Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/09dad4487ed46e4ed3575e44cff3da/ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/c074335a5006b4a0a93a16371bfdeb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/c074335a5006b4a0a93a16371bfdeb/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory