Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/ea93e46da6bd582932d770dbd03bfe/A549_FFPE_01_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/c4c0914565bc23aec6700a3ad2aa61/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/c4c0914565bc23aec6700a3ad2aa61/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
paired = 282317
unpaired = 57631
MERGED PAIRED END READS = 282317
MATES PROCESSED = 622265
TOTAL READS     = 339948
DISTINCT READS  = 50887
DISTINCT COUNTS = 360
MAX COUNT       = 7833
COUNTS OF 1     = 31057
MAX TERMS       = 100
OBSERVED COUNTS (7834)
1	31057
2	7825
3	3328
4	1775
5	1140
6	759
7	545
8	446
9	376
10	298
11	275
12	222
13	182
14	161
15	158
16	114
17	96
18	97
19	90
20	88
21	75
22	77
23	37
24	75
25	51
26	51
27	55
28	46
29	41
30	42
31	30
32	46
33	44
34	32
35	50
36	28
37	27
38	28
39	23
40	27
41	17
42	19
43	19
44	22
45	19
46	11
47	20
48	15
49	14
50	20
51	18
52	12
53	8
54	12
55	12
56	5
57	15
58	9
59	10
60	10
61	10
62	13
63	12
64	4
65	10
66	8
67	6
68	6
69	11
70	7
71	10
72	8
73	9
74	13
75	11
76	11
77	8
78	9
79	8
80	5
81	7
82	10
83	8
84	4
85	8
86	5
87	4
88	6
89	1
90	4
91	13
92	3
93	6
94	4
95	8
96	3
97	3
98	3
99	6
100	4
101	5
102	3
103	3
104	2
105	6
106	4
107	1
108	2
109	1
110	4
111	8
112	3
113	4
114	3
115	2
116	4
117	2
118	2
119	3
120	5
121	4
122	1
123	5
124	3
125	1
126	2
127	2
128	3
129	1
130	2
131	3
132	5
133	3
134	1
135	1
136	3
137	4
138	3
139	4
140	2
141	2
142	1
143	7
146	5
148	1
149	2
150	1
152	2
153	2
154	1
155	1
156	2
157	3
158	1
160	3
161	2
162	2
164	1
165	4
166	1
167	3
168	2
169	1
171	5
172	1
173	1
174	2
175	1
176	1
177	1
179	2
180	2
183	1
184	1
185	1
186	2
189	2
190	1
191	1
192	1
194	1
195	1
196	1
197	1
198	1
199	1
200	1
203	1
204	1
205	1
206	1
207	2
208	2
209	2
210	2
211	1
213	1
217	1
218	1
219	1
220	1
222	1
225	1
226	1
227	1
228	1
229	1
232	1
233	1
235	1
236	1
239	1
240	1
241	1
245	1
246	1
247	1
248	1
249	1
250	1
253	1
260	1
262	1
263	1
264	1
266	1
267	1
268	1
269	1
271	1
272	1
274	1
275	1
276	1
277	1
278	1
279	1
280	1
282	1
284	1
288	1
291	2
293	1
295	1
296	1
297	2
298	1
300	1
307	1
311	1
313	1
319	2
324	1
326	1
328	2
332	1
334	1
335	1
350	1
354	1
356	1
363	1
369	1
377	1
378	1
379	1
380	1
382	2
387	2
388	1
390	1
392	2
395	1
396	1
411	1
421	1
422	1
425	1
429	1
435	1
441	1
444	1
445	2
446	1
453	1
458	1
459	1
461	2
473	1
485	1
505	2
522	1
530	1
541	2
545	1
562	1
564	2
571	1
577	1
581	1
588	1
603	1
606	1
607	1
609	1
610	1
618	1
634	1
637	1
652	1
664	1
676	1
681	1
683	1
687	2
699	1
706	1
720	1
750	1
778	2
779	1
823	1
910	1
941	1
942	1
958	1
960	1
986	1
1045	1
1089	1
1188	1
1209	1
1215	1
1241	1
1247	1
1253	1
1270	1
1291	1
1314	1
1315	1
1317	1
1319	1
1333	1
1359	1
1511	1
1536	1
1717	1
1845	1
1887	1
2247	1
2303	1
2563	1
2589	1
2858	1
3868	1
4052	1
5429	1
6605	1
7030	1
7833	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................................_............._.................
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[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]