Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/f789d11d3dfd58975ba1c1dd754edc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/7be4d88d94a034ebba4a39a18657fc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/0e875cb50de5e926b2780a973f1280/786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/7be4d88d94a034ebba4a39a18657fc/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/0a564da64801430f766c7668398f5b/786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 317767072
[W::hts_idx_load3] The index file is older than the data file: 786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	317767072
Known Splicing Events:	315384177
Partial Novel Splicing Events:	1635102
Novel Splicing Events:	667750
Filtered Splicing Events:	80043

Total splicing  Junctions:	611346
Known Splicing Junctions:	279813
Partial Novel Splicing Junctions:	183957
Novel Splicing Junctions:	147576

===================================================================
Create BED file ...
Create Interact file ...