.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/8b5d53ec406ed8dc68adbd31ea2b62/.command.err
Size: 25.3 KB
Task: NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1)
Attempt
Content

-ctat genome lib [/tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.PanbpDhWut/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.PanbpDhWut/./star-fusion.preliminary
-sample contains 9848892 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir  -J /tmp/nxf.PanbpDhWut/ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1.Chimeric.out.junction  -O /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.PanbpDhWut/ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=54545.45/min 
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[420000], rate=59154.93/min -building interval tree based on /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[410000], rate=53947.37/min -building interval tree based on /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

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[420000], rate=47368.42/min -building interval tree based on /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[410000], rate=39486.36/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 12000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 4800000.00 reads per min processed...  
 4285714.29 reads per min processed...  
 4000000.00 reads per min processed...  
 3818181.82 reads per min processed...  
 4000000.00 reads per min processed...  
 4153846.15 reads per min processed...  
 4285714.29 reads per min processed...  
 4125000.00 reads per min processed...  
 4000000.00 reads per min processed...  
 4105263.16 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.PanbpDhWut/ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -23925.794678
EM: Round [1] log likelihood: -23880.609303
EM: Round [2] log likelihood: -23858.020054
EM: Round [3] log likelihood: -23845.238550
EM: Round [4] log likelihood: -23837.877637
EM: Round [5] log likelihood: -23833.618112
EM: Round [6] log likelihood: -23831.117327
EM: Round [7] log likelihood: -23829.608506
EM: Round [8] log likelihood: -23828.664374
EM: Round [9] log likelihood: -23828.049606
EM: Round [10] log likelihood: -23827.633734
EM: Round [11] log likelihood: -23827.342788
EM: Round [12] log likelihood: -23827.133431
EM: Round [13] log likelihood: -23826.979284
EM: Round [14] log likelihood: -23826.863649
EM: Round [15] log likelihood: -23826.775563
EM: Round [16] log likelihood: -23826.707587
EM: Round [17] log likelihood: -23826.654535
EM: Round [18] log likelihood: -23826.612710
EM: Round [19] log likelihood: -23826.579430
EM: Round [20] log likelihood: -23826.552716
EM: Round [21] log likelihood: -23826.531094
EM: Round [22] log likelihood: -23826.513456
EM: Round [23] log likelihood: -23826.498956
EM: Round [24] log likelihood: -23826.486949
EM: Round [25] log likelihood: -23826.476935
EM: Round [26] log likelihood: -23826.468526
EM: Round [27] log likelihood: -23826.461420
EM: Round [28] log likelihood: -23826.455377
EM: Round [29] log likelihood: -23826.450206
EM: Round [30] log likelihood: -23826.445758
EM: Round [31] log likelihood: -23826.441909
EM: Round [32] log likelihood: -23826.438562
EM: Round [33] log likelihood: -23826.435636
EM: Round [34] log likelihood: -23826.433066
EM: Round [35] log likelihood: -23826.430799
EM: Round [36] log likelihood: -23826.428790
EM: Round [37] log likelihood: -23826.427002
EM: Round [38] log likelihood: -23826.425405
EM: Round [39] log likelihood: -23826.423971
EM: Round [40] log likelihood: -23826.422680
EM: Round [41] log likelihood: -23826.421513
EM: Round [42] log likelihood: -23826.420454
EM: Round [43] log likelihood: -23826.419490
EM: Round [44] log likelihood: -23826.418610
EM: Round [45] log likelihood: -23826.417803
EM: Round [46] log likelihood: -23826.417061
EM: Round [47] log likelihood: -23826.416378
EM: Round [48] log likelihood: -23826.415746
EM: Round [49] log likelihood: -23826.415159
EM: Round [50] log likelihood: -23826.414614
EM: Round [51] log likelihood: -23826.414106
EM: Round [52] log likelihood: -23826.413632
EM: Round [53] log likelihood: -23826.413187
EM: Round [54] log likelihood: -23826.412770
EM: Round [55] log likelihood: -23826.412378
EM: Round [56] log likelihood: -23826.412008
EM: Round [57] log likelihood: -23826.411659
EM: Round [58] log likelihood: -23826.411329
EM: Round [59] log likelihood: -23826.411016
EM: Round [60] log likelihood: -23826.410719
EM: Round [61] log likelihood: -23826.410437
EM: Round [62] log likelihood: -23826.410169
EM: Round [63] log likelihood: -23826.409913
EM: Round [64] log likelihood: -23826.409669
EM: Round [65] log likelihood: -23826.409437
EM: Round [66] log likelihood: -23826.409214
EM: Round [67] log likelihood: -23826.409001
EM: Round [68] log likelihood: -23826.408797
EM: Round [69] log likelihood: -23826.408602
EM: Round [70] log likelihood: -23826.408414
EM: Round [71] log likelihood: -23826.408234
EM: Round [72] log likelihood: -23826.408062
EM: Round [73] log likelihood: -23826.407895
EM: Round [74] log likelihood: -23826.407736
EM: Round [75] log likelihood: -23826.407582
EM: Round [76] log likelihood: -23826.407434
EM: Round [77] log likelihood: -23826.407292
EM: Round [78] log likelihood: -23826.407155
EM: Round [79] log likelihood: -23826.407023
EM: Round [80] log likelihood: -23826.406895
EM: Round [81] log likelihood: -23826.406773
EM: Round [82] log likelihood: -23826.406654
EM: Round [83] log likelihood: -23826.406540
EM: Round [84] log likelihood: -23826.406430
EM: Round [85] log likelihood: -23826.406323
EM: Round [86] log likelihood: -23826.406220
EM: Round [87] log likelihood: -23826.406121
EM: Stopping iterations at round 87 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -23905.875680
EM: Round [1] log likelihood: -23864.676478
EM: Round [2] log likelihood: -23844.569382
EM: Round [3] log likelihood: -23833.421248
EM: Round [4] log likelihood: -23827.099683
EM: Round [5] log likelihood: -23823.476133
EM: Round [6] log likelihood: -23821.359836
EM: Round [7] log likelihood: -23820.086285
EM: Round [8] log likelihood: -23819.290148
EM: Round [9] log likelihood: -23818.771776
EM: Round [10] log likelihood: -23818.420956
EM: Round [11] log likelihood: -23818.175334
EM: Round [12] log likelihood: -23817.998408
EM: Round [13] log likelihood: -23817.867963
EM: Round [14] log likelihood: -23817.769938
EM: Round [15] log likelihood: -23817.695100
EM: Round [16] log likelihood: -23817.637189
EM: Round [17] log likelihood: -23817.591843
EM: Round [18] log likelihood: -23817.555956
EM: Round [19] log likelihood: -23817.527276
EM: Round [20] log likelihood: -23817.504144
EM: Round [21] log likelihood: -23817.485325
EM: Round [22] log likelihood: -23817.469888
EM: Round [23] log likelihood: -23817.457127
EM: Round [24] log likelihood: -23817.446497
EM: Round [25] log likelihood: -23817.437580
EM: Round [26] log likelihood: -23817.430049
EM: Round [27] log likelihood: -23817.423647
EM: Round [28] log likelihood: -23817.418172
EM: Round [29] log likelihood: -23817.413463
EM: Round [30] log likelihood: -23817.409388
EM: Round [31] log likelihood: -23817.405845
EM: Round [32] log likelihood: -23817.402749
EM: Round [33] log likelihood: -23817.400029
EM: Round [34] log likelihood: -23817.397630
EM: Round [35] log likelihood: -23817.395504
EM: Round [36] log likelihood: -23817.393611
EM: Round [37] log likelihood: -23817.391920
EM: Round [38] log likelihood: -23817.390403
EM: Round [39] log likelihood: -23817.389036
EM: Round [40] log likelihood: -23817.387801
EM: Round [41] log likelihood: -23817.386680
EM: Round [42] log likelihood: -23817.385660
EM: Round [43] log likelihood: -23817.384728
EM: Round [44] log likelihood: -23817.383873
EM: Round [45] log likelihood: -23817.383088
EM: Round [46] log likelihood: -23817.382364
EM: Round [47] log likelihood: -23817.381694
EM: Round [48] log likelihood: -23817.381073
EM: Round [49] log likelihood: -23817.380495
EM: Round [50] log likelihood: -23817.379957
EM: Round [51] log likelihood: -23817.379453
EM: Round [52] log likelihood: -23817.378982
EM: Round [53] log likelihood: -23817.378539
EM: Round [54] log likelihood: -23817.378123
EM: Round [55] log likelihood: -23817.377731
EM: Round [56] log likelihood: -23817.377360
EM: Round [57] log likelihood: -23817.377010
EM: Round [58] log likelihood: -23817.376678
EM: Round [59] log likelihood: -23817.376362
EM: Round [60] log likelihood: -23817.376063
EM: Round [61] log likelihood: -23817.375778
EM: Round [62] log likelihood: -23817.375506
EM: Round [63] log likelihood: -23817.375247
EM: Round [64] log likelihood: -23817.375000
EM: Round [65] log likelihood: -23817.374764
EM: Round [66] log likelihood: -23817.374537
EM: Round [67] log likelihood: -23817.374321
EM: Round [68] log likelihood: -23817.374113
EM: Round [69] log likelihood: -23817.373914
EM: Round [70] log likelihood: -23817.373723
EM: Round [71] log likelihood: -23817.373540
EM: Round [72] log likelihood: -23817.373363
EM: Round [73] log likelihood: -23817.373194
EM: Round [74] log likelihood: -23817.373031
EM: Round [75] log likelihood: -23817.372874
EM: Round [76] log likelihood: -23817.372723
EM: Round [77] log likelihood: -23817.372578
EM: Round [78] log likelihood: -23817.372437
EM: Round [79] log likelihood: -23817.372302
EM: Round [80] log likelihood: -23817.372172
EM: Round [81] log likelihood: -23817.372047
EM: Round [82] log likelihood: -23817.371926
EM: Round [83] log likelihood: -23817.371809
EM: Round [84] log likelihood: -23817.371696
EM: Round [85] log likelihood: -23817.371587
EM: Round [86] log likelihood: -23817.371482
EM: Round [87] log likelihood: -23817.371381
EM: Round [88] log likelihood: -23817.371283
EM: Stopping iterations at round 88 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 9848892 > /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir > /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir --annotate /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir
-done, see /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 192, filtered: 1976)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.PanbpDhWut/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.PanbpDhWut/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000203688.6]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000239899.3]
WARNING, no entry stored in dbm for [ENSG00000241175.3]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000287356.1]
WARNING, no entry stored in dbm for [ENSG00000260236.1]
WARNING, no entry stored in dbm for [ENSG00000265758.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000260464.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000270641.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234996.4]
WARNING, no entry stored in dbm for [ENSG00000228862.4]
WARNING, no entry stored in dbm for [ENSG00000251504.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000227195.11]
WARNING, no entry stored in dbm for [ENSG00000266962.2]
WARNING, no entry stored in dbm for [ENSG00000272269.1]
WARNING, no entry stored in dbm for [ENSG00000234996.4]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [ENSG00000133519.12]
WARNING, no entry stored in dbm for [ENSG00000281903.2]
WARNING, no entry stored in dbm for [ENSG00000237339.5]
WARNING, no entry stored in dbm for [ENSG00000223823.1]
WARNING, no entry stored in dbm for [ENSG00000281912.1]
WARNING, no entry stored in dbm for [ENSG00000235703.6]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000273619.1]
WARNING, no entry stored in dbm for [ENSG00000225465.10]
WARNING, no entry stored in dbm for [ENSG00000261505.1]
WARNING, no entry stored in dbm for [ENSG00000287242.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000226950.8]
WARNING, no entry stored in dbm for [ENSG00000214347.8]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000236064.2]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000271434.3]
WARNING, no entry stored in dbm for [ENSG00000226312.7]
WARNING, no entry stored in dbm for [ENSG00000241743.4]
WARNING, no entry stored in dbm for [ENSG00000271270.7]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000249690.1]
WARNING, no entry stored in dbm for [ENSG00000274993.1]
WARNING, no entry stored in dbm for [ENSG00000272970.3]
WARNING, no entry stored in dbm for [ENSG00000230773.9]
WARNING, no entry stored in dbm for [ENSG00000288549.1]
WARNING, no entry stored in dbm for [ENSG00000288549.1]
WARNING, no entry stored in dbm for [ENSG00000205682.2]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000248978.2]
WARNING, no entry stored in dbm for [ENSG00000234222.6]
WARNING, no entry stored in dbm for [ENSG00000233491.8]
WARNING, no entry stored in dbm for [ENSG00000260573.4]
WARNING, no entry stored in dbm for [ENSG00000278959.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]


	* STAR-Fusion complete.  See output: /tmp/nxf.PanbpDhWut/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)