Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/9c9bcf34621f9cb0a2f6a8f576e6bf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/9c9bcf34621f9cb0a2f6a8f576e6bf/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/7c1d978aacbc6aabc10392b5c3f44a/MCF7_FFPE_RNA_0001_B23LG7FLT4_3_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/7c1d978aacbc6aabc10392b5c3f44a/MCF7_FFPE_RNA_0001_B23LG7FLT4_3_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory