Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/e750b7e0760a212602dfae8d940a92/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/369a4c1784fa5c8c1eb6124589dba9/BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/e750b7e0760a212602dfae8d940a92/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory