3312	.	NO_LDAS	0.0034	GT	1.5656	AG	1.8256	"[""INTERCHROMOSOMAL[chr15--chr4]""]"	chr15:48336090-chr4:51865247	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DUSP16--SPAG9	1	0	1.0	0.0	ONLY_REF_SPLICE	DUSP16^ENSG00000111266.9	chr12:12500519:-	SPAG9^ENSG00000008294.21	chr17:50966387:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1230:30367:17927	.	NO_LDAS	0.0034	GT	1.9656	AG	1.4566	"[""INTERCHROMOSOMAL[chr12--chr17]""]"	chr12:12500519-chr17:50966387	False			0	Read count too low: 1 < 8	FAIL	1
DUS4L--NDUFS7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DUS4L^ENSG00000105865.11	chr7:107563557:+	NDUFS7^ENSG00000115286.20	chr19:1395194:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1405:47048:9800	.	NO_LDAS	0.0034	GT	0.6998	AG	1.7819	"[""INTERCHROMOSOMAL[chr7--chr19]""]"	chr7:107563557-chr19:1395194	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DTX2P1--DTX1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DTX2P1^ENSG00000186704.9	chr7:77003365:+	DTX1^ENSG00000135144.7	chr12:113095325:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1338:43448:17689	.	NO_LDAS	0.0034	GT	1.5628	AG	1.6402	"[""INTERCHROMOSOMAL[chr7--chr12]""]"	chr7:77003365-chr12:113095325	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DSEL--SERBP1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	DSEL^ENSG00000171451.14	chr18:67516630:-	SERBP1^ENSG00000142864.15	chr1:67430046:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2493:20481:22131	.	NO_LDAS	0.0011	GT	1.231	AG	1.6895	"[""INTERCHROMOSOMAL[chr18--chr1]""]"	chr18:67516630-chr1:67430046	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DSC3--PPP2R5A	1	0	1.0	0.0	ONLY_REF_SPLICE	DSC3^ENSG00000134762.17	chr18:31001618:-	PPP2R5A^ENSG00000066027.12	chr1:212356626:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1323:7189:25732	.	NO_LDAS	0.0034	GT	1.6895	AG	1.8892	"[""INTERCHROMOSOMAL[chr18--chr1]""]"	chr18:31001618-chr1:212356626	False			0	Read count too low: 1 < 8	FAIL	1
DRC3--AP3D1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DRC3^ENSG00000171962.18	chr17:18005929:+	AP3D1^ENSG00000065000.19	chr19:2112956:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1439:36232:29599	.	NO_LDAS	0.0034	GT	1.7465	AG	1.9899	"[""INTERCHROMOSOMAL[chr17--chr19]""]"	chr17:18005929-chr19:2112956	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DPYS--YTHDC1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	DPYS^ENSG00000147647.13	chr8:104330314:-	YTHDC1^ENSG00000083896.13	chr4:68337221:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1265:26532:3522	.	NO_LDAS	0.0017	GT	1.5546	AG	0.971	"[""INTERCHROMOSOMAL[chr8--chr4]""]"	chr8:104330314-chr4:68337221	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DPP9--THY1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DPP9^ENSG00000142002.18	chr19:4679835:-	THY1^ENSG00000154096.14	chr11:119417999:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1391:11509:26292	.	NO_LDAS	0.0034	GT	1.8295	AG	1.8892	"[""INTERCHROMOSOMAL[chr19--chr11]""]"	chr19:4679835-chr11:119417999	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DPP4--FAP	1	0	1.0	0.0	ONLY_REF_SPLICE	DPP4^ENSG00000197635.11	chr2:161994961:-	FAP^ENSG00000078098.14	chr2:162171080:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2257:3524:7866	.	NO_LDAS	0.0034	GT	1.9899	AG	1.9899	"[""INTRACHROMOSOMAL[chr2:0.10Mb]"",""LOCAL_REARRANGEMENT:-:[96290]""]"	chr2:161994961-chr2:162171080	False			0	Read count too low: 1 < 8	FAIL	1
DOCK4--JAK2	1	0	1.0	0.0	ONLY_REF_SPLICE	DOCK4^ENSG00000128512.23	chr7:112206102:-	JAK2^ENSG00000096968.14	chr9:5021963:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1425:50511:13667	.	YES_LDAS	0.0034	GT	1.8323	AG	1.8892	"[""INTERCHROMOSOMAL[chr7--chr9]""]"	chr7:112206102-chr9:5021963	False			0	Read count too low: 1 < 8	FAIL	1
DNTTIP1--TNNC2	1	0	1.0	0.0	ONLY_REF_SPLICE	DNTTIP1^ENSG00000101457.13	chr20:45795443:+	TNNC2^ENSG00000101470.10	chr20:45824834:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1108:46806:20001	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8256	"[""INTRACHROMOSOMAL[chr20:0.01Mb]"",""LOCAL_INVERSION:+:-:[11787]""]"	chr20:45795443-chr20:45824834	False			0	Read count too low: 1 < 8	FAIL	1
DNAJC7--SYTL5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DNAJC7^ENSG00000168259.17	chr17:41983976:-	SYTL5^ENSG00000147041.12	chrX:38120358:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1172:19437:8861	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7819	"[""INTERCHROMOSOMAL[chr17--chrX]""]"	chr17:41983976-chrX:38120358	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DNAJC25--GNG10	1	0	1.0	0.0	ONLY_REF_SPLICE	DNAJC25^ENSG00000059769.20	chr9:111631743:+	GNG10^ENSG00000242616.4	chr9:111666815:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1139:12633:24877	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9329	"[""ChimerSeq"",""INTRACHROMOSOMAL[chr9:0.01Mb]"",""NEIGHBORS[7254]""]"	chr9:111631743-chr9:111666815	False			0	Read count too low: 1 < 8	FAIL	1
DNAJC11--FLI1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DNAJC11^ENSG00000007923.16	chr1:6667770:-	FLI1^ENSG00000151702.17	chr11:128693949:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1445:51651:9113	.	NO_LDAS	0.0034	GT	1.7819	AG	0.9968	"[""INTERCHROMOSOMAL[chr1--chr11]""]"	chr1:6667770-chr11:128693949	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DNAJB6--PRSS57	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DNAJB6^ENSG00000105993.15	chr7:157410501:+	PRSS57^ENSG00000185198.12	chr19:685773:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1211:39775:28142	.	NO_LDAS	0.0034	GT	0.9056	AG	1.6402	"[""INTERCHROMOSOMAL[chr7--chr19]""]"	chr7:157410501-chr19:685773	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DNAJB14--SELENOI	1	0	1.0	0.0	ONLY_REF_SPLICE	DNAJB14^ENSG00000164031.17	chr4:99946439:-	SELENOI^ENSG00000138018.18	chr2:26364302:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2202:4770:15937	.	YES_LDAS	0.0034	GT	1.3996	AG	1.9086	"[""INTERCHROMOSOMAL[chr4--chr2]""]"	chr4:99946439-chr2:26364302	False			0	Read count too low: 1 < 8	FAIL	1
DNAH7--BLNK	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DNAH7^ENSG00000118997.14	chr2:195905085:-	BLNK^ENSG00000095585.17	chr10:96209897:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1358:10392:24387	.	NO_LDAS	0.0034	GT	1.9086	AG	1.8295	"[""INTERCHROMOSOMAL[chr2--chr10]""]"	chr2:195905085-chr10:96209897	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DMXL1--SPDL1	1	0	1.0	0.0	ONLY_REF_SPLICE	DMXL1^ENSG00000172869.14	chr5:119116336:+	SPDL1^ENSG00000040275.17	chr5:169591048:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1120:11776:1140	.	NO_LDAS	0.0034	GT	1.8892	AG	1.6729	"[""INTRACHROMOSOMAL[chr5:50.33Mb]""]"	chr5:119116336-chr5:169591048	False			0	Read count too low: 1 < 8	FAIL	1
DMPK--PRKCZ	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DMPK^ENSG00000104936.19	chr19:45777754:-	PRKCZ^ENSG00000067606.17	chr1:2173927:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1318:42801:13849	.	NO_LDAS	0.0034	GT	1.3383	AG	1.9219	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:45777754-chr1:2173927	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DMD--TOPAZ1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DMD^ENSG00000198947.17	chrX:31203957:-	TOPAZ1^ENSG00000173769.4	chr3:44243697:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1125:3298:15545	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chrX--chr3]""]"	chrX:31203957-chr3:44243697	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DMD--CPXM2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DMD^ENSG00000198947.17	chrX:33020139:-	CPXM2^ENSG00000121898.13	chr10:123746838:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2157:50422:26236	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9656	"[""INTERCHROMOSOMAL[chrX--chr10]""]"	chrX:33020139-chr10:123746838	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
DLK2--SERINC2	1	0	1.0	0.0	ONLY_REF_SPLICE	DLK2^ENSG00000171462.15	chr6:43455987:-	SERINC2^ENSG00000168528.12	chr1:31432967:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1125:38934:27049	.	YES_LDAS	0.0034	GT	1.7465	AG	1.8892	"[""INTERCHROMOSOMAL[chr6--chr1]""]"	chr6:43455987-chr1:31432967	False			0	Read count too low: 1 < 8	FAIL	1
DLG5--ABCC8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DLG5^ENSG00000151208.17	chr10:77820183:-	ABCC8^ENSG00000006071.15	chr11:17399104:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2313:7739:24274	.	NO_LDAS	0.0034	GT	1.1033	AG	1.9219	"[""INTERCHROMOSOMAL[chr10--chr11]""]"	chr10:77820183-chr11:17399104	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DLG1--DSTN	1	0	1.0	0.0	ONLY_REF_SPLICE	DLG1^ENSG00000075711.21	chr3:197161640:-	DSTN^ENSG00000125868.16	chr20:17600738:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1152:27309:26699	.	YES_LDAS	0.0034	GT	1.5329	AG	1.9329	"[""INTERCHROMOSOMAL[chr3--chr20]""]"	chr3:197161640-chr20:17600738	False			0	Read count too low: 1 < 8	FAIL	1
DKK3--SPTLC2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DKK3^ENSG00000050165.18	chr11:12009354:-	SPTLC2^ENSG00000100596.7	chr14:77616650:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1279:25124:2345	.	NO_LDAS	0.0034	GT	1.6729	AG	1.8295	"[""INTERCHROMOSOMAL[chr11--chr14]""]"	chr11:12009354-chr14:77616650	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DKC1--GOLGA8CP	1	0	0.17	0.0	INCL_NON_REF_SPLICE	DKC1^ENSG00000130826.18	chrX:154776205:+	GOLGA8CP^ENSG00000181984.11	chr15:20574018:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1168:8208:10458	.	NO_LDAS	0.0006	GT	1.5628	AG	1.9086	"[""INTERCHROMOSOMAL[chrX--chr15]""]"	chrX:154776205-chr15:20574018	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DKC1--AL161935.3	1	0	0.17	0.0	INCL_NON_REF_SPLICE	DKC1^ENSG00000130826.18	chrX:154776205:+	AL161935.3^ENSG00000286694.1	chr10:31608788:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1168:8208:10458	.	NO_LDAS	0.0006	GT	1.5628	AG	1.5628	"[""INTERCHROMOSOMAL[chrX--chr10]""]"	chrX:154776205-chr10:31608788	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DIP2B--SMG6	1	0	1.0	0.0	ONLY_REF_SPLICE	DIP2B^ENSG00000066084.13	chr12:50505240:+	SMG6^ENSG00000070366.14	chr17:2068931:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1216:1890:2709	.	NO_LDAS	0.0034	GT	1.8295	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr17]""]"	chr12:50505240-chr17:2068931	False			0	Read count too low: 1 < 8	FAIL	1
DIP2B--FBXO24	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DIP2B^ENSG00000066084.13	chr12:50675451:+	FBXO24^ENSG00000106336.13	chr7:100600720:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2143:41264:10767	.	NO_LDAS	0.0034	GT	1.5656	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr7]""]"	chr12:50675451-chr7:100600720	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DIDO1--ATP5F1A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DIDO1^ENSG00000101191.17	chr20:62907143:-	ATP5F1A^ENSG00000152234.16	chr18:46088108:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1331:4115:20855	.	NO_LDAS	0.0034	GT	1.8295	AG	1.3996	"[""INTERCHROMOSOMAL[chr20--chr18]""]"	chr20:62907143-chr18:46088108	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DIAPH2--SH3KBP1	1	0	1.0	0.0	ONLY_REF_SPLICE	DIAPH2^ENSG00000147202.18	chrX:96685190:+	SH3KBP1^ENSG00000147010.18	chrX:19595000:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1140:15732:12728	.	YES_LDAS	0.0034	GT	1.6402	AG	1.5058	"[""INTRACHROMOSOMAL[chrX:76.80Mb]""]"	chrX:96685190-chrX:19595000	False			0	Read count too low: 1 < 8	FAIL	1
DIAPH2--DMD	1	0	1.0	0.0	ONLY_REF_SPLICE	DIAPH2^ENSG00000147202.18	chrX:97429745:+	DMD^ENSG00000198947.17	chrX:32645152:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:44176:1967	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""INTRACHROMOSOMAL[chrX:63.35Mb]""]"	chrX:97429745-chrX:32645152	False			0	Read count too low: 1 < 8	FAIL	1
DIABLO--PBX4	1	0	0.5	0.0	ONLY_REF_SPLICE	DIABLO^ENSG00000184047.20	chr12:122220530:-	PBX4^ENSG00000105717.14	chr19:19599365:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1134:46862:13429	.	NO_LDAS	0.0017	GT	1.9329	AG	1.9219	"[""INTERCHROMOSOMAL[chr12--chr19]""]"	chr12:122220530-chr19:19599365	False			0	Read count too low: 1 < 8	FAIL	1
DESI2--ADSS2	1	0	1.0	0.0	ONLY_REF_SPLICE	DESI2^ENSG00000121644.19	chr1:244653355:+	ADSS2^ENSG00000035687.10	chr1:244437768:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1113:19914:9099	.	NO_LDAS	0.0034	GT	1.9656	AG	1.7819	"[""INTRACHROMOSOMAL[chr1:0.20Mb]""]"	chr1:244653355-chr1:244437768	False			0	Read count too low: 1 < 8	FAIL	1
DEPDC1--COL4A5	1	0	0.33	0.0	INCL_NON_REF_SPLICE	DEPDC1^ENSG00000024526.17	chr1:68482411:-	COL4A5^ENSG00000188153.14	chrX:108582884:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2252:34638:23195	.	NO_LDAS	0.0011	GT	1.8892	AG	1.7056	"[""INTERCHROMOSOMAL[chr1--chrX]""]"	chr1:68482411-chrX:108582884	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DENND3--PTGR2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DENND3^ENSG00000105339.11	chr8:141136791:+	PTGR2^ENSG00000140043.11	chr14:73886783:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1133:19356:29403	.	NO_LDAS	0.0034	GT	1.9329	AG	1.231	"[""INTERCHROMOSOMAL[chr8--chr14]""]"	chr8:141136791-chr14:73886783	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DENND2A--SNX19	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DENND2A^ENSG00000146966.13	chr7:140673985:-	SNX19^ENSG00000120451.11	chr11:130906130:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2438:30512:17815	.	NO_LDAS	0.0034	GT	1.8295	AG	1.9086	"[""INTERCHROMOSOMAL[chr7--chr11]""]"	chr7:140673985-chr11:130906130	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DEGS1--SLF2	1	0	1.0	0.0	ONLY_REF_SPLICE	DEGS1^ENSG00000143753.13	chr1:224183418:+	SLF2^ENSG00000119906.13	chr10:100915999:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1255:32114:22663	.	NO_LDAS	0.0034	GT	1.7968	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr10]""]"	chr1:224183418-chr10:100915999	False			0	Read count too low: 1 < 8	FAIL	1
DDX46--CAMLG	1	0	1.0	0.0	ONLY_REF_SPLICE	DDX46^ENSG00000145833.16	chr5:134764092:+	CAMLG^ENSG00000164615.6	chr5:134741063:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1217:34096:22565	.	NO_LDAS	0.0034	GT	1.8892	AG	1.3753	"[""DEEPEST2019"",""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr5:0.01Mb]"",""LOCAL_REARRANGEMENT:+:[6614]""]"	chr5:134764092-chr5:134741063	False			0	Read count too low: 1 < 8	FAIL	1
DDX41--PLA2R1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DDX41^ENSG00000183258.12	chr5:177516119:-	PLA2R1^ENSG00000153246.13	chr2:159937896:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1278:35035:1070	.	NO_LDAS	0.0034	GT	1.7968	AG	1.8062	"[""INTERCHROMOSOMAL[chr5--chr2]""]"	chr5:177516119-chr2:159937896	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DDX39B--AL360270.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DDX39B^ENSG00000198563.14	chr6:31538763:-	AL360270.1^ENSG00000232811.1	chr1:110944890:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2312:40884:19412	.	NO_LDAS	0.0034	GT	1.9656	AG	1.053	"[""INTERCHROMOSOMAL[chr6--chr1]""]"	chr6:31538763-chr1:110944890	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DDX19A--CDS2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DDX19A^ENSG00000168872.17	chr16:70364645:+	CDS2^ENSG00000101290.14	chr20:5197411:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2468:40139:4307	.	NO_LDAS	0.0034	GT	1.7819	AG	1.7819	"[""INTERCHROMOSOMAL[chr16--chr20]""]"	chr16:70364645-chr20:5197411	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DDX1--PNPT1	1	0	0.5	0.0	ONLY_REF_SPLICE	DDX1^ENSG00000079785.16	chr2:15602631:+	PNPT1^ENSG00000138035.15	chr2:55644720:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1437:9939:14242	.	YES_LDAS	0.0017	GT	1.4566	AG	1.9656	"[""INTRACHROMOSOMAL[chr2:40.00Mb]""]"	chr2:15602631-chr2:55644720	False			0	Read count too low: 1 < 8	FAIL	1
DDHD1--HNRNPM	1	0	0.09	0.0	INCL_NON_REF_SPLICE	DDHD1^ENSG00000100523.16	chr14:53153172:-	HNRNPM^ENSG00000099783.12	chr19:8445029:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1311:45988:9786	.	NO_LDAS	0.0003	GT	1.2419	AG	1.5546	"[""INTERCHROMOSOMAL[chr14--chr19]""]"	chr14:53153172-chr19:8445029	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DDA1--SKIL	1	0	1.0	0.0	ONLY_REF_SPLICE	DDA1^ENSG00000130311.11	chr19:17309657:+	SKIL^ENSG00000136603.14	chr3:170359699:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2489:12617:27820	.	YES_LDAS	0.0034	GT	1.5329	AG	1.3383	"[""INTERCHROMOSOMAL[chr19--chr3]""]"	chr19:17309657-chr3:170359699	False			0	Read count too low: 1 < 8	FAIL	1
DCUN1D2--TRAP1	1	0	1.0	0.0	ONLY_REF_SPLICE	DCUN1D2^ENSG00000150401.15	chr13:113490667:-	TRAP1^ENSG00000126602.11	chr16:3690985:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1246:39104:5932	.	YES_LDAS	0.0034	GT	1.4256	AG	1.8892	"[""INTERCHROMOSOMAL[chr13--chr16]""]"	chr13:113490667-chr16:3690985	False			0	Read count too low: 1 < 8	FAIL	1
DCP2--ZNF347	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DCP2^ENSG00000172795.17	chr5:113021076:+	ZNF347^ENSG00000197937.13	chr19:53142309:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2248:20109:25325	.	NO_LDAS	0.0034	GT	1.5546	AG	1.5546	"[""INTERCHROMOSOMAL[chr5--chr19]""]"	chr5:113021076-chr19:53142309	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DCHS2--PDGFC	1	0	1.0	0.0	ONLY_REF_SPLICE	DCHS2^ENSG00000197410.14	chr4:154489304:-	PDGFC^ENSG00000145431.11	chr4:156861489:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:24526:23083	.	YES_LDAS	0.0034	GT	1.9086	AG	1.9656	"[""INTRACHROMOSOMAL[chr4:2.27Mb]""]"	chr4:154489304-chr4:156861489	False			0	Read count too low: 1 < 8	FAIL	1
DCAF10--SPECC1L	1	0	1.0	0.0	ONLY_REF_SPLICE	DCAF10^ENSG00000122741.16	chr9:37819401:+	SPECC1L^ENSG00000100014.20	chr22:24302195:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2176:12585:7053	.	YES_LDAS	0.0034	GT	1.6895	AG	1.7465	"[""INTERCHROMOSOMAL[chr9--chr22]""]"	chr9:37819401-chr22:24302195	False			0	Read count too low: 1 < 8	FAIL	1
DBP--TRAK1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	DBP^ENSG00000105516.11	chr19:48635580:-	TRAK1^ENSG00000182606.17	chr3:42210096:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2286:9810:7207	.	NO_LDAS	0.0034	GT	1.4295	AG	0.9183	"[""INTERCHROMOSOMAL[chr19--chr3]""]"	chr19:48635580-chr3:42210096	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DACT1--AC138028.2	1	0	0.14	0.0	INCL_NON_REF_SPLICE	DACT1^ENSG00000165617.15	chr14:58646593:+	AC138028.2^ENSG00000224888.4	chr16:88738176:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1465:32705:21192	.	NO_LDAS	0.0005	GC	1.2419	AG	1.5546	"[""INTERCHROMOSOMAL[chr14--chr16]""]"	chr14:58646593-chr16:88738176	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
DAB2--SNAP23	1	0	1.0	0.0	ONLY_REF_SPLICE	DAB2^ENSG00000153071.15	chr5:39390444:-	SNAP23^ENSG00000092531.10	chr15:42515237:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1247:2084:23840	.	NO_LDAS	0.0034	GT	1.5301	AG	1.5329	"[""INTERCHROMOSOMAL[chr5--chr15]""]"	chr5:39390444-chr15:42515237	False			0	Read count too low: 1 < 8	FAIL	1
DAAM1--ABHD12B	1	0	1.0	0.0	ONLY_REF_SPLICE	DAAM1^ENSG00000100592.16	chr14:59325730:+	ABHD12B^ENSG00000131969.15	chr14:50888824:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2427:3427:25381	.	YES_LDAS	0.0034	GT	1.7465	AG	1.9656	"[""INTRACHROMOSOMAL[chr14:8.28Mb]""]"	chr14:59325730-chr14:50888824	False			0	Read count too low: 1 < 8	FAIL	1
CYP4F22--CYP4F8	1	0	1.0	0.0	ONLY_REF_SPLICE	CYP4F22^ENSG00000171954.13	chr19:15550756:+	CYP4F8^ENSG00000186526.13	chr19:15629193:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2466:24008:9800	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9329	"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr19:0.06Mb]"",""NEIGHBORS[62901]""]"	chr19:15550756-chr19:15629193	False			0	Excluded annotation pattern: DGD_PARALOGS	FAIL	1
CYP27B1--MMP2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CYP27B1^ENSG00000111012.10	chr12:57762987:-	MMP2^ENSG00000087245.13	chr16:55491801:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1154:38885:23153	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr12--chr16]""]"	chr12:57762987-chr16:55491801	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CYP20A1--SPECC1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CYP20A1^ENSG00000119004.16	chr2:203245895:+	SPECC1^ENSG00000128487.18	chr17:20315855:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1188:37324:9155	.	NO_LDAS	0.0034	GT	1.7232	AG	1.9656	"[""INTERCHROMOSOMAL[chr2--chr17]""]"	chr2:203245895-chr17:20315855	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
CUX1--MACROH2A2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CUX1^ENSG00000257923.12	chr7:102170554:+	MACROH2A2^ENSG00000099284.15	chr10:70097342:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1457:35836:15236	.	NO_LDAS	0.0034	GT	1.8892	AG	1.4716	"[""INTERCHROMOSOMAL[chr7--chr10]""]"	chr7:102170554-chr10:70097342	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CTTN--VEGFA	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CTTN^ENSG00000085733.16	chr11:70435867:+	VEGFA^ENSG00000112715.25	chr6:43771177:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1312:30375:19819	.	NO_LDAS	0.0034	GC	1.4566	AG	1.3996	"[""INTERCHROMOSOMAL[chr11--chr6]""]"	chr11:70435867-chr6:43771177	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CTSC--RAB38	1	0	1.0	0.0	ONLY_REF_SPLICE	CTSC^ENSG00000109861.17	chr11:88300530:-	RAB38^ENSG00000123892.12	chr11:88149955:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2185:14357:18669	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8062	"[""GTEx_recurrent_StarF2019"",""Babiceanu_Normal"",""ChimerSeq"",""Greger_Normal"",""INTRACHROMOSOMAL[chr11:0.09Mb]"",""NEIGHBORS[89626]""]"	chr11:88300530-chr11:88149955	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
CTDSPL2--AOPEP	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CTDSPL2^ENSG00000137770.14	chr15:44528173:+	AOPEP^ENSG00000148120.17	chr9:95005091:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1249:13548:10066	.	NO_LDAS	0.0034	GT	1.4295	AG	1.1589	"[""INTERCHROMOSOMAL[chr15--chr9]""]"	chr15:44528173-chr9:95005091	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CTDSPL--XRN1	1	0	1.0	0.0	ONLY_REF_SPLICE	CTDSPL^ENSG00000144677.15	chr3:37862278:+	XRN1^ENSG00000114127.11	chr3:142432893:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1152:23887:7263	.	NO_LDAS	0.0034	GT	1.4566	AG	1.8892	"[""INTRACHROMOSOMAL[chr3:104.32Mb]""]"	chr3:37862278-chr3:142432893	False			0	Read count too low: 1 < 8	FAIL	1
CTDSP1--DNM3OS	1	0	1.0	0.0	ONLY_REF_SPLICE	CTDSP1^ENSG00000144579.8	chr2:218402405:+	DNM3OS^ENSG00000230630.5	chr1:172144437:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1169:33465:14382	.	YES_LDAS	0.0034	GT	1.7968	AG	1.9656	"[""GTEx_recurrent_StarF2019"",""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:218402405-chr1:172144437	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
CTCF--PBX4	1	0	0.5	0.0	ONLY_REF_SPLICE	CTCF^ENSG00000102974.16	chr16:67635632:+	PBX4^ENSG00000105717.14	chr19:19599365:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1134:46862:13429	.	NO_LDAS	0.0017	GT	1.9329	AG	1.9219	"[""INTERCHROMOSOMAL[chr16--chr19]""]"	chr16:67635632-chr19:19599365	False			0	Read count too low: 1 < 8	FAIL	1
CSRNP2--AC124319.1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	CSRNP2^ENSG00000110925.7	chr12:51083229:-	AC124319.1^ENSG00000262979.1	chr17:80316556:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1189:40584:22537	.	NO_LDAS	0.0017	GT	1.6049	AG	1.5058	"[""INTERCHROMOSOMAL[chr12--chr17]""]"	chr12:51083229-chr17:80316556	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CSNK1G2--CSNK1G3	1	0	1.0	0.0	ONLY_REF_SPLICE	CSNK1G2^ENSG00000133275.16	chr19:1969959:+	CSNK1G3^ENSG00000151292.17	chr5:123553107:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1127:40487:27890	.	YES_LDAS	0.0034	GT	1.8323	AG	1.6402	"[""INTERCHROMOSOMAL[chr19--chr5]""]"	chr19:1969959-chr5:123553107	False			0	Read count too low: 1 < 8	FAIL	1
CSK--RAP2CP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CSK^ENSG00000103653.16	chr15:74802665:+	RAP2CP1^ENSG00000270938.1	chr14:103279602:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1244:8645:10262	.	NO_LDAS	0.0034	GT	1.2366	AG	1.5058	"[""INTERCHROMOSOMAL[chr15--chr14]""]"	chr15:74802665-chr14:103279602	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CSAD--NODAL	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CSAD^ENSG00000139631.19	chr12:53159887:-	NODAL^ENSG00000156574.10	chr10:70432203:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2129:11218:22201	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr10]""]"	chr12:53159887-chr10:70432203	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CRTC3--AL138701.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CRTC3^ENSG00000140577.16	chr15:90629532:+	AL138701.2^ENSG00000287923.1	chr13:106062367:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1129:23547:7656	.	NO_LDAS	0.0034	GT	1.7465	AG	1.9899	"[""INTERCHROMOSOMAL[chr15--chr13]""]"	chr15:90629532-chr13:106062367	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CRPPA--BZW2	1	0	1.0	0.0	ONLY_REF_SPLICE	CRPPA^ENSG00000214960.11	chr7:16216066:-	BZW2^ENSG00000136261.15	chr7:16665437:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1164:33538:3634	.	NO_LDAS	0.0034	GT	1.8256	AG	1.2729	"[""INTRACHROMOSOMAL[chr7:0.14Mb]""]"	chr7:16216066-chr7:16665437	False			0	Read count too low: 1 < 8	FAIL	1
CREBL2--KLHL24	1	0	0.5	0.0	ONLY_REF_SPLICE	CREBL2^ENSG00000111269.3	chr12:12612187:+	KLHL24^ENSG00000114796.16	chr3:183644086:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1426:47210:11061	.	YES_LDAS	0.0017	GT	1.7819	AG	1.8295	"[""INTERCHROMOSOMAL[chr12--chr3]""]"	chr12:12612187-chr3:183644086	False			0	Read count too low: 1 < 8	FAIL	1
CREBL2--AC073332.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CREBL2^ENSG00000111269.3	chr12:12612187:+	AC073332.1^ENSG00000237773.7	chr7:17291347:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2312:18660:19566	.	YES_LDAS	0.0034	GT	1.7819	AG	1.7232	"[""INTERCHROMOSOMAL[chr12--chr7]""]"	chr12:12612187-chr7:17291347	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
CRACDL--RCOR3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CRACDL^ENSG00000196872.12	chr2:98822761:-	RCOR3^ENSG00000117625.14	chr1:211313631:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1258:30982:12995	.	NO_LDAS	0.0034	GC	1.231	AG	1.3383	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:98822761-chr1:211313631	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CPTP--PRNCR1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	CPTP^ENSG00000224051.7	chr1:1328642:+	PRNCR1^ENSG00000282961.1	chr8:127086691:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2422:15716:23938	.	NO_LDAS	0.0017	GT	1.9086	AG	1.6895	"[""INTERCHROMOSOMAL[chr1--chr8]""]"	chr1:1328642-chr8:127086691	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CPLANE1--SBNO1	1	0	1.0	0.0	ONLY_REF_SPLICE	CPLANE1^ENSG00000197603.16	chr5:37125244:-	SBNO1^ENSG00000139697.14	chr12:123328895:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1401:37235:16147	.	YES_LDAS	0.0034	GT	1.7056	AG	1.6402	"[""INTERCHROMOSOMAL[chr5--chr12]""]"	chr5:37125244-chr12:123328895	False			0	Read count too low: 1 < 8	FAIL	1
COPB1--RRAS2	1	0	0.5	0.0	ONLY_REF_SPLICE	COPB1^ENSG00000129083.13	chr11:14453225:-	RRAS2^ENSG00000133818.14	chr11:14295855:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1209:51692:9127	.	YES_LDAS	0.0017	GT	1.8295	AG	1.8295	"[""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr11:0.08Mb]"",""NEIGHBORS[78934]""]"	chr11:14453225-chr11:14295855	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
COL5A2--BDKRB2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	COL5A2^ENSG00000204262.14	chr2:189052772:-	BDKRB2^ENSG00000168398.7	chr14:96243460:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1217:27600:29053	.	NO_LDAS	0.0034	GT	1.9086	AG	1.8256	"[""INTERCHROMOSOMAL[chr2--chr14]""]"	chr2:189052772-chr14:96243460	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
COL25A1--COL11A1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	COL25A1^ENSG00000188517.16	chr4:109010353:-	COL11A1^ENSG00000060718.22	chr1:102946884:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1411:39565:27553	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8062	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr4--chr1]""]"	chr4:109010353-chr1:102946884	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
COL23A1--AL162457.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	COL23A1^ENSG00000050767.18	chr5:178560682:-	AL162457.1^ENSG00000179253.3	chr20:61718230:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:11768:27946	.	NO_LDAS	0.0034	GT	1.7465	AG	1.8323	"[""INTERCHROMOSOMAL[chr5--chr20]""]"	chr5:178560682-chr20:61718230	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
COL15A1--RBMS3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	COL15A1^ENSG00000204291.11	chr9:98985774:+	RBMS3^ENSG00000144642.22	chr3:29281703:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2184:29817:12882	.	YES_LDAS	0.0034	GT	1.7465	AG	1.6895	"[""INTERCHROMOSOMAL[chr9--chr3]""]"	chr9:98985774-chr3:29281703	False			0	Read count too low: 1 < 8	FAIL	1
COL15A1--FLOT1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	COL15A1^ENSG00000204291.11	chr9:99003519:+	FLOT1^ENSG00000137312.15	chr6:30740513:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1153:46644:25886	.	NO_LDAS	0.0017	GC	1.5219	AG	1.8892	"[""INTERCHROMOSOMAL[chr9--chr6]""]"	chr9:99003519-chr6:30740513	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CNTNAP3C--BX005040.4	1	0	1.0	0.0	ONLY_REF_SPLICE	CNTNAP3C^ENSG00000283378.1	chr9:61453030:+	BX005040.4^ENSG00000283541.1	chr9:61104578:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1186:29137:24204	.	YES_LDAS	0.0034	GT	1.8295	AG	1.9656	"[""INTRACHROMOSOMAL[chr9:0.22Mb]""]"	chr9:61453030-chr9:61104578	False			0	Read count too low: 1 < 8	FAIL	1
CNOT4--SCAF8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CNOT4^ENSG00000080802.19	chr7:135395850:-	SCAF8^ENSG00000213079.10	chr6:154827172:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2236:31515:11930	.	NO_LDAS	0.0034	GT	1.6729	AG	1.7819	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr7--chr6]""]"	chr7:135395850-chr6:154827172	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
CNOT4--KLHDC10	1	0	1.0	0.0	ONLY_REF_SPLICE	CNOT4^ENSG00000080802.19	chr7:135509889:-	KLHDC10^ENSG00000128607.14	chr7:130116445:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2285:13127:25816	.	NO_LDAS	0.0034	GT	1.4566	AG	1.6402	"[""INTRACHROMOSOMAL[chr7:5.23Mb]""]"	chr7:135509889-chr7:130116445	False			0	Read count too low: 1 < 8	FAIL	1
CNOT11--AL121772.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CNOT11^ENSG00000158435.8	chr2:101269289:+	AL121772.1^ENSG00000274414.1	chr20:25240828:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2343:35099:7067	.	NO_LDAS	0.0034	GT	1.7819	AG	1.8256	"[""INTERCHROMOSOMAL[chr2--chr20]""]"	chr2:101269289-chr20:25240828	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CMTM7--RTKN2	1	0	1.0	0.0	ONLY_REF_SPLICE	CMTM7^ENSG00000153551.14	chr3:32454542:+	RTKN2^ENSG00000182010.11	chr10:62199861:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1168:31435:17338	.	YES_LDAS	0.0034	GT	1.8323	AG	1.9329	"[""INTERCHROMOSOMAL[chr3--chr10]""]"	chr3:32454542-chr10:62199861	False			0	Read count too low: 1 < 8	FAIL	1
CMC4--C13orf46	1	0	1.0	0.0	ONLY_REF_SPLICE	CMC4^ENSG00000182712.16	chrX:155070694:-	C13orf46^ENSG00000283199.3	chr13:113956839:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1319:12399:27693	.	YES_LDAS	0.0034	GT	1.4295	AG	1.9329	"[""INTERCHROMOSOMAL[chrX--chr13]""]"	chrX:155070694-chr13:113956839	False			0	Read count too low: 1 < 8	FAIL	1
CLUH--PITPNA	1	0	1.0	0.0	ONLY_REF_SPLICE	CLUH^ENSG00000132361.18	chr17:2711562:-	PITPNA^ENSG00000174238.15	chr17:1558559:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2210:34412:28716	.	YES_LDAS	0.0034	GT	0.971	AG	1.9656	"[""INTRACHROMOSOMAL[chr17:1.13Mb]""]"	chr17:2711562-chr17:1558559	False			0	Read count too low: 1 < 8	FAIL	1
CLPX--DENND4A	1	0	1.0	0.0	ONLY_REF_SPLICE	CLPX^ENSG00000166855.9	chr15:65178934:-	DENND4A^ENSG00000174485.16	chr15:65701192:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2144:41620:7628	.	YES_LDAS	0.0034	GT	1.8892	AG	1.7819	"[""INTRACHROMOSOMAL[chr15:0.47Mb]""]"	chr15:65178934-chr15:65701192	False			0	Read count too low: 1 < 8	FAIL	1
CLN8--ITGA3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CLN8^ENSG00000182372.10	chr8:1784970:+	ITGA3^ENSG00000005884.18	chr17:50075667:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1245:41288:10640	.	NO_LDAS	0.0034	GT	1.5546	AG	1.6895	"[""INTERCHROMOSOMAL[chr8--chr17]""]"	chr8:1784970-chr17:50075667	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CLDND1--TTL	1	0	1.0	0.0	ONLY_REF_SPLICE	CLDND1^ENSG00000080822.17	chr3:98522849:-	TTL^ENSG00000114999.8	chr2:112528681:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1453:43853:17100	.	YES_LDAS	0.0034	GT	1.5546	AG	1.9656	"[""INTERCHROMOSOMAL[chr3--chr2]""]"	chr3:98522849-chr2:112528681	False			0	Read count too low: 1 < 8	FAIL	1
CLCN6--SRGAP2	1	0	1.0	0.0	ONLY_REF_SPLICE	CLCN6^ENSG00000011021.23	chr1:11807190:+	SRGAP2^ENSG00000266028.7	chr1:206415889:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2221:5118:11607	.	NO_LDAS	0.0034	GT	1.6895	AG	1.5546	"[""INTRACHROMOSOMAL[chr1:194.36Mb]""]"	chr1:11807190-chr1:206415889	False			0	Read count too low: 1 < 8	FAIL	1
CKMT1B--TUBGCP4	1	0	1.0	0.0	ONLY_REF_SPLICE	CKMT1B^ENSG00000237289.10	chr15:43599533:+	TUBGCP4^ENSG00000137822.13	chr15:43395583:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1454:5797:17520	.	YES_LDAS	0.0034	GT	1.9329	AG	1.7056	"[""INTRACHROMOSOMAL[chr15:0.18Mb]""]"	chr15:43599533-chr15:43395583	False			0	Read count too low: 1 < 8	FAIL	1
CKAP4--NPIPA1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CKAP4^ENSG00000136026.14	chr12:106238312:-	NPIPA1^ENSG00000183426.17	chr16:14924542:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1304:43125:6143	.	YES_LDAS	0.0034	GT	1.7232	AG	1.7465	"[""INTERCHROMOSOMAL[chr12--chr16]""]"	chr12:106238312-chr16:14924542	False			0	Read count too low: 1 < 8	FAIL	1
CIITA--FBXL21P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CIITA^ENSG00000179583.20	chr16:10903895:+	FBXL21P^ENSG00000164616.16	chr5:135951331:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1327:51150:28534	.	NO_LDAS	0.0034	GT	1.7465	AG	1.8892	"[""INTERCHROMOSOMAL[chr16--chr5]""]"	chr16:10903895-chr5:135951331	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CHST13--CYP2E1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CHST13^ENSG00000180767.10	chr3:126524429:+	CYP2E1^ENSG00000130649.10	chr10:133520491:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1255:20270:4195	.	NO_LDAS	0.0034	GT	1.3996	AG	1.5546	"[""INTERCHROMOSOMAL[chr3--chr10]""]"	chr3:126524429-chr10:133520491	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CHRNB2--USP2-AS1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	CHRNB2^ENSG00000160716.6	chr1:154567995:+	USP2-AS1^ENSG00000245248.8	chr11:119381703:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2468:2375:28772	.	NO_LDAS	0.0017	GC	1.1589	AG	1.6049	"[""INTERCHROMOSOMAL[chr1--chr11]""]"	chr1:154567995-chr11:119381703	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CHPT1--KCTD9	1	0	1.0	0.0	ONLY_REF_SPLICE	CHPT1^ENSG00000111666.11	chr12:101730636:+	KCTD9^ENSG00000104756.16	chr8:25429973:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1291:39063:9253	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8295	"[""INTERCHROMOSOMAL[chr12--chr8]""]"	chr12:101730636-chr8:25429973	False			0	Read count too low: 1 < 8	FAIL	1
CHN1--UBQLN1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	CHN1^ENSG00000128656.15	chr2:175005263:-	UBQLN1^ENSG00000135018.14	chr9:83707705:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1105:39161:28590	.	NO_LDAS	0.0017	GT	1.1589	AG	1.4716	"[""INTERCHROMOSOMAL[chr2--chr9]""]"	chr2:175005263-chr9:83707705	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CHN1--BARX1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CHN1^ENSG00000128656.15	chr2:175005263:-	BARX1^ENSG00000131668.14	chr9:93955195:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1314:6485:4755	.	NO_LDAS	0.0034	GT	1.1589	AG	1.231	"[""INTERCHROMOSOMAL[chr2--chr9]""]"	chr2:175005263-chr9:93955195	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CHMP7--RBBP8	1	0	0.33	0.0	INCL_NON_REF_SPLICE	CHMP7^ENSG00000147457.14	chr8:23246787:+	RBBP8^ENSG00000101773.19	chr18:23016880:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2125:33554:2822	.	NO_LDAS	0.0011	GT	1.7465	AG	1.5329	"[""INTERCHROMOSOMAL[chr8--chr18]""]"	chr8:23246787-chr18:23016880	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CHMP4A--STRN3	1	0	1.0	0.0	ONLY_REF_SPLICE	CHMP4A^ENSG00000254505.11	chr14:24213409:-	STRN3^ENSG00000196792.12	chr14:30936624:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1142:46134:26040	.	NO_LDAS	0.0034	GT	1.8295	AG	1.7819	"[""INTRACHROMOSOMAL[chr14:6.68Mb]""]"	chr14:24213409-chr14:30936624	False			0	Read count too low: 1 < 8	FAIL	1
CHMP3--FHIT	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CHMP3^ENSG00000115561.16	chr2:86542248:-	FHIT^ENSG00000189283.10	chr3:61042059:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1115:47477:1687	.	NO_LDAS	0.0034	GT	1.6895	AG	1.231	"[""INTERCHROMOSOMAL[chr2--chr3]""]"	chr2:86542248-chr3:61042059	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CHKB--SEH1L	1	0	1.0	0.0	ONLY_REF_SPLICE	CHKB^ENSG00000100288.20	chr22:50582249:-	SEH1L^ENSG00000085415.16	chr18:12955463:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1176:16007:2976	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""INTERCHROMOSOMAL[chr22--chr18]""]"	chr22:50582249-chr18:12955463	False			0	Read count too low: 1 < 8	FAIL	1
CHID1--KIAA1109	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CHID1^ENSG00000177830.18	chr11:910807:-	KIAA1109^ENSG00000138688.16	chr4:122333764:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1104:12375:22635	.	NO_LDAS	0.0034	GT	1.585	AG	1.8295	"[""INTERCHROMOSOMAL[chr11--chr4]""]"	chr11:910807-chr4:122333764	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CHFR--AC073111.3	1	0	1.0	0.0	ONLY_REF_SPLICE	CHFR^ENSG00000072609.18	chr12:132841518:-	AC073111.3^ENSG00000284691.1	chr7:150407584:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:32413:14802	.	YES_LDAS	0.0034	GT	1.9899	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr7]""]"	chr12:132841518-chr7:150407584	False			0	Read count too low: 1 < 8	FAIL	1
CHD2--CDCA2	1	0	1.0	0.0	ONLY_REF_SPLICE	CHD2^ENSG00000173575.22	chr15:93020258:+	CDCA2^ENSG00000184661.14	chr8:25503373:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1103:2845:16470	.	YES_LDAS	0.0034	GT	1.7819	AG	1.7819	"[""INTERCHROMOSOMAL[chr15--chr8]""]"	chr15:93020258-chr8:25503373	False			0	Read count too low: 1 < 8	FAIL	1
CHCHD10--VEGFC	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CHCHD10^ENSG00000250479.9	chr22:23767834:-	VEGFC^ENSG00000150630.4	chr4:176792822:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1166:36208:10528	.	NO_LDAS	0.0034	GT	1.6402	AG	1.053	"[""INTERCHROMOSOMAL[chr22--chr4]""]"	chr22:23767834-chr4:176792822	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
CHCHD10--DHRS4-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CHCHD10^ENSG00000250479.9	chr22:23767834:-	DHRS4-AS1^ENSG00000215256.4	chr14:23988786:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2119:38368:5050	.	NO_LDAS	0.0034	GT	1.6402	AG	1.3753	"[""INTERCHROMOSOMAL[chr22--chr14]""]"	chr22:23767834-chr14:23988786	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CHCHD10--CLVS2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CHCHD10^ENSG00000250479.9	chr22:23767834:-	CLVS2^ENSG00000146352.13	chr6:122996341:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1156:30092:24401	.	NO_LDAS	0.0034	GT	1.6402	AG	1.1589	"[""INTERCHROMOSOMAL[chr22--chr6]""]"	chr22:23767834-chr6:122996341	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
CFAP74--SDF2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CFAP74^ENSG00000142609.18	chr1:1960040:-	SDF2^ENSG00000132581.10	chr17:28649276:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:41264:19342	.	NO_LDAS	0.0034	GT	1.9086	AG	1.7819	"[""INTERCHROMOSOMAL[chr1--chr17]""]"	chr1:1960040-chr17:28649276	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CERS6-AS1--PLEKHM3	1	0	0.17	0.0	ONLY_REF_SPLICE	CERS6-AS1^ENSG00000227617.9	chr2:168783955:-	PLEKHM3^ENSG00000178385.15	chr2:207908577:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1285:16654:7095	.	NO_LDAS	0.0006	GT	1.8892	AG	1.9329	"[""INTRACHROMOSOMAL[chr2:39.03Mb]""]"	chr2:168783955-chr2:207908577	False			0	Read count too low: 1 < 8	FAIL	1
CERS6--SP100	1	0	1.0	0.0	ONLY_REF_SPLICE	CERS6^ENSG00000172292.15	chr2:168717978:+	SP100^ENSG00000067066.17	chr2:230494416:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2243:45091:1112	.	YES_LDAS	0.0034	GT	1.6402	AG	1.231	"[""INTRACHROMOSOMAL[chr2:61.64Mb]""]"	chr2:168717978-chr2:230494416	False			0	Read count too low: 1 < 8	FAIL	1
CERS1--CASP16P	1	0	0.17	0.0	INCL_NON_REF_SPLICE	CERS1^ENSG00000223802.8	chr19:18868917:-	CASP16P^ENSG00000228146.8	chr16:3149908:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1447:30043:22999	.	NO_LDAS	0.0006	GT	1.4295	AG	1.6729	"[""INTERCHROMOSOMAL[chr19--chr16]""]"	chr19:18868917-chr16:3149908	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CEP70--C3orf70	1	0	1.0	0.0	ONLY_REF_SPLICE	CEP70^ENSG00000114107.9	chr3:138570318:-	C3orf70^ENSG00000187068.3	chr3:185083563:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1102:10198:17801	.	YES_LDAS	0.0034	GT	1.8295	AG	1.8892	"[""INTRACHROMOSOMAL[chr3:46.48Mb]""]"	chr3:138570318-chr3:185083563	False			0	Read count too low: 1 < 8	FAIL	1
CEP63--ACAD11	1	0	1.0	0.0	ONLY_REF_SPLICE	CEP63^ENSG00000182923.19	chr3:134507286:+	ACAD11^ENSG00000240303.8	chr3:132631479:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1466:51441:20659	.	YES_LDAS	0.0034	GT	1.8323	AG	1.9329	"[""INTRACHROMOSOMAL[chr3:1.83Mb]""]"	chr3:134507286-chr3:132631479	False			0	Read count too low: 1 < 8	FAIL	1
CEP152--SEC1P	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CEP152^ENSG00000103995.14	chr15:48741064:-	SEC1P^ENSG00000232871.8	chr19:48638091:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1297:20351:12574	.	NO_LDAS	0.0034	AT	1.5219	AC	1.7968	"[""INTERCHROMOSOMAL[chr15--chr19]""]"	chr15:48741064-chr19:48638091	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CEP128--AC009121.2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CEP128^ENSG00000100629.17	chr14:80777882:-	AC009121.2^ENSG00000262703.1	chr16:11348815:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1172:47105:2808	.	NO_LDAS	0.0034	GT	1.6402	AG	1.8256	"[""INTERCHROMOSOMAL[chr14--chr16]""]"	chr14:80777882-chr16:11348815	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CELF4--GOLPH3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CELF4^ENSG00000101489.20	chr18:37275187:-	GOLPH3^ENSG00000113384.14	chr5:32173911:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2120:28692:19847	.	NO_LDAS	0.0034	GC	1.7819	AG	1.5219	"[""INTERCHROMOSOMAL[chr18--chr5]""]"	chr18:37275187-chr5:32173911	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CELF3--SEPTIN2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CELF3^ENSG00000159409.15	chr1:151707868:-	SEPTIN2^ENSG00000168385.18	chr2:241350089:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2309:40892:26488	.	NO_LDAS	0.0034	GC	1.8295	AG	1.7819	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:151707868-chr2:241350089	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CELF1--DAP3	1	0	1.0	0.0	ONLY_REF_SPLICE	CELF1^ENSG00000149187.18	chr11:47472191:-	DAP3^ENSG00000132676.16	chr1:155738609:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1180:17237:8497	.	YES_LDAS	0.0034	GT	1.8323	AG	1.7968	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:47472191-chr1:155738609	False			0	Read count too low: 1 < 8	FAIL	1
CEACAM19--PVR	1	0	1.0	0.0	ONLY_REF_SPLICE	CEACAM19^ENSG00000186567.13	chr19:44673845:+	PVR^ENSG00000073008.15	chr19:44661292:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1177:47971:19104	.	YES_LDAS	0.0034	GT	1.3996	AG	1.9329	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr19:0.00Mb]"",""NEIGHBORS_OVERLAP:+:+:[3884]""]"	chr19:44673845-chr19:44661292	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
CDS2--SNRPN	1	0	1.0	0.0	ONLY_REF_SPLICE	CDS2^ENSG00000101290.14	chr20:5127149:+	SNRPN^ENSG00000128739.23	chr15:24962114:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1192:17115:23756	.	YES_LDAS	0.0034	GT	1.5656	AG	1.9656	"[""INTERCHROMOSOMAL[chr20--chr15]""]"	chr20:5127149-chr15:24962114	False			0	Read count too low: 1 < 8	FAIL	1
CDK5RAP3--PDE12	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CDK5RAP3^ENSG00000108465.15	chr17:47978649:+	PDE12^ENSG00000174840.9	chr3:57557177:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1428:12108:11719	.	NO_LDAS	0.0034	GT	1.4566	AG	1.4295	"[""INTERCHROMOSOMAL[chr17--chr3]""]"	chr17:47978649-chr3:57557177	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CDHR5--AL109615.4	1	0	0.5	0.0	INCL_NON_REF_SPLICE	CDHR5^ENSG00000099834.19	chr11:618806:-	AL109615.4^ENSG00000287562.1	chr6:44092343:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1178:17237:27890	.	NO_LDAS	0.0017	GT	1.6729	AG	1.9899	"[""INTERCHROMOSOMAL[chr11--chr6]""]"	chr11:618806-chr6:44092343	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CDHR5--AL109615.4	1	0	0.5	0.0	INCL_NON_REF_SPLICE	CDHR5^ENSG00000099834.19	chr11:618713:-	AL109615.4^ENSG00000287562.1	chr6:44092343:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1178:17237:27890	.	NO_LDAS	0.0017	GT	1.6402	AG	1.9899	"[""INTERCHROMOSOMAL[chr11--chr6]""]"	chr11:618713-chr6:44092343	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CDC42--SPIDR	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CDC42^ENSG00000070831.17	chr1:22097968:+	SPIDR^ENSG00000164808.17	chr8:47396376:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1132:11760:1420	.	YES_LDAS	0.0034	GT	1.9086	AG	1.8892	"[""INTERCHROMOSOMAL[chr1--chr8]""]"	chr1:22097968-chr8:47396376	False			0	Read count too low: 1 < 8	FAIL	1
CDC20B--KLF3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CDC20B^ENSG00000164287.13	chr5:55172965:-	KLF3^ENSG00000109787.13	chr4:38680587:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2134:48949:29235	.	NO_LDAS	0.0034	GT	1.7056	AG	1.5219	"[""INTERCHROMOSOMAL[chr5--chr4]""]"	chr5:55172965-chr4:38680587	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CD99P1--PRKX	1	0	0.5	0.0	ONLY_REF_SPLICE	CD99P1^ENSG00000223773.7	chrX:2626642:+	PRKX^ENSG00000183943.6	chrX:3674766:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2379:10748:29067	.	YES_LDAS	0.0017	GT	1.7968	AG	1.8892	"[""INTERCHROMOSOMAL[chrY--chrX]""]"	chrX:2626642-chrX:3674766	False			0	Read count too low: 1 < 8	FAIL	1
CD99--FENDRR	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CD99^ENSG00000002586.20	chrX:2723368:+	FENDRR^ENSG00000268388.6	chr16:86488019:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1163:2100:15265	.	NO_LDAS	0.0034	GT	1.231	AG	1.6729	"[""INTERCHROMOSOMAL[chrY--chr16]""]"	chrX:2723368-chr16:86488019	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CD63--BX537318.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CD63^ENSG00000135404.12	chr12:55726121:-	BX537318.1^ENSG00000273145.1	chr22:46014793:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1459:8103:2149	.	NO_LDAS	0.0034	GT	1.9086	AG	1.4256	"[""INTERCHROMOSOMAL[chr12--chr22]""]"	chr12:55726121-chr22:46014793	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CD6--SGSM3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CD6^ENSG00000013725.14	chr11:61008399:+	SGSM3^ENSG00000100359.21	chr22:40408126:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2204:8321:11607	.	NO_LDAS	0.0034	GT	1.8892	AG	1.1033	"[""INTERCHROMOSOMAL[chr11--chr22]""]"	chr11:61008399-chr22:40408126	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CD47--SUCLG2	1	0	1.0	0.0	ONLY_REF_SPLICE	CD47^ENSG00000196776.17	chr3:108090863:-	SUCLG2^ENSG00000172340.15	chr3:67529186:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1133:43117:12854	.	YES_LDAS	0.0034	GT	1.5058	AG	1.6729	"[""INTRACHROMOSOMAL[chr3:40.39Mb]""]"	chr3:108090863-chr3:67529186	False			0	Read count too low: 1 < 8	FAIL	1
CD36--CEP295	1	0	1.0	0.0	ONLY_REF_SPLICE	CD36^ENSG00000135218.19	chr7:80546267:+	CEP295^ENSG00000166004.15	chr11:93687644:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2464:25828:21556	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9219	"[""INTERCHROMOSOMAL[chr7--chr11]""]"	chr7:80546267-chr11:93687644	False			0	Read count too low: 1 < 8	FAIL	1
CD27-AS1--AC096588.1	1	0	1.0	0.0	ONLY_REF_SPLICE	CD27-AS1^ENSG00000215039.7	chr12:6450341:-	AC096588.1^ENSG00000249392.1	chr4:59551254:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1285:31483:11874	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8062	"[""INTERCHROMOSOMAL[chr12--chr4]""]"	chr12:6450341-chr4:59551254	False			0	Read count too low: 1 < 8	FAIL	1
CCNY--GDI2	1	0	1.0	0.0	ONLY_REF_SPLICE	CCNY^ENSG00000108100.18	chr10:35553185:+	GDI2^ENSG00000057608.17	chr10:5800705:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1279:3573:18768	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTRACHROMOSOMAL[chr10:29.40Mb]""]"	chr10:35553185-chr10:5800705	False			0	Read count too low: 1 < 8	FAIL	1
CCNY--AL391807.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CCNY^ENSG00000108100.18	chr10:35483478:+	AL391807.1^ENSG00000230910.4	chr6:68630859:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2277:42227:19804	.	NO_LDAS	0.0034	GT	1.9329	AG	1.6402	"[""INTERCHROMOSOMAL[chr10--chr6]""]"	chr10:35483478-chr6:68630859	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CCND3--TBC1D14	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CCND3^ENSG00000112576.13	chr6:42048168:-	TBC1D14^ENSG00000132405.19	chr4:6996325:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2440:8208:10711	.	NO_LDAS	0.0034	GT	1.7465	AG	1.6895	"[""INTERCHROMOSOMAL[chr6--chr4]""]"	chr6:42048168-chr4:6996325	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CCL27--ABCF2P1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CCL27^ENSG00000213927.4	chr9:34663734:-	ABCF2P1^ENSG00000242159.1	chr3:88318118:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1454:31475:29095	.	NO_LDAS	0.0034	GT	1.8295	AG	1.6402	"[""INTERCHROMOSOMAL[chr9--chr3]""]"	chr9:34663734-chr3:88318118	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CCDC7--LINC02261	1	0	1.0	0.0	ONLY_REF_SPLICE	CCDC7^ENSG00000216937.13	chr10:32854489:+	LINC02261^ENSG00000249699.1	chr4:27231364:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2210:49233:1336	.	YES_LDAS	0.0034	GT	1.7465	AG	1.9086	"[""INTERCHROMOSOMAL[chr10--chr4]""]"	chr10:32854489-chr4:27231364	False			0	Read count too low: 1 < 8	FAIL	1
CCDC57--SORBS2	1	0	1.0	0.0	ONLY_REF_SPLICE	CCDC57^ENSG00000176155.19	chr17:82127692:-	SORBS2^ENSG00000154556.18	chr4:185678822:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1262:38384:17689	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9086	"[""INTERCHROMOSOMAL[chr17--chr4]""]"	chr17:82127692-chr4:185678822	False			0	Read count too low: 1 < 8	FAIL	1
CCDC198--FAM120A	1	0	0.5	0.0	ONLY_REF_SPLICE	CCDC198^ENSG00000100557.10	chr14:57475582:-	FAM120A^ENSG00000048828.17	chr9:93476256:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1193:35415:15517	.	YES_LDAS	0.0017	GT	1.9329	AG	1.9329	"[""INTERCHROMOSOMAL[chr14--chr9]""]"	chr14:57475582-chr9:93476256	False			0	Read count too low: 1 < 8	FAIL	1
CCDC198--EIF4E	1	0	0.33	0.0	ONLY_REF_SPLICE	CCDC198^ENSG00000100557.10	chr14:57475582:-	EIF4E^ENSG00000151247.13	chr4:98901982:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2113:33295:20197	.	YES_LDAS	0.0011	GT	1.9329	AG	1.6895	"[""INTERCHROMOSOMAL[chr14--chr4]""]"	chr14:57475582-chr4:98901982	False			0	Read count too low: 1 < 8	FAIL	1
CCDC148--PKP4	1	0	1.0	0.0	ONLY_REF_SPLICE	CCDC148^ENSG00000153237.18	chr2:158220595:-	PKP4^ENSG00000144283.22	chr2:158533180:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1467:50066:17745	.	YES_LDAS	0.0034	GT	1.1589	AG	1.9329	"[""INTRACHROMOSOMAL[chr2:0.00Mb]"",""LOCAL_INVERSION:-:+:[199]""]"	chr2:158220595-chr2:158533180	False			0	Read count too low: 1 < 8	FAIL	1
CCDC124--AL592146.2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	CCDC124^ENSG00000007080.11	chr19:17936579:+	AL592146.2^ENSG00000286572.1	chr1:204064609:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2192:41046:15461	.	NO_LDAS	0.0017	GT	1.5219	AG	0.971	"[""INTERCHROMOSOMAL[chr19--chr1]""]"	chr19:17936579-chr1:204064609	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CCAR2--HSF5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CCAR2^ENSG00000158941.16	chr8:22617778:+	HSF5^ENSG00000176160.11	chr17:58420402:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1427:50066:18529	.	NO_LDAS	0.0034	GT	1.9899	AG	1.9086	"[""INTERCHROMOSOMAL[chr8--chr17]""]"	chr8:22617778-chr17:58420402	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CCAR1--RUFY2	1	0	1.0	0.0	ONLY_REF_SPLICE	CCAR1^ENSG00000060339.14	chr10:68749685:+	RUFY2^ENSG00000204130.14	chr10:68401737:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1209:32899:15363	.	YES_LDAS	0.0034	GT	1.5546	AG	1.5628	"[""INTRACHROMOSOMAL[chr10:0.31Mb]""]"	chr10:68749685-chr10:68401737	False			0	Read count too low: 1 < 8	FAIL	1
CBLB--ZNF251	1	0	1.0	0.0	ONLY_REF_SPLICE	CBLB^ENSG00000114423.23	chr3:105853414:-	ZNF251^ENSG00000198169.9	chr8:144723382:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1408:45179:4741	.	YES_LDAS	0.0034	GT	1.8062	AG	1.7819	"[""INTERCHROMOSOMAL[chr3--chr8]""]"	chr3:105853414-chr8:144723382	False			0	Read count too low: 1 < 8	FAIL	1
CBFA2T3--AP006621.1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	CBFA2T3^ENSG00000129993.15	chr16:88879453:-	AP006621.1^ENSG00000255108.1	chr11:824679:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1331:47542:10150	.	NO_LDAS	0.0011	GT	1.9656	AG	1.8323	"[""INTERCHROMOSOMAL[chr16--chr11]""]"	chr16:88879453-chr11:824679	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CASTOR2--MYO1C	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CASTOR2^ENSG00000274070.2	chr7:75029087:+	MYO1C^ENSG00000197879.17	chr17:1471951:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2207:3395:9660	.	NO_LDAS	0.0034	GT	1.8295	AG	1.9329	"[""INTERCHROMOSOMAL[chr7--chr17]""]"	chr7:75029087-chr17:1471951	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CARF--HELZ	1	0	1.0	0.0	ONLY_REF_SPLICE	CARF^ENSG00000138380.18	chr2:202918043:+	HELZ^ENSG00000198265.12	chr17:67138114:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1166:32567:27595	.	NO_LDAS	0.0034	GT	1.9656	AG	1.4295	"[""INTERCHROMOSOMAL[chr2--chr17]""]"	chr2:202918043-chr17:67138114	False			0	Read count too low: 1 < 8	FAIL	1
CAPZB--RPAIN	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CAPZB^ENSG00000077549.19	chr1:19419661:-	RPAIN^ENSG00000129197.15	chr17:5426686:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2385:47113:28044	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8295	"[""INTERCHROMOSOMAL[chr1--chr17]""]"	chr1:19419661-chr17:5426686	False			0	Read count too low: 1 < 8	FAIL	1
CAMSAP1--PPIG	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CAMSAP1^ENSG00000130559.19	chr9:135907000:-	PPIG^ENSG00000138398.17	chr2:169584648:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1339:35925:16428	.	NO_LDAS	0.0034	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chr9--chr2]""]"	chr9:135907000-chr2:169584648	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CAMKMT--MCTP1	1	0	1.0	0.0	ONLY_REF_SPLICE	CAMKMT^ENSG00000143919.15	chr2:44390305:+	MCTP1^ENSG00000175471.19	chr5:94888972:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1458:2917:18838	.	NO_LDAS	0.0034	GT	1.7819	AG	1.9656	"[""INTERCHROMOSOMAL[chr2--chr5]""]"	chr2:44390305-chr5:94888972	False			0	Read count too low: 1 < 8	FAIL	1
CAMK2G--IRAG2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CAMK2G^ENSG00000148660.21	chr10:73837468:-	IRAG2^ENSG00000118308.15	chr12:25004714:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1153:18499:12952	.	NO_LDAS	0.0034	GT	1.8295	AG	1.7465	"[""INTERCHROMOSOMAL[chr10--chr12]""]"	chr10:73837468-chr12:25004714	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CAMK2G--AC114964.1	1	0	0.05	0.0	INCL_NON_REF_SPLICE	CAMK2G^ENSG00000148660.21	chr10:73817023:-	AC114964.1^ENSG00000248699.1	chr5:15451049:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1304:28417:25928	.	NO_LDAS	0.0002	GT	1.7968	AG	1.9656	"[""INTERCHROMOSOMAL[chr10--chr5]""]"	chr10:73817023-chr5:15451049	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CACYBP--CGREF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CACYBP^ENSG00000116161.18	chr1:175004784:+	CGREF1^ENSG00000138028.16	chr2:27099131:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:36143:7782	.	NO_LDAS	0.0034	GT	1.8892	AG	1.7968	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:175004784-chr2:27099131	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CACNB4--MARCHF7	1	0	1.0	0.0	ONLY_REF_SPLICE	CACNB4^ENSG00000182389.20	chr2:151841903:-	MARCHF7^ENSG00000136536.15	chr2:159729009:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1158:51045:18347	.	YES_LDAS	0.0034	GT	1.8892	AG	1.4716	"[""INTRACHROMOSOMAL[chr2:7.61Mb]""]"	chr2:151841903-chr2:159729009	False			0	Read count too low: 1 < 8	FAIL	1
CACNB4--FAM155A	1	0	0.25	0.0	INCL_NON_REF_SPLICE	CACNB4^ENSG00000182389.20	chr2:151874037:-	FAM155A^ENSG00000204442.4	chr13:107866374:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1104:14437:2808	.	NO_LDAS	0.0009	GT	1.5301	AG	1.5656	"[""INTERCHROMOSOMAL[chr2--chr13]""]"	chr2:151874037-chr13:107866374	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
CACNB2--CACNB1	1	0	1.0	0.0	ONLY_REF_SPLICE	CACNB2^ENSG00000165995.22	chr10:18518416:+	CACNB1^ENSG00000067191.16	chr17:39184383:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1285:49224:12672	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9329	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr10--chr17]""]"	chr10:18518416-chr17:39184383	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
CACNA2D3--TLE1	1	0	1.0	0.0	ONLY_REF_SPLICE	CACNA2D3^ENSG00000157445.15	chr3:54642241:+	TLE1^ENSG00000196781.16	chr9:81593274:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1301:36369:3915	.	NO_LDAS	0.0034	GT	1.9086	AG	1.7819	"[""INTERCHROMOSOMAL[chr3--chr9]""]"	chr3:54642241-chr9:81593274	False			0	Read count too low: 1 < 8	FAIL	1
CA13--CA3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	CA13^ENSG00000185015.8	chr8:85281639:+	CA3^ENSG00000164879.7	chr8:85439712:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:4883:27119	.	YES_LDAS	0.0034	GT	1.7968	AG	1.8892	"[""DGD_PARALOGS"",""ConjoinG"",""GTEx_recurrent_StarF2019"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr8:0.09Mb]"",""NEIGHBORS[89363]""]"	chr8:85281639-chr8:85439712	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
C9orf40--NDUFS7	1	0	1.0	0.0	INCL_NON_REF_SPLICE	C9orf40^ENSG00000135045.7	chr9:74952303:-	NDUFS7^ENSG00000115286.20	chr19:1395489:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:39614:17184	.	NO_LDAS	0.0034	GT	1.1589	AG	0.9183	"[""INTERCHROMOSOMAL[chr9--chr19]""]"	chr9:74952303-chr19:1395489	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
C9orf131--KCNH8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	C9orf131^ENSG00000174038.13	chr9:35043302:+	KCNH8^ENSG00000183960.9	chr3:19438164:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1388:14575:9071	.	NO_LDAS	0.0034	GT	1.6895	AG	1.8323	"[""INTERCHROMOSOMAL[chr9--chr3]""]"	chr9:35043302-chr3:19438164	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
C8orf76--DIRC3-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	C8orf76^ENSG00000189376.12	chr8:123241230:-	DIRC3-AS1^ENSG00000233143.2	chr2:217304272:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1310:46094:26250	.	NO_LDAS	0.0034	GT	1.8323	AG	1.5058	"[""INTERCHROMOSOMAL[chr8--chr2]""]"	chr8:123241230-chr2:217304272	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
C5orf24--KIF13A	1	0	1.0	0.0	ONLY_REF_SPLICE	C5orf24^ENSG00000181904.9	chr5:134855327:+	KIF13A^ENSG00000137177.20	chr6:17764946:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2139:10554:16512	.	YES_LDAS	0.0034	GT	1.8062	AG	1.8323	"[""INTERCHROMOSOMAL[chr5--chr6]""]"	chr5:134855327-chr6:17764946	False			0	Read count too low: 1 < 8	FAIL	1
C1orf74--RPL11	1	0	1.0	0.0	INCL_NON_REF_SPLICE	C1orf74^ENSG00000162757.4	chr1:209779719:-	RPL11^ENSG00000142676.14	chr1:23695798:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1110:8993:16470	.	NO_LDAS	0.0034	GT	1.9086	AG	1.8295	"[""INTRACHROMOSOMAL[chr1:186.08Mb]""]"	chr1:209779719-chr1:23695798	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
C1orf43--UBE3B	1	0	1.0	0.0	ONLY_REF_SPLICE	C1orf43^ENSG00000143612.21	chr1:154213182:-	UBE3B^ENSG00000151148.14	chr12:109516765:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1436:31054:29403	.	YES_LDAS	0.0034	GT	1.9329	AG	1.8295	"[""INTERCHROMOSOMAL[chr1--chr12]""]"	chr1:154213182-chr12:109516765	False			0	Read count too low: 1 < 8	FAIL	1
C1orf21--ASAP2	1	0	1.0	0.0	ONLY_REF_SPLICE	C1orf21^ENSG00000116667.15	chr1:184387368:+	ASAP2^ENSG00000151693.11	chr2:9350808:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1236:24251:25465	.	YES_LDAS	0.0034	GT	1.5301	AG	1.8295	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:184387368-chr2:9350808	False			0	Read count too low: 1 < 8	FAIL	1
C1RL--AL391095.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	C1RL^ENSG00000139178.11	chr12:7096670:-	AL391095.1^ENSG00000224635.2	chr20:38406327:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1187:20764:16175	.	NO_LDAS	0.0034	GT	1.9329	AG	1.6729	"[""INTERCHROMOSOMAL[chr12--chr20]""]"	chr12:7096670-chr20:38406327	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
C17orf80--ACYP1	1	0	1.0	0.0	ONLY_REF_SPLICE	C17orf80^ENSG00000141219.15	chr17:73233325:+	ACYP1^ENSG00000119640.9	chr14:75053659:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1141:24898:12098	.	NO_LDAS	0.0034	GT	1.7968	AG	1.7056	"[""INTERCHROMOSOMAL[chr17--chr14]""]"	chr17:73233325-chr14:75053659	False			0	Read count too low: 1 < 8	FAIL	1
C15orf48--TSN	1	0	0.5	0.0	INCL_NON_REF_SPLICE	C15orf48^ENSG00000166920.13	chr15:45430606:+	TSN^ENSG00000211460.12	chr2:121765168:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1439:43626:25171	.	NO_LDAS	0.0017	GT	1.2867	AG	1.5546	"[""INTERCHROMOSOMAL[chr15--chr2]""]"	chr15:45430606-chr2:121765168	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BX890604.1--DOCK9	1	0	1.0	0.0	ONLY_REF_SPLICE	BX890604.1^ENSG00000285756.2	chrX:3843341:-	DOCK9^ENSG00000088387.19	chr13:98955551:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1287:43869:10598	.	NO_LDAS	0.0034	GT	1.7819	AG	1.7465	"[""INTERCHROMOSOMAL[chrX--chr13]""]"	chrX:3843341-chr13:98955551	False			0	Read count too low: 1 < 8	FAIL	1
BX005040.4--NUP98	1	0	0.25	0.0	ONLY_REF_SPLICE	BX005040.4^ENSG00000283541.1	chr9:61081890:-	NUP98^ENSG00000110713.17	chr11:3753408:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1229:44112:24863	.	NO_LDAS	0.0009	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr9--chr11]""]"	chr9:61081890-chr11:3753408	False			0	Read count too low: 1 < 8	FAIL	1
BST1--PRKAB2	1	0	1.0	0.0	ONLY_REF_SPLICE	BST1^ENSG00000109743.11	chr4:15722934:+	PRKAB2^ENSG00000131791.8	chr1:147162573:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1304:30140:20393	.	YES_LDAS	0.0034	GT	1.9656	AG	1.7465	"[""INTERCHROMOSOMAL[chr4--chr1]""]"	chr4:15722934-chr1:147162573	False			0	Read count too low: 1 < 8	FAIL	1
BRCC3--SGF29	1	0	1.0	0.0	INCL_NON_REF_SPLICE	BRCC3^ENSG00000185515.15	chrX:155122068:+	SGF29^ENSG00000176476.9	chr16:28581055:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2371:49977:18459	.	YES_LDAS	0.0034	GT	1.7968	AG	1.9656	"[""INTERCHROMOSOMAL[chrX--chr16]""]"	chrX:155122068-chr16:28581055	False			0	Read count too low: 1 < 8	FAIL	1
BOLA2B--SMG1P2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	BOLA2B^ENSG00000169627.9	chr16:30193358:-	SMG1P2^ENSG00000205534.6	chr16:29548658:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1434:25399:2766	.	YES_LDAS	0.0017	GT	1.9329	AG	1.9656	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr16:0.60Mb]""]"	chr16:30193358-chr16:29548658	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
BNIP3--BNIP3L	1	0	1.0	0.0	ONLY_REF_SPLICE	BNIP3^ENSG00000176171.11	chr10:131970864:-	BNIP3L^ENSG00000104765.16	chr8:26408227:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2267:37381:10150	.	YES_LDAS	0.0034	GT	1.5219	AG	1.9899	"[""INTERCHROMOSOMAL[chr10--chr8]""]"	chr10:131970864-chr8:26408227	False			0	Read count too low: 1 < 8	FAIL	1
BMP6--LEF1	1	0	0.25	0.0	INCL_NON_REF_SPLICE	BMP6^ENSG00000153162.9	chr6:7726133:+	LEF1^ENSG00000138795.10	chr4:108167748:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1166:17342:22999	.	NO_LDAS	0.0009	GT	1.4716	AG	1.3753	"[""INTERCHROMOSOMAL[chr6--chr4]""]"	chr6:7726133-chr4:108167748	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BMP6--BMP7	1	0	1.0	0.0	ONLY_REF_SPLICE	BMP6^ENSG00000153162.9	chr6:7879150:+	BMP7^ENSG00000101144.13	chr20:57173310:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2491:28846:22439	.	YES_LDAS	0.0034	GT	1.8295	AG	1.9656	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chr6--chr20]""]"	chr6:7879150-chr20:57173310	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
BLNK--C3orf52	1	0	1.0	0.0	INCL_NON_REF_SPLICE	BLNK^ENSG00000095585.17	chr10:96223826:-	C3orf52^ENSG00000114529.13	chr3:112130722:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2288:11663:4979	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8323	"[""INTERCHROMOSOMAL[chr10--chr3]""]"	chr10:96223826-chr3:112130722	False			0	Read count too low: 1 < 8	FAIL	1
BICC1--RELCH	1	0	1.0	0.0	INCL_NON_REF_SPLICE	BICC1^ENSG00000122870.12	chr10:58820468:+	RELCH^ENSG00000134444.15	chr18:62228349:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1177:30318:9463	.	NO_LDAS	0.0034	GT	1.9219	AG	1.6729	"[""INTERCHROMOSOMAL[chr10--chr18]""]"	chr10:58820468-chr18:62228349	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BHMT2--SRP9	1	0	0.5	0.0	ONLY_REF_SPLICE	BHMT2^ENSG00000132840.10	chr5:79077612:+	SRP9^ENSG00000143742.14	chr1:225777935:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1433:32535:26418	.	NO_LDAS	0.0017	GT	1.5219	AG	1.7819	"[""INTERCHROMOSOMAL[chr5--chr1]""]"	chr5:79077612-chr1:225777935	False			0	Read count too low: 1 < 8	FAIL	1
BHLHE22--UNC5B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	BHLHE22^ENSG00000180828.3	chr8:64580395:+	UNC5B^ENSG00000107731.12	chr10:71212895:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1421:45964:13107	.	NO_LDAS	0.0034	GT	1.5301	AG	1.2419	"[""INTERCHROMOSOMAL[chr8--chr10]""]"	chr8:64580395-chr10:71212895	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BDKRB2--BDKRB1	1	0	1.0	0.0	ONLY_REF_SPLICE	BDKRB2^ENSG00000168398.7	chr14:96237181:+	BDKRB1^ENSG00000100739.11	chr14:96263673:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1282:44629:16371	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9329	"[""ConjoinG"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr14:0.01Mb]"",""NEIGHBORS[12044]""]"	chr14:96237181-chr14:96263673	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
BDKRB2--BDKRB1	1	0	1.0	0.0	ONLY_REF_SPLICE	BDKRB2^ENSG00000168398.7	chr14:96237181:+	BDKRB1^ENSG00000100739.11	chr14:96262652:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1464:32114:14536	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8256	"[""ConjoinG"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr14:0.01Mb]"",""NEIGHBORS[12044]""]"	chr14:96237181-chr14:96262652	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
BCL7B--SETDB2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	BCL7B^ENSG00000106635.8	chr7:73557648:-	SETDB2^ENSG00000136169.16	chr13:49444671:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1442:17673:14073	.	NO_LDAS	0.0034	GC	0.8366	AG	1.3383	"[""INTERCHROMOSOMAL[chr7--chr13]""]"	chr7:73557648-chr13:49444671	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BCL2--CLEC2D	1	0	1.0	0.0	ONLY_REF_SPLICE	BCL2^ENSG00000171791.14	chr18:63318082:-	CLEC2D^ENSG00000069493.15	chr12:9687902:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1452:49338:28198	.	NO_LDAS	0.0034	GT	1.7968	AG	1.8295	"[""INTERCHROMOSOMAL[chr18--chr12]""]"	chr18:63318082-chr12:9687902	False			0	Read count too low: 1 < 8	FAIL	1
BCL2--CEP192	1	0	1.0	0.0	ONLY_REF_SPLICE	BCL2^ENSG00000171791.14	chr18:63318082:-	CEP192^ENSG00000101639.18	chr18:13048859:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1206:17690:3088	.	YES_LDAS	0.0034	GT	1.7968	AG	1.8892	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr18:50.00Mb]""]"	chr18:63318082-chr18:13048859	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
BCAN--PRSS27	1	0	1.0	0.0	INCL_NON_REF_SPLICE	BCAN^ENSG00000132692.19	chr1:156658737:+	PRSS27^ENSG00000172382.10	chr16:2712589:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1178:14923:15222	.	NO_LDAS	0.0034	GT	1.9329	AG	1.8295	"[""INTERCHROMOSOMAL[chr1--chr16]""]"	chr1:156658737-chr16:2712589	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
BANP--SNX29P1	1	0	0.5	0.0	ONLY_REF_SPLICE	BANP^ENSG00000172530.20	chr16:88035394:+	SNX29P1^ENSG00000158482.10	chr16:21376648:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2265:12731:24709	.	YES_LDAS	0.0017	GT	1.5656	AG	1.8256	"[""INTRACHROMOSOMAL[chr16:66.56Mb]""]"	chr16:88035394-chr16:21376648	True		aih_curated_blacklist score(5)	0	aih_curated_blacklist score(5)	FAIL	1
BAIAP2--CAPN10	1	0	1.0	0.0	ONLY_REF_SPLICE	BAIAP2^ENSG00000175866.15	chr17:81086580:+	CAPN10^ENSG00000142330.20	chr2:240616388:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1463:17795:16189	.	NO_LDAS	0.0034	GT	1.7819	AG	1.5656	"[""INTERCHROMOSOMAL[chr17--chr2]""]"	chr17:81086580-chr2:240616388	False			0	Read count too low: 1 < 8	FAIL	1
BAG1--DENND4C	1	0	1.0	0.0	ONLY_REF_SPLICE	BAG1^ENSG00000107262.26	chr9:33264224:-	DENND4C^ENSG00000137145.21	chr9:19276158:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1106:21516:29557	.	YES_LDAS	0.0034	GT	1.8892	AG	1.7232	"[""INTRACHROMOSOMAL[chr9:13.87Mb]""]"	chr9:33264224-chr9:19276158	False			0	Read count too low: 1 < 8	FAIL	1
BACH1--KCNK6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	BACH1^ENSG00000156273.16	chr21:29329693:+	KCNK6^ENSG00000099337.5	chr19:38325138:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1285:31054:28338	.	NO_LDAS	0.0034	GT	1.7819	AG	1.8892	"[""INTERCHROMOSOMAL[chr21--chr19]""]"	chr21:29329693-chr19:38325138	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
B4GALNT3--KREMEN1	1	0	1.0	0.0	ONLY_REF_SPLICE	B4GALNT3^ENSG00000139044.12	chr12:460545:+	KREMEN1^ENSG00000183762.13	chr22:29137342:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1303:39080:23462	.	YES_LDAS	0.0034	GT	1.7465	AG	1.5656	"[""INTERCHROMOSOMAL[chr12--chr22]""]"	chr12:460545-chr22:29137342	False			0	Read count too low: 1 < 8	FAIL	1
B2M--ATF3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	B2M^ENSG00000166710.21	chr15:44711613:+	ATF3^ENSG00000162772.17	chr1:212615041:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1475:11315:17773	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8062	"[""INTERCHROMOSOMAL[chr15--chr1]""]"	chr15:44711613-chr1:212615041	False			0	Read count too low: 1 < 8	FAIL	1
AXL--XPO5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AXL^ENSG00000167601.12	chr19:41231047:+	XPO5^ENSG00000124571.18	chr6:43526707:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1188:7367:1350	.	NO_LDAS	0.0034	GT	1.6895	AG	1.8295	"[""INTERCHROMOSOMAL[chr19--chr6]""]"	chr19:41231047-chr6:43526707	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATXN7L3B--ADAMTS7	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ATXN7L3B^ENSG00000253719.4	chr12:74538316:+	ADAMTS7^ENSG00000136378.15	chr15:78788374:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1310:42283:15839	.	NO_LDAS	0.0017	GC	1.5628	AG	1.9219	"[""INTERCHROMOSOMAL[chr12--chr15]""]"	chr12:74538316-chr15:78788374	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATXN7--AC087289.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATXN7^ENSG00000163635.20	chr3:63988324:+	AC087289.1^ENSG00000266980.1	chr17:75819820:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1181:3467:14186	.	NO_LDAS	0.0034	GT	1.8295	AG	1.6729	"[""INTERCHROMOSOMAL[chr3--chr17]""]"	chr3:63988324-chr17:75819820	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATXN10--ZNF521	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATXN10^ENSG00000130638.17	chr22:45843733:+	ZNF521^ENSG00000198795.11	chr18:25322187:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2344:48860:9884	.	YES_LDAS	0.0034	GT	1.3996	AG	1.7056	"[""INTERCHROMOSOMAL[chr22--chr18]""]"	chr22:45843733-chr18:25322187	False			0	Read count too low: 1 < 8	FAIL	1
ATXN10--ITGB5	1	0	1.0	0.0	ONLY_REF_SPLICE	ATXN10^ENSG00000130638.17	chr22:45693078:+	ITGB5^ENSG00000082781.12	chr3:124873531:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1113:9689:3186	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9329	"[""INTERCHROMOSOMAL[chr22--chr3]""]"	chr22:45693078-chr3:124873531	False			0	Read count too low: 1 < 8	FAIL	1
ATP8B4--DBN1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATP8B4^ENSG00000104043.15	chr15:50182465:-	DBN1^ENSG00000113758.13	chr5:177466962:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1371:18296:3999	.	NO_LDAS	0.0034	GC	1.5058	AG	1.4566	"[""INTERCHROMOSOMAL[chr15--chr5]""]"	chr15:50182465-chr5:177466962	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATP6V1B2--PIKFYVE	1	0	1.0	0.0	ONLY_REF_SPLICE	ATP6V1B2^ENSG00000147416.11	chr8:20225406:+	PIKFYVE^ENSG00000115020.17	chr2:208285726:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:9244:8413	.	NO_LDAS	0.0034	GT	1.9329	AG	1.9656	"[""INTERCHROMOSOMAL[chr8--chr2]""]"	chr8:20225406-chr2:208285726	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
ATP6V1B2--GSK3B	1	0	1.0	0.0	ONLY_REF_SPLICE	ATP6V1B2^ENSG00000147416.11	chr8:20225406:+	GSK3B^ENSG00000082701.17	chr3:120002239:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1266:13531:13625	.	NO_LDAS	0.0034	GT	1.9329	AG	1.5219	"[""INTERCHROMOSOMAL[chr8--chr3]""]"	chr8:20225406-chr3:120002239	False			0	Read count too low: 1 < 8	FAIL	1
ATP5PD--RYR3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATP5PD^ENSG00000167863.12	chr17:75039209:-	RYR3^ENSG00000198838.14	chr15:33821279:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1378:14154:12630	.	NO_LDAS	0.0034	GT	1.3996	AG	1.4716	"[""INTERCHROMOSOMAL[chr17--chr15]""]"	chr17:75039209-chr15:33821279	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATP5PB--DMAP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATP5PB^ENSG00000116459.11	chr1:111454356:+	DMAP1^ENSG00000178028.14	chr1:44218320:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2290:21403:24681	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8256	"[""INTRACHROMOSOMAL[chr1:67.23Mb]""]"	chr1:111454356-chr1:44218320	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATP5F1AP4--ATP5F1A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATP5F1AP4^ENSG00000258877.2	chr14:62605413:-	ATP5F1A^ENSG00000152234.16	chr18:46089996:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2226:39929:2541	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""INTERCHROMOSOMAL[chr14--chr18]""]"	chr14:62605413-chr18:46089996	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
ATP2C2--VPS8	1	0	1.0	0.0	ONLY_REF_SPLICE	ATP2C2^ENSG00000064270.13	chr16:84425801:+	VPS8^ENSG00000156931.16	chr3:184993983:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1372:21249:19510	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr16--chr3]""]"	chr16:84425801-chr3:184993983	False			0	Read count too low: 1 < 8	FAIL	1
ATP1A2--ATP1A1	1	0	1.0	0.0	ONLY_REF_SPLICE	ATP1A2^ENSG00000018625.15	chr1:160129400:+	ATP1A1^ENSG00000163399.16	chr1:116393531:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1141:7359:23560	.	NO_LDAS	0.0034	GT	1.6895	AG	1.7968	"[""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr1:43.71Mb]""]"	chr1:160129400-chr1:116393531	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ATM--NPAT	1	0	1.0	0.0	ONLY_REF_SPLICE	ATM^ENSG00000149311.19	chr11:108304852:+	NPAT^ENSG00000149308.17	chr11:108190500:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1252:9519:6619	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""INTRACHROMOSOMAL[chr11:0.00Mb]"",""LOCAL_INVERSION:+:-:[194]""]"	chr11:108304852-chr11:108190500	False			0	Read count too low: 1 < 8	FAIL	1
ATG2B--TUT7	1	0	0.25	0.0	INCL_NON_REF_SPLICE	ATG2B^ENSG00000066739.12	chr14:96306714:-	TUT7^ENSG00000083223.18	chr9:86323187:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1409:31831:28702	.	NO_LDAS	0.0009	GT	1.8062	AG	0.9968	"[""INTERCHROMOSOMAL[chr14--chr9]""]"	chr14:96306714-chr9:86323187	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATG2B--PPIP5K2	1	0	0.25	0.0	INCL_NON_REF_SPLICE	ATG2B^ENSG00000066739.12	chr14:96306714:-	PPIP5K2^ENSG00000145725.20	chr5:103208988:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1409:31831:28702	.	NO_LDAS	0.0009	GT	1.8062	AG	0.9968	"[""INTERCHROMOSOMAL[chr14--chr5]""]"	chr14:96306714-chr5:103208988	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATG2B--PELP1	1	0	0.25	0.0	INCL_NON_REF_SPLICE	ATG2B^ENSG00000066739.12	chr14:96306714:-	PELP1^ENSG00000141456.16	chr17:4672137:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1409:31831:28702	.	NO_LDAS	0.0009	GT	1.8062	AG	0.9968	"[""INTERCHROMOSOMAL[chr14--chr17]""]"	chr14:96306714-chr17:4672137	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATG2B--DCAF8L2	1	0	0.25	0.0	INCL_NON_REF_SPLICE	ATG2B^ENSG00000066739.12	chr14:96306714:-	DCAF8L2^ENSG00000189186.10	chrX:27747322:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1409:31831:28702	.	NO_LDAS	0.0009	GT	1.8062	AG	0.9968	"[""INTERCHROMOSOMAL[chr14--chrX]""]"	chr14:96306714-chrX:27747322	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATG2A--DPYSL3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATG2A^ENSG00000110046.13	chr11:64908991:-	DPYSL3^ENSG00000113657.13	chr5:147418570:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1368:46474:18894	.	NO_LDAS	0.0034	GT	1.7056	AG	1.9656	"[""INTERCHROMOSOMAL[chr11--chr5]""]"	chr11:64908991-chr5:147418570	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATF7IP--YAP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATF7IP^ENSG00000171681.12	chr12:14466287:+	YAP1^ENSG00000137693.14	chr11:102162456:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1345:33611:27413	.	NO_LDAS	0.0034	GT	1.9329	AG	1.9086	"[""INTERCHROMOSOMAL[chr12--chr11]""]"	chr12:14466287-chr11:102162456	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATF6B--LINC01842	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATF6B^ENSG00000213676.13	chr6:32117323:-	LINC01842^ENSG00000267147.2	chr19:14333791:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1371:51498:4979	.	NO_LDAS	0.0034	GT	1.5656	AG	1.9899	"[""INTERCHROMOSOMAL[chr6--chr19]""]"	chr6:32117323-chr19:14333791	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATF6B--KIAA2026	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATF6B^ENSG00000213676.13	chr6:32116480:-	KIAA2026^ENSG00000183354.12	chr9:5968772:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1484:29258:3284	.	NO_LDAS	0.0034	GT	1.8295	AG	1.9219	"[""INTERCHROMOSOMAL[chr6--chr9]""]"	chr6:32116480-chr9:5968772	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATF4P1--PSME1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ATF4P1^ENSG00000213338.3	chrX:154622437:-	PSME1^ENSG00000092010.15	chr14:24137700:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1215:26686:6171	.	NO_LDAS	0.0017	GT	0.9968	AG	1.5301	"[""INTERCHROMOSOMAL[chrX--chr14]""]"	chrX:154622437-chr14:24137700	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ATF3--NENF	1	0	1.0	0.0	ONLY_REF_SPLICE	ATF3^ENSG00000162772.17	chr1:212608930:+	NENF^ENSG00000117691.10	chr1:212444339:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1230:9325:28086	.	YES_LDAS	0.0034	GT	1.6729	AG	1.8256	"[""INTRACHROMOSOMAL[chr1:0.12Mb]""]"	chr1:212608930-chr1:212444339	False			0	Read count too low: 1 < 8	FAIL	1
ATF3--EIF4BP9	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ATF3^ENSG00000162772.17	chr1:212618238:+	EIF4BP9^ENSG00000237294.1	chrX:66076321:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1201:43877:5428	.	NO_LDAS	0.0034	GT	1.9086	AG	1.5329	"[""INTERCHROMOSOMAL[chr1--chrX]""]"	chr1:212618238-chrX:66076321	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ASPH--SMIM4	1	0	1.0	0.0	ONLY_REF_SPLICE	ASPH^ENSG00000198363.18	chr8:61643386:-	SMIM4^ENSG00000168273.8	chr3:52540424:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2241:12828:13919	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""INTERCHROMOSOMAL[chr8--chr3]""]"	chr8:61643386-chr3:52540424	False			0	Read count too low: 1 < 8	FAIL	1
ASPH--LINC01588	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ASPH^ENSG00000198363.18	chr8:61680968:-	LINC01588^ENSG00000214900.11	chr14:50042299:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2455:41312:6451	.	NO_LDAS	0.0034	GC	1.8323	AG	1.7056	"[""INTERCHROMOSOMAL[chr8--chr14]""]"	chr8:61680968-chr14:50042299	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ASPG--UBAP1L	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ASPG^ENSG00000166183.16	chr14:104092941:+	UBAP1L^ENSG00000246922.9	chr15:65102335:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1277:40633:2359	.	NO_LDAS	0.0017	GT	1.5219	AG	0.9183	"[""INTERCHROMOSOMAL[chr14--chr15]""]"	chr14:104092941-chr15:65102335	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ASNSD1--ANKAR	1	0	1.0	0.0	ONLY_REF_SPLICE	ASNSD1^ENSG00000138381.10	chr2:189667945:+	ANKAR^ENSG00000151687.14	chr2:189689527:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1130:48707:6171	.	NO_LDAS	0.0034	GT	1.5329	AG	1.7465	"[""INTRACHROMOSOMAL[chr2:0.00Mb]"",""NEIGHBORS[3459]""]"	chr2:189667945-chr2:189689527	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
ARSL--FAM110A	1	0	0.25	0.0	INCL_NON_REF_SPLICE	ARSL^ENSG00000157399.16	chrX:2949444:-	FAM110A^ENSG00000125898.13	chr20:844833:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2206:12455:27259	.	NO_LDAS	0.0009	GC	1.3383	AG	1.053	"[""INTERCHROMOSOMAL[chrX--chr20]""]"	chrX:2949444-chr20:844833	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARRB2--PRPH	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARRB2^ENSG00000141480.18	chr17:4717752:+	PRPH^ENSG00000135406.14	chr12:49297393:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2250:37777:21206	.	NO_LDAS	0.0034	GT	1.371	AG	1.9086	"[""INTERCHROMOSOMAL[chr17--chr12]""]"	chr17:4717752-chr12:49297393	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARL8B--TMEM108	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARL8B^ENSG00000134108.14	chr3:5122288:+	TMEM108^ENSG00000144868.14	chr3:133381068:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1494:31346:20743	.	NO_LDAS	0.0034	GT	1.4256	AG	1.5656	"[""INTRACHROMOSOMAL[chr3:127.86Mb]""]"	chr3:5122288-chr3:133381068	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARL6IP4--ELOVL3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARL6IP4^ENSG00000182196.13	chr12:122980433:+	ELOVL3^ENSG00000119915.5	chr10:102229492:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1251:32535:26362	.	NO_LDAS	0.0034	GT	1.231	AG	1.2366	"[""INTERCHROMOSOMAL[chr12--chr10]""]"	chr12:122980433-chr10:102229492	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARL4D--RAB11FIP3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARL4D^ENSG00000175906.5	chr17:43400071:+	RAB11FIP3^ENSG00000090565.17	chr16:519760:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1486:25521:10570	.	NO_LDAS	0.0034	GT	1.7819	AG	1.9329	"[""INTERCHROMOSOMAL[chr17--chr16]""]"	chr17:43400071-chr16:519760	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARID5B--IL17RD	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARID5B^ENSG00000150347.17	chr10:62091557:+	IL17RD^ENSG00000144730.19	chr3:57120313:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2279:41523:19258	.	NO_LDAS	0.0034	GT	1.9329	AG	1.6402	"[""INTERCHROMOSOMAL[chr10--chr3]""]"	chr10:62091557-chr3:57120313	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARID4A--ARHGEF35-AS1	1	0	0.5	0.0	ONLY_REF_SPLICE	ARID4A^ENSG00000032219.19	chr14:58298700:+	ARHGEF35-AS1^ENSG00000244198.7	chr7:144207693:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2126:31119:15783	.	YES_LDAS	0.0017	GT	1.8892	AG	1.7819	"[""INTERCHROMOSOMAL[chr14--chr7]""]"	chr14:58298700-chr7:144207693	False			0	Read count too low: 1 < 8	FAIL	1
ARHGEF40--PCYT2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARHGEF40^ENSG00000165801.10	chr14:21081016:+	PCYT2^ENSG00000185813.11	chr17:81908972:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1211:11032:2906	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTERCHROMOSOMAL[chr14--chr17]""]"	chr14:21081016-chr17:81908972	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARHGEF17--PAF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ARHGEF17^ENSG00000110237.5	chr11:73367732:+	PAF1^ENSG00000006712.15	chr19:39386398:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1150:23587:2709	.	NO_LDAS	0.0034	GT	1.9086	AG	1.3996	"[""INTERCHROMOSOMAL[chr11--chr19]""]"	chr11:73367732-chr19:39386398	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARHGAP8--RNF213	1	0	1.0	0.0	ONLY_REF_SPLICE	ARHGAP8^ENSG00000241484.10	chr22:44786606:+	RNF213^ENSG00000173821.19	chr17:80317188:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1140:18361:18403	.	YES_LDAS	0.0034	GT	1.8892	AG	1.6729	"[""INTERCHROMOSOMAL[chr22--chr17]""]"	chr22:44786606-chr17:80317188	False			0	Read count too low: 1 < 8	FAIL	1
ARHGAP42--PICALM	1	0	1.0	0.0	ONLY_REF_SPLICE	ARHGAP42^ENSG00000165895.19	chr11:100687832:+	PICALM^ENSG00000073921.18	chr11:86031611:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1438:40204:14676	.	YES_LDAS	0.0034	GT	1.6402	AG	1.9086	"[""INTRACHROMOSOMAL[chr11:14.62Mb]""]"	chr11:100687832-chr11:86031611	False			0	Read count too low: 1 < 8	FAIL	1
ARHGAP40--ARL8B	1	0	1.0	0.0	ONLY_REF_SPLICE	ARHGAP40^ENSG00000124143.10	chr20:38623558:+	ARL8B^ENSG00000134108.14	chr3:5178664:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1228:41159:9323	.	YES_LDAS	0.0034	GT	1.9086	AG	1.8256	"[""INTERCHROMOSOMAL[chr20--chr3]""]"	chr20:38623558-chr3:5178664	False			0	Read count too low: 1 < 8	FAIL	1
ARHGAP15--KIDINS220	1	0	1.0	0.0	ONLY_REF_SPLICE	ARHGAP15^ENSG00000075884.14	chr2:143519364:+	KIDINS220^ENSG00000134313.16	chr2:8770832:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2467:47793:14087	.	YES_LDAS	0.0034	GT	1.7819	AG	1.9086	"[""INTRACHROMOSOMAL[chr2:134.25Mb]""]"	chr2:143519364-chr2:8770832	False			0	Read count too low: 1 < 8	FAIL	1
ARFGEF3--NF1P4	1	0	0.25	0.0	INCL_NON_REF_SPLICE	ARFGEF3^ENSG00000112379.9	chr6:138335188:+	NF1P4^ENSG00000258027.2	chr14:19498523:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2177:31054:27974	.	NO_LDAS	0.0009	GT	1.8062	AG	1.9656	"[""INTERCHROMOSOMAL[chr6--chr14]""]"	chr6:138335188-chr14:19498523	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ARAP1--MEIS3	1	0	1.0	0.0	ONLY_REF_SPLICE	ARAP1^ENSG00000186635.15	chr11:72721850:-	MEIS3^ENSG00000105419.18	chr19:47417350:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1210:31629:1196	.	YES_LDAS	0.0034	GT	1.8295	AG	1.9656	"[""INTERCHROMOSOMAL[chr11--chr19]""]"	chr11:72721850-chr19:47417350	False			0	Read count too low: 1 < 8	FAIL	1
APTX--LRIG1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	APTX^ENSG00000137074.20	chr9:32987967:-	LRIG1^ENSG00000144749.14	chr3:66386093:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2469:6752:23938	.	NO_LDAS	0.0017	AT	1.5058	AC	1.6729	"[""INTERCHROMOSOMAL[chr9--chr3]""]"	chr9:32987967-chr3:66386093	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
APLP2--VIRMA	1	0	1.0	0.0	INCL_NON_REF_SPLICE	APLP2^ENSG00000084234.18	chr11:130121799:+	VIRMA^ENSG00000164944.12	chr8:94529112:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1142:27276:28716	.	NO_LDAS	0.0034	GT	1.7819	AG	1.2729	"[""INTERCHROMOSOMAL[chr11--chr8]""]"	chr11:130121799-chr8:94529112	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
APLP2--KRT18P14	1	0	0.07	0.0	INCL_NON_REF_SPLICE	APLP2^ENSG00000084234.18	chr11:130121799:+	KRT18P14^ENSG00000186082.9	chr11:35860878:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1492:40067:17100	.	NO_LDAS	0.0002	GT	1.7819	AG	1.7819	"[""INTRACHROMOSOMAL[chr11:94.21Mb]""]"	chr11:130121799-chr11:35860878	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AP1G2--PHF23	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AP1G2^ENSG00000213983.12	chr14:23564203:-	PHF23^ENSG00000040633.13	chr17:7236169:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2167:51789:24457	.	NO_LDAS	0.0017	GC	1.2366	AG	0.9968	"[""INTERCHROMOSOMAL[chr14--chr17]""]"	chr14:23564203-chr17:7236169	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AP1B1--INTS5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AP1B1^ENSG00000100280.17	chr22:29334265:-	INTS5^ENSG00000185085.2	chr11:62647597:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1334:29719:22635	.	NO_LDAS	0.0034	GT	1.9086	AG	1.6895	"[""INTERCHROMOSOMAL[chr22--chr11]""]"	chr22:29334265-chr11:62647597	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AP006222.1--LRRFIP1	1	0	1.0	0.0	ONLY_REF_SPLICE	AP006222.1^ENSG00000228463.10	chr1:289266:-	LRRFIP1^ENSG00000124831.19	chr2:237772081:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1106:39994:16161	.	NO_LDAS	0.0034	GT	1.8892	AG	1.5546	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:289266-chr2:237772081	False			0	Read count too low: 1 < 8	FAIL	1
AP003555.2--PPFIA1	1	0	1.0	0.0	ONLY_REF_SPLICE	AP003555.2^ENSG00000255191.1	chr11:69986166:+	PPFIA1^ENSG00000131626.19	chr11:70354301:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1487:4471:18193	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8892	"[""INTRACHROMOSOMAL[chr11:0.25Mb]""]"	chr11:69986166-chr11:70354301	False			0	Read count too low: 1 < 8	FAIL	1
AP000787.1--SLC22A13	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AP000787.1^ENSG00000245552.7	chr11:95151640:+	SLC22A13^ENSG00000172940.13	chr3:38275063:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1432:39921:27385	.	NO_LDAS	0.0034	GT	1.8295	AG	1.7968	"[""INTERCHROMOSOMAL[chr11--chr3]""]"	chr11:95151640-chr3:38275063	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AP000662.1--CLP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AP000662.1^ENSG00000254602.2	chr11:57638697:+	CLP1^ENSG00000172409.7	chr11:57659455:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2243:21638:17408	.	YES_LDAS	0.0034	GT	1.9329	AG	1.7819	"[""INTRACHROMOSOMAL[chr11:0.00Mb]"",""NEIGHBORS_OVERLAP:+:+:[4602]""]"	chr11:57638697-chr11:57659455	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
AP000347.1--SFI1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AP000347.1^ENSG00000272578.5	chr22:23659865:-	SFI1^ENSG00000198089.16	chr22:31561290:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1131:4641:24793	.	YES_LDAS	0.0034	GT	1.9329	AG	1.7232	"[""INTRACHROMOSOMAL[chr22:7.77Mb]""]"	chr22:23659865-chr22:31561290	False			0	Read count too low: 1 < 8	FAIL	1
AOX3P--NBPF19	1	0	0.2	0.0	INCL_NON_REF_SPLICE	AOX3P^ENSG00000244301.6	chr2:200717403:+	NBPF19^ENSG00000271383.7	chr1:149537100:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:35868:4363	.	NO_LDAS	0.0007	GT	1.8295	AG	1.8892	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:200717403-chr1:149537100	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AOX3P--NBPF19	1	0	0.2	0.0	INCL_NON_REF_SPLICE	AOX3P^ENSG00000244301.6	chr2:200717403:+	NBPF19^ENSG00000271383.7	chr1:149532345:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:35868:4363	.	NO_LDAS	0.0007	GT	1.8295	AG	1.8892	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:200717403-chr1:149532345	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AOX3P--NBPF19	1	0	0.2	0.0	INCL_NON_REF_SPLICE	AOX3P^ENSG00000244301.6	chr2:200717403:+	NBPF19^ENSG00000271383.7	chr1:149527614:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:35868:4363	.	NO_LDAS	0.0007	GT	1.8295	AG	1.8892	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:200717403-chr1:149527614	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AOX3P--NBPF19	1	0	0.2	0.0	INCL_NON_REF_SPLICE	AOX3P^ENSG00000244301.6	chr2:200717403:+	NBPF19^ENSG00000271383.7	chr1:149522865:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:35868:4363	.	NO_LDAS	0.0007	GT	1.8295	AG	1.8892	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:200717403-chr1:149522865	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AOX3P--NBPF19	1	0	0.2	0.0	INCL_NON_REF_SPLICE	AOX3P^ENSG00000244301.6	chr2:200717403:+	NBPF19^ENSG00000271383.7	chr1:149518110:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:35868:4363	.	NO_LDAS	0.0007	GT	1.8295	AG	1.8892	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:200717403-chr1:149518110	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AOPEP--RNF38	1	0	1.0	0.0	ONLY_REF_SPLICE	AOPEP^ENSG00000148120.17	chr9:95080780:+	RNF38^ENSG00000137075.18	chr9:36376127:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2139:16096:10444	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8892	"[""INTRACHROMOSOMAL[chr9:58.24Mb]""]"	chr9:95080780-chr9:36376127	False			0	Read count too low: 1 < 8	FAIL	1
ANXA8L1--AOPEP	1	0	1.0	0.0	ONLY_REF_SPLICE	ANXA8L1^ENSG00000264230.9	chr10:46375872:+	AOPEP^ENSG00000148120.17	chr9:94800757:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1258:45997:28072	.	NO_LDAS	0.0034	GT	1.8295	AG	1.5628	"[""INTERCHROMOSOMAL[chr10--chr9]""]"	chr10:46375872-chr9:94800757	False			0	Read count too low: 1 < 8	FAIL	1
ANXA8--LANCL1-AS1	1	0	0.5	0.0	INCL_NON_REF_SPLICE	ANXA8^ENSG00000265190.7	chr10:47474305:-	LANCL1-AS1^ENSG00000234281.5	chr2:210429367:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1382:30520:23462	.	NO_LDAS	0.0017	GT	1.9656	AG	1.3996	"[""INTERCHROMOSOMAL[chr10--chr2]""]"	chr10:47474305-chr2:210429367	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ANXA2--MAPK11	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ANXA2^ENSG00000182718.18	chr15:60402799:-	MAPK11^ENSG00000185386.15	chr22:50265027:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:18693:18838	.	NO_LDAS	0.0034	GT	1.6895	AG	1.9656	"[""INTERCHROMOSOMAL[chr15--chr22]""]"	chr15:60402799-chr22:50265027	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ANXA1--BAZ2B	1	0	1.0	0.0	ONLY_REF_SPLICE	ANXA1^ENSG00000135046.14	chr9:73165209:+	BAZ2B^ENSG00000123636.18	chr2:159332686:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2250:7504:15881	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9329	"[""INTERCHROMOSOMAL[chr9--chr2]""]"	chr9:73165209-chr2:159332686	False			0	Read count too low: 1 < 8	FAIL	1
ANPEP--ERAP1	1	0	1.0	0.0	ONLY_REF_SPLICE	ANPEP^ENSG00000166825.15	chr15:89804253:-	ERAP1^ENSG00000164307.13	chr5:96793513:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1150:35124:18403	.	YES_LDAS	0.0034	GT	1.7819	AG	1.8323	"[""INTERCHROMOSOMAL[chr15--chr5]""]"	chr15:89804253-chr5:96793513	False			0	Read count too low: 1 < 8	FAIL	1
ANKZF1--KDM5B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ANKZF1^ENSG00000163516.14	chr2:219229799:+	KDM5B^ENSG00000117139.18	chr1:202777094:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1296:46369:13135	.	NO_LDAS	0.0034	GT	1.5628	AG	1.9329	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:219229799-chr1:202777094	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ANKRD54--EIF3L	1	0	1.0	0.0	ONLY_REF_SPLICE	ANKRD54^ENSG00000100124.15	chr22:37843911:-	EIF3L^ENSG00000100129.18	chr22:37886765:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1292:29072:1168	.	YES_LDAS	0.0034	GT	1.7465	AG	1.9086	"[""INTRACHROMOSOMAL[chr22:0.00Mb]"",""NEIGHBORS_OVERLAP:-:+:[459]""]"	chr22:37843911-chr22:37886765	False			0	Read count too low: 1 < 8	FAIL	1
ANKRD44--NCK2	1	0	1.0	0.0	ONLY_REF_SPLICE	ANKRD44^ENSG00000065413.20	chr2:197099816:-	NCK2^ENSG00000071051.14	chr2:105855048:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:14057:11481	.	YES_LDAS	0.0034	GT	1.7819	AG	1.8295	"[""INTRACHROMOSOMAL[chr2:91.07Mb]""]"	chr2:197099816-chr2:105855048	False			0	Read count too low: 1 < 8	FAIL	1
ANKRD27--CRIP1P2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ANKRD27^ENSG00000105186.16	chr19:32615686:-	CRIP1P2^ENSG00000238225.1	chr3:25686905:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1303:27398:25059	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr19--chr3]""]"	chr19:32615686-chr3:25686905	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ANKRD26--ANKRD36BP2	1	0	1.0	0.0	ONLY_REF_SPLICE	ANKRD26^ENSG00000107890.17	chr10:27053320:-	ANKRD36BP2^ENSG00000230006.7	chr2:88782734:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2467:9244:26881	.	NO_LDAS	0.0034	GT	1.6895	AG	1.9329	"[""INTERCHROMOSOMAL[chr10--chr2]""]"	chr10:27053320-chr2:88782734	False			0	Read count too low: 1 < 8	FAIL	1
ANKRD16--SREBF2	1	0	0.14	0.0	INCL_NON_REF_SPLICE	ANKRD16^ENSG00000134461.16	chr10:5889067:-	SREBF2^ENSG00000198911.12	chr22:41833304:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2153:46814:11691	.	NO_LDAS	0.0005	GT	1.1589	AG	1.8892	"[""INTERCHROMOSOMAL[chr10--chr22]""]"	chr10:5889067-chr22:41833304	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ANKLE2--CCDC57	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ANKLE2^ENSG00000176915.15	chr12:132756666:-	CCDC57^ENSG00000176155.19	chr17:82188419:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1191:44815:13891	.	YES_LDAS	0.0034	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr17]""]"	chr12:132756666-chr17:82188419	False			0	Read count too low: 1 < 8	FAIL	1
ANKHD1--PIWIL2	1	0	1.0	0.0	ONLY_REF_SPLICE	ANKHD1^ENSG00000131503.21	chr5:140402273:+	PIWIL2^ENSG00000197181.12	chr8:22279341:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1153:4924:1939	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8295	"[""INTERCHROMOSOMAL[chr5--chr8]""]"	chr5:140402273-chr8:22279341	False			0	Read count too low: 1 < 8	FAIL	1
ANK2--LARP7	1	0	1.0	0.0	ONLY_REF_SPLICE	ANK2^ENSG00000145362.20	chr4:113293538:+	LARP7^ENSG00000174720.16	chr4:112644668:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1166:20812:11972	.	NO_LDAS	0.0034	GT	0.971	AG	1.6402	"[""INTRACHROMOSOMAL[chr4:0.16Mb]""]"	chr4:113293538-chr4:112644668	False			0	Read count too low: 1 < 8	FAIL	1
AMFR--ATAT1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AMFR^ENSG00000159461.15	chr16:56385919:-	ATAT1^ENSG00000137343.18	chr6:30646756:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1418:14138:29333	.	NO_LDAS	0.0034	GT	1.9656	AG	1.9086	"[""INTERCHROMOSOMAL[chr16--chr6]""]"	chr16:56385919-chr6:30646756	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AMD1--LUC7L2	1	0	1.0	0.0	ONLY_REF_SPLICE	AMD1^ENSG00000123505.19	chr6:110875215:+	LUC7L2^ENSG00000146963.18	chr7:139374401:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2405:43456:23700	.	NO_LDAS	0.0034	GT	1.8892	AG	1.7968	"[""INTERCHROMOSOMAL[chr6--chr7]""]"	chr6:110875215-chr7:139374401	False			0	Read count too low: 1 < 8	FAIL	1
ALS2--SUPT20HL1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ALS2^ENSG00000003393.16	chr2:201710991:-	SUPT20HL1^ENSG00000223731.3	chrX:24364806:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2275:1283:13485	.	NO_LDAS	0.0034	GT	1.231	AG	1.7968	"[""INTERCHROMOSOMAL[chr2--chrX]""]"	chr2:201710991-chrX:24364806	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ALMS1--TNRC6B	1	0	1.0	0.0	ONLY_REF_SPLICE	ALMS1^ENSG00000116127.19	chr2:73419318:+	TNRC6B^ENSG00000100354.21	chr22:40310817:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1172:41167:22985	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9086	"[""INTERCHROMOSOMAL[chr2--chr22]""]"	chr2:73419318-chr22:40310817	False			0	Read count too low: 1 < 8	FAIL	1
ALMS1--DHX15	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ALMS1^ENSG00000116127.19	chr2:73534949:+	DHX15^ENSG00000109606.13	chr4:24576502:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2152:35172:26054	.	YES_LDAS	0.0034	GT	1.9086	AG	1.4566	"[""INTERCHROMOSOMAL[chr2--chr4]""]"	chr2:73534949-chr4:24576502	False			0	Read count too low: 1 < 8	FAIL	1
AL645638.1--UBE2D3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL645638.1^ENSG00000232576.2	chrX:88908526:+	UBE2D3^ENSG00000109332.20	chr4:102799500:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2215:12819:27105	.	NO_LDAS	0.0034	GT	1.7819	AG	1.2419	"[""INTERCHROMOSOMAL[chrX--chr4]""]"	chrX:88908526-chr4:102799500	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL589740.1--E2F4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL589740.1^ENSG00000271860.7	chr6:97816752:+	E2F4^ENSG00000205250.9	chr16:67195909:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2158:34153:20785	.	NO_LDAS	0.0034	GT	1.8062	AG	1.585	"[""INTERCHROMOSOMAL[chr6--chr16]""]"	chr6:97816752-chr16:67195909	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL589182.3--SDCBP2	1	0	0.33	0.0	INCL_NON_REF_SPLICE	AL589182.3^ENSG00000286614.1	chr14:19072549:+	SDCBP2^ENSG00000125775.15	chr20:1312624:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2209:30755:16778	.	NO_LDAS	0.0011	GT	1.8062	AG	1.9086	"[""INTERCHROMOSOMAL[chr14--chr20]""]"	chr14:19072549-chr20:1312624	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL391807.1--RPGRIP1L	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL391807.1^ENSG00000230910.4	chr6:68632172:-	RPGRIP1L^ENSG00000103494.16	chr16:53637809:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2166:49346:18740	.	NO_LDAS	0.0034	GT	1.3753	AG	1.6402	"[""INTERCHROMOSOMAL[chr6--chr16]""]"	chr6:68632172-chr16:53637809	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL391056.1--ATAD5	1	0	1.0	0.0	ONLY_REF_SPLICE	AL391056.1^ENSG00000227619.3	chr9:129582768:+	ATAD5^ENSG00000176208.9	chr17:30837206:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:43780:26558	.	NO_LDAS	0.0034	GT	1.9329	AG	1.8295	"[""INTERCHROMOSOMAL[chr9--chr17]""]"	chr9:129582768-chr17:30837206	False			0	Read count too low: 1 < 8	FAIL	1
AL390860.1--TRIM58	1	0	1.0	0.0	ONLY_REF_SPLICE	AL390860.1^ENSG00000235749.3	chr1:247640433:+	TRIM58^ENSG00000162722.9	chr1:247860617:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1229:2739:22341	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr1:0.10Mb]"",""NEIGHBORS[95932]""]"	chr1:247640433-chr1:247860617	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
AL390860.1--TRIM58	1	0	1.0	0.0	ONLY_REF_SPLICE	AL390860.1^ENSG00000235749.3	chr1:247640429:+	TRIM58^ENSG00000162722.9	chr1:247860617:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1366:13248:17394	.	YES_LDAS	0.0034	GT	1.9219	AG	1.9656	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr1:0.10Mb]"",""NEIGHBORS[95932]""]"	chr1:247640429-chr1:247860617	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
AL390860.1--TADA1	1	0	1.0	0.0	ONLY_REF_SPLICE	AL390860.1^ENSG00000235749.3	chr1:247640433:+	TADA1^ENSG00000152382.6	chr1:166858281:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1128:40625:15741	.	YES_LDAS	0.0034	GT	1.9656	AG	1.6895	"[""INTRACHROMOSOMAL[chr1:80.76Mb]""]"	chr1:247640433-chr1:166858281	False			0	Read count too low: 1 < 8	FAIL	1
AL365356.2--RPL23AP42	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL365356.2^ENSG00000228685.1	chr10:5625040:+	RPL23AP42^ENSG00000234851.4	chr3:161429486:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1405:36903:17114	.	NO_LDAS	0.0034	GT	1.2729	AG	1.8062	"[""INTERCHROMOSOMAL[chr10--chr3]""]"	chr10:5625040-chr3:161429486	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
AL359258.2--NPAS2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL359258.2^ENSG00000260879.1	chr1:108199964:+	NPAS2^ENSG00000170485.17	chr2:100820245:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1238:17463:4321	.	NO_LDAS	0.0034	GT	1.6049	AG	0.971	"[""INTERCHROMOSOMAL[chr1--chr2]""]"	chr1:108199964-chr2:100820245	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL359195.2--NPIPB10P	1	0	0.12	0.0	INCL_NON_REF_SPLICE	AL359195.2^ENSG00000279359.1	chr10:80251084:+	NPIPB10P^ENSG00000196796.5	chr16:29052072:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1272:27932:23238	.	NO_LDAS	0.0004	GT	1.7465	AG	1.8892	"[""INTERCHROMOSOMAL[chr10--chr16]""]"	chr10:80251084-chr16:29052072	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL160313.1--HHIPL1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL160313.1^ENSG00000247970.2	chr14:99625107:+	HHIPL1^ENSG00000182218.10	chr14:99652224:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1364:8135:25045	.	YES_LDAS	0.0034	GT	1.8323	AG	1.9899	"[""INTRACHROMOSOMAL[chr14:0.02Mb]"",""NEIGHBORS[19389]""]"	chr14:99625107-chr14:99652224	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
AL139383.1--STARD13	1	0	1.0	0.0	ONLY_REF_SPLICE	AL139383.1^ENSG00000230490.3	chr13:33439691:-	STARD13^ENSG00000133121.21	chr13:33167622:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1158:32462:28534	.	YES_LDAS	0.0034	GT	1.6895	AG	1.6402	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr13:0.00Mb]"",""NEIGHBORS[4576]""]"	chr13:33439691-chr13:33167622	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
AL139353.1--ZNF675	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL139353.1^ENSG00000203546.7	chr14:31453275:-	ZNF675^ENSG00000197372.10	chr19:23534298:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2179:13952:12560	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9656	"[""INTERCHROMOSOMAL[chr14--chr19]""]"	chr14:31453275-chr19:23534298	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
AL135910.1--AL357141.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL135910.1^ENSG00000272848.2	chr6:169452245:-	AL357141.1^ENSG00000287933.1	chr6:116046482:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1401:9082:14073	.	YES_LDAS	0.0034	GT	1.8892	AG	1.7056	"[""INTRACHROMOSOMAL[chr6:53.38Mb]""]"	chr6:169452245-chr6:116046482	False			0	Read count too low: 1 < 8	FAIL	1
AL135818.1--SNX19	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL135818.1^ENSG00000258875.6	chr14:91244485:+	SNX19^ENSG00000120451.11	chr11:130906133:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1146:10312:22677	.	NO_LDAS	0.0034	GT	1.7968	AG	1.9899	"[""INTERCHROMOSOMAL[chr14--chr11]""]"	chr14:91244485-chr11:130906133	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
AL132712.2--PLCZ1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL132712.2^ENSG00000287346.1	chr14:103875093:+	PLCZ1^ENSG00000139151.16	chr12:18701641:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1415:12043:8721	.	NO_LDAS	0.0034	GT	1.6402	AG	0.9183	"[""INTERCHROMOSOMAL[chr14--chr12]""]"	chr14:103875093-chr12:18701641	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AL121974.1--ZNF808	1	0	1.0	0.0	ONLY_REF_SPLICE	AL121974.1^ENSG00000235122.4	chr6:49811593:+	ZNF808^ENSG00000198482.14	chr19:52553107:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1196:12682:25269	.	YES_LDAS	0.0034	GT	1.8892	AG	1.585	"[""INTERCHROMOSOMAL[chr6--chr19]""]"	chr6:49811593-chr19:52553107	False			0	Read count too low: 1 < 8	FAIL	1
AL050309.1--KLF8	1	0	1.0	0.0	ONLY_REF_SPLICE	AL050309.1^ENSG00000227486.2	chrX:55908800:+	KLF8^ENSG00000102349.18	chrX:56265180:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1327:5280:18417	.	YES_LDAS	0.0034	GT	1.8062	AG	1.7465	"[""INTRACHROMOSOMAL[chrX:0.02Mb]"",""NEIGHBORS[23085]""]"	chrX:55908800-chrX:56265180	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
AL050309.1--KLF8	1	0	1.0	0.0	ONLY_REF_SPLICE	AL050309.1^ENSG00000227486.2	chrX:55908800:+	KLF8^ENSG00000102349.18	chrX:56250231:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2312:33077:2415	.	YES_LDAS	0.0034	GT	1.8062	AG	1.7968	"[""INTRACHROMOSOMAL[chrX:0.02Mb]"",""NEIGHBORS[23085]""]"	chrX:55908800-chrX:56250231	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
AL035699.1--PAPSS1	1	0	1.0	0.0	ONLY_REF_SPLICE	AL035699.1^ENSG00000288529.1	chr6:133953425:+	PAPSS1^ENSG00000138801.9	chr4:107701285:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1256:43238:4125	.	YES_LDAS	0.0034	GT	1.4716	AG	1.7056	"[""INTERCHROMOSOMAL[chr6--chr4]""]"	chr6:133953425-chr4:107701285	False			0	Read count too low: 1 < 8	FAIL	1
AL035587.1--GNMT	1	0	1.0	0.0	ONLY_REF_SPLICE	AL035587.1^ENSG00000231113.2	chr6:42943970:+	GNMT^ENSG00000124713.6	chr6:42962212:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2287:50956:1687	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9656	"[""INTRACHROMOSOMAL[chr6:0.01Mb]"",""NEIGHBORS[12394]""]"	chr6:42943970-chr6:42962212	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
AL033384.1--MLIP	1	0	1.0	0.0	ONLY_REF_SPLICE	AL033384.1^ENSG00000236740.6	chr6:53930277:+	MLIP^ENSG00000146147.15	chr6:54121447:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1212:14235:8651	.	YES_LDAS	0.0034	GT	1.9086	AG	1.5219	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr6:0.02Mb]"",""NEIGHBORS[21249]""]"	chr6:53930277-chr6:54121447	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
AL031846.2--SLC2A1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AL031846.2^ENSG00000279833.1	chr22:39135376:+	SLC2A1^ENSG00000117394.24	chr1:42927150:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:9834:3382	.	NO_LDAS	0.0034	GT	1.6402	AG	1.9086	"[""INTERCHROMOSOMAL[chr22--chr1]""]"	chr22:39135376-chr1:42927150	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AKT1--TAC4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AKT1^ENSG00000142208.17	chr14:104777907:-	TAC4^ENSG00000176358.15	chr17:49844118:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1202:4163:8777	.	NO_LDAS	0.0034	GT	1.4256	AG	1.6895	"[""INTERCHROMOSOMAL[chr14--chr17]""]"	chr14:104777907-chr17:49844118	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AHSA1--WTIP	1	0	1.0	0.0	ONLY_REF_SPLICE	AHSA1^ENSG00000100591.8	chr14:77468985:+	WTIP^ENSG00000142279.13	chr19:34500129:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1193:20772:7894	.	NO_LDAS	0.0034	GT	1.8892	AG	1.7968	"[""INTERCHROMOSOMAL[chr14--chr19]""]"	chr14:77468985-chr19:34500129	False			0	Read count too low: 1 < 8	FAIL	1
AHI1--LRGUK	1	0	1.0	0.0	ONLY_REF_SPLICE	AHI1^ENSG00000135541.22	chr6:135405735:-	LRGUK^ENSG00000155530.3	chr7:134137023:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1244:29550:23602	.	NO_LDAS	0.0034	GT	1.9656	AG	1.5301	"[""INTERCHROMOSOMAL[chr6--chr7]""]"	chr6:135405735-chr7:134137023	False			0	Read count too low: 1 < 8	FAIL	1
AHCYL1--RIN2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AHCYL1^ENSG00000168710.18	chr1:109985132:+	RIN2^ENSG00000132669.14	chr20:19809296:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1381:43448:22705	.	NO_LDAS	0.0017	GT	1.5656	AG	1.8256	"[""INTERCHROMOSOMAL[chr1--chr20]""]"	chr1:109985132-chr20:19809296	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AHCYL1--ATP6V1G1P5	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AHCYL1^ENSG00000168710.18	chr1:109985132:+	ATP6V1G1P5^ENSG00000270904.1	chr5:151319509:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1381:43448:22705	.	NO_LDAS	0.0017	GT	1.5656	AG	1.8256	"[""INTERCHROMOSOMAL[chr1--chr5]""]"	chr1:109985132-chr5:151319509	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AGO2--RCOR3	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AGO2^ENSG00000123908.12	chr8:140635485:-	RCOR3^ENSG00000117625.14	chr1:211303256:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2210:27932:2836	.	NO_LDAS	0.0034	GT	1.2867	AG	1.7056	"[""INTERCHROMOSOMAL[chr8--chr1]""]"	chr8:140635485-chr1:211303256	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AGFG1--AMACR	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AGFG1^ENSG00000173744.18	chr2:227552021:+	AMACR^ENSG00000242110.8	chr5:33986655:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1462:13523:18039	.	NO_LDAS	0.0034	GT	1.6402	AG	1.8323	"[""INTERCHROMOSOMAL[chr2--chr5]""]"	chr2:227552021-chr5:33986655	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AGAP10P--BMS1P7	1	0	0.11	0.0	INCL_NON_REF_SPLICE	AGAP10P^ENSG00000230869.1	chr10:45684520:+	BMS1P7^ENSG00000270025.2	chr10:48060020:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1243:10263:25592	.	YES_LDAS	0.0004	GT	1.7465	AG	1.9899	"[""INTRACHROMOSOMAL[chr10:2.35Mb]""]"	chr10:45684520-chr10:48060020	False			0	Read count too low: 1 < 8	FAIL	1
AFF4--FER	1	0	1.0	0.0	ONLY_REF_SPLICE	AFF4^ENSG00000072364.13	chr5:132927121:-	FER^ENSG00000151422.13	chr5:108867767:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1463:4422:21864	.	NO_LDAS	0.0034	GT	1.8256	AG	1.5329	"[""INTRACHROMOSOMAL[chr5:23.68Mb]""]"	chr5:132927121-chr5:108867767	False			0	Read count too low: 1 < 8	FAIL	1
ADRA1B--RNF24	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ADRA1B^ENSG00000170214.5	chr5:159972064:+	RNF24^ENSG00000101236.17	chr20:4015554:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1214:11185:21584	.	NO_LDAS	0.0034	GT	1.231	AG	1.5546	"[""INTERCHROMOSOMAL[chr5--chr20]""]"	chr5:159972064-chr20:4015554	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ADPGK--R3HDM2	1	0	1.0	0.0	ONLY_REF_SPLICE	ADPGK^ENSG00000159322.17	chr15:72760407:-	R3HDM2^ENSG00000179912.20	chr12:57395818:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1232:12706:1518	.	YES_LDAS	0.0034	GT	1.8892	AG	1.7465	"[""INTERCHROMOSOMAL[chr15--chr12]""]"	chr15:72760407-chr12:57395818	False			0	Read count too low: 1 < 8	FAIL	1
ADH1B--ADH7	1	0	1.0	0.0	ONLY_REF_SPLICE	ADH1B^ENSG00000196616.14	chr4:99318785:-	ADH7^ENSG00000196344.11	chr4:99428630:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2149:5741:17394	.	YES_LDAS	0.0034	GT	1.9329	AG	1.9899	"[""DGD_PARALOGS"",""HGNC_GENEFAM"",""INTRACHROMOSOMAL[chr4:0.06Mb]"",""LOCAL_REARRANGEMENT:-:[59501]""]"	chr4:99318785-chr4:99428630	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
ADGRB1--BAG6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ADGRB1^ENSG00000181790.11	chr8:142526627:+	BAG6^ENSG00000204463.13	chr6:31647797:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:47097:10472	.	NO_LDAS	0.0034	GT	1.3383	AG	1.5546	"[""INTERCHROMOSOMAL[chr8--chr6]""]"	chr8:142526627-chr6:31647797	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
ADGRA1--AC138028.2	1	0	0.14	0.0	INCL_NON_REF_SPLICE	ADGRA1^ENSG00000197177.15	chr10:133088840:+	AC138028.2^ENSG00000224888.4	chr16:88738176:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1465:32705:21192	.	NO_LDAS	0.0005	GC	1.2419	AG	1.5546	"[""INTERCHROMOSOMAL[chr10--chr16]""]"	chr10:133088840-chr16:88738176	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ADARB1--FGFR2	1	0	1.0	0.0	ONLY_REF_SPLICE	ADARB1^ENSG00000197381.16	chr21:45074793:+	FGFR2^ENSG00000066468.23	chr10:121564579:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1138:13483:8833	.	YES_LDAS	0.0034	GT	1.6402	AG	1.8892	"[""INTERCHROMOSOMAL[chr21--chr10]""]"	chr21:45074793-chr10:121564579	False			0	Read count too low: 1 < 8	FAIL	1
ADAMTS16--TUBB6	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ADAMTS16^ENSG00000145536.15	chr5:5319134:+	TUBB6^ENSG00000176014.13	chr18:12310962:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2437:40641:28016	.	NO_LDAS	0.0034	GT	1.8256	AG	1.6895	"[""INTERCHROMOSOMAL[chr5--chr18]""]"	chr5:5319134-chr18:12310962	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ADAM8--FAM83G	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ADAM8^ENSG00000151651.16	chr10:133270376:-	FAM83G^ENSG00000188522.15	chr17:18978739:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1285:23709:6311	.	NO_LDAS	0.0034	GT	1.4295	AG	1.9219	"[""INTERCHROMOSOMAL[chr10--chr17]""]"	chr10:133270376-chr17:18978739	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ACVR1B--MARCKSL1	1	0	0.08	0.0	INCL_NON_REF_SPLICE	ACVR1B^ENSG00000135503.13	chr12:51951737:+	MARCKSL1^ENSG00000175130.7	chr1:32336250:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1269:41919:21178	.	NO_LDAS	0.0003	GT	1.1589	AG	1.231	"[""INTERCHROMOSOMAL[chr12--chr1]""]"	chr12:51951737-chr1:32336250	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ACTR3C--AC092681.1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ACTR3C^ENSG00000106526.10	chr7:150284753:-	AC092681.1^ENSG00000224016.2	chr7:149909705:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1450:48998:14158	.	YES_LDAS	0.0034	GT	1.9899	AG	1.9899	"[""TCGA_StarF2019"",""INTRACHROMOSOMAL[chr7:0.33Mb]""]"	chr7:150284753-chr7:149909705	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
ACTG1P12--ACTBP11	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ACTG1P12^ENSG00000226642.1	chr3:12070387:+	ACTBP11^ENSG00000188460.4	chr1:223864680:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1136:35560:5288	.	YES_LDAS	0.0034	GT	1.9656	AG	1.5656	"[""INTERCHROMOSOMAL[chr3--chr1]""]"	chr3:12070387-chr1:223864680	False			0	Read count too low: 1 < 8	FAIL	1
ACSL6--TLE4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ACSL6^ENSG00000164398.15	chr5:131954095:-	TLE4^ENSG00000106829.20	chr9:79627374:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2417:39929:15096	.	NO_LDAS	0.0034	GT	1.9656	AG	1.7819	"[""INTERCHROMOSOMAL[chr5--chr9]""]"	chr5:131954095-chr9:79627374	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ACSL3--PMS1	1	0	1.0	0.0	ONLY_REF_SPLICE	ACSL3^ENSG00000123983.15	chr2:222934687:+	PMS1^ENSG00000064933.18	chr2:189791790:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1121:12383:26124	.	YES_LDAS	0.0034	GT	1.9656	AG	1.9656	"[""INTRACHROMOSOMAL[chr2:32.98Mb]""]"	chr2:222934687-chr2:189791790	False			0	Read count too low: 1 < 8	FAIL	1
ACP7--GALK2	1	0	1.0	0.0	ONLY_REF_SPLICE	ACP7^ENSG00000183760.11	chr19:39085390:+	GALK2^ENSG00000156958.15	chr15:49195085:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1315:47283:13121	.	NO_LDAS	0.0034	GT	1.9086	AG	1.9329	"[""INTERCHROMOSOMAL[chr19--chr15]""]"	chr19:39085390-chr15:49195085	False			0	Read count too low: 1 < 8	FAIL	1
ACOT7--HIVEP1	1	0	1.0	0.0	ONLY_REF_SPLICE	ACOT7^ENSG00000097021.20	chr1:6281102:-	HIVEP1^ENSG00000095951.17	chr6:12015526:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1214:43610:29291	.	YES_LDAS	0.0034	GT	1.7819	AG	1.9086	"[""INTERCHROMOSOMAL[chr1--chr6]""]"	chr1:6281102-chr6:12015526	False			0	Read count too low: 1 < 8	FAIL	1
ACNATP--TAF1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ACNATP^ENSG00000227411.1	chr9:101337866:-	TAF1^ENSG00000147133.16	chrX:71460709:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1291:38141:27021	.	NO_LDAS	0.0034	GT	1.8892	AG	1.7465	"[""INTERCHROMOSOMAL[chr9--chrX]""]"	chr9:101337866-chrX:71460709	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ACCS--EXT2	1	0	1.0	0.0	ONLY_REF_SPLICE	ACCS^ENSG00000110455.14	chr11:44081320:+	EXT2^ENSG00000151348.15	chr11:44107683:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1191:3977:3802	.	YES_LDAS	0.0034	GT	1.7819	AG	1.3996	"[""Babiceanu_Normal"",""INTRACHROMOSOMAL[chr11:0.01Mb]"",""NEIGHBORS[11436]""]"	chr11:44081320-chr11:44107683	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
ACACA--PITPNA	1	0	1.0	0.0	ONLY_REF_SPLICE	ACACA^ENSG00000278540.5	chr17:37358999:-	PITPNA^ENSG00000174238.15	chr17:1548387:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2368:3152:1168	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9086	"[""INTRACHROMOSOMAL[chr17:35.52Mb]""]"	chr17:37358999-chr17:1548387	False			0	Read count too low: 1 < 8	FAIL	1
AC245060.4--SEPTIN7	1	0	0.09	0.0	ONLY_REF_SPLICE	AC245060.4^ENSG00000272779.1	chr22:22310401:+	SEPTIN7^ENSG00000122545.20	chr7:35863552:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1287:32680:1897	.	NO_LDAS	0.0003	GT	1.9656	AG	1.7819	"[""INTERCHROMOSOMAL[chr22--chr7]""]"	chr22:22310401-chr7:35863552	False			0	Read count too low: 1 < 8	FAIL	1
AC244669.2--MAN1A2	1	0	0.25	0.0	ONLY_REF_SPLICE	AC244669.2^ENSG00000274642.1	chr1:120197317:+	MAN1A2^ENSG00000198162.12	chr1:117466334:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1191:47307:24176	.	YES_LDAS	0.0009	GT	1.9329	AG	1.9656	"[""INTRACHROMOSOMAL[chr1:2.67Mb]""]"	chr1:120197317-chr1:117466334	False			0	Read count too low: 1 < 8	FAIL	1
AC233699.1--TBC1D3	1	0	0.04	0.0	ONLY_REF_SPLICE	AC233699.1^ENSG00000261499.2	chr17:36320547:+	TBC1D3^ENSG00000274611.3	chr17:38191030:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1209:47849:3088	.	YES_LDAS	0.0001	GT	1.9329	AG	1.7465	"[""INTRACHROMOSOMAL[chr17:1.86Mb]""]"	chr17:36320547-chr17:38191030	False			0	Read count too low: 1 < 8	FAIL	1
AC211476.4--CCDC146	1	0	0.12	0.0	ONLY_REF_SPLICE	AC211476.4^ENSG00000277125.1	chr7:73072670:+	CCDC146^ENSG00000135205.15	chr7:77167658:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1487:38788:3312	.	YES_LDAS	0.0004	GT	1.8323	AG	1.7465	"[""INTRACHROMOSOMAL[chr7:4.05Mb]""]"	chr7:73072670-chr7:77167658	False			0	Read count too low: 1 < 8	FAIL	1
AC211433.1--OSMR	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC211433.1^ENSG00000232729.8	chr7:74689122:-	OSMR^ENSG00000145623.13	chr5:38845854:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1341:46684:24190	.	NO_LDAS	0.0034	GT	1.9329	AG	1.6895	"[""INTERCHROMOSOMAL[chr7--chr5]""]"	chr7:74689122-chr5:38845854	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC140063.1--VPS53	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC140063.1^ENSG00000255704.1	chr12:131597035:-	VPS53^ENSG00000141252.21	chr17:601896:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1372:6388:8006	.	NO_LDAS	0.0034	GC	1.9329	AG	1.8892	"[""INTERCHROMOSOMAL[chr12--chr17]""]"	chr12:131597035-chr17:601896	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC139795.1--RSF1	1	0	0.5	0.0	ONLY_REF_SPLICE	AC139795.1^ENSG00000246596.7	chr5:177626436:-	RSF1^ENSG00000048649.13	chr11:77740936:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1476:39953:6451	.	YES_LDAS	0.0017	GT	1.6895	AG	1.8892	"[""INTERCHROMOSOMAL[chr5--chr11]""]"	chr5:177626436-chr11:77740936	False			0	Read count too low: 1 < 8	FAIL	1
AC138393.1--AC015802.6	1	0	0.33	0.0	INCL_NON_REF_SPLICE	AC138393.1^ENSG00000229930.1	chr1:224030704:-	AC015802.6^ENSG00000284526.1	chr17:76564707:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1320:21945:13709	.	NO_LDAS	0.0011	GT	1.7819	AG	1.7056	"[""INTERCHROMOSOMAL[chr1--chr17]""]"	chr1:224030704-chr17:76564707	True		aih_curated_blacklist score(3)	0	aih_curated_blacklist score(3)	FAIL	1
AC136475.1--SMG1P4	1	0	1.0	0.0	ONLY_REF_SPLICE	AC136475.1^ENSG00000251661.3	chr11:318746:+	SMG1P4^ENSG00000185710.9	chr16:21892032:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1145:16055:8272	.	NO_LDAS	0.0034	GT	1.5058	AG	1.9086	"[""INTERCHROMOSOMAL[chr11--chr16]""]"	chr11:318746-chr16:21892032	False			0	Read count too low: 1 < 8	FAIL	1
AC134878.2--NEPRO	1	0	0.5	0.0	ONLY_REF_SPLICE	AC134878.2^ENSG00000278212.2	chrY:11212744:-	NEPRO^ENSG00000163608.15	chr3:113014032:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1437:33368:25143	.	YES_LDAS	0.0017	GT	1.8892	AG	1.8062	"[""INTERCHROMOSOMAL[chrY--chr3]""]"	chrY:11212744-chr3:113014032	False			0	Read count too low: 1 < 8	FAIL	1
AC130466.1--DDX39B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC130466.1^ENSG00000283213.1	chr16:22806809:-	DDX39B^ENSG00000198563.14	chr6:31530926:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1245:24582:9702	.	NO_LDAS	0.0017	GT	1.7465	AG	1.7465	"[""INTERCHROMOSOMAL[chr16--chr6]""]"	chr16:22806809-chr6:31530926	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC129492.1--RBBP8	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC129492.1^ENSG00000214999.3	chr17:8081167:+	RBBP8^ENSG00000101773.19	chr18:23016878:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1259:11477:7067	.	NO_LDAS	0.0034	GT	1.3383	AG	1.231	"[""INTERCHROMOSOMAL[chr17--chr18]""]"	chr17:8081167-chr18:23016878	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC129492.1--AC099791.4	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC129492.1^ENSG00000214999.3	chr17:8081167:+	AC099791.4^ENSG00000287224.1	chr1:61589095:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:51271:20029	.	NO_LDAS	0.0034	GT	1.3383	AG	0.971	"[""INTERCHROMOSOMAL[chr17--chr1]""]"	chr17:8081167-chr1:61589095	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC129492.1--AC067942.2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC129492.1^ENSG00000214999.3	chr17:8081167:+	AC067942.2^ENSG00000248113.2	chr4:82580819:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1244:33845:12995	.	NO_LDAS	0.0017	GT	1.3383	AG	1.2867	"[""INTERCHROMOSOMAL[chr17--chr4]""]"	chr17:8081167-chr4:82580819	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC127502.3--AC127502.1	1	0	0.25	0.0	ONLY_REF_SPLICE	AC127502.3^ENSG00000283345.1	chr15:30513698:+	AC127502.1^ENSG00000215302.8	chr15:30474356:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1418:22398:15755	.	YES_LDAS	0.0009	GT	1.5329	AG	1.9656	"[""INTRACHROMOSOMAL[chr15:0.00Mb]"",""NEIGHBORS_OVERLAP:+:+:[246]""]"	chr15:30513698-chr15:30474356	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
AC116914.1--CEP290	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC116914.1^ENSG00000262358.1	chr17:3729469:+	CEP290^ENSG00000198707.17	chr12:88064740:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1179:37470:16834	.	NO_LDAS	0.0034	GT	1.8062	AG	1.9329	"[""INTERCHROMOSOMAL[chr17--chr12]""]"	chr17:3729469-chr12:88064740	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC114808.1--PER1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC114808.1^ENSG00000235403.1	chr2:1068226:-	PER1^ENSG00000179094.16	chr17:8143817:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2108:43934:12981	.	NO_LDAS	0.0034	GT	1.7819	AG	1.5546	"[""INTERCHROMOSOMAL[chr2--chr17]""]"	chr2:1068226-chr17:8143817	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC112698.1--FBL	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC112698.1^ENSG00000248376.2	chr4:183419648:-	FBL^ENSG00000105202.9	chr19:39840515:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1492:16371:4111	.	YES_LDAS	0.0034	GT	1.231	AG	1.9086	"[""INTERCHROMOSOMAL[chr4--chr19]""]"	chr4:183419648-chr19:39840515	False			0	Read count too low: 1 < 8	FAIL	1
AC110753.1--SPDYE2	1	0	0.17	0.0	INCL_NON_REF_SPLICE	AC110753.1^ENSG00000250609.1	chr4:154524747:+	SPDYE2^ENSG00000205238.9	chr7:102553286:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1449:15222:26586	.	NO_LDAS	0.0006	GT	1.9656	AG	1.8323	"[""INTERCHROMOSOMAL[chr4--chr7]""]"	chr4:154524747-chr7:102553286	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC108073.2--FAU	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC108073.2^ENSG00000241011.1	chr4:188106914:+	FAU^ENSG00000149806.11	chr11:65121566:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1213:32106:9337	.	NO_LDAS	0.0034	GT	1.8062	AG	1.8323	"[""INTERCHROMOSOMAL[chr4--chr11]""]"	chr4:188106914-chr11:65121566	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC107909.1--UQCRC2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC107909.1^ENSG00000253532.1	chr8:99120128:+	UQCRC2^ENSG00000140740.11	chr16:21971525:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2194:45681:17464	.	NO_LDAS	0.0017	GT	1.9899	AG	1.9086	"[""INTERCHROMOSOMAL[chr8--chr16]""]"	chr8:99120128-chr16:21971525	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC106785.1--MMP24OS	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC106785.1^ENSG00000260522.1	chr16:35722373:-	MMP24OS^ENSG00000126005.17	chr20:35277869:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1164:45091:8342	.	NO_LDAS	0.0017	GT	1.5546	AG	1.4256	"[""INTERCHROMOSOMAL[chr16--chr20]""]"	chr16:35722373-chr20:35277869	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC106028.3--UQCRC2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC106028.3^ENSG00000260361.1	chr15:92781429:-	UQCRC2^ENSG00000140740.11	chr16:21971525:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2194:45681:17464	.	NO_LDAS	0.0017	GT	1.9899	AG	1.9086	"[""INTERCHROMOSOMAL[chr15--chr16]""]"	chr15:92781429-chr16:21971525	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC102953.2--OSBPL5	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC102953.2^ENSG00000273230.1	chr7:1464753:-	OSBPL5^ENSG00000021762.20	chr11:3122253:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1151:49249:20729	.	NO_LDAS	0.0034	GT	0.6998	AG	1.5656	"[""INTERCHROMOSOMAL[chr7--chr11]""]"	chr7:1464753-chr11:3122253	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC097518.2--AKT3	1	0	1.0	0.0	ONLY_REF_SPLICE	AC097518.2^ENSG00000287544.1	chr4:177220487:-	AKT3^ENSG00000117020.19	chr1:243695716:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1105:10587:6759	.	YES_LDAS	0.0034	GT	1.6402	AG	1.2419	"[""INTERCHROMOSOMAL[chr4--chr1]""]"	chr4:177220487-chr1:243695716	False			0	Read count too low: 1 < 8	FAIL	1
AC097467.3--ABCC9	1	0	0.33	0.0	INCL_NON_REF_SPLICE	AC097467.3^ENSG00000250910.8	chr4:155354233:+	ABCC9^ENSG00000069431.12	chr12:21882870:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1398:28627:17941	.	NO_LDAS	0.0011	GT	1.9219	AG	1.3383	"[""INTERCHROMOSOMAL[chr4--chr12]""]"	chr4:155354233-chr12:21882870	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC096582.2--SEPTIN14	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC096582.2^ENSG00000251378.1	chr7:45818677:+	SEPTIN14^ENSG00000154997.9	chr7:55796092:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1403:20732:1911	.	YES_LDAS	0.0034	GT	1.8892	AG	1.9899	"[""INTRACHROMOSOMAL[chr7:9.97Mb]""]"	chr7:45818677-chr7:55796092	False			0	Read count too low: 1 < 8	FAIL	1
AC093599.1--TP53	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC093599.1^ENSG00000249022.2	chr4:153091068:+	TP53^ENSG00000141510.18	chr17:7673837:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2126:50082:19734	.	NO_LDAS	0.0034	GT	1.8062	AG	1.9086	"[""INTERCHROMOSOMAL[chr4--chr17]""]"	chr4:153091068-chr17:7673837	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC092803.1--COX5A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC092803.1^ENSG00000260805.2	chr1:212558848:-	COX5A^ENSG00000178741.12	chr15:74929232:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2193:49087:4839	.	NO_LDAS	0.0034	GT	1.3996	AG	1.9086	"[""INTERCHROMOSOMAL[chr1--chr15]""]"	chr1:212558848-chr15:74929232	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC092634.6--ZNF680	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC092634.6^ENSG00000278577.1	chr7:63993999:+	ZNF680^ENSG00000173041.12	chr7:64544432:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1450:6129:17675	.	NO_LDAS	0.0034	GT	1.7056	AG	1.9899	"[""INTRACHROMOSOMAL[chr7:0.53Mb]""]"	chr7:63993999-chr7:64544432	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC092634.1--ZNF726	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC092634.1^ENSG00000176232.10	chr7:63980369:-	ZNF726^ENSG00000213967.11	chr19:23919373:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1124:30787:25858	.	NO_LDAS	0.0034	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr7--chr19]""]"	chr7:63980369-chr19:23919373	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC090772.3--SUCLA2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC090772.3^ENSG00000265750.1	chr18:24159706:-	SUCLA2^ENSG00000136143.16	chr13:47943445:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1136:25391:16708	.	YES_LDAS	0.0034	GT	1.7232	AG	1.9219	"[""INTERCHROMOSOMAL[chr18--chr13]""]"	chr18:24159706-chr13:47943445	False			0	Read count too low: 1 < 8	FAIL	1
AC090517.5--ZNF280D	1	0	1.0	0.0	ONLY_REF_SPLICE	AC090517.5^ENSG00000285331.2	chr15:56890014:-	ZNF280D^ENSG00000137871.21	chr15:56682477:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1206:29542:10612	.	NO_LDAS	0.0034	GT	1.7465	AG	1.9219	"[""INTRACHROMOSOMAL[chr15:0.06Mb]"",""NEIGHBORS[61374]""]"	chr15:56890014-chr15:56682477	False			0	Read count too low: 1 < 8	FAIL	1
AC087762.2--ZNF414	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC087762.2^ENSG00000279588.2	chr15:100784514:-	ZNF414^ENSG00000133250.14	chr19:8513116:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1118:24356:16596	.	NO_LDAS	0.0034	GT	1.8892	AG	1.4716	"[""INTERCHROMOSOMAL[chr15--chr19]""]"	chr15:100784514-chr19:8513116	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC087741.3--MZT2A	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC087741.3^ENSG00000279259.1	chr17:80147688:+	MZT2A^ENSG00000173272.16	chr2:131491844:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1351:19008:5876	.	NO_LDAS	0.0017	GT	1.3996	AG	1.1033	"[""INTERCHROMOSOMAL[chr17--chr2]""]"	chr17:80147688-chr2:131491844	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC087521.3--SRC	1	0	1.0	0.0	ONLY_REF_SPLICE	AC087521.3^ENSG00000254409.3	chr11:43971527:+	SRC^ENSG00000197122.12	chr20:37384150:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1415:25254:15713	.	NO_LDAS	0.0034	GT	1.8892	AG	1.9086	"[""INTERCHROMOSOMAL[chr11--chr20]""]"	chr11:43971527-chr20:37384150	False			0	Read count too low: 1 < 8	FAIL	1
AC087482.1--HMGN2P30	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC087482.1^ENSG00000259347.7	chr15:67000813:-	HMGN2P30^ENSG00000213721.3	chr7:42113446:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1214:30577:14144	.	YES_LDAS	0.0017	GT	1.8892	AG	1.8892	"[""INTERCHROMOSOMAL[chr15--chr7]""]"	chr15:67000813-chr7:42113446	False			0	Read count too low: 1 < 8	FAIL	1
AC083899.1--REV1	1	0	0.5	0.0	ONLY_REF_SPLICE	AC083899.1^ENSG00000204745.4	chr2:87193577:+	REV1^ENSG00000135945.10	chr2:99464985:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:21589:18585	.	YES_LDAS	0.0017	GT	1.8892	AG	1.9086	"[""INTRACHROMOSOMAL[chr2:12.20Mb]""]"	chr2:87193577-chr2:99464985	False			0	Read count too low: 1 < 8	FAIL	1
AC080112.1--POLR3D	1	0	0.11	0.0	INCL_NON_REF_SPLICE	AC080112.1^ENSG00000266208.1	chr17:40363839:+	POLR3D^ENSG00000168495.13	chr8:22250528:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2257:7237:28646	.	NO_LDAS	0.0004	GT	1.2419	AG	1.5546	"[""INTERCHROMOSOMAL[chr17--chr8]""]"	chr17:40363839-chr8:22250528	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC080112.1--GAL3ST1	1	0	0.11	0.0	INCL_NON_REF_SPLICE	AC080112.1^ENSG00000266208.1	chr17:40363839:+	GAL3ST1^ENSG00000128242.13	chr22:30574486:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2257:7237:28646	.	NO_LDAS	0.0004	GT	1.2419	AG	1.2419	"[""INTERCHROMOSOMAL[chr17--chr22]""]"	chr17:40363839-chr22:30574486	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC079781.5--GATAD2B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC079781.5^ENSG00000284707.2	chr7:97936947:-	GATAD2B^ENSG00000143614.10	chr1:153828348:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1355:10045:7278	.	YES_LDAS	0.0034	GT	1.9219	AG	1.7819	"[""INTERCHROMOSOMAL[chr7--chr1]""]"	chr7:97936947-chr1:153828348	False			0	Read count too low: 1 < 8	FAIL	1
AC079160.1--GON4L	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC079160.1^ENSG00000250546.6	chr4:84008806:-	GON4L^ENSG00000116580.19	chr1:155827028:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:16428:28058	.	NO_LDAS	0.0034	GT	1.7465	AG	1.8295	"[""INTERCHROMOSOMAL[chr4--chr1]""]"	chr4:84008806-chr1:155827028	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC079142.1--ZMYM2	1	0	1.0	0.0	ONLY_REF_SPLICE	AC079142.1^ENSG00000285679.2	chrX:7929413:+	ZMYM2^ENSG00000121741.17	chr13:20051433:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1149:43578:24891	.	YES_LDAS	0.0034	GT	1.8062	AG	1.9219	"[""INTERCHROMOSOMAL[chrX--chr13]""]"	chrX:7929413-chr13:20051433	False			0	Read count too low: 1 < 8	FAIL	1
AC078852.2--CTBP1-AS	1	0	0.33	0.0	INCL_NON_REF_SPLICE	AC078852.2^ENSG00000254094.1	chr4:1356716:+	CTBP1-AS^ENSG00000280927.1	chr4:1212717:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1496:15263:8272	.	NO_LDAS	0.0011	GT	1.7232	AG	1.371	"[""INTRACHROMOSOMAL[chr4:0.14Mb]""]"	chr4:1356716-chr4:1212717	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC073861.1--CREBL2	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC073861.1^ENSG00000242299.1	chr3:101576681:-	CREBL2^ENSG00000111269.3	chr12:12612140:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2349:12650:21962	.	YES_LDAS	0.0017	GT	1.6402	AG	1.7968	"[""INTERCHROMOSOMAL[chr3--chr12]""]"	chr3:101576681-chr12:12612140	False			0	Read count too low: 1 < 8	FAIL	1
AC072052.1--AC005840.1	1	0	0.33	0.0	INCL_NON_REF_SPLICE	AC072052.1^ENSG00000231359.3	chr7:6491068:-	AC005840.1^ENSG00000213942.3	chr12:6409977:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2410:8152:16582	.	NO_LDAS	0.0011	GT	1.5628	AG	1.8062	"[""INTERCHROMOSOMAL[chr7--chr12]""]"	chr7:6491068-chr12:6409977	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC069544.1--DYNC1LI2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC069544.1^ENSG00000284024.4	chr10:14845704:+	DYNC1LI2^ENSG00000135720.13	chr16:66742668:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1408:9503:24527	.	NO_LDAS	0.0034	GT	1.9656	AG	1.8892	"[""INTERCHROMOSOMAL[chr10--chr16]""]"	chr10:14845704-chr16:66742668	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC069120.1--FAM13B	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC069120.1^ENSG00000253361.3	chr8:38543270:-	FAM13B^ENSG00000031003.10	chr5:138018514:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1192:31661:16638	.	NO_LDAS	0.0034	GT	1.9899	AG	1.8892	"[""INTERCHROMOSOMAL[chr8--chr5]""]"	chr8:38543270-chr5:138018514	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC068587.4--RABGAP1	1	0	0.5	0.0	ONLY_REF_SPLICE	AC068587.4^ENSG00000283674.3	chr8:12601158:-	RABGAP1^ENSG00000011454.18	chr9:123065348:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2353:31378:29571	.	YES_LDAS	0.0017	GT	1.3996	AG	1.8892	"[""INTERCHROMOSOMAL[chr8--chr9]""]"	chr8:12601158-chr9:123065348	False			0	Read count too low: 1 < 8	FAIL	1
AC044810.2--S100A10	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC044810.2^ENSG00000254951.7	chr11:7754405:-	S100A10^ENSG00000197747.9	chr1:151986251:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1105:51085:9562	.	NO_LDAS	0.0034	GT	1.7968	AG	1.8892	"[""INTERCHROMOSOMAL[chr11--chr1]""]"	chr11:7754405-chr1:151986251	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC044810.2--OVCH2	1	0	1.0	0.0	ONLY_REF_SPLICE	AC044810.2^ENSG00000254951.7	chr11:7905603:-	OVCH2^ENSG00000183378.12	chr11:7704674:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2326:30957:27105	.	YES_LDAS	0.0034	GT	1.8892	AG	1.8256	"[""GTEx_recurrent_StarF2019"",""INTRACHROMOSOMAL[chr11:0.05Mb]"",""NEIGHBORS[47972]""]"	chr11:7905603-chr11:7704674	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
AC027682.4--WWP2	1	0	1.0	0.0	ONLY_REF_SPLICE	AC027682.4^ENSG00000261386.2	chr16:67563295:-	WWP2^ENSG00000198373.13	chr16:69840126:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1306:44783:21234	.	YES_LDAS	0.0034	GT	1.5058	AG	1.9086	"[""INTRACHROMOSOMAL[chr16:2.20Mb]""]"	chr16:67563295-chr16:69840126	False			0	Read count too low: 1 < 8	FAIL	1
AC027682.4--LONRF1	1	0	1.0	0.0	ONLY_REF_SPLICE	AC027682.4^ENSG00000261386.2	chr16:67563295:-	LONRF1^ENSG00000154359.13	chr8:12743282:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1474:16735:1154	.	NO_LDAS	0.0034	GT	1.5058	AG	1.9656	"[""INTERCHROMOSOMAL[chr16--chr8]""]"	chr16:67563295-chr8:12743282	False			0	Read count too low: 1 < 8	FAIL	1
AC022154.1--NUP85	1	0	1.0	0.0	ONLY_REF_SPLICE	AC022154.1^ENSG00000268093.1	chr19:48620799:-	NUP85^ENSG00000125450.11	chr17:75231340:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2242:46150:13569	.	NO_LDAS	0.0034	GT	1.9329	AG	1.8892	"[""INTERCHROMOSOMAL[chr19--chr17]""]"	chr19:48620799-chr17:75231340	False			0	Read count too low: 1 < 8	FAIL	1
AC021188.1--ZNF710	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC021188.1^ENSG00000230747.1	chr2:96321413:-	ZNF710^ENSG00000140548.10	chr15:90001436:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2406:7998:4209	.	NO_LDAS	0.0034	GT	1.2419	AG	0.971	"[""INTERCHROMOSOMAL[chr2--chr15]""]"	chr2:96321413-chr15:90001436	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC019080.1--NBPF9	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC019080.1^ENSG00000213963.6	chr2:177283991:-	NBPF9^ENSG00000269713.7	chr1:149071676:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2408:52056:11467	.	NO_LDAS	0.0034	GT	1.9329	AG	1.7232	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:177283991-chr1:149071676	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC018697.1--MARCKSL1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC018697.1^ENSG00000266573.6	chr18:24985428:+	MARCKSL1^ENSG00000175130.7	chr1:32334917:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1450:14729:4013	.	NO_LDAS	0.0034	GT	1.7819	AG	1.7819	"[""INTERCHROMOSOMAL[chr18--chr1]""]"	chr18:24985428-chr1:32334917	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC016629.1--RPL23AP82	1	0	0.5	0.0	ONLY_REF_SPLICE	AC016629.1^ENSG00000269032.1	chr19:58586356:+	RPL23AP82^ENSG00000184319.16	chr22:50788750:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1147:34986:23770	.	YES_LDAS	0.0017	GT	1.7819	AG	1.6895	"[""INTERCHROMOSOMAL[chr19--chr22]""]"	chr19:58586356-chr22:50788750	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
AC016597.1--LGALS3	1	0	0.5	0.0	ONLY_REF_SPLICE	AC016597.1^ENSG00000261329.6	chr16:27685266:-	LGALS3^ENSG00000131981.16	chr14:55137370:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:40981:2766	.	NO_LDAS	0.0017	GT	1.9329	AG	1.6402	"[""INTERCHROMOSOMAL[chr16--chr14]""]"	chr16:27685266-chr14:55137370	False			0	Read count too low: 1 < 8	FAIL	1
AC016026.1--LTBR	1	0	1.0	0.0	ONLY_REF_SPLICE	AC016026.1^ENSG00000093100.13	chr22:17808844:-	LTBR^ENSG00000111321.11	chr12:6375512:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1106:34323:14550	.	YES_LDAS	0.0034	GT	1.7465	AG	1.6895	"[""INTERCHROMOSOMAL[chr22--chr12]""]"	chr22:17808844-chr12:6375512	False			0	Read count too low: 1 < 8	FAIL	1
AC015712.1--CLASP2	1	0	0.5	0.0	ONLY_REF_SPLICE	AC015712.1^ENSG00000232386.9	chr15:100855348:+	CLASP2^ENSG00000163539.17	chr3:33696933:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2456:8419:1631	.	YES_LDAS	0.0017	GT	1.9329	AG	1.8256	"[""INTERCHROMOSOMAL[chr15--chr3]""]"	chr15:100855348-chr3:33696933	False			0	Read count too low: 1 < 8	FAIL	1
AC013268.1--EIF3E	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC013268.1^ENSG00000186148.13	chr2:109937583:+	EIF3E^ENSG00000104408.11	chr8:108201923:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1459:10190:21038	.	NO_LDAS	0.0017	GT	1.7819	AG	1.9656	"[""INTERCHROMOSOMAL[chr2--chr8]""]"	chr2:109937583-chr8:108201923	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC012443.1--RPL22	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC012443.1^ENSG00000270776.1	chr2:152539305:-	RPL22^ENSG00000116251.11	chr1:6193051:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1481:8904:20659	.	NO_LDAS	0.0017	GT	1.9656	AG	1.9086	"[""INTERCHROMOSOMAL[chr2--chr1]""]"	chr2:152539305-chr1:6193051	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC012414.6--FOXN3	1	0	0.17	0.0	INCL_NON_REF_SPLICE	AC012414.6^ENSG00000274499.1	chr15:20803791:-	FOXN3^ENSG00000053254.16	chr14:89350808:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1294:1356:4223	.	NO_LDAS	0.0006	GT	1.8295	AG	1.5058	"[""INTERCHROMOSOMAL[chr15--chr14]""]"	chr15:20803791-chr14:89350808	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC012236.1--PLD2	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC012236.1^ENSG00000259772.6	chr15:31223650:-	PLD2^ENSG00000129219.14	chr17:4808138:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1168:13912:5876	.	NO_LDAS	0.0034	GC	1.3383	AG	1.1589	"[""INTERCHROMOSOMAL[chr15--chr17]""]"	chr15:31223650-chr17:4808138	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC012213.1--CLASP2	1	0	0.5	0.0	ONLY_REF_SPLICE	AC012213.1^ENSG00000253477.5	chr8:103487561:-	CLASP2^ENSG00000163539.17	chr3:33696933:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2456:8419:1631	.	YES_LDAS	0.0017	GT	1.9329	AG	1.8256	"[""INTERCHROMOSOMAL[chr8--chr3]""]"	chr8:103487561-chr3:33696933	False			0	Read count too low: 1 < 8	FAIL	1
AC011450.1--SLC6A16	1	0	1.0	0.0	ONLY_REF_SPLICE	AC011450.1^ENSG00000197813.6	chr19:49340231:-	SLC6A16^ENSG00000063127.16	chr19:49294553:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2164:33449:7628	.	YES_LDAS	0.0034	GT	1.2867	AG	1.8892	"[""INTRACHROMOSOMAL[chr19:0.01Mb]"",""NEIGHBORS[6310]""]"	chr19:49340231-chr19:49294553	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
AC011416.2--ATP5F1B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC011416.2^ENSG00000250956.1	chr5:127179782:-	ATP5F1B^ENSG00000110955.9	chr12:56645199:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2207:7901:19230	.	NO_LDAS	0.0017	GT	1.8295	AG	1.7056	"[""INTERCHROMOSOMAL[chr5--chr12]""]"	chr5:127179782-chr12:56645199	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC010343.1--HECW2-AS1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC010343.1^ENSG00000240376.1	chr5:33162224:+	HECW2-AS1^ENSG00000229056.2	chr2:196260479:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2260:9948:22607	.	NO_LDAS	0.0034	GC	1.5656	AG	1.9219	"[""INTERCHROMOSOMAL[chr5--chr2]""]"	chr5:33162224-chr2:196260479	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC009879.4--EHMT1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC009879.4^ENSG00000287127.1	chr8:66432324:-	EHMT1^ENSG00000181090.21	chr9:137717070:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2152:46563:16273	.	NO_LDAS	0.0034	GC	1.6729	AG	1.8323	"[""INTERCHROMOSOMAL[chr8--chr9]""]"	chr8:66432324-chr9:137717070	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC009120.2--TSSK1B	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC009120.2^ENSG00000259972.3	chr16:74305287:-	TSSK1B^ENSG00000212122.4	chr5:113435002:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2206:39694:8300	.	NO_LDAS	0.0017	GT	1.7232	AG	1.9329	"[""INTERCHROMOSOMAL[chr16--chr5]""]"	chr16:74305287-chr5:113435002	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC008708.2--TOP1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC008708.2^ENSG00000254187.1	chr5:167653608:-	TOP1^ENSG00000198900.7	chr20:41076205:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1290:43141:21500	.	NO_LDAS	0.0034	GT	1.4256	AG	1.3383	"[""INTERCHROMOSOMAL[chr5--chr20]""]"	chr5:167653608-chr20:41076205	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC008280.2--PTGR1	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC008280.2^ENSG00000272156.1	chr2:54084970:+	PTGR1^ENSG00000106853.20	chr9:111574830:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2111:12091:17829	.	NO_LDAS	0.0034	GT	1.5656	AG	1.7465	"[""INTERCHROMOSOMAL[chr2--chr9]""]"	chr2:54084970-chr9:111574830	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC008013.1--KDM2A	1	0	1.0	0.0	ONLY_REF_SPLICE	AC008013.1^ENSG00000226472.8	chr12:30988464:-	KDM2A^ENSG00000173120.15	chr11:67180079:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2163:42736:4853	.	NO_LDAS	0.0034	GC	1.9329	AG	1.9656	"[""INTERCHROMOSOMAL[chr12--chr11]""]"	chr12:30988464-chr11:67180079	True	pair|recurrent breakpoints	aih_curated_blacklist score(3)	0	Blacklisted; aih_curated_blacklist score(3)	FAIL	1
AC007952.1--FAS	1	0	0.25	0.0	INCL_NON_REF_SPLICE	AC007952.1^ENSG00000197665.7	chr17:19158291:-	FAS^ENSG00000026103.22	chr10:88991213:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1104:6566:7670	.	NO_LDAS	0.0009	GT	1.8892	AG	1.2419	"[""INTERCHROMOSOMAL[chr17--chr10]""]"	chr17:19158291-chr10:88991213	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC006581.2--PTK7	1	0	0.33	0.0	INCL_NON_REF_SPLICE	AC006581.2^ENSG00000282022.1	chr12:8858218:-	PTK7^ENSG00000112655.16	chr6:43132042:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1147:26880:17689	.	NO_LDAS	0.0011	GT	1.6895	AG	1.9086	"[""INTERCHROMOSOMAL[chr12--chr6]""]"	chr12:8858218-chr6:43132042	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC006013.1--MYO6	1	0	1.0	0.0	ONLY_REF_SPLICE	AC006013.1^ENSG00000236531.2	chr7:68091325:+	MYO6^ENSG00000196586.16	chr6:75891228:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1385:11663:9576	.	YES_LDAS	0.0034	GT	1.9329	AG	1.7819	"[""INTERCHROMOSOMAL[chr7--chr6]""]"	chr7:68091325-chr6:75891228	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
AC005871.1--TUBGCP4	1	0	0.5	0.0	INCL_NON_REF_SPLICE	AC005871.1^ENSG00000235198.1	chr10:117572345:-	TUBGCP4^ENSG00000137822.13	chr15:43404398:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:38368:7684	.	NO_LDAS	0.0017	GT	1.9656	AG	1.7056	"[""INTERCHROMOSOMAL[chr10--chr15]""]"	chr10:117572345-chr15:43404398	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
AC004980.3--AC004951.2	1	0	0.08	0.0	INCL_NON_REF_SPLICE	AC004980.3^ENSG00000230305.2	chr7:76527852:+	AC004951.2^ENSG00000239556.4	chr7:43988247:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1115:9082:2107	.	YES_LDAS	0.0003	GT	1.9086	AG	1.7465	"[""INTRACHROMOSOMAL[chr7:32.53Mb]""]"	chr7:76527852-chr7:43988247	False			0	Read count too low: 1 < 8	FAIL	1
AC004801.2--RPL37	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AC004801.2^ENSG00000240399.1	chr12:48055121:-	RPL37^ENSG00000145592.14	chr5:40834265:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1443:48448:27161	.	NO_LDAS	0.0034	GT	1.6895	AG	1.9656	"[""INTERCHROMOSOMAL[chr12--chr5]""]"	chr12:48055121-chr5:40834265	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
AC002116.2--WDR62	1	0	1.0	0.0	ONLY_REF_SPLICE	AC002116.2^ENSG00000267698.1	chr19:36019384:+	WDR62^ENSG00000075702.19	chr19:36058780:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2151:25375:13681	.	YES_LDAS	0.0034	GT	1.585	AG	1.9656	"[""INTRACHROMOSOMAL[chr19:0.01Mb]"",""NEIGHBORS[8677]""]"	chr19:36019384-chr19:36058780	True	pair|recurrent breakpoints		0	Blacklisted	FAIL	1
ABCD1--ABCD2	1	0	1.0	0.0	ONLY_REF_SPLICE	ABCD1^ENSG00000101986.12	chrX:153743346:+	ABCD2^ENSG00000173208.4	chr12:39554131:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2279:46919:20477	.	NO_LDAS	0.0034	GT	1.4566	AG	1.5329	"[""HGNC_GENEFAM"",""INTERCHROMOSOMAL[chrX--chr12]""]"	chrX:153743346-chr12:39554131	False			0	Excluded annotation pattern: HGNC_GENEFAM	FAIL	1
ABCC5--LINC01940	1	0	1.0	0.0	INCL_NON_REF_SPLICE	ABCC5^ENSG00000114770.17	chr3:183967695:-	LINC01940^ENSG00000227744.4	chr2:238924137:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1265:10465:13723	.	NO_LDAS	0.0034	GT	1.9899	AG	1.9086	"[""INTERCHROMOSOMAL[chr3--chr2]""]"	chr3:183967695-chr2:238924137	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1
ABCC1--CDK5RAP1	1	0	1.0	0.0	ONLY_REF_SPLICE	ABCC1^ENSG00000103222.20	chr16:16079478:+	CDK5RAP1^ENSG00000101391.21	chr20:33360491:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1392:37397:26236	.	YES_LDAS	0.0034	GT	1.9899	AG	1.9329	"[""INTERCHROMOSOMAL[chr16--chr20]""]"	chr16:16079478-chr20:33360491	False			0	Read count too low: 1 < 8	FAIL	1
ABCA11P--RNF213	1	0	0.12	0.0	ONLY_REF_SPLICE	ABCA11P^ENSG00000251595.7	chr4:472575:-	RNF213^ENSG00000173821.19	chr17:80325030:+	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1251:29226:17464	.	YES_LDAS	0.0004	GT	1.8892	AG	1.9329	"[""INTERCHROMOSOMAL[chr4--chr17]""]"	chr4:472575-chr17:80325030	False			0	Read count too low: 1 < 8	FAIL	1
AARS2--SCNN1A	1	0	1.0	0.0	INCL_NON_REF_SPLICE	AARS2^ENSG00000124608.5	chr6:44306935:-	SCNN1A^ENSG00000111319.13	chr12:6374708:-	&SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1451:23911:28660	.	NO_LDAS	0.0034	GT	1.9086	AG	1.5546	"[""INTERCHROMOSOMAL[chr6--chr12]""]"	chr6:44306935-chr12:6374708	False			0	Excluded SpliceType: INCL_NON_REF_SPLICE	FAIL	1