Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/a7b044af8f6ea2cf11212f5bb60bfb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/a7b044af8f6ea2cf11212f5bb60bfb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/990e506555f0f0d73fb87edafa3d38/SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/990e506555f0f0d73fb87edafa3d38/SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory