AIH curated blacklist: matched 6 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 472
Pass (FILTER=PASS): 61 (12.9%)
Fail (FILTER=FAIL): 411 (87.1%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 6
All 6 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 109
confidence_below_min(medium<high): 74
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 26
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 26
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 23
confidence_below_min(low<high): 22
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 20
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 20
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 20
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 9
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 8
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 7
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 6
Breakdown by confidence:
high: 61 pass, 9 fail (total: 70)
low: 0 pass, 251 fail (total: 251)
medium: 0 pass, 151 fail (total: 151)
Arriba filter: 472 rows -> 61 PASS; wrote Hs746T_FFPE_RNA_0001_23LG7FLT4_1.arriba.fusions.filtered.tsv and Hs746T_FFPE_RNA_0001_23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: Hs746T_FFPE_RNA_0001_23LG7FLT4_1.arriba.fusions.filter_summary.txt