Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/0e081d74ba58fd5e6d048393ede4c5/ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/8c3dae952024c7773d2e473ccb206e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/8c3dae952024c7773d2e473ccb206e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/dbaa0e40d1b8da9e45862ca86cce30/ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory