-ctat genome lib [/tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.ChsbaIZtXF/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary -sample contains 45127756 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir -J /tmp/nxf.ChsbaIZtXF/BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -O /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.ChsbaIZtXF/BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.12 min). -mapping reads to genes [10000], rate=16666.67/min [20000], rate=18461.54/min [30000], rate=20224.72/min [40000], rate=21428.57/min [50000], rate=22556.39/min [60000], rate=23376.62/min [70000], rate=25000.00/min [80000], rate=26519.34/min [90000], rate=27835.05/min [100000], rate=26431.72/min [110000], rate=24812.03/min [120000], rate=24080.27/min [130000], rate=23926.38/min [140000], rate=23463.69/min [150000], rate=23684.21/min [160000], rate=23940.15/min [170000], rate=24228.03/min [180000], rate=24434.39/min [190000], rate=25054.95/min [200000], rate=25477.71/min [210000], rate=25661.91/min [220000], rate=26242.54/min [230000], rate=26589.60/min [240000], rate=27169.81/min [250000], rate=27881.04/min [260000], rate=28676.47/min [270000], rate=29454.55/min [280000], rate=30053.67/min [290000], rate=30579.96/min [300000], rate=31034.48/min [310000], rate=30897.01/min [320000], rate=31168.83/min [330000], rate=31528.66/min [340000], rate=31924.88/min [350000], rate=32407.41/min [360000], rate=32876.71/min [370000], rate=33433.73/min [380000], rate=34029.85/min [390000], rate=34718.10/min [400000], rate=35502.96/min [410000], rate=36283.19/min [420000], rate=37004.41/min [430000], rate=37609.33/min [440000], rate=38150.29/min [450000], rate=38352.27/min [460000], rate=38709.68/min [470000], rate=39058.17/min [480000], rate=39183.67/min [490000], rate=39569.31/min [500000], rate=39840.64/min [510000], rate=39947.78/min [520000], rate=40572.17/min [530000], rate=41191.71/min [540000], rate=41914.62/min [550000], rate=42471.04/min [560000], rate=42857.14/min [570000], rate=42910.92/min [580000], rate=43122.68/min [590000], rate=43276.28/min [600000], rate=43902.44/min [610000], rate=44471.45/min [620000], rate=45090.91/min [630000], rate=45487.36/min [640000], rate=45823.39/min [650000], rate=45990.57/min [660000], rate=46315.79/min [670000], rate=46581.69/min [680000], rate=46735.40/min [690000], rate=47260.27/min [700000], rate=47673.10/min [710000], rate=48027.06/min [720000], rate=48160.54/min [730000], rate=48451.33/min [740000], rate=48952.59/min [750000], rate=49559.47/min [760000], rate=50109.89/min [770000], rate=50381.68/min [780000], rate=50594.59/min [790000], rate=50749.46/min [800000], rate=51009.56/min [810000], rate=51319.96/min [820000], rate=51572.33/min [830000], rate=51767.15/min [840000], rate=52012.38/min [850000], rate=52147.24/min [860000], rate=52439.02/min [870000], rate=52834.01/min [880000], rate=53118.71/min [890000], rate=53240.28/min [900000], rate=53307.01/min [910000], rate=53372.43/min [920000], rate=53488.37/min [930000], rate=53653.85/min [940000], rate=53663.18/min [950000], rate=53023.26/min [960000], rate=52602.74/min [970000], rate=52291.11/min [980000], rate=52220.25/min -building interval tree based on /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.13 min). -mapping reads to genes [10000], rate=37500.00/min [20000], rate=41379.31/min [30000], rate=56250.00/min [40000], rate=70588.24/min [50000], rate=85714.29/min [60000], rate=100000.00/min [70000], rate=89361.70/min [80000], rate=84210.53/min [90000], rate=80597.01/min [100000], rate=83333.33/min [110000], rate=83544.30/min [120000], rate=82758.62/min [130000], rate=79591.84/min [140000], rate=84848.48/min [150000], rate=87378.64/min [160000], rate=86486.49/min [170000], rate=87179.49/min [180000], rate=90000.00/min [190000], rate=93442.62/min [200000], rate=98360.66/min [210000], rate=102439.02/min [220000], rate=103937.01/min [230000], rate=103759.40/min [240000], rate=99310.34/min [250000], rate=98684.21/min [260000], rate=98113.21/min [270000], rate=96428.57/min [280000], rate=94915.25/min [290000], rate=97206.70/min [300000], rate=97297.30/min [310000], rate=95384.62/min [320000], rate=95522.39/min [330000], rate=95652.17/min [340000], rate=97607.66/min [350000], rate=100000.00/min [360000], rate=102857.14/min [370000], rate=103255.81/min [380000], rate=100884.96/min [390000], rate=98319.33/min [400000], rate=98360.66/min [410000], rate=98795.18/min [420000], rate=99212.60/min [430000], rate=98850.57/min [440000], rate=97058.82/min [450000], rate=98181.82/min [460000], rate=98571.43/min [470000], rate=98947.37/min [480000], rate=98630.14/min [490000], rate=100684.93/min [500000], rate=102389.08/min [510000], rate=104436.86/min [520000], rate=105405.41/min [530000], rate=106000.00/min [540000], rate=105882.35/min [550000], rate=106109.32/min [560000], rate=104347.83/min [570000], rate=103951.37/min [580000], rate=104191.62/min [590000], rate=103508.77/min [600000], rate=101983.00/min [610000], rate=88834.95/min [620000], rate=78315.79/min [630000], rate=71726.76/min [640000], rate=65753.42/min [650000], rate=61611.37/min [660000], rate=58149.78/min [670000], rate=54918.03/min [680000], rate=53613.67/min [690000], rate=53076.92/min [700000], rate=52763.82/min [710000], rate=52269.94/min [720000], rate=52048.19/min [730000], rate=51773.05/min [740000], rate=51034.48/min [750000], rate=50732.81/min [760000], rate=50498.34/min [770000], rate=50162.87/min [780000], rate=50268.53/min [790000], rate=50371.94/min [800000], rate=50420.17/min [810000], rate=50625.00/min [820000], rate=50984.46/min [830000], rate=51234.57/min [840000], rate=51115.62/min [850000], rate=51204.82/min [860000], rate=50937.81/min [870000], rate=50827.65/min [880000], rate=50769.23/min [890000], rate=50954.20/min [900000], rate=51282.05/min [910000], rate=51460.89/min [920000], rate=51588.79/min [930000], rate=51714.55/min [940000], rate=51790.63/min [950000], rate=50892.86/min [960000], rate=50217.96/min [970000], rate=50042.99/min [980000], rate=49662.16/min -building interval tree based on /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.13 min). -mapping reads to genes [10000], rate=20000.00/min [20000], rate=24489.80/min [30000], rate=25714.29/min [40000], rate=25806.45/min [50000], rate=28571.43/min [60000], rate=28346.46/min [70000], rate=28571.43/min [80000], rate=29629.63/min [90000], rate=30857.14/min [100000], rate=30000.00/min [110000], rate=29074.89/min [120000], rate=29268.29/min [130000], rate=29657.79/min [140000], rate=29787.23/min [150000], rate=29900.33/min [160000], rate=30769.23/min [170000], rate=31875.00/min [180000], rate=33027.52/min [190000], rate=33333.33/min [200000], rate=32608.70/min [210000], rate=32558.14/min [220000], rate=32273.84/min [230000], rate=32547.17/min [240000], rate=32801.82/min [250000], rate=33112.58/min [260000], rate=33476.39/min [270000], rate=33891.21/min [280000], rate=34426.23/min [290000], rate=34592.45/min [300000], rate=35294.12/min [310000], rate=36116.50/min [320000], rate=36501.90/min [330000], rate=36330.28/min [340000], rate=35978.84/min [350000], rate=35897.44/min [360000], rate=35467.98/min [370000], rate=35238.10/min [380000], rate=35458.79/min [390000], rate=35725.19/min [400000], rate=35874.44/min [410000], rate=35912.41/min [420000], rate=36468.89/min [430000], rate=36909.87/min [440000], rate=37130.80/min [450000], rate=37604.46/min [460000], rate=38121.55/min [470000], rate=37751.00/min [480000], rate=37402.60/min [490000], rate=37309.64/min [500000], rate=37546.93/min [510000], rate=37871.29/min [520000], rate=38095.24/min [530000], rate=38313.25/min [540000], rate=38479.81/min [550000], rate=38823.53/min [560000], rate=39115.25/min [570000], rate=39400.92/min [580000], rate=39726.03/min [590000], rate=40090.60/min [600000], rate=40404.04/min [610000], rate=40848.21/min [620000], rate=41287.46/min [630000], rate=41629.96/min [640000], rate=41875.68/min [650000], rate=42162.16/min [660000], rate=42352.94/min [670000], rate=42584.75/min [680000], rate=42812.17/min [690000], rate=42901.55/min [700000], rate=43121.15/min [710000], rate=43425.08/min [720000], rate=43769.00/min [730000], rate=44153.23/min [740000], rate=44003.96/min [750000], rate=44117.65/min [760000], rate=44186.05/min [770000], rate=44380.40/min [780000], rate=44486.69/min [790000], rate=44716.98/min [800000], rate=44901.78/min [810000], rate=45125.35/min [820000], rate=45429.36/min [830000], rate=45940.96/min [840000], rate=46196.15/min [850000], rate=46448.09/min [860000], rate=46739.13/min [870000], rate=46690.52/min [880000], rate=46767.05/min [890000], rate=46678.32/min [900000], rate=46431.64/min [910000], rate=46389.12/min [920000], rate=46386.55/min [930000], rate=46461.28/min [940000], rate=46650.12/min [950000], rate=46952.22/min [960000], rate=47329.50/min [970000], rate=47626.84/min [980000], rate=47882.74/min -building interval tree based on /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=46153.85/min [20000], rate=48000.00/min [30000], rate=41860.47/min [40000], rate=31168.83/min [50000], rate=28037.38/min [60000], rate=29032.26/min [70000], rate=28965.52/min [80000], rate=29813.66/min [90000], rate=31034.48/min [100000], rate=31578.95/min [110000], rate=32352.94/min [120000], rate=32432.43/min [130000], rate=30708.66/min [140000], rate=29370.63/min [150000], rate=29032.26/min [160000], rate=28402.37/min [170000], rate=28021.98/min [180000], rate=28125.00/min [190000], rate=28428.93/min [200000], rate=28639.62/min [210000], rate=28899.08/min [220000], rate=29268.29/min [230000], rate=29934.92/min [240000], rate=30508.47/min [250000], rate=30800.82/min [260000], rate=31013.92/min [270000], rate=31517.51/min [280000], rate=32061.07/min [290000], rate=32830.19/min [300000], rate=32727.27/min [310000], rate=32631.58/min [320000], rate=32487.31/min [330000], rate=32619.44/min [340000], rate=32797.43/min [350000], rate=33070.87/min [360000], rate=33592.53/min [370000], rate=33944.95/min [380000], rate=34545.45/min [390000], rate=34718.10/min [400000], rate=35036.50/min [410000], rate=35193.13/min [420000], rate=35643.56/min [430000], rate=35983.26/min [440000], rate=36464.09/min [450000], rate=36885.25/min [460000], rate=37398.37/min [470000], rate=37650.20/min [480000], rate=37209.30/min [490000], rate=36981.13/min [500000], rate=37453.18/min [510000], rate=37046.00/min [520000], rate=37054.63/min [530000], rate=37280.19/min [540000], rate=37327.19/min [550000], rate=37288.14/min [560000], rate=37374.86/min [570000], rate=37377.05/min [580000], rate=37379.16/min [590000], rate=37223.97/min [600000], rate=37460.98/min [610000], rate=37731.96/min [620000], rate=37997.96/min [630000], rate=38104.84/min [640000], rate=38247.01/min [650000], rate=38537.55/min [660000], rate=38899.80/min [670000], rate=39257.81/min [680000], rate=39193.08/min [690000], rate=38691.59/min [700000], rate=38461.54/min [710000], rate=38517.18/min [720000], rate=38675.02/min [730000], rate=38864.24/min [740000], rate=39050.13/min [750000], rate=39028.62/min [760000], rate=39141.63/min [770000], rate=39352.64/min [780000], rate=39493.67/min [790000], rate=39336.10/min [800000], rate=39215.69/min [810000], rate=39193.55/min [820000], rate=39423.08/min [830000], rate=39712.92/min [840000], rate=39904.99/min [850000], rate=40094.34/min [860000], rate=40375.59/min [870000], rate=40622.57/min [880000], rate=41057.54/min [890000], rate=41363.28/min [900000], rate=41602.47/min [910000], rate=41839.08/min [920000], rate=41723.36/min [930000], rate=41486.99/min [940000], rate=41137.86/min [950000], rate=41036.72/min [960000], rate=41172.27/min [970000], rate=41159.83/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir --filt_file /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 5142857.14 reads per min processed... 4200000.00 reads per min processed... 4000000.00 reads per min processed... 3600000.00 reads per min processed... 3529411.76 reads per min processed... 3473684.21 reads per min processed... 3272727.27 reads per min processed... 3250000.00 reads per min processed... 3230769.23 reads per min processed... 3103448.28 reads per min processed... 3000000.00 reads per min processed... 3000000.00 reads per min processed... 3000000.00 reads per min processed... 3000000.00 reads per min processed... 3000000.00 reads per min processed... 3000000.00 reads per min processed... 3069767.44 reads per min processed... 3136363.64 reads per min processed... 3200000.00 reads per min processed... 3191489.36 reads per min processed... 3183673.47 reads per min processed... 3240000.00 reads per min processed... 3230769.23 reads per min processed... 3222222.22 reads per min processed... 3214285.71 reads per min processed... 3206896.55 reads per min processed... 3254237.29 reads per min processed... 3300000.00 reads per min processed... 3290322.58 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.ChsbaIZtXF/BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -64171.726154 EM: Round [1] log likelihood: -63942.802738 EM: Round [2] log likelihood: -63854.260197 EM: Round [3] log likelihood: -63811.319613 EM: Round [4] log likelihood: -63788.390622 EM: Round [5] log likelihood: -63775.514365 EM: Round [6] log likelihood: -63767.976701 EM: Round [7] log likelihood: -63763.369408 EM: Round [8] log likelihood: -63760.425295 EM: Round [9] log likelihood: -63758.461434 EM: Round [10] log likelihood: -63757.098859 EM: Round [11] log likelihood: -63756.119987 EM: Round [12] log likelihood: -63755.395271 EM: Round [13] log likelihood: -63754.844732 EM: Round [14] log likelihood: -63754.417241 EM: Round [15] log likelihood: -63754.079042 EM: Round [16] log likelihood: -63753.807175 EM: Round [17] log likelihood: -63753.585607 EM: Round [18] log likelihood: -63753.402871 EM: Round [19] log likelihood: -63753.250594 EM: Round [20] log likelihood: -63753.122542 EM: Round [21] log likelihood: -63753.013998 EM: Round [22] log likelihood: -63752.921339 EM: Round [23] log likelihood: -63752.841740 EM: Round [24] log likelihood: -63752.772975 EM: Round [25] log likelihood: -63752.713267 EM: Round [26] log likelihood: -63752.661186 EM: Round [27] log likelihood: -63752.615566 EM: Round [28] log likelihood: -63752.575454 EM: Round [29] log likelihood: -63752.540059 EM: Round [30] log likelihood: -63752.508726 EM: Round [31] log likelihood: -63752.480904 EM: Round [32] log likelihood: -63752.456130 EM: Round [33] log likelihood: -63752.434010 EM: Round [34] log likelihood: -63752.414212 EM: Round [35] log likelihood: -63752.396450 EM: Round [36] log likelihood: -63752.380478 EM: Round [37] log likelihood: -63752.366085 EM: Round [38] log likelihood: -63752.353089 EM: Round [39] log likelihood: -63752.341330 EM: Round [40] log likelihood: -63752.330671 EM: Round [41] log likelihood: -63752.320991 EM: Round [42] log likelihood: -63752.312185 EM: Round [43] log likelihood: -63752.304160 EM: Round [44] log likelihood: -63752.296835 EM: Round [45] log likelihood: -63752.290136 EM: Round [46] log likelihood: -63752.284002 EM: Round [47] log likelihood: -63752.278376 EM: Round [48] log likelihood: -63752.273207 EM: Round [49] log likelihood: -63752.268451 EM: Round [50] log likelihood: -63752.264068 EM: Round [51] log likelihood: -63752.260024 EM: Round [52] log likelihood: -63752.256286 EM: Round [53] log likelihood: -63752.252827 EM: Round [54] log likelihood: -63752.249620 EM: Round [55] log likelihood: -63752.246644 EM: Round [56] log likelihood: -63752.243878 EM: Round [57] log likelihood: -63752.241303 EM: Round [58] log likelihood: -63752.238902 EM: Round [59] log likelihood: -63752.236662 EM: Round [60] log likelihood: -63752.234567 EM: Round [61] log likelihood: -63752.232607 EM: Round [62] log likelihood: -63752.230770 EM: Round [63] log likelihood: -63752.229046 EM: Round [64] log likelihood: -63752.227425 EM: Round [65] log likelihood: -63752.225900 EM: Round [66] log likelihood: -63752.224463 EM: Round [67] log likelihood: -63752.223108 EM: Round [68] log likelihood: -63752.221827 EM: Round [69] log likelihood: -63752.220616 EM: Round [70] log likelihood: -63752.219469 EM: Round [71] log likelihood: -63752.218381 EM: Round [72] log likelihood: -63752.217349 EM: Round [73] log likelihood: -63752.216368 EM: Round [74] log likelihood: -63752.215434 EM: Round [75] log likelihood: -63752.214544 EM: Round [76] log likelihood: -63752.213696 EM: Round [77] log likelihood: -63752.212886 EM: Round [78] log likelihood: -63752.212112 EM: Round [79] log likelihood: -63752.211371 EM: Round [80] log likelihood: -63752.210662 EM: Round [81] log likelihood: -63752.209982 EM: Round [82] log likelihood: -63752.209329 EM: Round [83] log likelihood: -63752.208702 EM: Round [84] log likelihood: -63752.208100 EM: Round [85] log likelihood: -63752.207520 EM: Round [86] log likelihood: -63752.206961 EM: Round [87] log likelihood: -63752.206423 EM: Round [88] log likelihood: -63752.205903 EM: Round [89] log likelihood: -63752.205402 EM: Round [90] log likelihood: -63752.204917 EM: Round [91] log likelihood: -63752.204449 EM: Round [92] log likelihood: -63752.203995 EM: Round [93] log likelihood: -63752.203556 EM: Round [94] log likelihood: -63752.203131 EM: Round [95] log likelihood: -63752.202718 EM: Round [96] log likelihood: -63752.202318 EM: Round [97] log likelihood: -63752.201930 EM: Round [98] log likelihood: -63752.201552 EM: Round [99] log likelihood: -63752.201185 EM: Round [100] log likelihood: -63752.200829 EM: Round [101] log likelihood: -63752.200481 EM: Round [102] log likelihood: -63752.200144 EM: Round [103] log likelihood: -63752.199815 EM: Round [104] log likelihood: -63752.199494 EM: Round [105] log likelihood: -63752.199181 EM: Round [106] log likelihood: -63752.198877 EM: Round [107] log likelihood: -63752.198579 EM: Round [108] log likelihood: -63752.198289 EM: Round [109] log likelihood: -63752.198006 EM: Round [110] log likelihood: -63752.197729 EM: Round [111] log likelihood: -63752.197458 EM: Round [112] log likelihood: -63752.197194 EM: Round [113] log likelihood: -63752.196936 EM: Round [114] log likelihood: -63752.196683 EM: Round [115] log likelihood: -63752.196436 EM: Round [116] log likelihood: -63752.196194 EM: Round [117] log likelihood: -63752.195957 EM: Round [118] log likelihood: -63752.195725 EM: Round [119] log likelihood: -63752.195498 EM: Round [120] log likelihood: -63752.195275 EM: Round [121] log likelihood: -63752.195057 EM: Round [122] log likelihood: -63752.194843 EM: Round [123] log likelihood: -63752.194634 EM: Round [124] log likelihood: -63752.194428 EM: Round [125] log likelihood: -63752.194227 EM: Round [126] log likelihood: -63752.194029 EM: Round [127] log likelihood: -63752.193835 EM: Round [128] log likelihood: -63752.193645 EM: Round [129] log likelihood: -63752.193458 EM: Round [130] log likelihood: -63752.193275 EM: Round [131] log likelihood: -63752.193095 EM: Round [132] log likelihood: -63752.192919 EM: Round [133] log likelihood: -63752.192745 EM: Round [134] log likelihood: -63752.192575 EM: Round [135] log likelihood: -63752.192408 EM: Round [136] log likelihood: -63752.192243 EM: Round [137] log likelihood: -63752.192082 EM: Round [138] log likelihood: -63752.191923 EM: Round [139] log likelihood: -63752.191767 EM: Round [140] log likelihood: -63752.191614 EM: Round [141] log likelihood: -63752.191463 EM: Round [142] log likelihood: -63752.191315 EM: Round [143] log likelihood: -63752.191170 EM: Round [144] log likelihood: -63752.191027 EM: Round [145] log likelihood: -63752.190886 EM: Round [146] log likelihood: -63752.190748 EM: Round [147] log likelihood: -63752.190612 EM: Round [148] log likelihood: -63752.190478 EM: Round [149] log likelihood: -63752.190346 EM: Round [150] log likelihood: -63752.190217 EM: Round [151] log likelihood: -63752.190089 EM: Round [152] log likelihood: -63752.189964 EM: Round [153] log likelihood: -63752.189841 EM: Round [154] log likelihood: -63752.189720 EM: Round [155] log likelihood: -63752.189600 EM: Round [156] log likelihood: -63752.189483 EM: Round [157] log likelihood: -63752.189368 EM: Round [158] log likelihood: -63752.189254 EM: Round [159] log likelihood: -63752.189142 EM: Round [160] log likelihood: -63752.189032 EM: Round [161] log likelihood: -63752.188924 EM: Round [162] log likelihood: -63752.188817 EM: Round [163] log likelihood: -63752.188712 EM: Round [164] log likelihood: -63752.188609 EM: Round [165] log likelihood: -63752.188507 EM: Round [166] log likelihood: -63752.188407 EM: Round [167] log likelihood: -63752.188308 EM: Stopping iterations at round 167 due to insufficient improvement in likelihood. EM: Starting log likelihood: -64101.826272 EM: Round [1] log likelihood: -63899.525753 EM: Round [2] log likelihood: -63824.771062 EM: Round [3] log likelihood: -63789.518744 EM: Round [4] log likelihood: -63771.021082 EM: Round [5] log likelihood: -63760.754679 EM: Round [6] log likelihood: -63754.792379 EM: Round [7] log likelihood: -63751.166157 EM: Round [8] log likelihood: -63748.854991 EM: Round [9] log likelihood: -63747.314496 EM: Round [10] log likelihood: -63746.245102 EM: Round [11] log likelihood: -63745.475911 EM: Round [12] log likelihood: -63744.905630 EM: Round [13] log likelihood: -63744.471878 EM: Round [14] log likelihood: -63744.134804 EM: Round [15] log likelihood: -63743.868064 EM: Round [16] log likelihood: -63743.653698 EM: Round [17] log likelihood: -63743.479125 EM: Round [18] log likelihood: -63743.335314 EM: Round [19] log likelihood: -63743.215647 EM: Round [20] log likelihood: -63743.115184 EM: Round [21] log likelihood: -63743.030175 EM: Round [22] log likelihood: -63742.957734 EM: Round [23] log likelihood: -63742.895611 EM: Round [24] log likelihood: -63742.842030 EM: Round [25] log likelihood: -63742.795575 EM: Round [26] log likelihood: -63742.755107 EM: Round [27] log likelihood: -63742.719701 EM: Round [28] log likelihood: -63742.688598 EM: Round [29] log likelihood: -63742.661174 EM: Round [30] log likelihood: -63742.636911 EM: Round [31] log likelihood: -63742.615375 EM: Round [32] log likelihood: -63742.596202 EM: Round [33] log likelihood: -63742.579086 EM: Round [34] log likelihood: -63742.563764 EM: Round [35] log likelihood: -63742.550016 EM: Round [36] log likelihood: -63742.537649 EM: Round [37] log likelihood: -63742.526500 EM: Round [38] log likelihood: -63742.516427 EM: Round [39] log likelihood: -63742.507308 EM: Round [40] log likelihood: -63742.499036 EM: Round [41] log likelihood: -63742.491518 EM: Round [42] log likelihood: -63742.484673 EM: Round [43] log likelihood: -63742.478430 EM: Round [44] log likelihood: -63742.472725 EM: Round [45] log likelihood: -63742.467503 EM: Round [46] log likelihood: -63742.462716 EM: Round [47] log likelihood: -63742.458321 EM: Round [48] log likelihood: -63742.454278 EM: Round [49] log likelihood: -63742.450553 EM: Round [50] log likelihood: -63742.447117 EM: Round [51] log likelihood: -63742.443942 EM: Round [52] log likelihood: -63742.441004 EM: Round [53] log likelihood: -63742.438280 EM: Round [54] log likelihood: -63742.435753 EM: Round [55] log likelihood: -63742.433403 EM: Round [56] log likelihood: -63742.431216 EM: Round [57] log likelihood: -63742.429177 EM: Round [58] log likelihood: -63742.427273 EM: Round [59] log likelihood: -63742.425493 EM: Round [60] log likelihood: -63742.423827 EM: Round [61] log likelihood: -63742.422265 EM: Round [62] log likelihood: -63742.420798 EM: Round [63] log likelihood: -63742.419419 EM: Round [64] log likelihood: -63742.418121 EM: Round [65] log likelihood: -63742.416897 EM: Round [66] log likelihood: -63742.415742 EM: Round [67] log likelihood: -63742.414650 EM: Round [68] log likelihood: -63742.413617 EM: Round [69] log likelihood: -63742.412638 EM: Round [70] log likelihood: -63742.411709 EM: Round [71] log likelihood: -63742.410826 EM: Round [72] log likelihood: -63742.409987 EM: Round [73] log likelihood: -63742.409188 EM: Round [74] log likelihood: -63742.408426 EM: Round [75] log likelihood: -63742.407699 EM: Round [76] log likelihood: -63742.407004 EM: Round [77] log likelihood: -63742.406339 EM: Round [78] log likelihood: -63742.405703 EM: Round [79] log likelihood: -63742.405093 EM: Round [80] log likelihood: -63742.404507 EM: Round [81] log likelihood: -63742.403945 EM: Round [82] log likelihood: -63742.403405 EM: Round [83] log likelihood: -63742.402885 EM: Round [84] log likelihood: -63742.402384 EM: Round [85] log likelihood: -63742.401901 EM: Round [86] log likelihood: -63742.401435 EM: Round [87] log likelihood: -63742.400985 EM: Round [88] log likelihood: -63742.400550 EM: Round [89] log likelihood: -63742.400129 EM: Round [90] log likelihood: -63742.399722 EM: Round [91] log likelihood: -63742.399328 EM: Round [92] log likelihood: -63742.398946 EM: Round [93] log likelihood: -63742.398575 EM: Round [94] log likelihood: -63742.398216 EM: Round [95] log likelihood: -63742.397866 EM: Round [96] log likelihood: -63742.397527 EM: Round [97] log likelihood: -63742.397197 EM: Round [98] log likelihood: -63742.396876 EM: Round [99] log likelihood: -63742.396563 EM: Round [100] log likelihood: -63742.396259 EM: Round [101] log likelihood: -63742.395962 EM: Round [102] log likelihood: -63742.395673 EM: Round [103] log likelihood: -63742.395391 EM: Round [104] log likelihood: -63742.395116 EM: Round [105] log likelihood: -63742.394848 EM: Round [106] log likelihood: -63742.394586 EM: Round [107] log likelihood: -63742.394329 EM: Round [108] log likelihood: -63742.394079 EM: Round [109] log likelihood: -63742.393834 EM: Round [110] log likelihood: -63742.393595 EM: Round [111] log likelihood: -63742.393361 EM: Round [112] log likelihood: -63742.393132 EM: Round [113] log likelihood: -63742.392907 EM: Round [114] log likelihood: -63742.392688 EM: Round [115] log likelihood: -63742.392473 EM: Round [116] log likelihood: -63742.392262 EM: Round [117] log likelihood: -63742.392055 EM: Round [118] log likelihood: -63742.391853 EM: Round [119] log likelihood: -63742.391655 EM: Round [120] log likelihood: -63742.391460 EM: Round [121] log likelihood: -63742.391269 EM: Round [122] log likelihood: -63742.391082 EM: Round [123] log likelihood: -63742.390898 EM: Round [124] log likelihood: -63742.390718 EM: Round [125] log likelihood: -63742.390540 EM: Round [126] log likelihood: -63742.390367 EM: Round [127] log likelihood: -63742.390196 EM: Round [128] log likelihood: -63742.390028 EM: Round [129] log likelihood: -63742.389864 EM: Round [130] log likelihood: -63742.389702 EM: Round [131] log likelihood: -63742.389543 EM: Round [132] log likelihood: -63742.389387 EM: Round [133] log likelihood: -63742.389233 EM: Round [134] log likelihood: -63742.389082 EM: Round [135] log likelihood: -63742.388934 EM: Round [136] log likelihood: -63742.388788 EM: Round [137] log likelihood: -63742.388644 EM: Round [138] log likelihood: -63742.388503 EM: Round [139] log likelihood: -63742.388365 EM: Round [140] log likelihood: -63742.388228 EM: Round [141] log likelihood: -63742.388094 EM: Round [142] log likelihood: -63742.387962 EM: Round [143] log likelihood: -63742.387832 EM: Round [144] log likelihood: -63742.387705 EM: Round [145] log likelihood: -63742.387579 EM: Round [146] log likelihood: -63742.387455 EM: Round [147] log likelihood: -63742.387333 EM: Round [148] log likelihood: -63742.387214 EM: Round [149] log likelihood: -63742.387096 EM: Round [150] log likelihood: -63742.386980 EM: Round [151] log likelihood: -63742.386865 EM: Round [152] log likelihood: -63742.386753 EM: Round [153] log likelihood: -63742.386642 EM: Round [154] log likelihood: -63742.386533 EM: Round [155] log likelihood: -63742.386426 EM: Round [156] log likelihood: -63742.386321 EM: Round [157] log likelihood: -63742.386217 EM: Round [158] log likelihood: -63742.386114 EM: Round [159] log likelihood: -63742.386013 EM: Round [160] log likelihood: -63742.385914 EM: Stopping iterations at round 160 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 45127756 > /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir > /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir --annotate /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir -done, see /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 325, filtered: 3525) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.ChsbaIZtXF/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.ChsbaIZtXF/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [ENSG00000215302.8] WARNING, no entry stored in dbm for [ENSG00000205583.13] WARNING, no entry stored in dbm for [ENSG00000241990.5] WARNING, no entry stored in dbm for [ENSG00000230649.3] WARNING, no entry stored in dbm for [ENSG00000230149.2] WARNING, no entry stored in dbm for [ENSG00000286220.1] WARNING, no entry stored in dbm for [ENSG00000229180.7] WARNING, no entry stored in dbm for [ENSG00000174407.13] WARNING, no entry stored in dbm for [ENSG00000224715.1] WARNING, no entry stored in dbm for [ENSG00000228242.6] WARNING, no entry stored in dbm for [ENSG00000282458.1] WARNING, no entry stored in dbm for [ENSG00000234769.7] WARNING, no entry stored in dbm for [ENSG00000225292.2] WARNING, no entry stored in dbm for [ENSG00000253948.2] WARNING, no entry stored in dbm for [ENSG00000251562.8] WARNING, no entry stored in dbm for [ENSG00000259775.1] WARNING, no entry stored in dbm for [ENSG00000235954.7] WARNING, no entry stored in dbm for [ENSG00000233406.5] WARNING, no entry stored in dbm for [ENSG00000242861.1] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000234911.2] WARNING, no entry stored in dbm for [ENSG00000229960.1] WARNING, no entry stored in dbm for [ENSG00000260551.1] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000233762.3] WARNING, no entry stored in dbm for [ENSG00000240846.2] WARNING, no entry stored in dbm for [ENSG00000232858.1] WARNING, no entry stored in dbm for [ENSG00000240328.1] WARNING, no entry stored in dbm for [ENSG00000239215.1] WARNING, no entry stored in dbm for [ENSG00000253704.2] WARNING, no entry stored in dbm for [ENSG00000272655.2] WARNING, no entry stored in dbm for [ENSG00000243366.3] WARNING, no entry stored in dbm for [ENSG00000241175.3] WARNING, no entry stored in dbm for [ENSG00000240606.3] WARNING, no entry stored in dbm for [ENSG00000275014.1] WARNING, no entry stored in dbm for [ENSG00000100068.14] WARNING, no entry stored in dbm for [ENSG00000224897.8] WARNING, no entry stored in dbm for [ENSG00000275131.3] WARNING, no entry stored in dbm for [ENSG00000254094.1] WARNING, no entry stored in dbm for [ENSG00000272150.5] WARNING, no entry stored in dbm for [ENSG00000243961.2] WARNING, no entry stored in dbm for [ENSG00000214428.3] WARNING, no entry stored in dbm for [ENSG00000227060.7] WARNING, no entry stored in dbm for [ENSG00000236051.7] WARNING, no entry stored in dbm for [ENSG00000233117.4] WARNING, no entry stored in dbm for [ENSG00000255052.5] WARNING, no entry stored in dbm for [ENSG00000254661.3] WARNING, no entry stored in dbm for [ENSG00000266192.3] WARNING, no entry stored in dbm for [ENSG00000224309.7] WARNING, no entry stored in dbm for [ENSG00000226287.8] WARNING, no entry stored in dbm for [ENSG00000279464.1] WARNING, no entry stored in dbm for [ENSG00000286328.1] WARNING, no entry stored in dbm for [ENSG00000224086.6] WARNING, no entry stored in dbm for [ENSG00000204241.8] WARNING, no entry stored in dbm for [ENSG00000255344.2] WARNING, no entry stored in dbm for [ENSG00000275340.1] WARNING, no entry stored in dbm for [ENSG00000220804.8] WARNING, no entry stored in dbm for [ENSG00000280136.2] WARNING, no entry stored in dbm for [ENSG00000267779.7] WARNING, no entry stored in dbm for [ENSG00000232077.2] WARNING, no entry stored in dbm for [ENSG00000235513.2] WARNING, no entry stored in dbm for [ENSG00000233930.4] WARNING, no entry stored in dbm for [ENSG00000286948.1] WARNING, no entry stored in dbm for [ENSG00000228666.1] WARNING, no entry stored in dbm for [ENSG00000254034.2] WARNING, no entry stored in dbm for [ENSG00000234222.6] WARNING, no entry stored in dbm for [ENSG00000285219.2] WARNING, no entry stored in dbm for [ENSG00000230869.1] WARNING, no entry stored in dbm for [ENSG00000187481.2] WARNING, no entry stored in dbm for [ENSG00000285700.1] WARNING, no entry stored in dbm for [ENSG00000229046.1] WARNING, no entry stored in dbm for [ENSG00000225851.1] WARNING, no entry stored in dbm for [ENSG00000181126.13] WARNING, no entry stored in dbm for [ENSG00000261764.1] WARNING, no entry stored in dbm for [ENSG00000281344.1] WARNING, no entry stored in dbm for [ENSG00000271952.2] WARNING, no entry stored in dbm for [ENSG00000225978.3] WARNING, no entry stored in dbm for [ENSG00000248587.8] WARNING, no entry stored in dbm for [ENSG00000233695.2] WARNING, no entry stored in dbm for [ENSG00000214353.8] WARNING, no entry stored in dbm for [ENSG00000230937.12] WARNING, no entry stored in dbm for [ENSG00000227288.3] WARNING, no entry stored in dbm for [ENSG00000281383.1] WARNING, no entry stored in dbm for [ENSG00000280800.1] WARNING, no entry stored in dbm for [ENSG00000281181.1] WARNING, no entry stored in dbm for [ENSG00000280614.1] WARNING, no entry stored in dbm for [ENSG00000227220.1] WARNING, no entry stored in dbm for [ENSG00000232944.1] WARNING, no entry stored in dbm for [ENSG00000228184.1] WARNING, no entry stored in dbm for [ENSG00000237870.6] WARNING, no entry stored in dbm for [ENSG00000283103.3] WARNING, no entry stored in dbm for [ENSG00000270938.1] WARNING, no entry stored in dbm for [ENSG00000264589.4] WARNING, no entry stored in dbm for [ENSG00000279954.1] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000206585.1] WARNING, no entry stored in dbm for [ENSG00000270722.1] WARNING, no entry stored in dbm for [ENSG00000273768.1] WARNING, no entry stored in dbm for [ENSG00000206737.1] WARNING, no entry stored in dbm for [ENSG00000207389.1] WARNING, no entry stored in dbm for [ENSG00000207513.1] WARNING, no entry stored in dbm for [ENSG00000206588.1] WARNING, no entry stored in dbm for [ENSG00000206596.1] WARNING, no entry stored in dbm for [ENSG00000207005.1] WARNING, no entry stored in dbm for [ENSG00000206652.1] WARNING, no entry stored in dbm for [ENSG00000257252.6] WARNING, no entry stored in dbm for [ENSG00000231188.1] WARNING, no entry stored in dbm for [ENSG00000260896.6] WARNING, no entry stored in dbm for [ENSG00000284639.1] WARNING, no entry stored in dbm for [ENSG00000248618.1] WARNING, no entry stored in dbm for [ENSG00000277878.1] WARNING, no entry stored in dbm for [ENSG00000274502.1] WARNING, no entry stored in dbm for [ENSG00000215559.8] WARNING, no entry stored in dbm for [ENSG00000226149.6] WARNING, no entry stored in dbm for [ENSG00000280281.1] WARNING, no entry stored in dbm for [ENSG00000260532.1] WARNING, no entry stored in dbm for [ENSG00000229124.7] WARNING, no entry stored in dbm for [ENSG00000287619.1] WARNING, no entry stored in dbm for [ENSG00000260081.2] WARNING, no entry stored in dbm for [ENSG00000231713.2] WARNING, no entry stored in dbm for [ENSG00000203413.3] WARNING, no entry stored in dbm for [ENSG00000240197.1] WARNING, no entry stored in dbm for [ENSG00000261499.2] WARNING, no entry stored in dbm for [ENSG00000215158.9] WARNING, no entry stored in dbm for [ENSG00000259993.1] WARNING, no entry stored in dbm for [ENSG00000261012.2] WARNING, no entry stored in dbm for [ENSG00000247193.3] WARNING, no entry stored in dbm for [ENSG00000244184.1] WARNING, no entry stored in dbm for [ENSG00000213280.2] WARNING, no entry stored in dbm for [ENSG00000267408.1] WARNING, no entry stored in dbm for [ENSG00000229212.8] WARNING, no entry stored in dbm for [ENSG00000259540.1] WARNING, no entry stored in dbm for [ENSG00000266313.2] WARNING, no entry stored in dbm for [ENSG00000272140.2] WARNING, no entry stored in dbm for [ENSG00000251079.6] WARNING, no entry stored in dbm for [ENSG00000205682.2] WARNING, no entry stored in dbm for [ENSG00000205682.2] WARNING, no entry stored in dbm for [ENSG00000286970.1] WARNING, no entry stored in dbm for [ENSG00000287381.1] WARNING, no entry stored in dbm for [ENSG00000225840.2] WARNING, no entry stored in dbm for [ENSG00000285608.1] WARNING, no entry stored in dbm for [ENSG00000224629.1] WARNING, no entry stored in dbm for [ENSG00000244398.1] WARNING, no entry stored in dbm for [ENSG00000179571.10] WARNING, no entry stored in dbm for [ENSG00000179571.10] * STAR-Fusion complete. See output: /tmp/nxf.ChsbaIZtXF/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)