AIH curated blacklist: matched 8 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 398
Pass (FILTER=PASS): 57 (14.3%)
Fail (FILTER=FAIL): 341 (85.7%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 8
All 8 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 92
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 76
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 31
confidence_below_min(low<high): 18
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 18
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 17
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 12
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 11
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 9
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 7
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 6
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 4
Breakdown by confidence:
high: 57 pass, 5 fail (total: 62)
low: 0 pass, 171 fail (total: 171)
medium: 0 pass, 165 fail (total: 165)
Arriba filter: 398 rows -> 57 PASS; wrote U118MG_FFPE_RNA_0001_B23LG7FLT4_2.arriba.fusions.filtered.tsv and U118MG_FFPE_RNA_0001_B23LG7FLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: U118MG_FFPE_RNA_0001_B23LG7FLT4_2.arriba.fusions.filter_summary.txt