Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/d5bd7e2006bc29e01ad9e29bac9c07/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/0c7c43ea76d79be5ff886f68e12cee/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/0c7c43ea76d79be5ff886f68e12cee/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/d5bd7e2006bc29e01ad9e29bac9c07/.command.run
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory