Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/4645fce6f409abf0eecbf845f21e14/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/b04d41468662356d8d4b3f69f861a3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/b04d41468662356d8d4b3f69f861a3/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory