Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/6efd1c2d733c9981ebf23a3f6e2ad8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/6efd1c2d733c9981ebf23a3f6e2ad8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/0025f39e8a8b65acae3c196652aa07/FFPE_HD789_01_RNA_0004_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/afd33d11e0f8c18c874358d8cd8976/FFPE_HD789_01_RNA_0004_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory