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Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/e5906303a6d42ef83c715f683ca01c/.command.sh
Size
470 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1)
Attempt

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#!/bin/bash -euo pipefail
# Predict contamination from VAF features
predict_contamination.py \
    "ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1.features.csv" \
    --output "ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1.predictions.csv" \
    --threshold 0.9999 \


cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION":
    python: $(python3 --version | sed 's/Python //g')
    predict_contamination: 1.0.0
END_VERSIONS