Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/e7e472702900f870eec5eb9cd82518/A549_FFPE_01_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/3231eeede2403a4f3cb44acb9111a7/A549_FFPE_01_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/aeee4282e155f59b6b109f7450db52/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/aeee4282e155f59b6b109f7450db52/.command.run
==> STAGING COMPLETE (4 inputs)

Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1