AIH curated blacklist: matched 4 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 48
Pass (FILTER=PASS): 0 (0.0%)
Fail (FILTER=FAIL): 48 (100.0%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 4
All 4 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 13
confidence_below_min(medium<high): 9
confidence_below_min(low<high): 7
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 2
confidence_below_min(medium<high);aih_curated_blacklist: 1
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0);aih_curated_blacklist: 1
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 1
confidence_below_min(low<high);aih_curated_blacklist: 1
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(3.0<8.0);aih_curated_blacklist: 1
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1
Breakdown by confidence:
low: 0 pass, 31 fail (total: 31)
medium: 0 pass, 17 fail (total: 17)
Arriba filter: 48 rows -> 0 PASS; wrote LungN_FFPE_L03_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered.tsv and LungN_FFPE_L03_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: LungN_FFPE_L03_RNA_01_B23LG7FLT4_1.arriba.fusions.filter_summary.txt