AIH curated blacklist: matched 8 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 448
Pass (FILTER=PASS): 72 (16.1%)
Fail (FILTER=FAIL): 376 (83.9%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 8
All 8 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 81
confidence_below_min(medium<high): 72
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 32
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 29
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 25
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 20
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 20
confidence_below_min(low<high): 19
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 16
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 11
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 10
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 7
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 7
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 6
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 5
Breakdown by confidence:
high: 72 pass, 6 fail (total: 78)
low: 0 pass, 202 fail (total: 202)
medium: 0 pass, 168 fail (total: 168)
Arriba filter: 448 rows -> 72 PASS; wrote SW780_FFPE_RNA_0001_B23LG7FLT4_1.arriba.fusions.filtered.tsv and SW780_FFPE_RNA_0001_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: SW780_FFPE_RNA_0001_B23LG7FLT4_1.arriba.fusions.filter_summary.txt