Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/242198fa4d3cf5c330b75ca069b8f6/EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/15128823e9e1c58d642a00f775a0cb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/15128823e9e1c58d642a00f775a0cb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/41f54a20152b67ec087fd421f9e34a/EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory