Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/a4c983d4f3928d425374c38a64b6c3/786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/f789d11d3dfd58975ba1c1dd754edc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/fbff2f812855f1592027fac7760b30/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/242750b9c7cf8cac1daa5d5ebe2b8c/786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/fbff2f812855f1592027fac7760b30/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 318294180
[W::hts_idx_load3] The index file is older than the data file: 786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	318294180
Known Splicing Events:	315860412
Partial Novel Splicing Events:	1651774
Novel Splicing Events:	693841
Filtered Splicing Events:	88153

Total splicing  Junctions:	630756
Known Splicing Junctions:	281784
Partial Novel Splicing Junctions:	189673
Novel Splicing Junctions:	159299

===================================================================
Create BED file ...
Create Interact file ...