Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/a4c983d4f3928d425374c38a64b6c3/786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/f789d11d3dfd58975ba1c1dd754edc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/04a01ac1ea92e235c2217fd991d8ae/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/242750b9c7cf8cac1daa5d5ebe2b8c/786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/04a01ac1ea92e235c2217fd991d8ae/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (15910131) splicing reads. 251517 splicing junctions. 170713 known splicing junctions. 80804 novel splicing junctions.
sampling 10% (31820263) splicing reads. 314941 splicing junctions. 183360 known splicing junctions. 131581 novel splicing junctions.
sampling 15% (47730394) splicing reads. 361951 splicing junctions. 190481 known splicing junctions. 171470 novel splicing junctions.
sampling 20% (63640526) splicing reads. 400056 splicing junctions. 195294 known splicing junctions. 204762 novel splicing junctions.
sampling 25% (79550657) splicing reads. 431687 splicing junctions. 198962 known splicing junctions. 232725 novel splicing junctions.
sampling 30% (95460789) splicing reads. 459280 splicing junctions. 201830 known splicing junctions. 257450 novel splicing junctions.
sampling 35% (111370920) splicing reads. 483432 splicing junctions. 204118 known splicing junctions. 279314 novel splicing junctions.
sampling 40% (127281052) splicing reads. 504556 splicing junctions. 205968 known splicing junctions. 298588 novel splicing junctions.
sampling 45% (143191183) splicing reads. 523353 splicing junctions. 207585 known splicing junctions. 315768 novel splicing junctions.
sampling 50% (159101315) splicing reads. 540100 splicing junctions. 208923 known splicing junctions. 331177 novel splicing junctions.
sampling 55% (175011446) splicing reads. 554982 splicing junctions. 210092 known splicing junctions. 344890 novel splicing junctions.
sampling 60% (190921578) splicing reads. 568101 splicing junctions. 211125 known splicing junctions. 356976 novel splicing junctions.
sampling 65% (206831709) splicing reads. 579879 splicing junctions. 211942 known splicing junctions. 367937 novel splicing junctions.
sampling 70% (222741841) splicing reads. 590509 splicing junctions. 212716 known splicing junctions. 377793 novel splicing junctions.
sampling 75% (238651972) splicing reads. 599754 splicing junctions. 213316 known splicing junctions. 386438 novel splicing junctions.
sampling 80% (254562104) splicing reads. 607972 splicing junctions. 213879 known splicing junctions. 394093 novel splicing junctions.
sampling 85% (270472235) splicing reads. 614868 splicing junctions. 214329 known splicing junctions. 400539 novel splicing junctions.
sampling 90% (286382367) splicing reads. 620976 splicing junctions. 214723 known splicing junctions. 406253 novel splicing junctions.
sampling 95% (302292498) splicing reads. 626228 splicing junctions. 215076 known splicing junctions. 411152 novel splicing junctions.
sampling 100% (318202630) splicing reads. 630276 splicing junctions. 215316 known splicing junctions. 414960 novel splicing junctions.
null device 
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