Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/93969930b81351650b58e684b11b3c/MCF7_FFPE_RNA_0001_B23LG7FLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/b42d1fda1e348dd081db52eeb13612/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/b42d1fda1e348dd081db52eeb13612/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory