Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/9b7e7b2ef1237e3e9faba4ba632e7a/A549_FFPE_01_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/418a2810d6b548dd39906b84240b8b/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/418a2810d6b548dd39906b84240b8b/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
paired = 216437
unpaired = 49342
MERGED PAIRED END READS = 216437
MATES PROCESSED = 482216
TOTAL READS = 265779
DISTINCT READS = 47468
DISTINCT COUNTS = 286
MAX COUNT = 6895
COUNTS OF 1 = 29238
MAX TERMS = 62
OBSERVED COUNTS (6896)
1 29238
2 7472
3 3107
4 1639
5 975
6 712
7 562
8 403
9 351
10 234
11 230
12 183
13 148
14 116
15 128
16 118
17 81
18 90
19 59
20 73
21 68
22 75
23 57
24 61
25 60
26 49
27 38
28 43
29 38
30 39
31 34
32 34
33 35
34 26
35 23
36 30
37 26
38 24
39 25
40 17
41 14
42 11
43 21
44 14
45 18
46 12
47 11
48 14
49 15
50 8
51 8
52 8
53 12
54 12
55 13
56 5
57 11
58 4
59 10
60 6
61 10
62 13
63 9
65 18
66 8
67 10
68 6
69 5
70 8
71 7
72 6
73 5
74 7
75 9
76 6
77 4
78 2
79 2
80 6
81 4
82 4
83 4
84 8
85 6
86 5
87 3
88 6
89 6
90 2
91 5
92 4
93 4
94 4
95 5
96 3
97 2
98 3
99 9
100 3
101 4
102 3
103 4
104 1
105 3
106 3
107 3
108 2
110 1
111 2
112 2
113 5
114 2
115 2
116 3
117 3
118 3
120 2
121 1
122 3
124 3
125 3
126 2
127 1
129 3
130 1
131 2
132 1
133 2
134 3
136 3
137 2
139 3
140 2
141 2
142 1
143 2
144 2
145 3
146 2
147 1
149 3
150 1
151 3
153 1
154 2
156 2
157 1
161 2
164 4
165 2
166 3
167 3
168 2
169 1
170 2
171 2
174 4
177 1
178 1
179 1
182 1
186 2
188 1
191 4
192 3
193 1
194 1
196 1
199 3
202 1
204 2
205 1
207 1
209 2
212 2
213 1
219 2
221 1
223 1
225 1
226 3
233 2
238 1
241 2
244 1
245 1
252 1
253 1
254 1
256 1
261 1
266 1
269 2
272 1
273 1
278 1
283 1
287 2
289 3
290 1
294 1
307 2
311 1
315 2
318 1
320 1
321 1
326 1
333 1
340 2
343 1
345 1
347 1
348 1
350 1
352 1
355 1
358 1
363 1
368 1
370 1
372 1
374 1
378 2
384 2
391 1
401 1
403 1
411 1
415 1
417 1
419 1
432 1
437 1
439 1
442 1
452 1
454 1
466 1
481 1
485 2
486 1
495 1
509 1
524 1
531 1
539 1
556 1
562 1
597 1
631 1
638 1
644 1
660 1
665 1
700 1
709 1
715 1
716 1
729 1
730 1
756 1
812 1
816 1
874 1
891 1
960 1
1011 1
1014 1
1055 1
1064 1
1321 1
1335 1
1423 1
1453 1
1528 1
1733 1
1785 1
2250 1
2764 1
3161 1
3554 1
3629 1
4949 1
5312 1
6895 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................................................................
............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]