File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/167fe0e4305ed6867db97ad83a0cfe/.command.log
Size
7.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (786-O_FFPE_RNA_0001_B23LG7FLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-6ef41cd9-2e18-4687-842c-3f6f49c5643f/e6/b0f48d6d7a697674824d761d17ce05/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/167fe0e4305ed6867db97ad83a0cfe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/9da72f273866bccd83ed7895c28740/786-O_FFPE_RNA_0001_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/167fe0e4305ed6867db97ad83a0cfe/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/7f73005e5ec586332d9e3065d0e458/786-O_FFPE_RNA_0001_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/31 [00:00<?, ?it/s]LRP1B--AC078882.1
starfusion
arriba
CENPU--ENPP6
starfusion
arriba
LMNA--MEX3A
starfusion
DHX38--AMPD1
starfusion
arriba
BNC2--AL358117.1
starfusion
arriba
ZKSCAN7--KIF15
starfusion
arriba
AC008969.1--SMARCA4
starfusion
arriba
ARHGEF3--RRP9
starfusion
arriba
TLK2--AC240565.1
starfusion
MB21D2--FGF12
starfusion
GUSB--NAIP
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
HIF1A--SNAPC1
arriba
TRIM33--TRIM33
arriba
TMED7--TICAM2
arriba
TVP23C--CDRT4
arriba
KIAA0100--KIAA0100
arriba
ATAD2B--KLHL29
arriba
HMGB3P23--ACO1
arriba
RNA5SP281--ACO1
arriba
AL391557.1--SPAG17
arriba
RNA5SP56--SPAG17
arriba

Processing LRP1B--AC078882.1:   0%|          | 0/31 [00:00<?, ?it/s]
Processing LRP1B--AC078882.1:   3%|▎         | 1/31 [00:00<00:03,  8.09it/s]
Processing CENPU--ENPP6:   3%|▎         | 1/31 [00:00<00:03,  8.09it/s]     
Processing CENPU--ENPP6:   6%|▋         | 2/31 [00:00<00:03,  8.66it/s]
Processing LMNA--MEX3A:   6%|▋         | 2/31 [00:00<00:03,  8.66it/s] 
Processing LMNA--MEX3A:  10%|▉         | 3/31 [00:00<00:03,  8.87it/s]
Processing DHX38--AMPD1:  10%|▉         | 3/31 [00:00<00:03,  8.87it/s]
Processing DHX38--AMPD1:  13%|█▎        | 4/31 [00:00<00:03,  8.95it/s]
Processing BNC2--AL358117.1:  13%|█▎        | 4/31 [00:00<00:03,  8.95it/s]
Processing BNC2--AL358117.1:  16%|█▌        | 5/31 [00:00<00:02,  9.01it/s]
Processing ZKSCAN7--KIF15:  16%|█▌        | 5/31 [00:00<00:02,  9.01it/s]  
Processing ZKSCAN7--KIF15:  19%|█▉        | 6/31 [00:00<00:02,  9.03it/s]
Processing AC008969.1--SMARCA4:  19%|█▉        | 6/31 [00:00<00:02,  9.03it/s]
Processing AC008969.1--SMARCA4:  23%|██▎       | 7/31 [00:00<00:02,  9.05it/s]
Processing ARHGEF3--RRP9:  23%|██▎       | 7/31 [00:00<00:02,  9.05it/s]      
Processing ARHGEF3--RRP9:  26%|██▌       | 8/31 [00:00<00:02,  9.07it/s]
Processing TLK2--AC240565.1:  26%|██▌       | 8/31 [00:00<00:02,  9.07it/s]
Processing TLK2--AC240565.1:  29%|██▉       | 9/31 [00:01<00:02,  9.07it/s]
Processing MB21D2--FGF12:  29%|██▉       | 9/31 [00:01<00:02,  9.07it/s]   
Processing MB21D2--FGF12:  32%|███▏      | 10/31 [00:01<00:02,  9.09it/s]
Processing GUSB--NAIP:  32%|███▏      | 10/31 [00:01<00:02,  9.09it/s]   
Processing GUSB--NAIP:  35%|███▌      | 11/31 [00:01<00:02,  9.09it/s]
Processing PCDHGB2--PCDHGA8:  35%|███▌      | 11/31 [00:01<00:02,  9.09it/s]
Processing PCDHGB2--PCDHGA8:  39%|███▊      | 12/31 [00:01<00:02,  9.10it/s]
Processing PCDHGB2--PCDHGA10:  39%|███▊      | 12/31 [00:01<00:02,  9.10it/s]
Processing PCDHGB2--PCDHGA10:  42%|████▏     | 13/31 [00:01<00:01,  9.07it/s]
Processing PCDHGB2--PCDHGB6:  42%|████▏     | 13/31 [00:01<00:01,  9.07it/s] 
Processing PCDHGB2--PCDHGB6:  45%|████▌     | 14/31 [00:01<00:01,  9.07it/s]
Processing PCDHGB2--PCDHGC5:  45%|████▌     | 14/31 [00:01<00:01,  9.07it/s]
Processing PCDHGB2--PCDHGC5:  48%|████▊     | 15/31 [00:01<00:01,  9.07it/s]
Processing PCDHGB2--PCDHGA11:  48%|████▊     | 15/31 [00:01<00:01,  9.07it/s]
Processing PCDHGB2--PCDHGA11:  52%|█████▏    | 16/31 [00:01<00:01,  9.03it/s]
Processing PCDHGB2--PCDHGC4:  52%|█████▏    | 16/31 [00:01<00:01,  9.03it/s] 
Processing PCDHGB2--PCDHGC4:  55%|█████▍    | 17/31 [00:01<00:01,  9.04it/s]
Processing PCDHGB2--PCDHGB7:  55%|█████▍    | 17/31 [00:01<00:01,  9.04it/s]
Processing PCDHGB2--PCDHGB7:  58%|█████▊    | 18/31 [00:01<00:01,  9.04it/s]
Processing PCDHGB2--PCDHGA12:  58%|█████▊    | 18/31 [00:02<00:01,  9.04it/s]
Processing PCDHGB2--PCDHGA12:  61%|██████▏   | 19/31 [00:02<00:01,  9.04it/s]
Processing PCDHGB2--PCDHGA9:  61%|██████▏   | 19/31 [00:02<00:01,  9.04it/s] 
Processing PCDHGB2--PCDHGA9:  65%|██████▍   | 20/31 [00:02<00:01,  9.04it/s]
Processing PCDHGB2--PCDHGC3:  65%|██████▍   | 20/31 [00:02<00:01,  9.04it/s]
Processing PCDHGB2--PCDHGC3:  68%|██████▊   | 21/31 [00:02<00:01,  9.05it/s]
Processing HIF1A--SNAPC1:  68%|██████▊   | 21/31 [00:02<00:01,  9.05it/s]   
Processing HIF1A--SNAPC1:  71%|███████   | 22/31 [00:02<00:00,  9.04it/s]
Processing TRIM33--TRIM33:  71%|███████   | 22/31 [00:02<00:00,  9.04it/s]
Processing TRIM33--TRIM33:  74%|███████▍  | 23/31 [00:02<00:00,  9.04it/s]
Processing TMED7--TICAM2:  74%|███████▍  | 23/31 [00:02<00:00,  9.04it/s] 
Processing TMED7--TICAM2:  77%|███████▋  | 24/31 [00:02<00:00,  9.04it/s]
Processing TVP23C--CDRT4:  77%|███████▋  | 24/31 [00:02<00:00,  9.04it/s]
Processing TVP23C--CDRT4:  81%|████████  | 25/31 [00:02<00:00,  9.04it/s]
Processing KIAA0100--KIAA0100:  81%|████████  | 25/31 [00:02<00:00,  9.04it/s]
Processing KIAA0100--KIAA0100:  84%|████████▍ | 26/31 [00:02<00:00,  8.87it/s]
Processing ATAD2B--KLHL29:  84%|████████▍ | 26/31 [00:02<00:00,  8.87it/s]    
Processing ATAD2B--KLHL29:  87%|████████▋ | 27/31 [00:03<00:00,  8.78it/s]
Processing HMGB3P23--ACO1:  87%|████████▋ | 27/31 [00:03<00:00,  8.78it/s]
Processing HMGB3P23--ACO1:  90%|█████████ | 28/31 [00:03<00:00,  8.88it/s]
Processing RNA5SP281--ACO1:  90%|█████████ | 28/31 [00:03<00:00,  8.88it/s]
Processing RNA5SP281--ACO1:  94%|█████████▎| 29/31 [00:03<00:00,  8.94it/s]
Processing AL391557.1--SPAG17:  94%|█████████▎| 29/31 [00:03<00:00,  8.94it/s]
Processing AL391557.1--SPAG17:  97%|█████████▋| 30/31 [00:03<00:00,  9.03it/s]
Processing RNA5SP56--SPAG17:  97%|█████████▋| 30/31 [00:03<00:00,  9.03it/s]  
Processing RNA5SP56--SPAG17: 100%|██████████| 31/31 [00:03<00:00,  9.09it/s]
Processing RNA5SP56--SPAG17: 100%|██████████| 31/31 [00:03<00:00,  9.01it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory