Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/dd4acfc25cbe736852a77bd4b8e0b5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/496e44d6b498e6f9b9e7a232312579/A549_FFPE_01_RNA_0001_B23LG7FLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/dd4acfc25cbe736852a77bd4b8e0b5/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory