Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/a548bc142a4bc4da97a7dcaf4dc9c3/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/4ba2e762c173497381e0813e780170/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/4ba2e762c173497381e0813e780170/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/a548bc142a4bc4da97a7dcaf4dc9c3/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory