Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/e56269161c0bedddce3ef620cba45c/SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/e1861880c8c39abc381d457ff34208/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/e1861880c8c39abc381d457ff34208/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory