-ctat genome lib [/tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.tEN1YkSr8O/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary -sample contains 14388080 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir -J /tmp/nxf.tEN1YkSr8O/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.Chimeric.out.junction -O /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.tEN1YkSr8O/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.12 min). -mapping reads to genes [10000], rate=27272.73/min [20000], rate=29268.29/min [30000], rate=32727.27/min [40000], rate=35294.12/min [50000], rate=37037.04/min [60000], rate=36363.64/min [70000], rate=35000.00/min [80000], rate=33566.43/min [90000], rate=32727.27/min [100000], rate=32432.43/min [110000], rate=32352.94/min [120000], rate=32432.43/min [130000], rate=32500.00/min [140000], rate=31818.18/min [150000], rate=31578.95/min [160000], rate=30967.74/min [170000], rate=29651.16/min [180000], rate=28954.42/min [190000], rate=28934.01/min [200000], rate=29055.69/min [210000], rate=29508.20/min [220000], rate=29796.84/min [230000], rate=29677.42/min [240000], rate=28346.46/min [250000], rate=27624.31/min [260000], rate=27610.62/min [270000], rate=27551.02/min [280000], rate=27495.91/min [290000], rate=28019.32/min [300000], rate=28481.01/min [310000], rate=28881.99/min [320000], rate=28828.83/min [330000], rate=28947.37/min [340000], rate=29310.34/min [350000], rate=29829.55/min [360000], rate=30379.75/min [370000], rate=30962.34/min [380000], rate=31622.75/min [390000], rate=32098.77/min [400000], rate=32564.45/min [410000], rate=33020.13/min [420000], rate=33466.14/min [430000], rate=33947.37/min [440000], rate=34554.97/min [450000], rate=35110.53/min [460000], rate=35705.05/min [470000], rate=36061.38/min [480000], rate=36501.90/min [490000], rate=36842.11/min [500000], rate=37267.08/min [510000], rate=37731.20/min [520000], rate=38188.49/min [530000], rate=38686.13/min -building interval tree based on /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=13043.48/min [20000], rate=12903.23/min [30000], rate=13533.83/min [40000], rate=15189.87/min [50000], rate=16393.44/min [60000], rate=17391.30/min [70000], rate=18834.08/min [80000], rate=20168.07/min [90000], rate=21176.47/min [100000], rate=22727.27/min [110000], rate=24087.59/min [120000], rate=25352.11/min [130000], rate=26086.96/min [140000], rate=27184.47/min [150000], rate=28301.89/min [160000], rate=29003.02/min [170000], rate=29912.02/min [180000], rate=30594.90/min [190000], rate=30645.16/min [200000], rate=31331.59/min [210000], rate=31188.12/min [220000], rate=31058.82/min [230000], rate=30941.70/min [240000], rate=30703.62/min [250000], rate=31185.03/min [260000], rate=31643.00/min [270000], rate=32595.57/min [280000], rate=32558.14/min [290000], rate=33017.08/min [300000], rate=33088.24/min [310000], rate=33214.29/min [320000], rate=33684.21/min [330000], rate=34079.17/min [340000], rate=34401.35/min [350000], rate=34426.23/min [360000], rate=34449.76/min [370000], rate=34312.21/min [380000], rate=34545.45/min [390000], rate=34718.10/min [400000], rate=35087.72/min [410000], rate=35193.13/min [420000], rate=35643.56/min [430000], rate=36083.92/min [440000], rate=36213.99/min [450000], rate=36486.49/min [460000], rate=36556.29/min [470000], rate=36528.50/min [480000], rate=36875.80/min [490000], rate=37262.36/min [500000], rate=37593.98/min [510000], rate=37965.26/min [520000], rate=38376.38/min [530000], rate=38592.23/min -building interval tree based on /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=50000.00/min [20000], rate=27272.73/min [30000], rate=21428.57/min [40000], rate=19672.13/min [50000], rate=19108.28/min [60000], rate=19459.46/min [70000], rate=20388.35/min [80000], rate=21524.66/min [90000], rate=23275.86/min [100000], rate=24590.16/min [110000], rate=25882.35/min [120000], rate=27272.73/min [130000], rate=26896.55/min [140000], rate=27184.47/min [150000], rate=27439.02/min [160000], rate=28152.49/min [170000], rate=28895.18/min [180000], rate=29916.90/min [190000], rate=30810.81/min [200000], rate=31578.95/min [210000], rate=31818.18/min [220000], rate=31961.26/min [230000], rate=32318.50/min [240000], rate=32727.27/min [250000], rate=32188.84/min [260000], rate=31578.95/min [270000], rate=31034.48/min [280000], rate=30656.93/min [290000], rate=30366.49/min [300000], rate=30100.33/min [310000], rate=30194.81/min [320000], rate=30476.19/min [330000], rate=30136.99/min [340000], rate=30088.50/min [350000], rate=30390.74/min [360000], rate=30681.82/min [370000], rate=31005.59/min [380000], rate=31448.28/min [390000], rate=31836.73/min [400000], rate=32345.01/min [410000], rate=32843.79/min [420000], rate=33377.48/min [430000], rate=33858.27/min [440000], rate=34419.82/min [450000], rate=34482.76/min [460000], rate=34586.47/min [470000], rate=34643.73/min [480000], rate=34782.61/min [490000], rate=35125.45/min [500000], rate=35545.02/min [510000], rate=35957.70/min [520000], rate=36448.60/min [530000], rate=36763.01/min -building interval tree based on /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.12 min). -mapping reads to genes [10000], rate=46153.85/min [20000], rate=63157.89/min [30000], rate=43902.44/min [40000], rate=40677.97/min [50000], rate=41666.67/min [60000], rate=44444.44/min [70000], rate=43298.97/min [80000], rate=41379.31/min [90000], rate=39130.43/min [100000], rate=37037.04/min [110000], rate=37078.65/min [120000], rate=38095.24/min [130000], rate=39795.92/min [140000], rate=39810.43/min [150000], rate=39301.31/min [160000], rate=38709.68/min [170000], rate=39688.72/min [180000], rate=39560.44/min [190000], rate=39583.33/min [200000], rate=39344.26/min [210000], rate=39130.43/min [220000], rate=37714.29/min [230000], rate=37602.18/min [240000], rate=37209.30/min [250000], rate=35714.29/min [260000], rate=31707.32/min [270000], rate=28928.57/min [280000], rate=27406.20/min [290000], rate=26524.39/min [300000], rate=26200.87/min [310000], rate=26533.52/min [320000], rate=26853.15/min [330000], rate=27272.73/min [340000], rate=27755.10/min [350000], rate=28263.80/min [360000], rate=28761.65/min [370000], rate=29287.60/min [380000], rate=29882.04/min [390000], rate=30310.88/min [400000], rate=30690.54/min [410000], rate=31099.87/min [420000], rate=31539.42/min [430000], rate=32009.93/min [440000], rate=32552.40/min [450000], rate=33047.74/min [460000], rate=33253.01/min [470000], rate=33571.43/min [480000], rate=33962.26/min [490000], rate=34305.72/min [500000], rate=34682.08/min [510000], rate=35051.55/min [520000], rate=35535.31/min [530000], rate=35972.85/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir --filt_file /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 6000000.00 reads per min processed... 12000000.00 reads per min processed... 6000000.00 reads per min processed... 4800000.00 reads per min processed... 4285714.29 reads per min processed... 4000000.00 reads per min processed... 3500000.00 reads per min processed... 3428571.43 reads per min processed... 3600000.00 reads per min processed... 3750000.00 reads per min processed... 3882352.94 reads per min processed... 4000000.00 reads per min processed... 4105263.16 reads per min processed... 4200000.00 reads per min processed... 4090909.09 reads per min processed... 4173913.04 reads per min processed... 4250000.00 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.tEN1YkSr8O/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -50948.251535 EM: Round [1] log likelihood: -50886.468358 EM: Round [2] log likelihood: -50858.458261 EM: Round [3] log likelihood: -50843.958812 EM: Round [4] log likelihood: -50836.119044 EM: Round [5] log likelihood: -50831.785574 EM: Round [6] log likelihood: -50829.331436 EM: Round [7] log likelihood: -50827.895709 EM: Round [8] log likelihood: -50827.022607 EM: Round [9] log likelihood: -50826.469514 EM: Round [10] log likelihood: -50826.105039 EM: Round [11] log likelihood: -50825.856089 EM: Round [12] log likelihood: -50825.680642 EM: Round [13] log likelihood: -50825.553651 EM: Round [14] log likelihood: -50825.459641 EM: Round [15] log likelihood: -50825.388707 EM: Round [16] log likelihood: -50825.334306 EM: Round [17] log likelihood: -50825.291988 EM: Round [18] log likelihood: -50825.258651 EM: Round [19] log likelihood: -50825.232091 EM: Round [20] log likelihood: -50825.210706 EM: Round [21] log likelihood: -50825.193320 EM: Round [22] log likelihood: -50825.179055 EM: Round [23] log likelihood: -50825.167251 EM: Round [24] log likelihood: -50825.157402 EM: Round [25] log likelihood: -50825.149119 EM: Round [26] log likelihood: -50825.142104 EM: Round [27] log likelihood: -50825.136118 EM: Round [28] log likelihood: -50825.130978 EM: Round [29] log likelihood: -50825.126536 EM: Round [30] log likelihood: -50825.122674 EM: Round [31] log likelihood: -50825.119298 EM: Round [32] log likelihood: -50825.116331 EM: Round [33] log likelihood: -50825.113710 EM: Round [34] log likelihood: -50825.111385 EM: Round [35] log likelihood: -50825.109312 EM: Round [36] log likelihood: -50825.107458 EM: Round [37] log likelihood: -50825.105793 EM: Round [38] log likelihood: -50825.104292 EM: Round [39] log likelihood: -50825.102935 EM: Round [40] log likelihood: -50825.101704 EM: Round [41] log likelihood: -50825.100585 EM: Round [42] log likelihood: -50825.099564 EM: Round [43] log likelihood: -50825.098631 EM: Round [44] log likelihood: -50825.097776 EM: Round [45] log likelihood: -50825.096990 EM: Round [46] log likelihood: -50825.096268 EM: Round [47] log likelihood: -50825.095602 EM: Round [48] log likelihood: -50825.094987 EM: Round [49] log likelihood: -50825.094418 EM: Round [50] log likelihood: -50825.093891 EM: Round [51] log likelihood: -50825.093402 EM: Round [52] log likelihood: -50825.092947 EM: Round [53] log likelihood: -50825.092524 EM: Round [54] log likelihood: -50825.092130 EM: Round [55] log likelihood: -50825.091763 EM: Round [56] log likelihood: -50825.091419 EM: Round [57] log likelihood: -50825.091098 EM: Round [58] log likelihood: -50825.090798 EM: Round [59] log likelihood: -50825.090517 EM: Round [60] log likelihood: -50825.090253 EM: Round [61] log likelihood: -50825.090006 EM: Round [62] log likelihood: -50825.089773 EM: Round [63] log likelihood: -50825.089554 EM: Round [64] log likelihood: -50825.089349 EM: Round [65] log likelihood: -50825.089155 EM: Round [66] log likelihood: -50825.088972 EM: Round [67] log likelihood: -50825.088800 EM: Round [68] log likelihood: -50825.088638 EM: Round [69] log likelihood: -50825.088484 EM: Round [70] log likelihood: -50825.088340 EM: Round [71] log likelihood: -50825.088203 EM: Round [72] log likelihood: -50825.088073 EM: Round [73] log likelihood: -50825.087950 EM: Round [74] log likelihood: -50825.087834 EM: Round [75] log likelihood: -50825.087724 EM: Round [76] log likelihood: -50825.087620 EM: Round [77] log likelihood: -50825.087521 EM: Stopping iterations at round 77 due to insufficient improvement in likelihood. EM: Starting log likelihood: -50935.299886 EM: Round [1] log likelihood: -50879.488145 EM: Round [2] log likelihood: -50854.349368 EM: Round [3] log likelihood: -50841.488179 EM: Round [4] log likelihood: -50834.614670 EM: Round [5] log likelihood: -50830.847822 EM: Round [6] log likelihood: -50828.726181 EM: Round [7] log likelihood: -50827.489224 EM: Round [8] log likelihood: -50826.738854 EM: Round [9] log likelihood: -50826.264517 EM: Round [10] log likelihood: -50825.952571 EM: Round [11] log likelihood: -50825.739913 EM: Round [12] log likelihood: -50825.590308 EM: Round [13] log likelihood: -50825.482195 EM: Round [14] log likelihood: -50825.402268 EM: Round [15] log likelihood: -50825.342028 EM: Round [16] log likelihood: -50825.295870 EM: Round [17] log likelihood: -50825.259992 EM: Round [18] log likelihood: -50825.231747 EM: Round [19] log likelihood: -50825.209257 EM: Round [20] log likelihood: -50825.191160 EM: Round [21] log likelihood: -50825.176456 EM: Round [22] log likelihood: -50825.164401 EM: Round [23] log likelihood: -50825.154432 EM: Round [24] log likelihood: -50825.146122 EM: Round [25] log likelihood: -50825.139141 EM: Round [26] log likelihood: -50825.133233 EM: Round [27] log likelihood: -50825.128199 EM: Round [28] log likelihood: -50825.123881 EM: Round [29] log likelihood: -50825.120153 EM: Round [30] log likelihood: -50825.116917 EM: Round [31] log likelihood: -50825.114091 EM: Round [32] log likelihood: -50825.111610 EM: Round [33] log likelihood: -50825.109421 EM: Round [34] log likelihood: -50825.107480 EM: Round [35] log likelihood: -50825.105752 EM: Round [36] log likelihood: -50825.104208 EM: Round [37] log likelihood: -50825.102821 EM: Round [38] log likelihood: -50825.101571 EM: Round [39] log likelihood: -50825.100442 EM: Round [40] log likelihood: -50825.099417 EM: Round [41] log likelihood: -50825.098485 EM: Round [42] log likelihood: -50825.097635 EM: Round [43] log likelihood: -50825.096857 EM: Round [44] log likelihood: -50825.096143 EM: Round [45] log likelihood: -50825.095487 EM: Round [46] log likelihood: -50825.094883 EM: Round [47] log likelihood: -50825.094325 EM: Round [48] log likelihood: -50825.093810 EM: Round [49] log likelihood: -50825.093331 EM: Round [50] log likelihood: -50825.092888 EM: Round [51] log likelihood: -50825.092475 EM: Round [52] log likelihood: -50825.092091 EM: Round [53] log likelihood: -50825.091733 EM: Round [54] log likelihood: -50825.091398 EM: Round [55] log likelihood: -50825.091085 EM: Round [56] log likelihood: -50825.090792 EM: Round [57] log likelihood: -50825.090517 EM: Round [58] log likelihood: -50825.090260 EM: Round [59] log likelihood: -50825.090018 EM: Round [60] log likelihood: -50825.089790 EM: Round [61] log likelihood: -50825.089576 EM: Round [62] log likelihood: -50825.089374 EM: Round [63] log likelihood: -50825.089184 EM: Round [64] log likelihood: -50825.089005 EM: Round [65] log likelihood: -50825.088835 EM: Round [66] log likelihood: -50825.088675 EM: Round [67] log likelihood: -50825.088524 EM: Round [68] log likelihood: -50825.088380 EM: Round [69] log likelihood: -50825.088245 EM: Round [70] log likelihood: -50825.088116 EM: Round [71] log likelihood: -50825.087994 EM: Round [72] log likelihood: -50825.087879 EM: Round [73] log likelihood: -50825.087769 EM: Round [74] log likelihood: -50825.087665 EM: Round [75] log likelihood: -50825.087566 EM: Stopping iterations at round 75 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 14388080 > /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir > /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir --annotate /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir -done, see /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 406, filtered: 4073) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.tEN1YkSr8O/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.tEN1YkSr8O/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000229739.4] WARNING, no entry stored in dbm for [ENSG00000203930.12] WARNING, no entry stored in dbm for [ENSG00000256642.1] WARNING, no entry stored in dbm for [ENSG00000278733.1] WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [ENSG00000251314.2] WARNING, no entry stored in dbm for [ENSG00000259343.7] WARNING, no entry stored in dbm for [ENSG00000133519.12] WARNING, no entry stored in dbm for [ENSG00000215478.8] WARNING, no entry stored in dbm for [ENSG00000206585.1] WARNING, no entry stored in dbm for [ENSG00000278099.1] WARNING, no entry stored in dbm for [ENSG00000273768.1] WARNING, no entry stored in dbm for [ENSG00000277918.1] WARNING, no entry stored in dbm for [ENSG00000206737.1] WARNING, no entry stored in dbm for [ENSG00000207389.1] WARNING, no entry stored in dbm for [ENSG00000207513.1] WARNING, no entry stored in dbm for [ENSG00000206588.1] WARNING, no entry stored in dbm for [ENSG00000206596.1] WARNING, no entry stored in dbm for [ENSG00000207005.1] WARNING, no entry stored in dbm for [ENSG00000206652.1] WARNING, no entry stored in dbm for [ENSG00000279217.1] WARNING, no entry stored in dbm for [ENSG00000279217.1] WARNING, no entry stored in dbm for [ENSG00000284731.1] WARNING, no entry stored in dbm for [ENSG00000261659.2] WARNING, no entry stored in dbm for [ENSG00000281732.1] WARNING, no entry stored in dbm for [ENSG00000241933.1] WARNING, no entry stored in dbm for [ENSG00000228889.7] WARNING, no entry stored in dbm for [ENSG00000245156.1] WARNING, no entry stored in dbm for [ENSG00000266179.2] WARNING, no entry stored in dbm for [ENSG00000108448.22] WARNING, no entry stored in dbm for [ENSG00000180279.7] WARNING, no entry stored in dbm for [ENSG00000237401.8] WARNING, no entry stored in dbm for [ENSG00000205853.12] WARNING, no entry stored in dbm for [ENSG00000249031.1] WARNING, no entry stored in dbm for [ENSG00000277072.5] WARNING, no entry stored in dbm for [ENSG00000253600.1] WARNING, no entry stored in dbm for [ENSG00000283627.1] WARNING, no entry stored in dbm for [ENSG00000254088.1] WARNING, no entry stored in dbm for [ENSG00000234771.3] WARNING, no entry stored in dbm for [ENSG00000227906.8] WARNING, no entry stored in dbm for [ENSG00000228463.10] WARNING, no entry stored in dbm for [ENSG00000226356.2] WARNING, no entry stored in dbm for [ENSG00000239437.3] WARNING, no entry stored in dbm for [ENSG00000266420.2] WARNING, no entry stored in dbm for [ENSG00000239899.3] WARNING, no entry stored in dbm for [ENSG00000241175.3] WARNING, no entry stored in dbm for [ENSG00000244642.3] WARNING, no entry stored in dbm for [ENSG00000201428.1] WARNING, no entry stored in dbm for [ENSG00000199683.1] WARNING, no entry stored in dbm for [ENSG00000237000.1] WARNING, no entry stored in dbm for [ENSG00000227195.11] WARNING, no entry stored in dbm for [ENSG00000230082.1] WARNING, no entry stored in dbm for [ENSG00000180385.8] WARNING, no entry stored in dbm for [ENSG00000244257.5] WARNING, no entry stored in dbm for [ENSG00000239888.3] WARNING, no entry stored in dbm for [ENSG00000281344.1] WARNING, no entry stored in dbm for [ENSG00000279217.1] WARNING, no entry stored in dbm for [ENSG00000225342.2] WARNING, no entry stored in dbm for [ENSG00000229739.4] WARNING, no entry stored in dbm for [ENSG00000288538.1] WARNING, no entry stored in dbm for [ENSG00000233590.1] WARNING, no entry stored in dbm for [ENSG00000286999.1] WARNING, no entry stored in dbm for [ENSG00000255875.2] WARNING, no entry stored in dbm for [ENSG00000232706.3] WARNING, no entry stored in dbm for [ENSG00000181577.16] WARNING, no entry stored in dbm for [ENSG00000283183.2] WARNING, no entry stored in dbm for [ENSG00000245532.9] WARNING, no entry stored in dbm for [ENSG00000249476.2] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000283426.1] WARNING, no entry stored in dbm for [ENSG00000230130.1] WARNING, no entry stored in dbm for [ENSG00000198763.3] WARNING, no entry stored in dbm for [ENSG00000288107.1] WARNING, no entry stored in dbm for [ENSG00000258725.2] WARNING, no entry stored in dbm for [ENSG00000270960.1] WARNING, no entry stored in dbm for [ENSG00000275212.3] WARNING, no entry stored in dbm for [ENSG00000267779.7] WARNING, no entry stored in dbm for [ENSG00000253819.2] WARNING, no entry stored in dbm for [ENSG00000225108.1] WARNING, no entry stored in dbm for [ENSG00000278811.4] WARNING, no entry stored in dbm for [ENSG00000203441.2] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000260807.7] WARNING, no entry stored in dbm for [ENSG00000131885.17] WARNING, no entry stored in dbm for [ENSG00000253716.6] WARNING, no entry stored in dbm for [ENSG00000261471.1] WARNING, no entry stored in dbm for [ENSG00000229992.1] WARNING, no entry stored in dbm for [ENSG00000206337.12] WARNING, no entry stored in dbm for [ENSG00000231721.7] WARNING, no entry stored in dbm for [ENSG00000255471.1] WARNING, no entry stored in dbm for [ENSG00000231375.1] WARNING, no entry stored in dbm for [ENSG00000241684.6] WARNING, no entry stored in dbm for [ENSG00000263883.1] WARNING, no entry stored in dbm for [ENSG00000283103.3] WARNING, no entry stored in dbm for [ENSG00000197085.11] WARNING, no entry stored in dbm for [ENSG00000231700.3] WARNING, no entry stored in dbm for [ENSG00000227068.1] WARNING, no entry stored in dbm for [ENSG00000230630.5] WARNING, no entry stored in dbm for [ENSG00000226989.1] WARNING, no entry stored in dbm for [ENSG00000244642.3] WARNING, no entry stored in dbm for [ENSG00000278969.1] WARNING, no entry stored in dbm for [ENSG00000172460.17] WARNING, no entry stored in dbm for [ENSG00000270190.1] WARNING, no entry stored in dbm for [ENSG00000249072.1] WARNING, no entry stored in dbm for [ENSG00000271699.5] WARNING, no entry stored in dbm for [ENSG00000260672.1] WARNING, no entry stored in dbm for [ENSG00000244198.7] WARNING, no entry stored in dbm for [ENSG00000251143.1] WARNING, no entry stored in dbm for [ENSG00000258779.8] WARNING, no entry stored in dbm for [ENSG00000275285.1] WARNING, no entry stored in dbm for [ENSG00000246203.2] WARNING, no entry stored in dbm for [ENSG00000226668.5] WARNING, no entry stored in dbm for [ENSG00000213613.2] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000184991.3] WARNING, no entry stored in dbm for [ENSG00000233955.1] WARNING, no entry stored in dbm for [ENSG00000225871.2] WARNING, no entry stored in dbm for [ENSG00000264635.1] WARNING, no entry stored in dbm for [ENSG00000282924.1] WARNING, no entry stored in dbm for [ENSG00000280287.1] WARNING, no entry stored in dbm for [ENSG00000265533.1] WARNING, no entry stored in dbm for [ENSG00000267053.8] WARNING, no entry stored in dbm for [ENSG00000228998.4] WARNING, no entry stored in dbm for [ENSG00000254102.2] WARNING, no entry stored in dbm for [ENSG00000279581.1] WARNING, no entry stored in dbm for [ENSG00000223628.2] WARNING, no entry stored in dbm for [ENSG00000231414.1] WARNING, no entry stored in dbm for [ENSG00000279077.1] WARNING, no entry stored in dbm for [ENSG00000280161.1] WARNING, no entry stored in dbm for [ENSG00000285106.2] WARNING, no entry stored in dbm for [ENSG00000268189.2] WARNING, no entry stored in dbm for [ENSG00000264578.1] WARNING, no entry stored in dbm for [ENSG00000239556.4] WARNING, no entry stored in dbm for [ENSG00000272655.2] * STAR-Fusion complete. See output: /tmp/nxf.tEN1YkSr8O/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)