Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/958274e6a8327d7186ec764bb82df4/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/0e875cb50de5e926b2780a973f1280/786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/958274e6a8327d7186ec764bb82df4/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/0a564da64801430f766c7668398f5b/786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat
==> STAGING COMPLETE (6 inputs)
/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
May 28, 2026 9:26:53 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Thu May 28 21:26:53 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_2_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu May 28 21:26:53 GMT 2026] Executing as ?@nf-49958274e6a8327d7186ec764bb82df4-dea27-wp4wc on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
WARNING: BAM index file /tmp/nxf.XXXXfUAfEa/786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXfUAfEa/786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
INFO 2026-05-28 21:26:55 CollectRnaSeqMetrics Loaded 58279 genes.
INFO 2026-05-28 21:27:05 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 10s. Last read position: chr1:1,049,682
INFO 2026-05-28 21:27:21 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 16s. Last read position: chr1:1,523,556
INFO 2026-05-28 21:27:31 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 9s. Last read position: chr1:3,647,467
INFO 2026-05-28 21:27:43 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 11s. Last read position: chr1:7,969,363
INFO 2026-05-28 21:27:51 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 8s. Last read position: chr1:9,731,380
INFO 2026-05-28 21:28:07 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 15s. Last read position: chr1:11,243,134
INFO 2026-05-28 21:28:26 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 19s. Last read position: chr1:15,427,226
INFO 2026-05-28 21:28:33 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 7s. Last read position: chr1:16,391,374
INFO 2026-05-28 21:28:41 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 7s. Last read position: chr1:18,908,619
INFO 2026-05-28 21:28:59 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 17s. Last read position: chr1:19,485,449
INFO 2026-05-28 21:29:14 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 14s. Last read position: chr1:22,091,460
INFO 2026-05-28 21:29:21 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 6s. Last read position: chr1:24,652,521
INFO 2026-05-28 21:29:30 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 9s. Last read position: chr1:26,774,602
INFO 2026-05-28 21:29:37 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 7s. Last read position: chr1:28,553,727
INFO 2026-05-28 21:29:50 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 13s. Last read position: chr1:31,756,617
INFO 2026-05-28 21:30:05 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 15s. Last read position: chr1:32,826,438
INFO 2026-05-28 21:30:14 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 8s. Last read position: chr1:35,738,487
INFO 2026-05-28 21:30:21 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 6s. Last read position: chr1:37,857,571
INFO 2026-05-28 21:31:43 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 82s. Last read position: chr1:39,428,060
INFO 2026-05-28 21:32:46 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 62s. Last read position: chr1:40,092,056
INFO 2026-05-28 21:32:54 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 8s. Last read position: chr1:42,752,600
INFO 2026-05-28 21:33:08 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 14s. Last read position: chr1:43,667,931
INFO 2026-05-28 21:33:21 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 12s. Last read position: chr1:45,511,282
INFO 2026-05-28 21:33:31 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 9s. Last read position: chr1:46,665,337
INFO 2026-05-28 21:33:45 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 13s. Last read position: chr1:53,260,505
INFO 2026-05-28 21:33:57 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 11s. Last read position: chr1:61,694,730
INFO 2026-05-28 21:34:17 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 19s. Last read position: chr1:70,433,884
INFO 2026-05-28 21:34:28 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 11s. Last read position: chr1:85,582,429
INFO 2026-05-28 21:34:34 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 5s. Last read position: chr1:93,567,387
INFO 2026-05-28 21:34:40 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 5s. Last read position: chr1:98,661,711
INFO 2026-05-28 21:35:10 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 30s. Last read position: chr1:103,031,156
INFO 2026-05-28 21:35:23 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 12s. Last read position: chr1:109,355,437
INFO 2026-05-28 21:35:35 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 12s. Last read position: chr1:112,654,658
INFO 2026-05-28 21:35:43 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 8s. Last read position: chr1:114,464,334
INFO 2026-05-28 21:35:54 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 10s. Last read position: chr1:116,390,353
INFO 2026-05-28 21:36:05 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 10s. Last read position: chr1:117,075,262
INFO 2026-05-28 21:36:23 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 18s. Last read position: chr1:119,915,299
INFO 2026-05-28 21:36:29 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 5s. Last read position: chr1:119,919,379
INFO 2026-05-28 21:36:36 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 6s. Last read position: chr1:119,929,129
INFO 2026-05-28 21:36:44 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 8s. Last read position: chr1:119,963,628
INFO 2026-05-28 21:36:58 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 13s. Last read position: chr1:120,156,995
INFO 2026-05-28 21:37:01 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 3s. Last read position: chr1:120,701,072
INFO 2026-05-28 21:37:05 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 3s. Last read position: chr1:145,233,400
INFO 2026-05-28 21:37:11 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 5s. Last read position: chr1:146,985,733
INFO 2026-05-28 21:37:20 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 8s. Last read position: chr1:148,873,480
INFO 2026-05-28 21:37:31 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 11s. Last read position: chr1:149,813,338
INFO 2026-05-28 21:37:33 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr1:149,945,025
INFO 2026-05-28 21:37:40 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 7s. Last read position: chr1:151,239,134
INFO 2026-05-28 21:37:48 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 7s. Last read position: chr1:152,310,273
INFO 2026-05-28 21:37:56 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 7s. Last read position: chr1:154,170,424
INFO 2026-05-28 21:38:24 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 28s. Last read position: chr1:154,932,351
INFO 2026-05-28 21:38:44 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 20s. Last read position: chr1:155,198,437
INFO 2026-05-28 21:39:23 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 38s. Last read position: chr1:155,614,082
INFO 2026-05-28 21:39:37 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 14s. Last read position: chr1:156,051,740
INFO 2026-05-28 21:40:07 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 29s. Last read position: chr1:156,139,746
INFO 2026-05-28 21:40:13 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 6s. Last read position: chr1:156,672,843
INFO 2026-05-28 21:40:18 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 5s. Last read position: chr1:160,222,717
INFO 2026-05-28 21:40:39 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 20s. Last read position: chr1:164,799,773
INFO 2026-05-28 21:40:48 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 9s. Last read position: chr1:171,535,578
INFO 2026-05-28 21:41:01 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 13s. Last read position: chr1:178,458,308
INFO 2026-05-28 21:41:08 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 6s. Last read position: chr1:183,103,408
INFO 2026-05-28 21:41:16 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 8s. Last read position: chr1:186,335,478
INFO 2026-05-28 21:41:30 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 14s. Last read position: chr1:200,605,283
INFO 2026-05-28 21:41:40 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 10s. Last read position: chr1:203,022,952
INFO 2026-05-28 21:41:50 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 9s. Last read position: chr1:205,795,441
INFO 2026-05-28 21:41:56 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 6s. Last read position: chr1:212,692,145
INFO 2026-05-28 21:42:01 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 4s. Last read position: chr1:219,969,066
INFO 2026-05-28 21:42:09 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 7s. Last read position: chr1:224,411,486
INFO 2026-05-28 21:42:17 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 7s. Last read position: chr1:226,071,732
INFO 2026-05-28 21:42:34 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 17s. Last read position: chr1:229,326,951
INFO 2026-05-28 21:42:41 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 7s. Last read position: chr1:235,182,270
INFO 2026-05-28 21:43:00 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 18s. Last read position: chr1:243,668,804
INFO 2026-05-28 21:43:18 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 17s. Last read position: chr1:247,329,283
INFO 2026-05-28 21:43:29 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 11s. Last read position: chr2:9,588,259
INFO 2026-05-28 21:43:43 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 13s. Last read position: chr2:15,623,455
INFO 2026-05-28 21:43:54 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 10s. Last read position: chr2:24,711,060
INFO 2026-05-28 21:44:04 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 10s. Last read position: chr2:27,071,365
INFO 2026-05-28 21:44:16 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 11s. Last read position: chr2:28,404,348
INFO 2026-05-28 21:44:21 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 5s. Last read position: chr2:28,781,814
INFO 2026-05-28 21:44:31 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 9s. Last read position: chr2:32,392,075
INFO 2026-05-28 21:44:38 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 7s. Last read position: chr2:32,916,264
INFO 2026-05-28 21:44:45 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 6s. Last read position: chr2:32,916,264
INFO 2026-05-28 21:44:47 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-05-28 21:44:49 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,947,778
INFO 2026-05-28 21:44:56 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 6s. Last read position: chr2:37,646,360
INFO 2026-05-28 21:45:08 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 12s. Last read position: chr2:43,974,720
INFO 2026-05-28 21:45:18 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 10s. Last read position: chr2:53,901,471
INFO 2026-05-28 21:45:35 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 16s. Last read position: chr2:55,316,010
INFO 2026-05-28 21:46:07 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 32s. Last read position: chr2:61,481,256
INFO 2026-05-28 21:46:30 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 22s. Last read position: chr2:68,526,152
INFO 2026-05-28 21:46:49 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 19s. Last read position: chr2:71,349,215
INFO 2026-05-28 21:46:59 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 9s. Last read position: chr2:74,366,244
INFO 2026-05-28 21:47:08 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 9s. Last read position: chr2:85,327,243
INFO 2026-05-28 21:47:15 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 7s. Last read position: chr2:88,627,144
INFO 2026-05-28 21:47:24 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 9s. Last read position: chr2:96,828,577
INFO 2026-05-28 21:47:33 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 8s. Last read position: chr2:101,266,839
INFO 2026-05-28 21:47:48 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 15s. Last read position: chr2:108,675,877
INFO 2026-05-28 21:47:53 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 4s. Last read position: chr2:109,794,304
INFO 2026-05-28 21:47:59 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 6s. Last read position: chr2:111,794,820
INFO 2026-05-28 21:48:05 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 5s. Last read position: chr2:113,939,958
INFO 2026-05-28 21:48:15 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 10s. Last read position: chr2:130,140,318
INFO 2026-05-28 21:48:24 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 9s. Last read position: chr2:135,126,641
INFO 2026-05-28 21:48:38 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 13s. Last read position: chr2:149,007,981
INFO 2026-05-28 21:48:49 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 11s. Last read position: chr2:159,228,886
INFO 2026-05-28 21:49:01 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 11s. Last read position: chr2:170,752,053
INFO 2026-05-28 21:49:12 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 11s. Last read position: chr2:175,118,260
INFO 2026-05-28 21:49:35 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:22:40s. Time for last 1,000,000: 23s. Last read position: chr2:181,529,556
INFO 2026-05-28 21:49:47 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 11s. Last read position: chr2:189,078,525
INFO 2026-05-28 21:50:01 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 14s. Last read position: chr2:197,401,496
INFO 2026-05-28 21:50:25 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 23s. Last read position: chr2:202,210,735
INFO 2026-05-28 21:50:38 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:23:42s. Time for last 1,000,000: 13s. Last read position: chr2:205,763,909
INFO 2026-05-28 21:50:48 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 10s. Last read position: chr2:213,284,466
INFO 2026-05-28 21:51:11 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:24:15s. Time for last 1,000,000: 22s. Last read position: chr2:216,660,640
INFO 2026-05-28 21:51:19 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:24:23s. Time for last 1,000,000: 8s. Last read position: chr2:219,218,458
INFO 2026-05-28 21:51:29 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:24:34s. Time for last 1,000,000: 10s. Last read position: chr2:219,632,949
INFO 2026-05-28 21:51:45 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:24:49s. Time for last 1,000,000: 15s. Last read position: chr2:229,858,951
INFO 2026-05-28 21:52:09 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:25:13s. Time for last 1,000,000: 24s. Last read position: chr2:233,441,933
INFO 2026-05-28 21:52:17 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:25:21s. Time for last 1,000,000: 8s. Last read position: chr2:238,427,034
INFO 2026-05-28 21:52:30 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:25:35s. Time for last 1,000,000: 13s. Last read position: chr2:241,238,706
INFO 2026-05-28 21:52:49 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:25:53s. Time for last 1,000,000: 18s. Last read position: chr3:9,429,567
INFO 2026-05-28 21:53:04 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:26:08s. Time for last 1,000,000: 15s. Last read position: chr3:12,591,756
INFO 2026-05-28 21:53:12 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:26:17s. Time for last 1,000,000: 8s. Last read position: chr3:15,738,589
INFO 2026-05-28 21:53:24 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:26:28s. Time for last 1,000,000: 11s. Last read position: chr3:31,579,923
INFO 2026-05-28 21:53:37 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:26:41s. Time for last 1,000,000: 13s. Last read position: chr3:37,148,893
INFO 2026-05-28 21:53:48 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:26:52s. Time for last 1,000,000: 11s. Last read position: chr3:41,224,996
INFO 2026-05-28 21:54:13 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:27:17s. Time for last 1,000,000: 24s. Last read position: chr3:45,931,270
INFO 2026-05-28 21:54:24 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:27:28s. Time for last 1,000,000: 10s. Last read position: chr3:47,847,256
INFO 2026-05-28 21:54:37 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:27:41s. Time for last 1,000,000: 13s. Last read position: chr3:48,601,352
INFO 2026-05-28 21:54:49 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:27:53s. Time for last 1,000,000: 11s. Last read position: chr3:49,098,059
INFO 2026-05-28 21:55:01 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:28:05s. Time for last 1,000,000: 12s. Last read position: chr3:49,368,444
INFO 2026-05-28 21:55:14 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:28:18s. Time for last 1,000,000: 13s. Last read position: chr3:50,214,188
INFO 2026-05-28 21:55:20 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:28:25s. Time for last 1,000,000: 6s. Last read position: chr3:51,419,968
INFO 2026-05-28 21:55:29 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:28:33s. Time for last 1,000,000: 8s. Last read position: chr3:52,524,606
INFO 2026-05-28 21:55:40 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:28:44s. Time for last 1,000,000: 10s. Last read position: chr3:53,234,972
INFO 2026-05-28 21:55:51 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:28:56s. Time for last 1,000,000: 11s. Last read position: chr3:58,107,122
INFO 2026-05-28 21:56:10 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:29:14s. Time for last 1,000,000: 18s. Last read position: chr3:67,375,839
INFO 2026-05-28 21:56:19 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:29:23s. Time for last 1,000,000: 9s. Last read position: chr3:89,449,283
INFO 2026-05-28 21:56:32 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:29:36s. Time for last 1,000,000: 12s. Last read position: chr3:100,375,018
INFO 2026-05-28 21:56:50 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:29:54s. Time for last 1,000,000: 17s. Last read position: chr3:111,198,277
INFO 2026-05-28 21:56:58 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:30:02s. Time for last 1,000,000: 8s. Last read position: chr3:121,718,447
INFO 2026-05-28 21:57:08 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:30:13s. Time for last 1,000,000: 10s. Last read position: chr3:124,873,473
INFO 2026-05-28 21:57:14 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:30:19s. Time for last 1,000,000: 5s. Last read position: chr3:128,764,958
INFO 2026-05-28 21:57:27 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:30:31s. Time for last 1,000,000: 12s. Last read position: chr3:132,477,986
INFO 2026-05-28 21:57:38 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:30:43s. Time for last 1,000,000: 11s. Last read position: chr3:141,444,466
INFO 2026-05-28 21:57:48 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:30:52s. Time for last 1,000,000: 9s. Last read position: chr3:149,741,602
INFO 2026-05-28 21:57:56 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:31:00s. Time for last 1,000,000: 8s. Last read position: chr3:160,417,775
INFO 2026-05-28 21:58:08 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:31:12s. Time for last 1,000,000: 11s. Last read position: chr3:179,333,858
INFO 2026-05-28 21:58:29 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:31:33s. Time for last 1,000,000: 21s. Last read position: chr3:184,164,356
INFO 2026-05-28 21:58:52 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:31:56s. Time for last 1,000,000: 22s. Last read position: chr3:184,328,643
INFO 2026-05-28 21:59:08 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:32:12s. Time for last 1,000,000: 16s. Last read position: chr3:188,406,125
INFO 2026-05-28 21:59:22 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:32:26s. Time for last 1,000,000: 14s. Last read position: chr3:195,725,068
INFO 2026-05-28 22:00:00 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:33:04s. Time for last 1,000,000: 37s. Last read position: chr3:197,297,786
INFO 2026-05-28 22:00:13 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:33:17s. Time for last 1,000,000: 12s. Last read position: chr4:1,212,992
INFO 2026-05-28 22:00:33 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:33:37s. Time for last 1,000,000: 20s. Last read position: chr4:1,799,440
INFO 2026-05-28 22:00:57 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:34:01s. Time for last 1,000,000: 24s. Last read position: chr4:2,931,825
INFO 2026-05-28 22:01:22 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:34:26s. Time for last 1,000,000: 25s. Last read position: chr4:7,768,962
INFO 2026-05-28 22:01:37 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:34:41s. Time for last 1,000,000: 14s. Last read position: chr4:15,612,367
INFO 2026-05-28 22:01:50 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:34:55s. Time for last 1,000,000: 13s. Last read position: chr4:29,173,985
INFO 2026-05-28 22:02:05 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:35:09s. Time for last 1,000,000: 14s. Last read position: chr4:41,261,752
INFO 2026-05-28 22:02:30 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:35:35s. Time for last 1,000,000: 25s. Last read position: chr4:52,023,794
INFO 2026-05-28 22:02:41 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:35:45s. Time for last 1,000,000: 10s. Last read position: chr4:56,382,558
INFO 2026-05-28 22:02:50 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:35:55s. Time for last 1,000,000: 9s. Last read position: chr4:57,032,510
INFO 2026-05-28 22:02:57 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:36:01s. Time for last 1,000,000: 6s. Last read position: chr4:67,646,751
INFO 2026-05-28 22:03:21 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:36:26s. Time for last 1,000,000: 24s. Last read position: chr4:75,793,797
INFO 2026-05-28 22:03:31 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:36:35s. Time for last 1,000,000: 9s. Last read position: chr4:82,428,147
INFO 2026-05-28 22:03:47 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:36:51s. Time for last 1,000,000: 16s. Last read position: chr4:87,982,610
INFO 2026-05-28 22:03:57 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:37:01s. Time for last 1,000,000: 9s. Last read position: chr4:103,163,136
INFO 2026-05-28 22:04:33 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:37:37s. Time for last 1,000,000: 35s. Last read position: chr4:118,352,621
INFO 2026-05-28 22:04:47 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:37:51s. Time for last 1,000,000: 13s. Last read position: chr4:124,678,733
INFO 2026-05-28 22:04:53 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:37:58s. Time for last 1,000,000: 6s. Last read position: chr4:140,622,602
INFO 2026-05-28 22:05:10 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:38:14s. Time for last 1,000,000: 16s. Last read position: chr4:151,104,220
INFO 2026-05-28 22:05:48 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:38:52s. Time for last 1,000,000: 38s. Last read position: chr4:158,253,443
INFO 2026-05-28 22:06:00 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:39:05s. Time for last 1,000,000: 12s. Last read position: chr4:168,925,023
INFO 2026-05-28 22:06:09 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:39:13s. Time for last 1,000,000: 8s. Last read position: chr4:183,249,977
INFO 2026-05-28 22:06:22 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:39:27s. Time for last 1,000,000: 13s. Last read position: chr4:186,628,237
INFO 2026-05-28 22:06:32 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:39:36s. Time for last 1,000,000: 9s. Last read position: chr5:3,599,967
INFO 2026-05-28 22:06:42 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:39:47s. Time for last 1,000,000: 10s. Last read position: chr5:14,280,333
INFO 2026-05-28 22:07:10 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:40:14s. Time for last 1,000,000: 27s. Last read position: chr5:14,479,951
INFO 2026-05-28 22:07:35 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:40:40s. Time for last 1,000,000: 25s. Last read position: chr5:32,126,386
INFO 2026-05-28 22:07:52 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:40:56s. Time for last 1,000,000: 16s. Last read position: chr5:38,481,907
INFO 2026-05-28 22:08:03 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:41:07s. Time for last 1,000,000: 10s. Last read position: chr5:55,160,217
INFO 2026-05-28 22:08:15 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:41:19s. Time for last 1,000,000: 12s. Last read position: chr5:65,597,049
INFO 2026-05-28 22:08:34 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:41:38s. Time for last 1,000,000: 18s. Last read position: chr5:71,458,599
INFO 2026-05-28 22:08:43 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:41:47s. Time for last 1,000,000: 9s. Last read position: chr5:72,199,063
INFO 2026-05-28 22:08:57 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:42:01s. Time for last 1,000,000: 13s. Last read position: chr5:74,705,274
INFO 2026-05-28 22:09:14 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:42:18s. Time for last 1,000,000: 16s. Last read position: chr5:80,651,193
INFO 2026-05-28 22:09:34 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:42:38s. Time for last 1,000,000: 20s. Last read position: chr5:83,580,307
INFO 2026-05-28 22:10:02 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:43:07s. Time for last 1,000,000: 28s. Last read position: chr5:93,683,675
INFO 2026-05-28 22:11:57 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:45:01s. Time for last 1,000,000: 114s. Last read position: chr5:96,767,968
INFO 2026-05-28 22:12:26 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:45:30s. Time for last 1,000,000: 29s. Last read position: chr5:112,887,052
INFO 2026-05-28 22:12:50 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:45:54s. Time for last 1,000,000: 23s. Last read position: chr5:124,649,629
INFO 2026-05-28 22:13:16 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:46:21s. Time for last 1,000,000: 26s. Last read position: chr5:132,764,388
INFO 2026-05-28 22:13:28 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:46:33s. Time for last 1,000,000: 12s. Last read position: chr5:134,887,804
INFO 2026-05-28 22:13:39 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:46:44s. Time for last 1,000,000: 11s. Last read position: chr5:138,467,565
INFO 2026-05-28 22:14:06 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:47:10s. Time for last 1,000,000: 26s. Last read position: chr5:140,042,725
INFO 2026-05-28 22:14:20 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:47:24s. Time for last 1,000,000: 13s. Last read position: chr5:141,216,019
INFO 2026-05-28 22:14:29 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:47:33s. Time for last 1,000,000: 9s. Last read position: chr5:141,510,965
INFO 2026-05-28 22:14:54 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:47:58s. Time for last 1,000,000: 25s. Last read position: chr5:146,271,605
INFO 2026-05-28 22:15:07 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:48:12s. Time for last 1,000,000: 13s. Last read position: chr5:150,396,529
INFO 2026-05-28 22:15:14 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:48:19s. Time for last 1,000,000: 7s. Last read position: chr5:151,673,177
INFO 2026-05-28 22:15:34 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:48:39s. Time for last 1,000,000: 19s. Last read position: chr5:157,493,077
INFO 2026-05-28 22:15:48 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:48:52s. Time for last 1,000,000: 13s. Last read position: chr5:168,098,091
INFO 2026-05-28 22:16:04 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:49:08s. Time for last 1,000,000: 15s. Last read position: chr5:171,387,986
INFO 2026-05-28 22:16:32 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:49:36s. Time for last 1,000,000: 27s. Last read position: chr5:172,670,074
INFO 2026-05-28 22:16:40 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:49:44s. Time for last 1,000,000: 8s. Last read position: chr5:177,306,149
INFO 2026-05-28 22:16:53 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:49:57s. Time for last 1,000,000: 12s. Last read position: chr5:179,616,925
INFO 2026-05-28 22:17:22 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:50:27s. Time for last 1,000,000: 29s. Last read position: chr5:179,823,870
INFO 2026-05-28 22:17:32 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:50:36s. Time for last 1,000,000: 9s. Last read position: chr5:181,236,980
INFO 2026-05-28 22:17:40 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:50:45s. Time for last 1,000,000: 8s. Last read position: chr6:4,776,667
INFO 2026-05-28 22:17:48 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:50:53s. Time for last 1,000,000: 7s. Last read position: chr6:11,193,638
INFO 2026-05-28 22:17:57 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:51:01s. Time for last 1,000,000: 8s. Last read position: chr6:18,225,692
INFO 2026-05-28 22:18:02 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:51:07s. Time for last 1,000,000: 5s. Last read position: chr6:26,123,491
INFO 2026-05-28 22:18:04 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:51:09s. Time for last 1,000,000: 2s. Last read position: chr6:27,133,361
INFO 2026-05-28 22:18:09 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:51:13s. Time for last 1,000,000: 4s. Last read position: chr6:29,944,312
INFO 2026-05-28 22:18:15 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:51:19s. Time for last 1,000,000: 5s. Last read position: chr6:30,724,861
INFO 2026-05-28 22:18:31 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:51:35s. Time for last 1,000,000: 16s. Last read position: chr6:31,625,554
INFO 2026-05-28 22:18:48 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:51:52s. Time for last 1,000,000: 17s. Last read position: chr6:31,687,612
INFO 2026-05-28 22:18:58 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:52:03s. Time for last 1,000,000: 10s. Last read position: chr6:32,127,503
INFO 2026-05-28 22:19:08 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:52:12s. Time for last 1,000,000: 9s. Last read position: chr6:33,406,472
INFO 2026-05-28 22:19:18 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:52:22s. Time for last 1,000,000: 9s. Last read position: chr6:34,858,861
INFO 2026-05-28 22:19:23 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:52:27s. Time for last 1,000,000: 5s. Last read position: chr6:36,970,086
INFO 2026-05-28 22:19:30 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:52:34s. Time for last 1,000,000: 6s. Last read position: chr6:42,938,135
INFO 2026-05-28 22:19:42 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:52:46s. Time for last 1,000,000: 12s. Last read position: chr6:43,568,710
INFO 2026-05-28 22:19:51 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:52:55s. Time for last 1,000,000: 8s. Last read position: chr6:47,285,949
INFO 2026-05-28 22:20:02 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:53:06s. Time for last 1,000,000: 11s. Last read position: chr6:56,463,069
INFO 2026-05-28 22:21:23 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:54:27s. Time for last 1,000,000: 80s. Last read position: chr6:56,617,160
INFO 2026-05-28 22:22:18 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:55:23s. Time for last 1,000,000: 55s. Last read position: chr6:73,518,206
INFO 2026-05-28 22:22:38 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:55:42s. Time for last 1,000,000: 19s. Last read position: chr6:79,513,382
INFO 2026-05-28 22:22:49 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:55:53s. Time for last 1,000,000: 11s. Last read position: chr6:88,142,107
INFO 2026-05-28 22:22:57 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:56:01s. Time for last 1,000,000: 7s. Last read position: chr6:98,834,914
INFO 2026-05-28 22:23:04 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:56:08s. Time for last 1,000,000: 7s. Last read position: chr6:107,893,843
INFO 2026-05-28 22:23:18 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:56:22s. Time for last 1,000,000: 14s. Last read position: chr6:112,191,741
INFO 2026-05-28 22:23:25 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:56:29s. Time for last 1,000,000: 6s. Last read position: chr6:121,170,448
INFO 2026-05-28 22:23:39 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:56:44s. Time for last 1,000,000: 14s. Last read position: chr6:129,578,527
INFO 2026-05-28 22:23:50 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:56:55s. Time for last 1,000,000: 10s. Last read position: chr6:134,029,533
INFO 2026-05-28 22:24:03 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:57:08s. Time for last 1,000,000: 12s. Last read position: chr6:143,844,596
INFO 2026-05-28 22:24:12 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:57:16s. Time for last 1,000,000: 8s. Last read position: chr6:149,701,904
INFO 2026-05-28 22:24:22 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:57:26s. Time for last 1,000,000: 9s. Last read position: chr6:152,215,017
INFO 2026-05-28 22:25:00 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:58:05s. Time for last 1,000,000: 38s. Last read position: chr6:158,325,845
INFO 2026-05-28 22:25:05 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:58:09s. Time for last 1,000,000: 4s. Last read position: chr6:158,785,534
INFO 2026-05-28 22:25:18 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:58:23s. Time for last 1,000,000: 13s. Last read position: chr6:163,415,179
INFO 2026-05-28 22:25:30 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:58:34s. Time for last 1,000,000: 11s. Last read position: chr6:163,570,740
INFO 2026-05-28 22:25:44 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:58:48s. Time for last 1,000,000: 13s. Last read position: chr7:843,379
INFO 2026-05-28 22:25:53 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:58:57s. Time for last 1,000,000: 9s. Last read position: chr7:2,542,192
INFO 2026-05-28 22:26:02 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:59:06s. Time for last 1,000,000: 8s. Last read position: chr7:5,313,343
INFO 2026-05-28 22:26:10 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:59:14s. Time for last 1,000,000: 7s. Last read position: chr7:5,528,040
INFO 2026-05-28 22:26:19 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:59:24s. Time for last 1,000,000: 9s. Last read position: chr7:5,529,265
INFO 2026-05-28 22:26:29 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:59:33s. Time for last 1,000,000: 9s. Last read position: chr7:6,256,626
INFO 2026-05-28 22:26:37 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:59:41s. Time for last 1,000,000: 8s. Last read position: chr7:18,585,356
INFO 2026-05-28 22:26:48 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:59:53s. Time for last 1,000,000: 11s. Last read position: chr7:26,184,825
INFO 2026-05-28 22:27:16 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 01:00:20s. Time for last 1,000,000: 27s. Last read position: chr7:31,790,134
INFO 2026-05-28 22:27:26 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 01:00:30s. Time for last 1,000,000: 9s. Last read position: chr7:38,772,524
INFO 2026-05-28 22:27:34 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 01:00:38s. Time for last 1,000,000: 8s. Last read position: chr7:44,059,539
INFO 2026-05-28 22:27:45 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 01:00:49s. Time for last 1,000,000: 10s. Last read position: chr7:45,072,774
INFO 2026-05-28 22:27:58 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 01:01:02s. Time for last 1,000,000: 13s. Last read position: chr7:55,146,719
INFO 2026-05-28 22:28:07 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 01:01:11s. Time for last 1,000,000: 8s. Last read position: chr7:65,974,341
INFO 2026-05-28 22:28:19 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 01:01:23s. Time for last 1,000,000: 11s. Last read position: chr7:72,942,136
INFO 2026-05-28 22:28:22 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 01:01:26s. Time for last 1,000,000: 3s. Last read position: chr7:73,510,747
INFO 2026-05-28 22:28:31 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 01:01:36s. Time for last 1,000,000: 9s. Last read position: chr7:74,832,661
INFO 2026-05-28 22:28:36 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 01:01:40s. Time for last 1,000,000: 4s. Last read position: chr7:75,790,137
INFO 2026-05-28 22:28:42 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 01:01:46s. Time for last 1,000,000: 5s. Last read position: chr7:77,040,012
INFO 2026-05-28 22:28:52 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 01:01:56s. Time for last 1,000,000: 10s. Last read position: chr7:91,045,930
INFO 2026-05-28 22:30:11 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 01:03:15s. Time for last 1,000,000: 78s. Last read position: chr7:92,610,288
INFO 2026-05-28 22:30:36 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 01:03:40s. Time for last 1,000,000: 25s. Last read position: chr7:94,663,857
INFO 2026-05-28 22:30:43 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 01:03:47s. Time for last 1,000,000: 6s. Last read position: chr7:98,204,065
INFO 2026-05-28 22:31:05 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 01:04:09s. Time for last 1,000,000: 22s. Last read position: chr7:99,547,755
INFO 2026-05-28 22:31:15 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 01:04:19s. Time for last 1,000,000: 10s. Last read position: chr7:100,433,330
INFO 2026-05-28 22:31:23 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 01:04:28s. Time for last 1,000,000: 8s. Last read position: chr7:101,088,487
INFO 2026-05-28 22:31:33 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 01:04:37s. Time for last 1,000,000: 9s. Last read position: chr7:102,553,314
INFO 2026-05-28 22:31:42 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 01:04:47s. Time for last 1,000,000: 9s. Last read position: chr7:105,146,596
INFO 2026-05-28 22:32:04 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 01:05:09s. Time for last 1,000,000: 21s. Last read position: chr7:113,117,386
INFO 2026-05-28 22:32:23 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 01:05:28s. Time for last 1,000,000: 18s. Last read position: chr7:123,692,379
INFO 2026-05-28 22:32:32 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 01:05:36s. Time for last 1,000,000: 8s. Last read position: chr7:128,086,938
INFO 2026-05-28 22:32:40 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:05:44s. Time for last 1,000,000: 8s. Last read position: chr7:130,175,539
INFO 2026-05-28 22:32:52 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:05:57s. Time for last 1,000,000: 12s. Last read position: chr7:134,965,328
INFO 2026-05-28 22:32:59 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:06:03s. Time for last 1,000,000: 6s. Last read position: chr7:138,869,723
INFO 2026-05-28 22:33:05 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:06:10s. Time for last 1,000,000: 6s. Last read position: chr7:140,459,054
INFO 2026-05-28 22:33:18 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:06:22s. Time for last 1,000,000: 12s. Last read position: chr7:147,300,564
INFO 2026-05-28 22:33:27 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:06:32s. Time for last 1,000,000: 9s. Last read position: chr7:151,054,282
INFO 2026-05-28 22:33:38 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:06:42s. Time for last 1,000,000: 10s. Last read position: chr7:151,595,382
INFO 2026-05-28 22:34:03 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:07:07s. Time for last 1,000,000: 25s. Last read position: chr7:157,367,481
INFO 2026-05-28 22:34:16 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:07:20s. Time for last 1,000,000: 13s. Last read position: chr8:11,845,117
INFO 2026-05-28 22:34:51 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:07:55s. Time for last 1,000,000: 34s. Last read position: chr8:22,107,840
INFO 2026-05-28 22:35:09 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:08:14s. Time for last 1,000,000: 18s. Last read position: chr8:23,432,907
INFO 2026-05-28 22:35:22 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:08:26s. Time for last 1,000,000: 12s. Last read position: chr8:30,689,296
INFO 2026-05-28 22:35:48 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:08:52s. Time for last 1,000,000: 26s. Last read position: chr8:38,522,814
INFO 2026-05-28 22:36:16 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:09:20s. Time for last 1,000,000: 27s. Last read position: chr8:42,290,233
INFO 2026-05-28 22:36:42 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:09:47s. Time for last 1,000,000: 26s. Last read position: chr8:53,946,689
INFO 2026-05-28 22:37:08 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:10:12s. Time for last 1,000,000: 25s. Last read position: chr8:69,130,275
INFO 2026-05-28 22:37:24 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:10:28s. Time for last 1,000,000: 16s. Last read position: chr8:88,041,617
INFO 2026-05-28 22:37:38 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:10:42s. Time for last 1,000,000: 13s. Last read position: chr8:100,713,093
INFO 2026-05-28 22:37:55 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:10:59s. Time for last 1,000,000: 16s. Last read position: chr8:118,110,976
INFO 2026-05-28 22:38:10 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:11:15s. Time for last 1,000,000: 15s. Last read position: chr8:127,736,241
INFO 2026-05-28 22:38:42 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:11:46s. Time for last 1,000,000: 31s. Last read position: chr8:140,837,724
INFO 2026-05-28 22:39:12 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:12:16s. Time for last 1,000,000: 29s. Last read position: chr8:143,919,234
INFO 2026-05-28 22:39:42 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:12:46s. Time for last 1,000,000: 30s. Last read position: chr8:144,082,779
INFO 2026-05-28 22:39:55 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:13:00s. Time for last 1,000,000: 13s. Last read position: chr8:144,517,482
INFO 2026-05-28 22:40:24 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:13:28s. Time for last 1,000,000: 28s. Last read position: chr9:3,879,507
INFO 2026-05-28 22:40:48 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:13:53s. Time for last 1,000,000: 24s. Last read position: chr9:9,442,156
INFO 2026-05-28 22:41:32 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:14:37s. Time for last 1,000,000: 44s. Last read position: chr9:15,192,591
INFO 2026-05-28 22:41:46 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:14:51s. Time for last 1,000,000: 13s. Last read position: chr9:32,091,023
INFO 2026-05-28 22:41:57 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:15:02s. Time for last 1,000,000: 11s. Last read position: chr9:34,614,060
INFO 2026-05-28 22:42:19 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:15:23s. Time for last 1,000,000: 21s. Last read position: chr9:35,710,851
INFO 2026-05-28 22:42:29 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:15:33s. Time for last 1,000,000: 10s. Last read position: chr9:37,784,043
INFO 2026-05-28 22:42:34 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:15:38s. Time for last 1,000,000: 5s. Last read position: chr9:68,247,612
INFO 2026-05-28 22:42:52 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:15:56s. Time for last 1,000,000: 17s. Last read position: chr9:77,370,543
INFO 2026-05-28 22:43:10 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:16:14s. Time for last 1,000,000: 18s. Last read position: chr9:92,265,034
INFO 2026-05-28 22:43:21 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:16:26s. Time for last 1,000,000: 11s. Last read position: chr9:97,475,448
INFO 2026-05-28 22:43:35 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:16:39s. Time for last 1,000,000: 13s. Last read position: chr9:106,929,294
INFO 2026-05-28 22:43:59 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:17:04s. Time for last 1,000,000: 24s. Last read position: chr9:113,583,758
INFO 2026-05-28 22:44:31 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:17:36s. Time for last 1,000,000: 32s. Last read position: chr9:115,086,897
INFO 2026-05-28 22:44:47 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:17:51s. Time for last 1,000,000: 15s. Last read position: chr9:122,877,493
INFO 2026-05-28 22:45:01 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:18:05s. Time for last 1,000,000: 14s. Last read position: chr9:127,447,877
INFO 2026-05-28 22:45:24 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:18:29s. Time for last 1,000,000: 23s. Last read position: chr9:128,261,521
INFO 2026-05-28 22:45:47 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:18:51s. Time for last 1,000,000: 22s. Last read position: chr9:128,959,123
INFO 2026-05-28 22:45:57 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:19:02s. Time for last 1,000,000: 10s. Last read position: chr9:130,862,942
INFO 2026-05-28 22:46:09 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:19:13s. Time for last 1,000,000: 11s. Last read position: chr9:131,597,181
INFO 2026-05-28 22:46:21 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:19:25s. Time for last 1,000,000: 11s. Last read position: chr9:134,033,570
INFO 2026-05-28 22:46:33 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:19:37s. Time for last 1,000,000: 12s. Last read position: chr9:136,011,993
INFO 2026-05-28 22:46:52 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:19:56s. Time for last 1,000,000: 18s. Last read position: chr9:136,837,358
INFO 2026-05-28 22:47:04 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:20:08s. Time for last 1,000,000: 12s. Last read position: chr9:137,242,508
INFO 2026-05-28 22:47:21 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:20:26s. Time for last 1,000,000: 17s. Last read position: chr10:3,783,703
INFO 2026-05-28 22:47:31 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:20:36s. Time for last 1,000,000: 10s. Last read position: chr10:17,229,847
INFO 2026-05-28 22:47:47 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:20:51s. Time for last 1,000,000: 15s. Last read position: chr10:31,807,628
INFO 2026-05-28 22:48:06 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:21:10s. Time for last 1,000,000: 19s. Last read position: chr10:43,644,720
INFO 2026-05-28 22:48:13 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:21:18s. Time for last 1,000,000: 7s. Last read position: chr10:52,315,011
INFO 2026-05-28 22:48:21 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:21:25s. Time for last 1,000,000: 7s. Last read position: chr10:68,572,968
INFO 2026-05-28 22:48:31 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:21:35s. Time for last 1,000,000: 10s. Last read position: chr10:72,613,580
INFO 2026-05-28 22:48:44 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:21:48s. Time for last 1,000,000: 13s. Last read position: chr10:75,399,626
INFO 2026-05-28 22:48:59 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:22:03s. Time for last 1,000,000: 14s. Last read position: chr10:86,899,834
INFO 2026-05-28 22:49:09 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:22:13s. Time for last 1,000,000: 10s. Last read position: chr10:92,633,641
INFO 2026-05-28 22:49:24 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:22:28s. Time for last 1,000,000: 15s. Last read position: chr10:96,983,394
INFO 2026-05-28 22:49:31 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:22:35s. Time for last 1,000,000: 7s. Last read position: chr10:100,498,097
INFO 2026-05-28 22:49:57 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:23:01s. Time for last 1,000,000: 25s. Last read position: chr10:102,488,167
INFO 2026-05-28 22:50:08 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:23:12s. Time for last 1,000,000: 10s. Last read position: chr10:113,040,029
INFO 2026-05-28 22:50:17 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:23:22s. Time for last 1,000,000: 9s. Last read position: chr10:119,820,871
INFO 2026-05-28 22:50:26 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:23:31s. Time for last 1,000,000: 8s. Last read position: chr10:128,103,682
INFO 2026-05-28 22:50:32 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:23:36s. Time for last 1,000,000: 5s. Last read position: chr11:237,083
INFO 2026-05-28 22:50:42 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:23:46s. Time for last 1,000,000: 9s. Last read position: chr11:884,154
INFO 2026-05-28 22:50:54 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:23:58s. Time for last 1,000,000: 11s. Last read position: chr11:3,706,479
INFO 2026-05-28 22:51:10 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:24:14s. Time for last 1,000,000: 16s. Last read position: chr11:9,178,183
INFO 2026-05-28 22:51:26 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:24:30s. Time for last 1,000,000: 16s. Last read position: chr11:13,419,731
INFO 2026-05-28 22:51:38 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:24:43s. Time for last 1,000,000: 12s. Last read position: chr11:28,023,745
INFO 2026-05-28 22:51:48 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:24:52s. Time for last 1,000,000: 9s. Last read position: chr11:35,139,218
INFO 2026-05-28 22:52:02 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:25:07s. Time for last 1,000,000: 14s. Last read position: chr11:45,902,706
INFO 2026-05-28 22:52:20 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:25:25s. Time for last 1,000,000: 17s. Last read position: chr11:47,413,584
INFO 2026-05-28 22:52:28 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:25:33s. Time for last 1,000,000: 8s. Last read position: chr11:57,334,597
INFO 2026-05-28 22:52:45 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:25:49s. Time for last 1,000,000: 16s. Last read position: chr11:61,300,056
INFO 2026-05-28 22:53:02 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:26:06s. Time for last 1,000,000: 17s. Last read position: chr11:62,356,986
INFO 2026-05-28 22:53:09 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:26:13s. Time for last 1,000,000: 6s. Last read position: chr11:62,634,910
INFO 2026-05-28 22:53:22 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:26:26s. Time for last 1,000,000: 12s. Last read position: chr11:64,195,771
INFO 2026-05-28 22:53:31 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:26:35s. Time for last 1,000,000: 9s. Last read position: chr11:64,926,849
INFO 2026-05-28 22:53:37 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:26:41s. Time for last 1,000,000: 6s. Last read position: chr11:65,505,263
INFO 2026-05-28 22:53:51 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:26:55s. Time for last 1,000,000: 13s. Last read position: chr11:65,855,411
INFO 2026-05-28 22:53:59 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:27:04s. Time for last 1,000,000: 8s. Last read position: chr11:66,639,909
INFO 2026-05-28 22:54:11 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:27:15s. Time for last 1,000,000: 11s. Last read position: chr11:68,030,715
INFO 2026-05-28 22:54:21 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:27:25s. Time for last 1,000,000: 9s. Last read position: chr11:70,435,477
INFO 2026-05-28 22:54:38 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:27:43s. Time for last 1,000,000: 17s. Last read position: chr11:74,093,973
INFO 2026-05-28 22:54:52 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:27:56s. Time for last 1,000,000: 13s. Last read position: chr11:85,976,665
INFO 2026-05-28 22:55:04 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:28:08s. Time for last 1,000,000: 11s. Last read position: chr11:96,279,042
INFO 2026-05-28 22:55:17 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:28:21s. Time for last 1,000,000: 12s. Last read position: chr11:110,435,851
INFO 2026-05-28 22:55:28 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:28:32s. Time for last 1,000,000: 11s. Last read position: chr11:118,136,995
INFO 2026-05-28 22:55:39 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:28:44s. Time for last 1,000,000: 11s. Last read position: chr11:118,902,881
INFO 2026-05-28 22:55:51 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:28:56s. Time for last 1,000,000: 11s. Last read position: chr11:121,059,993
INFO 2026-05-28 22:56:03 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:29:07s. Time for last 1,000,000: 11s. Last read position: chr11:126,409,297
INFO 2026-05-28 22:56:14 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:29:18s. Time for last 1,000,000: 10s. Last read position: chr12:880,740
INFO 2026-05-28 22:56:27 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:29:31s. Time for last 1,000,000: 12s. Last read position: chr12:6,523,292
INFO 2026-05-28 22:57:03 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:30:07s. Time for last 1,000,000: 36s. Last read position: chr12:6,915,841
INFO 2026-05-28 22:57:09 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:30:13s. Time for last 1,000,000: 6s. Last read position: chr12:11,839,258
INFO 2026-05-28 22:57:18 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:30:23s. Time for last 1,000,000: 9s. Last read position: chr12:24,817,920
INFO 2026-05-28 22:57:28 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:30:33s. Time for last 1,000,000: 10s. Last read position: chr12:32,328,186
INFO 2026-05-28 22:57:41 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:30:45s. Time for last 1,000,000: 12s. Last read position: chr12:47,235,548
INFO 2026-05-28 22:57:53 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:30:57s. Time for last 1,000,000: 12s. Last read position: chr12:49,128,125
INFO 2026-05-28 22:58:00 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:31:04s. Time for last 1,000,000: 6s. Last read position: chr12:49,795,638
INFO 2026-05-28 22:58:11 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:31:16s. Time for last 1,000,000: 11s. Last read position: chr12:53,289,430
INFO 2026-05-28 22:58:28 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:31:32s. Time for last 1,000,000: 16s. Last read position: chr12:55,685,275
INFO 2026-05-28 22:58:39 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:31:44s. Time for last 1,000,000: 11s. Last read position: chr12:56,244,389
INFO 2026-05-28 22:58:52 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:31:56s. Time for last 1,000,000: 12s. Last read position: chr12:57,095,269
INFO 2026-05-28 22:59:06 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:32:11s. Time for last 1,000,000: 14s. Last read position: chr12:59,681,930
INFO 2026-05-28 22:59:19 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:32:23s. Time for last 1,000,000: 12s. Last read position: chr12:70,532,095
INFO 2026-05-28 22:59:32 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:32:36s. Time for last 1,000,000: 13s. Last read position: chr12:79,845,342
INFO 2026-05-28 22:59:42 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:32:46s. Time for last 1,000,000: 10s. Last read position: chr12:98,600,017
INFO 2026-05-28 22:59:59 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:33:03s. Time for last 1,000,000: 17s. Last read position: chr12:105,142,452
INFO 2026-05-28 23:00:08 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:33:13s. Time for last 1,000,000: 9s. Last read position: chr12:110,545,973
INFO 2026-05-28 23:00:25 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:33:29s. Time for last 1,000,000: 16s. Last read position: chr12:114,674,191
INFO 2026-05-28 23:00:42 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:33:46s. Time for last 1,000,000: 17s. Last read position: chr12:120,215,383
INFO 2026-05-28 23:00:52 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:33:56s. Time for last 1,000,000: 10s. Last read position: chr12:122,505,567
INFO 2026-05-28 23:01:04 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:34:08s. Time for last 1,000,000: 11s. Last read position: chr12:124,337,118
INFO 2026-05-28 23:01:24 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:34:29s. Time for last 1,000,000: 20s. Last read position: chr12:131,912,060
INFO 2026-05-28 23:01:35 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:34:39s. Time for last 1,000,000: 10s. Last read position: chr12:133,191,559
INFO 2026-05-28 23:01:41 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:34:45s. Time for last 1,000,000: 5s. Last read position: chr13:24,435,131
INFO 2026-05-28 23:01:49 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:34:54s. Time for last 1,000,000: 8s. Last read position: chr13:35,822,733
INFO 2026-05-28 23:01:57 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:35:01s. Time for last 1,000,000: 7s. Last read position: chr13:46,045,056
INFO 2026-05-28 23:02:05 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:35:10s. Time for last 1,000,000: 8s. Last read position: chr13:59,992,474
INFO 2026-05-28 23:02:17 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:35:21s. Time for last 1,000,000: 11s. Last read position: chr13:85,794,068
INFO 2026-05-28 23:02:31 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:35:35s. Time for last 1,000,000: 14s. Last read position: chr13:102,839,666
INFO 2026-05-28 23:02:40 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:35:44s. Time for last 1,000,000: 9s. Last read position: chr13:112,522,339
INFO 2026-05-28 23:02:50 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:35:54s. Time for last 1,000,000: 9s. Last read position: chr14:21,213,044
INFO 2026-05-28 23:03:03 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:36:07s. Time for last 1,000,000: 12s. Last read position: chr14:23,560,366
INFO 2026-05-28 23:03:19 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:36:23s. Time for last 1,000,000: 16s. Last read position: chr14:31,169,458
INFO 2026-05-28 23:03:30 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:36:34s. Time for last 1,000,000: 10s. Last read position: chr14:49,585,971
INFO 2026-05-28 23:03:33 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:36:37s. Time for last 1,000,000: 2s. Last read position: chr14:49,853,709
INFO 2026-05-28 23:03:37 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:36:42s. Time for last 1,000,000: 4s. Last read position: chr14:51,720,137
INFO 2026-05-28 23:03:53 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:36:58s. Time for last 1,000,000: 16s. Last read position: chr14:58,645,812
INFO 2026-05-28 23:04:16 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:37:20s. Time for last 1,000,000: 22s. Last read position: chr14:64,126,728
INFO 2026-05-28 23:04:49 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:37:53s. Time for last 1,000,000: 32s. Last read position: chr14:68,925,572
INFO 2026-05-28 23:05:00 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:38:04s. Time for last 1,000,000: 11s. Last read position: chr14:74,781,836
INFO 2026-05-28 23:05:08 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:38:12s. Time for last 1,000,000: 8s. Last read position: chr14:88,638,811
INFO 2026-05-28 23:05:20 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:38:24s. Time for last 1,000,000: 11s. Last read position: chr14:97,048,750
INFO 2026-05-28 23:07:16 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:40:20s. Time for last 1,000,000: 116s. Last read position: chr14:102,041,631
INFO 2026-05-28 23:08:04 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:41:08s. Time for last 1,000,000: 47s. Last read position: chr14:103,522,325
INFO 2026-05-28 23:08:25 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:41:29s. Time for last 1,000,000: 20s. Last read position: chr14:104,947,161
INFO 2026-05-28 23:08:34 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:41:38s. Time for last 1,000,000: 9s. Last read position: chr15:22,939,214
INFO 2026-05-28 23:09:07 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:42:12s. Time for last 1,000,000: 33s. Last read position: chr15:32,445,466
INFO 2026-05-28 23:09:14 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:42:19s. Time for last 1,000,000: 6s. Last read position: chr15:39,589,881
INFO 2026-05-28 23:09:23 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:42:27s. Time for last 1,000,000: 8s. Last read position: chr15:41,371,552
INFO 2026-05-28 23:09:34 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:42:38s. Time for last 1,000,000: 10s. Last read position: chr15:42,727,699
INFO 2026-05-28 23:09:43 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:42:47s. Time for last 1,000,000: 9s. Last read position: chr15:43,793,914
INFO 2026-05-28 23:09:53 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:42:57s. Time for last 1,000,000: 10s. Last read position: chr15:48,878,490
INFO 2026-05-28 23:10:05 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:43:10s. Time for last 1,000,000: 12s. Last read position: chr15:55,183,355
INFO 2026-05-28 23:10:24 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:43:28s. Time for last 1,000,000: 18s. Last read position: chr15:57,273,028
INFO 2026-05-28 23:10:45 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:43:49s. Time for last 1,000,000: 20s. Last read position: chr15:60,382,406
INFO 2026-05-28 23:11:04 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:44:08s. Time for last 1,000,000: 18s. Last read position: chr15:64,500,028
INFO 2026-05-28 23:11:12 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:44:16s. Time for last 1,000,000: 8s. Last read position: chr15:67,830,214
INFO 2026-05-28 23:11:25 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:44:29s. Time for last 1,000,000: 13s. Last read position: chr15:72,206,821
INFO 2026-05-28 23:11:38 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:44:42s. Time for last 1,000,000: 12s. Last read position: chr15:73,998,061
INFO 2026-05-28 23:11:52 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:44:56s. Time for last 1,000,000: 13s. Last read position: chr15:75,392,738
INFO 2026-05-28 23:12:01 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:45:06s. Time for last 1,000,000: 9s. Last read position: chr15:78,891,501
INFO 2026-05-28 23:12:09 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:45:14s. Time for last 1,000,000: 7s. Last read position: chr15:84,670,725
INFO 2026-05-28 23:12:26 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:45:30s. Time for last 1,000,000: 16s. Last read position: chr15:89,582,703
INFO 2026-05-28 23:12:37 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:45:41s. Time for last 1,000,000: 10s. Last read position: chr15:90,910,674
INFO 2026-05-28 23:12:49 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:45:53s. Time for last 1,000,000: 11s. Last read position: chr15:99,132,919
INFO 2026-05-28 23:12:57 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:46:01s. Time for last 1,000,000: 8s. Last read position: chr16:656,345
INFO 2026-05-28 23:13:09 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:46:13s. Time for last 1,000,000: 11s. Last read position: chr16:1,788,740
INFO 2026-05-28 23:13:43 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:46:47s. Time for last 1,000,000: 33s. Last read position: chr16:2,111,371
INFO 2026-05-28 23:13:56 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:47:00s. Time for last 1,000,000: 13s. Last read position: chr16:2,764,004
INFO 2026-05-28 23:14:06 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:47:10s. Time for last 1,000,000: 10s. Last read position: chr16:3,672,750
INFO 2026-05-28 23:14:18 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:47:22s. Time for last 1,000,000: 11s. Last read position: chr16:11,676,160
INFO 2026-05-28 23:14:25 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:47:29s. Time for last 1,000,000: 7s. Last read position: chr16:14,948,940
INFO 2026-05-28 23:14:37 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:47:42s. Time for last 1,000,000: 12s. Last read position: chr16:16,322,714
INFO 2026-05-28 23:14:40 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:47:44s. Time for last 1,000,000: 2s. Last read position: chr16:18,430,873
INFO 2026-05-28 23:14:49 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:47:54s. Time for last 1,000,000: 9s. Last read position: chr16:21,405,231
INFO 2026-05-28 23:14:54 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:47:58s. Time for last 1,000,000: 4s. Last read position: chr16:22,527,809
INFO 2026-05-28 23:15:01 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:48:05s. Time for last 1,000,000: 7s. Last read position: chr16:28,098,461
INFO 2026-05-28 23:15:13 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:48:17s. Time for last 1,000,000: 11s. Last read position: chr16:29,454,203
INFO 2026-05-28 23:15:19 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:48:23s. Time for last 1,000,000: 6s. Last read position: chr16:30,067,452
INFO 2026-05-28 23:15:26 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:48:31s. Time for last 1,000,000: 7s. Last read position: chr16:30,669,470
INFO 2026-05-28 23:15:34 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:48:38s. Time for last 1,000,000: 7s. Last read position: chr16:31,186,801
INFO 2026-05-28 23:15:43 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:48:47s. Time for last 1,000,000: 8s. Last read position: chr16:47,365,806
INFO 2026-05-28 23:15:52 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:48:56s. Time for last 1,000,000: 9s. Last read position: chr16:51,140,730
INFO 2026-05-28 23:16:08 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:49:12s. Time for last 1,000,000: 16s. Last read position: chr16:55,483,099
INFO 2026-05-28 23:16:17 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:49:21s. Time for last 1,000,000: 9s. Last read position: chr16:57,382,549
INFO 2026-05-28 23:16:37 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:49:42s. Time for last 1,000,000: 20s. Last read position: chr16:58,546,726
INFO 2026-05-28 23:16:50 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:49:54s. Time for last 1,000,000: 12s. Last read position: chr16:67,154,950
INFO 2026-05-28 23:17:02 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:50:06s. Time for last 1,000,000: 11s. Last read position: chr16:67,880,757
INFO 2026-05-28 23:17:13 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:50:17s. Time for last 1,000,000: 10s. Last read position: chr16:69,322,209
INFO 2026-05-28 23:17:28 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:50:32s. Time for last 1,000,000: 15s. Last read position: chr16:70,271,874
INFO 2026-05-28 23:17:38 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:50:43s. Time for last 1,000,000: 10s. Last read position: chr16:71,764,644
INFO 2026-05-28 23:17:48 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:50:53s. Time for last 1,000,000: 10s. Last read position: chr16:75,630,479
INFO 2026-05-28 23:17:57 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:51:01s. Time for last 1,000,000: 8s. Last read position: chr16:85,806,800
INFO 2026-05-28 23:18:05 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:51:09s. Time for last 1,000,000: 8s. Last read position: chr16:89,284,830
INFO 2026-05-28 23:18:28 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:51:33s. Time for last 1,000,000: 23s. Last read position: chr17:747,823
INFO 2026-05-28 23:18:37 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:51:41s. Time for last 1,000,000: 8s. Last read position: chr17:1,478,723
INFO 2026-05-28 23:18:51 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:51:55s. Time for last 1,000,000: 13s. Last read position: chr17:2,365,242
INFO 2026-05-28 23:19:02 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:52:06s. Time for last 1,000,000: 11s. Last read position: chr17:4,719,350
INFO 2026-05-28 23:19:11 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:52:15s. Time for last 1,000,000: 9s. Last read position: chr17:5,462,507
INFO 2026-05-28 23:19:22 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:52:27s. Time for last 1,000,000: 11s. Last read position: chr17:7,403,366
INFO 2026-05-28 23:19:32 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:52:36s. Time for last 1,000,000: 9s. Last read position: chr17:7,676,028
INFO 2026-05-28 23:19:45 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:52:49s. Time for last 1,000,000: 13s. Last read position: chr17:8,513,586
INFO 2026-05-28 23:19:54 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:52:58s. Time for last 1,000,000: 8s. Last read position: chr17:15,636,086
INFO 2026-05-28 23:20:08 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:53:12s. Time for last 1,000,000: 13s. Last read position: chr17:17,172,755
INFO 2026-05-28 23:20:19 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:53:23s. Time for last 1,000,000: 11s. Last read position: chr17:18,235,162
INFO 2026-05-28 23:20:32 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:53:37s. Time for last 1,000,000: 13s. Last read position: chr17:19,785,967
INFO 2026-05-28 23:20:54 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:53:58s. Time for last 1,000,000: 21s. Last read position: chr17:28,381,555
INFO 2026-05-28 23:21:08 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:54:12s. Time for last 1,000,000: 13s. Last read position: chr17:28,749,029
INFO 2026-05-28 23:21:19 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:54:23s. Time for last 1,000,000: 11s. Last read position: chr17:30,274,103
INFO 2026-05-28 23:21:31 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:54:35s. Time for last 1,000,000: 11s. Last read position: chr17:32,477,545
INFO 2026-05-28 23:21:43 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:54:48s. Time for last 1,000,000: 12s. Last read position: chr17:36,254,193
INFO 2026-05-28 23:21:56 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:55:00s. Time for last 1,000,000: 12s. Last read position: chr17:38,277,712
INFO 2026-05-28 23:22:03 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:55:07s. Time for last 1,000,000: 6s. Last read position: chr17:39,708,399
INFO 2026-05-28 23:22:14 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:55:18s. Time for last 1,000,000: 10s. Last read position: chr17:40,404,831
INFO 2026-05-28 23:22:25 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:55:30s. Time for last 1,000,000: 11s. Last read position: chr17:42,202,340
INFO 2026-05-28 23:22:45 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:55:49s. Time for last 1,000,000: 19s. Last read position: chr17:42,991,167
INFO 2026-05-28 23:22:57 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:56:01s. Time for last 1,000,000: 12s. Last read position: chr17:44,321,709
INFO 2026-05-28 23:23:11 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:56:15s. Time for last 1,000,000: 14s. Last read position: chr17:44,932,181
INFO 2026-05-28 23:23:20 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:56:24s. Time for last 1,000,000: 8s. Last read position: chr17:46,751,594
INFO 2026-05-28 23:23:35 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:56:39s. Time for last 1,000,000: 15s. Last read position: chr17:48,071,440
INFO 2026-05-28 23:23:44 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:56:49s. Time for last 1,000,000: 9s. Last read position: chr17:50,076,985
INFO 2026-05-28 23:23:55 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:57:00s. Time for last 1,000,000: 10s. Last read position: chr17:50,665,234
INFO 2026-05-28 23:24:08 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:57:12s. Time for last 1,000,000: 12s. Last read position: chr17:57,257,530
INFO 2026-05-28 23:24:18 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:57:22s. Time for last 1,000,000: 9s. Last read position: chr17:59,644,295
INFO 2026-05-28 23:24:28 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:57:33s. Time for last 1,000,000: 10s. Last read position: chr17:59,681,359
INFO 2026-05-28 23:24:47 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:57:51s. Time for last 1,000,000: 18s. Last read position: chr17:60,268,342
INFO 2026-05-28 23:24:57 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:58:01s. Time for last 1,000,000: 10s. Last read position: chr17:63,815,664
INFO 2026-05-28 23:25:10 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:58:15s. Time for last 1,000,000: 13s. Last read position: chr17:67,912,686
INFO 2026-05-28 23:25:27 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:58:31s. Time for last 1,000,000: 16s. Last read position: chr17:72,574,366
INFO 2026-05-28 23:25:38 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:58:43s. Time for last 1,000,000: 11s. Last read position: chr17:75,667,393
INFO 2026-05-28 23:25:58 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:59:02s. Time for last 1,000,000: 19s. Last read position: chr17:75,878,116
INFO 2026-05-28 23:26:08 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:59:12s. Time for last 1,000,000: 10s. Last read position: chr17:77,307,185
INFO 2026-05-28 23:26:18 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:59:23s. Time for last 1,000,000: 10s. Last read position: chr17:79,781,751
INFO 2026-05-28 23:26:32 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:59:36s. Time for last 1,000,000: 13s. Last read position: chr17:81,510,631
INFO 2026-05-28 23:26:51 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:59:55s. Time for last 1,000,000: 18s. Last read position: chr17:81,823,478
INFO 2026-05-28 23:27:13 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 02:00:18s. Time for last 1,000,000: 22s. Last read position: chr17:82,049,685
INFO 2026-05-28 23:27:26 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 02:00:30s. Time for last 1,000,000: 12s. Last read position: chr17:82,443,505
INFO 2026-05-28 23:27:39 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 02:00:43s. Time for last 1,000,000: 13s. Last read position: chr18:2,927,731
INFO 2026-05-28 23:27:49 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 02:00:53s. Time for last 1,000,000: 10s. Last read position: chr18:9,396,302
INFO 2026-05-28 23:27:59 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 02:01:03s. Time for last 1,000,000: 10s. Last read position: chr18:23,557,123
INFO 2026-05-28 23:28:11 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 02:01:15s. Time for last 1,000,000: 11s. Last read position: chr18:50,276,905
INFO 2026-05-28 23:28:27 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 02:01:31s. Time for last 1,000,000: 16s. Last read position: chr18:63,327,012
INFO 2026-05-28 23:28:35 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 02:01:40s. Time for last 1,000,000: 8s. Last read position: chr19:630,131
INFO 2026-05-28 23:28:47 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 02:01:52s. Time for last 1,000,000: 11s. Last read position: chr19:1,091,791
INFO 2026-05-28 23:28:58 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 02:02:02s. Time for last 1,000,000: 10s. Last read position: chr19:1,440,086
INFO 2026-05-28 23:29:04 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 02:02:09s. Time for last 1,000,000: 6s. Last read position: chr19:1,987,234
INFO 2026-05-28 23:29:12 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 02:02:17s. Time for last 1,000,000: 7s. Last read position: chr19:2,434,874
INFO 2026-05-28 23:29:20 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 02:02:24s. Time for last 1,000,000: 7s. Last read position: chr19:3,544,757
INFO 2026-05-28 23:29:26 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 02:02:31s. Time for last 1,000,000: 6s. Last read position: chr19:4,433,407
INFO 2026-05-28 23:29:34 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 02:02:38s. Time for last 1,000,000: 7s. Last read position: chr19:5,137,976
INFO 2026-05-28 23:29:48 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 02:02:52s. Time for last 1,000,000: 13s. Last read position: chr19:5,824,171
INFO 2026-05-28 23:29:54 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 02:02:58s. Time for last 1,000,000: 5s. Last read position: chr19:6,417,992
INFO 2026-05-28 23:30:02 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 02:03:07s. Time for last 1,000,000: 8s. Last read position: chr19:7,550,621
INFO 2026-05-28 23:30:13 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 02:03:17s. Time for last 1,000,000: 10s. Last read position: chr19:8,951,261
INFO 2026-05-28 23:30:40 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 02:03:44s. Time for last 1,000,000: 27s. Last read position: chr19:10,362,395
INFO 2026-05-28 23:31:10 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 02:04:15s. Time for last 1,000,000: 30s. Last read position: chr19:11,193,262
INFO 2026-05-28 23:31:21 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 02:04:25s. Time for last 1,000,000: 10s. Last read position: chr19:12,731,378
INFO 2026-05-28 23:31:31 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 02:04:35s. Time for last 1,000,000: 10s. Last read position: chr19:13,135,506
INFO 2026-05-28 23:31:38 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 02:04:43s. Time for last 1,000,000: 7s. Last read position: chr19:14,136,415
INFO 2026-05-28 23:31:50 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 02:04:54s. Time for last 1,000,000: 11s. Last read position: chr19:14,566,768
INFO 2026-05-28 23:31:58 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 02:05:02s. Time for last 1,000,000: 8s. Last read position: chr19:15,273,004
INFO 2026-05-28 23:32:11 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 02:05:15s. Time for last 1,000,000: 13s. Last read position: chr19:17,152,656
INFO 2026-05-28 23:32:21 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 02:05:26s. Time for last 1,000,000: 10s. Last read position: chr19:17,943,540
INFO 2026-05-28 23:32:28 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 02:05:32s. Time for last 1,000,000: 6s. Last read position: chr19:18,768,485
INFO 2026-05-28 23:32:37 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 02:05:41s. Time for last 1,000,000: 9s. Last read position: chr19:19,535,509
INFO 2026-05-28 23:32:43 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 02:05:47s. Time for last 1,000,000: 6s. Last read position: chr19:32,692,495
INFO 2026-05-28 23:32:55 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 02:05:59s. Time for last 1,000,000: 11s. Last read position: chr19:34,430,582
INFO 2026-05-28 23:33:03 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 02:06:08s. Time for last 1,000,000: 8s. Last read position: chr19:35,720,821
INFO 2026-05-28 23:33:23 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 02:06:27s. Time for last 1,000,000: 19s. Last read position: chr19:36,142,917
INFO 2026-05-28 23:33:31 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 02:06:35s. Time for last 1,000,000: 7s. Last read position: chr19:38,647,749
INFO 2026-05-28 23:33:41 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 02:06:45s. Time for last 1,000,000: 10s. Last read position: chr19:38,838,580
INFO 2026-05-28 23:33:50 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 02:06:54s. Time for last 1,000,000: 8s. Last read position: chr19:39,435,673
INFO 2026-05-28 23:34:06 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 02:07:10s. Time for last 1,000,000: 15s. Last read position: chr19:40,255,233
INFO 2026-05-28 23:34:22 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 02:07:26s. Time for last 1,000,000: 16s. Last read position: chr19:41,238,057
INFO 2026-05-28 23:34:36 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 02:07:40s. Time for last 1,000,000: 13s. Last read position: chr19:41,956,825
INFO 2026-05-28 23:34:41 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 02:07:46s. Time for last 1,000,000: 5s. Last read position: chr19:42,287,190
INFO 2026-05-28 23:34:51 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 02:07:56s. Time for last 1,000,000: 10s. Last read position: chr19:42,294,841
INFO 2026-05-28 23:35:02 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 02:08:07s. Time for last 1,000,000: 10s. Last read position: chr19:43,648,874
INFO 2026-05-28 23:35:08 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 02:08:13s. Time for last 1,000,000: 5s. Last read position: chr19:44,974,485
INFO 2026-05-28 23:35:18 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 02:08:22s. Time for last 1,000,000: 9s. Last read position: chr19:45,428,701
INFO 2026-05-28 23:35:26 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 02:08:31s. Time for last 1,000,000: 8s. Last read position: chr19:45,884,236
INFO 2026-05-28 23:35:36 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 02:08:40s. Time for last 1,000,000: 9s. Last read position: chr19:46,787,403
INFO 2026-05-28 23:35:42 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 02:08:47s. Time for last 1,000,000: 6s. Last read position: chr19:48,149,797
INFO 2026-05-28 23:35:50 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 02:08:54s. Time for last 1,000,000: 7s. Last read position: chr19:48,966,580
INFO 2026-05-28 23:35:59 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 02:09:03s. Time for last 1,000,000: 9s. Last read position: chr19:49,595,696
INFO 2026-05-28 23:36:06 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 02:09:10s. Time for last 1,000,000: 6s. Last read position: chr19:49,805,688
INFO 2026-05-28 23:36:21 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 02:09:25s. Time for last 1,000,000: 15s. Last read position: chr19:50,482,534
INFO 2026-05-28 23:36:27 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 02:09:31s. Time for last 1,000,000: 5s. Last read position: chr19:53,352,106
INFO 2026-05-28 23:36:35 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 02:09:40s. Time for last 1,000,000: 8s. Last read position: chr19:54,458,336
INFO 2026-05-28 23:36:42 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 02:09:46s. Time for last 1,000,000: 6s. Last read position: chr19:55,613,600
INFO 2026-05-28 23:36:46 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 02:09:51s. Time for last 1,000,000: 4s. Last read position: chr19:57,641,492
INFO 2026-05-28 23:36:53 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 02:09:57s. Time for last 1,000,000: 6s. Last read position: chr20:462,358
INFO 2026-05-28 23:37:02 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 02:10:07s. Time for last 1,000,000: 9s. Last read position: chr20:3,545,757
INFO 2026-05-28 23:37:07 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 02:10:12s. Time for last 1,000,000: 5s. Last read position: chr20:5,561,506
INFO 2026-05-28 23:37:19 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 02:10:23s. Time for last 1,000,000: 11s. Last read position: chr20:18,398,612
INFO 2026-05-28 23:37:26 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 02:10:31s. Time for last 1,000,000: 7s. Last read position: chr20:25,754,467
INFO 2026-05-28 23:37:36 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 02:10:40s. Time for last 1,000,000: 9s. Last read position: chr20:33,670,691
INFO 2026-05-28 23:37:46 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 02:10:50s. Time for last 1,000,000: 9s. Last read position: chr20:35,504,895
INFO 2026-05-28 23:38:01 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 02:11:05s. Time for last 1,000,000: 15s. Last read position: chr20:36,816,220
INFO 2026-05-28 23:38:10 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 02:11:14s. Time for last 1,000,000: 9s. Last read position: chr20:43,463,411
INFO 2026-05-28 23:38:27 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 02:11:31s. Time for last 1,000,000: 17s. Last read position: chr20:45,953,696
INFO 2026-05-28 23:38:37 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 02:11:42s. Time for last 1,000,000: 10s. Last read position: chr20:50,191,864
INFO 2026-05-28 23:38:42 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 02:11:46s. Time for last 1,000,000: 4s. Last read position: chr20:57,407,546
INFO 2026-05-28 23:39:03 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 02:12:07s. Time for last 1,000,000: 20s. Last read position: chr20:58,991,028
INFO 2026-05-28 23:39:09 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 02:12:14s. Time for last 1,000,000: 6s. Last read position: chr20:62,315,948
INFO 2026-05-28 23:39:20 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 02:12:24s. Time for last 1,000,000: 10s. Last read position: chr20:62,813,492
INFO 2026-05-28 23:39:28 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 02:12:32s. Time for last 1,000,000: 7s. Last read position: chr20:63,742,734
INFO 2026-05-28 23:39:31 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 02:12:35s. Time for last 1,000,000: 3s. Last read position: chr21:8,213,177
INFO 2026-05-28 23:39:32 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 02:12:36s. Time for last 1,000,000: 0s. Last read position: chr21:8,216,919
INFO 2026-05-28 23:39:33 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 02:12:37s. Time for last 1,000,000: 0s. Last read position: chr21:8,258,926
INFO 2026-05-28 23:39:34 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 02:12:38s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,033
INFO 2026-05-28 23:39:35 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 02:12:39s. Time for last 1,000,000: 1s. Last read position: chr21:8,437,732
INFO 2026-05-28 23:39:36 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 02:12:40s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,138
INFO 2026-05-28 23:39:42 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 02:12:46s. Time for last 1,000,000: 6s. Last read position: chr21:25,982,439
INFO 2026-05-28 23:39:53 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:12:57s. Time for last 1,000,000: 10s. Last read position: chr21:33,575,662
INFO 2026-05-28 23:40:12 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:13:17s. Time for last 1,000,000: 19s. Last read position: chr21:39,390,827
INFO 2026-05-28 23:40:20 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:13:25s. Time for last 1,000,000: 8s. Last read position: chr21:45,468,591
INFO 2026-05-28 23:40:33 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:13:37s. Time for last 1,000,000: 12s. Last read position: chr21:46,206,733
INFO 2026-05-28 23:40:45 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:13:49s. Time for last 1,000,000: 12s. Last read position: chr22:17,818,448
INFO 2026-05-28 23:40:56 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:14:00s. Time for last 1,000,000: 10s. Last read position: chr22:20,582,722
INFO 2026-05-28 23:41:08 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:14:12s. Time for last 1,000,000: 12s. Last read position: chr22:23,967,002
INFO 2026-05-28 23:41:19 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:14:23s. Time for last 1,000,000: 10s. Last read position: chr22:29,272,221
INFO 2026-05-28 23:41:36 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:14:40s. Time for last 1,000,000: 17s. Last read position: chr22:29,636,758
INFO 2026-05-28 23:41:53 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:14:57s. Time for last 1,000,000: 16s. Last read position: chr22:32,485,062
INFO 2026-05-28 23:42:00 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:15:05s. Time for last 1,000,000: 7s. Last read position: chr22:36,316,566
INFO 2026-05-28 23:42:08 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:15:12s. Time for last 1,000,000: 7s. Last read position: chr22:37,922,001
INFO 2026-05-28 23:42:16 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:15:20s. Time for last 1,000,000: 7s. Last read position: chr22:39,511,885
INFO 2026-05-28 23:42:25 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:15:29s. Time for last 1,000,000: 9s. Last read position: chr22:41,515,481
INFO 2026-05-28 23:42:35 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:15:39s. Time for last 1,000,000: 9s. Last read position: chr22:43,159,400
INFO 2026-05-28 23:42:43 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 02:15:47s. Time for last 1,000,000: 7s. Last read position: chr22:50,201,150
INFO 2026-05-28 23:42:55 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 02:16:00s. Time for last 1,000,000: 12s. Last read position: chr22:50,627,189
INFO 2026-05-28 23:42:58 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 02:16:03s. Time for last 1,000,000: 3s. Last read position: chrX:10,455,053
INFO 2026-05-28 23:43:06 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 02:16:10s. Time for last 1,000,000: 7s. Last read position: chrX:17,613,354
INFO 2026-05-28 23:43:14 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 02:16:18s. Time for last 1,000,000: 7s. Last read position: chrX:24,076,730
INFO 2026-05-28 23:43:29 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 02:16:33s. Time for last 1,000,000: 15s. Last read position: chrX:40,935,687
INFO 2026-05-28 23:43:57 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:17:01s. Time for last 1,000,000: 28s. Last read position: chrX:46,758,720
INFO 2026-05-28 23:44:07 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:17:11s. Time for last 1,000,000: 9s. Last read position: chrX:47,915,995
INFO 2026-05-28 23:44:19 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:17:23s. Time for last 1,000,000: 11s. Last read position: chrX:49,036,731
INFO 2026-05-28 23:44:24 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:17:29s. Time for last 1,000,000: 5s. Last read position: chrX:53,194,494
INFO 2026-05-28 23:44:42 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:17:46s. Time for last 1,000,000: 17s. Last read position: chrX:53,591,097
INFO 2026-05-28 23:45:00 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:18:05s. Time for last 1,000,000: 18s. Last read position: chrX:65,356,993
INFO 2026-05-28 23:45:08 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:18:13s. Time for last 1,000,000: 7s. Last read position: chrX:71,250,132
INFO 2026-05-28 23:45:29 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:18:33s. Time for last 1,000,000: 20s. Last read position: chrX:74,592,871
INFO 2026-05-28 23:45:42 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:18:46s. Time for last 1,000,000: 13s. Last read position: chrX:81,297,229
INFO 2026-05-28 23:45:48 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:18:52s. Time for last 1,000,000: 5s. Last read position: chrX:108,625,730
INFO 2026-05-28 23:45:56 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:19:00s. Time for last 1,000,000: 8s. Last read position: chrX:119,469,802
INFO 2026-05-28 23:46:11 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:19:15s. Time for last 1,000,000: 15s. Last read position: chrX:124,086,675
INFO 2026-05-28 23:46:21 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:19:25s. Time for last 1,000,000: 9s. Last read position: chrX:134,425,264
INFO 2026-05-28 23:46:30 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:19:34s. Time for last 1,000,000: 8s. Last read position: chrX:147,936,544
INFO 2026-05-28 23:46:37 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:19:41s. Time for last 1,000,000: 7s. Last read position: chrX:152,767,420
INFO 2026-05-28 23:46:44 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:19:49s. Time for last 1,000,000: 7s. Last read position: chrX:153,777,620
INFO 2026-05-28 23:46:55 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:19:59s. Time for last 1,000,000: 10s. Last read position: chrX:154,018,289
INFO 2026-05-28 23:47:06 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 02:20:10s. Time for last 1,000,000: 11s. Last read position: chrX:154,352,311
INFO 2026-05-28 23:47:32 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 02:20:36s. Time for last 1,000,000: 26s. Last read position: chrX:154,359,768
INFO 2026-05-28 23:48:17 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 02:21:21s. Time for last 1,000,000: 45s. Last read position: chrX:154,364,824
INFO 2026-05-28 23:49:08 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 02:22:12s. Time for last 1,000,000: 50s. Last read position: chrX:154,402,746
INFO 2026-05-28 23:49:16 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 02:22:21s. Time for last 1,000,000: 8s. Last read position: chrX:154,532,262
INFO 2026-05-28 23:49:22 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 02:22:27s. Time for last 1,000,000: 5s. Last read position: chrY:2,842,190
INFO 2026-05-28 23:49:26 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 02:22:31s. Time for last 1,000,000: 3s. Last read position: chrM:13,466
INFO 2026-05-28 23:49:27 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 02:22:31s. Time for last 1,000,000: 0s. Last read position: GL000220.1:114,754
INFO 2026-05-28 23:49:28 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 02:22:32s. Time for last 1,000,000: 0s. Last read position: GL000220.1:151,588
INFO 2026-05-28 23:49:28 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 02:22:33s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,551
INFO 2026-05-28 23:49:29 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 02:22:33s. Time for last 1,000,000: 0s. Last read position: KI270733.1:129,472
INFO 2026-05-28 23:49:30 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 02:22:34s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,178
INFO 2026-05-28 23:49:30 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 02:22:35s. Time for last 1,000,000: 0s. Last read position: KI270733.1:174,652
INFO 2026-05-28 23:49:31 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 02:22:35s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,285
INFO 2026-05-28 23:49:32 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 02:22:36s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-05-28 23:49:33 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 02:22:37s. Time for last 1,000,000: 0s. Last read position: */*
INFO 2026-05-28 23:49:33 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 02:22:38s. Time for last 1,000,000: 0s. Last read position: */*
[Thu May 28 23:49:35 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 142.70 minutes.
Runtime.totalMemory()=3497000960