Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/9b7e7b2ef1237e3e9faba4ba632e7a/A549_FFPE_01_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/f789d11d3dfd58975ba1c1dd754edc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/d8ad8b373325b308073769af7c41cf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/d8ad8b373325b308073769af7c41cf/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/1b6839c2f11fb05d655d02c6eec5b1/A549_FFPE_01_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: A549_FFPE_01_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (28) splicing reads. 10 splicing junctions. 1 known splicing junctions. 9 novel splicing junctions.
sampling 10% (56) splicing reads. 24 splicing junctions. 1 known splicing junctions. 23 novel splicing junctions.
sampling 15% (85) splicing reads. 31 splicing junctions. 1 known splicing junctions. 30 novel splicing junctions.
sampling 20% (113) splicing reads. 40 splicing junctions. 4 known splicing junctions. 36 novel splicing junctions.
sampling 25% (141) splicing reads. 50 splicing junctions. 5 known splicing junctions. 45 novel splicing junctions.
sampling 30% (170) splicing reads. 56 splicing junctions. 6 known splicing junctions. 50 novel splicing junctions.
sampling 35% (198) splicing reads. 61 splicing junctions. 10 known splicing junctions. 51 novel splicing junctions.
sampling 40% (226) splicing reads. 70 splicing junctions. 11 known splicing junctions. 59 novel splicing junctions.
sampling 45% (255) splicing reads. 75 splicing junctions. 12 known splicing junctions. 63 novel splicing junctions.
sampling 50% (283) splicing reads. 79 splicing junctions. 13 known splicing junctions. 66 novel splicing junctions.
sampling 55% (311) splicing reads. 81 splicing junctions. 13 known splicing junctions. 68 novel splicing junctions.
sampling 60% (340) splicing reads. 83 splicing junctions. 14 known splicing junctions. 69 novel splicing junctions.
sampling 65% (368) splicing reads. 86 splicing junctions. 15 known splicing junctions. 71 novel splicing junctions.
sampling 70% (396) splicing reads. 89 splicing junctions. 15 known splicing junctions. 74 novel splicing junctions.
sampling 75% (425) splicing reads. 90 splicing junctions. 15 known splicing junctions. 75 novel splicing junctions.
sampling 80% (453) splicing reads. 90 splicing junctions. 15 known splicing junctions. 75 novel splicing junctions.
sampling 85% (481) splicing reads. 91 splicing junctions. 15 known splicing junctions. 76 novel splicing junctions.
sampling 90% (510) splicing reads. 93 splicing junctions. 15 known splicing junctions. 78 novel splicing junctions.
sampling 95% (538) splicing reads. 94 splicing junctions. 15 known splicing junctions. 79 novel splicing junctions.
sampling 100% (567) splicing reads. 94 splicing junctions. 15 known splicing junctions. 79 novel splicing junctions.
null device 
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