STAR --genomeDir ref_genome.fa.star.idx --readFilesIn input1/A673_FFPE_RNA_0001_B23LG7FLT4_1_1.fastp.fastq.gz input2/A673_FFPE_RNA_0001_B23LG7FLT4_1_2.fastp.fastq.gz --runThreadN 24 --outFileNamePrefix A673_FFPE_RNA_0001_B23LG7FLT4_1. --sjdbGTFfile ref_annot.gtf --outSAMattrRGline ID:A673_FFPE_RNA_0001_B23LG7FLT4_1 SM:A673_FFPE_RNA_0001_B23LG7FLT4_1 --twopassMode None --chimSegmentMin 12 --chimJunctionOverhangMin 5 --chimMultimapNmax 50 --chimScoreJunctionNonGTAG -4 --chimScoreSeparation 1 --alignIntronMax 140000 --outReadsUnmapped None --readFilesCommand zcat --outSAMtype BAM SortedByCoordinate --outSAMstrandField intronMotif --outSAMunmapped Within --chimOutJunctionFormat 1 --alignSJDBoverhangMin 10 --alignMatesGapMax 100000 --alignSJstitchMismatchNmax 5 -1 5 5 --chimMultimapScoreRange 3 --chimNonchimScoreDropMin 10 --peOverlapNbasesMin 12 --peOverlapMMp 0.1 --alignInsertionFlush Right --alignSplicedMateMapLmin 30 --alignSplicedMateMapLminOverLmate 0.5 --quantMode GeneCounts --runRNGseed 1 --chimOutType Junctions WithinBAM --limitBAMsortRAM 77309411328
	STAR version: 2.7.10a   compiled: 2022-01-14T18:50:00-05:00 :/home/dobin/data/STAR/STARcode/STAR.master/source
May 28 21:10:59 ..... started STAR run
May 28 21:10:59 ..... loading genome
May 28 21:11:13 ..... processing annotations GTF
May 28 21:11:23 ..... inserting junctions into the genome indices
May 28 21:12:39 ..... started mapping
May 28 22:13:00 ..... finished mapping
May 28 22:13:05 ..... started sorting BAM
May 28 22:18:09 ..... finished successfully