.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/eb64c4b02b45a7607a4c0718e4f554/.command.log
Size: 741 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/3d90db9c171ef7a67783558b7b58ce/HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/eb64c4b02b45a7607a4c0718e4f554/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/eb64c4b02b45a7607a4c0718e4f554/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1: vaf_p90=1.000000 -> CLEAN

Output saved to: HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1.predictions.csv
Summary: 0/1 samples flagged as contaminated