-ctat genome lib [/tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.aD9ZHTmUtE/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary
-sample contains 13685877 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir  -J /tmp/nxf.aD9ZHTmUtE/EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction  -O /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.aD9ZHTmUtE/EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=85714.29/min 
[20000], rate=92307.69/min 
[30000], rate=75000.00/min 
[40000], rate=54545.45/min 
[50000], rate=52631.58/min 
[60000], rate=50704.23/min 
[70000], rate=45161.29/min 
[80000], rate=44444.44/min 
[90000], rate=44262.30/min 
[100000], rate=40000.00/min 
[110000], rate=37078.65/min 
[120000], rate=36180.90/min 
[130000], rate=36111.11/min 
[140000], rate=36681.22/min 
[150000], rate=37037.04/min 
[160000], rate=36090.23/min 
[170000], rate=34931.51/min 
[180000], rate=34951.46/min 
[190000], rate=35076.92/min 
[200000], rate=34883.72/min 
[210000], rate=34903.05/min 
[220000], rate=35483.87/min 
[230000], rate=36031.33/min 
[240000], rate=36180.90/min 
[250000], rate=36407.77/min 
[260000], rate=36448.60/min 
[270000], rate=36486.49/min 
[280000], rate=36206.90/min 
[290000], rate=35510.20/min 
[300000], rate=35714.29/min 
[310000], rate=35769.23/min 
[320000], rate=35887.85/min 
[330000], rate=36531.37/min 
[340000], rate=37294.33/min 
[350000], rate=37366.55/min 
[360000], rate=37828.37/min 
[370000], rate=38209.98/min 
[380000], rate=38578.68/min 
[390000], rate=39130.43/min 
[400000], rate=39735.10/min -building interval tree based on /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=24000.00/min 
[20000], rate=24489.80/min 
[30000], rate=27692.31/min 
[40000], rate=27586.21/min 
[50000], rate=29126.21/min 
[60000], rate=29752.07/min 
[70000], rate=30434.78/min 
[80000], rate=32432.43/min 
[90000], rate=33540.37/min 
[100000], rate=34482.76/min 
[110000], rate=35869.57/min 
[120000], rate=36180.90/min 
[130000], rate=37681.16/min 
[140000], rate=38009.05/min 
[150000], rate=38297.87/min 
[160000], rate=38247.01/min 
[170000], rate=37362.64/min 
[180000], rate=36486.49/min 
[190000], rate=37377.05/min 
[200000], rate=38216.56/min 
[210000], rate=39252.34/min 
[220000], rate=39759.04/min 
[230000], rate=40350.88/min 
[240000], rate=40677.97/min 
[250000], rate=40871.93/min 
[260000], rate=41379.31/min 
[270000], rate=41752.58/min 
[280000], rate=41379.31/min 
[290000], rate=41330.17/min 
[300000], rate=40909.09/min 
[310000], rate=39574.47/min 
[320000], rate=38554.22/min 
[330000], rate=38372.09/min 
[340000], rate=38636.36/min 
[350000], rate=38391.22/min 
[360000], rate=38502.67/min 
[370000], rate=38879.16/min 
[380000], rate=38907.85/min 
[390000], rate=39130.43/min 
[400000], rate=39279.87/min -building interval tree based on /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=33333.33/min 
[20000], rate=41379.31/min 
[30000], rate=45000.00/min 
[40000], rate=48979.59/min 
[50000], rate=50847.46/min 
[60000], rate=53731.34/min 
[70000], rate=53164.56/min 
[80000], rate=48484.85/min 
[90000], rate=46153.85/min 
[100000], rate=47244.09/min 
[110000], rate=45833.33/min 
[120000], rate=43636.36/min 
[130000], rate=42857.14/min 
[140000], rate=43076.92/min 
[150000], rate=44334.98/min 
[160000], rate=41201.72/min 
[170000], rate=40637.45/min 
[180000], rate=39130.43/min 
[190000], rate=38255.03/min 
[200000], rate=37383.18/min 
[210000], rate=37058.82/min 
[220000], rate=37183.10/min 
[230000], rate=36702.13/min 
[240000], rate=35207.82/min 
[250000], rate=34562.21/min 
[260000], rate=34589.80/min 
[270000], rate=34322.03/min 
[280000], rate=33667.33/min 
[290000], rate=33720.93/min 
[300000], rate=34026.47/min 
[310000], rate=34317.34/min 
[320000], rate=34594.59/min 
[330000], rate=34554.97/min 
[340000], rate=34517.77/min 
[350000], rate=34653.47/min 
[360000], rate=34838.71/min 
[370000], rate=35238.10/min 
[380000], rate=35736.68/min 
[390000], rate=36335.40/min 
[400000], rate=36529.68/min -building interval tree based on /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=85714.29/min 
[20000], rate=75000.00/min 
[30000], rate=90000.00/min 
[40000], rate=92307.69/min 
[50000], rate=90909.09/min 
[60000], rate=85714.29/min 
[70000], rate=87500.00/min 
[80000], rate=90566.04/min 
[90000], rate=90000.00/min 
[100000], rate=88235.29/min 
[110000], rate=86842.11/min 
[120000], rate=82758.62/min 
[130000], rate=82105.26/min 
[140000], rate=82352.94/min 
[150000], rate=69230.77/min 
[160000], rate=53932.58/min 
[170000], rate=44541.48/min 
[180000], rate=39416.06/min 
[190000], rate=36655.95/min 
[200000], rate=34985.42/min 
[210000], rate=33962.26/min 
[220000], rate=33165.83/min 
[230000], rate=33333.33/min 
[240000], rate=33333.33/min 
[250000], rate=33482.14/min 
[260000], rate=32980.97/min 
[270000], rate=32595.57/min 
[280000], rate=33005.89/min 
[290000], rate=33269.60/min 
[300000], rate=33834.59/min 
[310000], rate=34191.18/min 
[320000], rate=33333.33/min 
[330000], rate=33502.54/min 
[340000], rate=33442.62/min 
[350000], rate=33653.85/min 
[360000], rate=34123.22/min 
[370000], rate=34741.78/min 
[380000], rate=35294.12/min 
[390000], rate=35562.31/min 
[400000], rate=35928.14/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
 6000000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4000000.00 reads per min processed...  
 3750000.00 reads per min processed...  
 3600000.00 reads per min processed...  
 3818181.82 reads per min processed...  
 4000000.00 reads per min processed...  
 4153846.15 reads per min processed...  
 4285714.29 reads per min processed...  
 4400000.00 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.aD9ZHTmUtE/EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -27096.406876
EM: Round [1] log likelihood: -27056.303896
EM: Round [2] log likelihood: -27038.004018
EM: Round [3] log likelihood: -27028.240310
EM: Round [4] log likelihood: -27022.818679
EM: Round [5] log likelihood: -27019.773666
EM: Round [6] log likelihood: -27018.031971
EM: Round [7] log likelihood: -27017.005495
EM: Round [8] log likelihood: -27016.377418
EM: Round [9] log likelihood: -27015.977252
EM: Round [10] log likelihood: -27015.711855
EM: Round [11] log likelihood: -27015.529034
EM: Round [12] log likelihood: -27015.398637
EM: Round [13] log likelihood: -27015.302666
EM: Round [14] log likelihood: -27015.230027
EM: Round [15] log likelihood: -27015.173667
EM: Round [16] log likelihood: -27015.128967
EM: Round [17] log likelihood: -27015.092823
EM: Round [18] log likelihood: -27015.063095
EM: Round [19] log likelihood: -27015.038278
EM: Round [20] log likelihood: -27015.017289
EM: Round [21] log likelihood: -27014.999336
EM: Round [22] log likelihood: -27014.983828
EM: Round [23] log likelihood: -27014.970318
EM: Round [24] log likelihood: -27014.958462
EM: Round [25] log likelihood: -27014.947991
EM: Round [26] log likelihood: -27014.938694
EM: Round [27] log likelihood: -27014.930399
EM: Round [28] log likelihood: -27014.922968
EM: Round [29] log likelihood: -27014.916287
EM: Round [30] log likelihood: -27014.910263
EM: Round [31] log likelihood: -27014.904816
EM: Round [32] log likelihood: -27014.899878
EM: Round [33] log likelihood: -27014.895394
EM: Round [34] log likelihood: -27014.891313
EM: Round [35] log likelihood: -27014.887593
EM: Round [36] log likelihood: -27014.884199
EM: Round [37] log likelihood: -27014.881096
EM: Round [38] log likelihood: -27014.878256
EM: Round [39] log likelihood: -27014.875655
EM: Round [40] log likelihood: -27014.873270
EM: Round [41] log likelihood: -27014.871081
EM: Round [42] log likelihood: -27014.869071
EM: Round [43] log likelihood: -27014.867223
EM: Round [44] log likelihood: -27014.865523
EM: Round [45] log likelihood: -27014.863958
EM: Round [46] log likelihood: -27014.862517
EM: Round [47] log likelihood: -27014.861189
EM: Round [48] log likelihood: -27014.859964
EM: Round [49] log likelihood: -27014.858835
EM: Round [50] log likelihood: -27014.857792
EM: Round [51] log likelihood: -27014.856830
EM: Round [52] log likelihood: -27014.855940
EM: Round [53] log likelihood: -27014.855118
EM: Round [54] log likelihood: -27014.854359
EM: Round [55] log likelihood: -27014.853656
EM: Round [56] log likelihood: -27014.853006
EM: Round [57] log likelihood: -27014.852404
EM: Round [58] log likelihood: -27014.851847
EM: Round [59] log likelihood: -27014.851331
EM: Round [60] log likelihood: -27014.850852
EM: Round [61] log likelihood: -27014.850409
EM: Round [62] log likelihood: -27014.849998
EM: Round [63] log likelihood: -27014.849617
EM: Round [64] log likelihood: -27014.849264
EM: Round [65] log likelihood: -27014.848936
EM: Round [66] log likelihood: -27014.848632
EM: Round [67] log likelihood: -27014.848349
EM: Round [68] log likelihood: -27014.848087
EM: Round [69] log likelihood: -27014.847843
EM: Round [70] log likelihood: -27014.847616
EM: Round [71] log likelihood: -27014.847406
EM: Round [72] log likelihood: -27014.847210
EM: Round [73] log likelihood: -27014.847028
EM: Round [74] log likelihood: -27014.846858
EM: Round [75] log likelihood: -27014.846701
EM: Round [76] log likelihood: -27014.846554
EM: Round [77] log likelihood: -27014.846418
EM: Round [78] log likelihood: -27014.846291
EM: Round [79] log likelihood: -27014.846172
EM: Round [80] log likelihood: -27014.846062
EM: Round [81] log likelihood: -27014.845959
EM: Round [82] log likelihood: -27014.845863
EM: Stopping iterations at round 82 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -27088.385922
EM: Round [1] log likelihood: -27051.306744
EM: Round [2] log likelihood: -27034.902243
EM: Round [3] log likelihood: -27026.351600
EM: Round [4] log likelihood: -27021.679907
EM: Round [5] log likelihood: -27019.081357
EM: Round [6] log likelihood: -27017.601640
EM: Round [7] log likelihood: -27016.730030
EM: Round [8] log likelihood: -27016.195455
EM: Round [9] log likelihood: -27015.853322
EM: Round [10] log likelihood: -27015.625018
EM: Round [11] log likelihood: -27015.466589
EM: Round [12] log likelihood: -27015.352655
EM: Round [13] log likelihood: -27015.268058
EM: Round [14] log likelihood: -27015.203442
EM: Round [15] log likelihood: -27015.152847
EM: Round [16] log likelihood: -27015.112361
EM: Round [17] log likelihood: -27015.079347
EM: Round [18] log likelihood: -27015.051981
EM: Round [19] log likelihood: -27015.028973
EM: Round [20] log likelihood: -27015.009392
EM: Round [21] log likelihood: -27014.992552
EM: Round [22] log likelihood: -27014.977937
EM: Round [23] log likelihood: -27014.965154
EM: Round [24] log likelihood: -27014.953900
EM: Round [25] log likelihood: -27014.943933
EM: Round [26] log likelihood: -27014.935064
EM: Round [27] log likelihood: -27014.927138
EM: Round [28] log likelihood: -27014.920026
EM: Round [29] log likelihood: -27014.913627
EM: Round [30] log likelihood: -27014.907850
EM: Round [31] log likelihood: -27014.902623
EM: Round [32] log likelihood: -27014.897883
EM: Round [33] log likelihood: -27014.893576
EM: Round [34] log likelihood: -27014.889656
EM: Round [35] log likelihood: -27014.886081
EM: Round [36] log likelihood: -27014.882818
EM: Round [37] log likelihood: -27014.879835
EM: Round [38] log likelihood: -27014.877105
EM: Round [39] log likelihood: -27014.874603
EM: Round [40] log likelihood: -27014.872309
EM: Round [41] log likelihood: -27014.870203
EM: Round [42] log likelihood: -27014.868268
EM: Round [43] log likelihood: -27014.866489
EM: Round [44] log likelihood: -27014.864852
EM: Round [45] log likelihood: -27014.863346
EM: Round [46] log likelihood: -27014.861957
EM: Round [47] log likelihood: -27014.860678
EM: Round [48] log likelihood: -27014.859498
EM: Round [49] log likelihood: -27014.858408
EM: Round [50] log likelihood: -27014.857403
EM: Round [51] log likelihood: -27014.856474
EM: Round [52] log likelihood: -27014.855616
EM: Round [53] log likelihood: -27014.854822
EM: Round [54] log likelihood: -27014.854088
EM: Round [55] log likelihood: -27014.853409
EM: Round [56] log likelihood: -27014.852780
EM: Round [57] log likelihood: -27014.852198
EM: Round [58] log likelihood: -27014.851659
EM: Round [59] log likelihood: -27014.851160
EM: Round [60] log likelihood: -27014.850697
EM: Round [61] log likelihood: -27014.850267
EM: Round [62] log likelihood: -27014.849869
EM: Round [63] log likelihood: -27014.849499
EM: Round [64] log likelihood: -27014.849156
EM: Round [65] log likelihood: -27014.848838
EM: Round [66] log likelihood: -27014.848542
EM: Round [67] log likelihood: -27014.848267
EM: Round [68] log likelihood: -27014.848012
EM: Round [69] log likelihood: -27014.847775
EM: Round [70] log likelihood: -27014.847554
EM: Round [71] log likelihood: -27014.847349
EM: Round [72] log likelihood: -27014.847159
EM: Round [73] log likelihood: -27014.846981
EM: Round [74] log likelihood: -27014.846816
EM: Round [75] log likelihood: -27014.846662
EM: Round [76] log likelihood: -27014.846519
EM: Round [77] log likelihood: -27014.846386
EM: Round [78] log likelihood: -27014.846261
EM: Round [79] log likelihood: -27014.846146
EM: Round [80] log likelihood: -27014.846038
EM: Round [81] log likelihood: -27014.845937
EM: Round [82] log likelihood: -27014.845844
EM: Stopping iterations at round 82 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 13685877 > /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir > /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir --annotate /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir
-done, see /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 223, filtered: 2590)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.aD9ZHTmUtE/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.aD9ZHTmUtE/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000241469.9]
WARNING, no entry stored in dbm for [ENSG00000267296.2]
WARNING, no entry stored in dbm for [ENSG00000261423.1]
WARNING, no entry stored in dbm for [ENSG00000222976.1]
WARNING, no entry stored in dbm for [ENSG00000228862.4]
WARNING, no entry stored in dbm for [ENSG00000241316.8]
WARNING, no entry stored in dbm for [ENSG00000275549.1]
WARNING, no entry stored in dbm for [ENSG00000285987.1]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000276721.1]
WARNING, no entry stored in dbm for [ENSG00000182776.4]
WARNING, no entry stored in dbm for [ENSG00000248727.6]
WARNING, no entry stored in dbm for [ENSG00000227210.2]
WARNING, no entry stored in dbm for [ENSG00000279583.1]
WARNING, no entry stored in dbm for [ENSG00000224081.9]
WARNING, no entry stored in dbm for [ENSG00000204044.6]
WARNING, no entry stored in dbm for [ENSG00000245958.6]
WARNING, no entry stored in dbm for [ENSG00000185986.12]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000225482.1]
WARNING, no entry stored in dbm for [ENSG00000216866.5]
WARNING, no entry stored in dbm for [ENSG00000262943.7]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000218018.3]
WARNING, no entry stored in dbm for [ENSG00000213300.5]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000259275.4]
WARNING, no entry stored in dbm for [ENSG00000270231.4]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000286176.2]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000186715.11]
WARNING, no entry stored in dbm for [ENSG00000234474.3]
WARNING, no entry stored in dbm for [ENSG00000260738.1]
WARNING, no entry stored in dbm for [ENSG00000236432.8]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000241288.8]
WARNING, no entry stored in dbm for [ENSG00000229723.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000256721.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000227733.10]
WARNING, no entry stored in dbm for [ENSG00000243753.5]
WARNING, no entry stored in dbm for [ENSG00000181126.13]
WARNING, no entry stored in dbm for [ENSG00000233672.9]
WARNING, no entry stored in dbm for [ENSG00000281383.1]
WARNING, no entry stored in dbm for [ENSG00000262831.1]
WARNING, no entry stored in dbm for [ENSG00000280800.1]
WARNING, no entry stored in dbm for [ENSG00000262831.1]
WARNING, no entry stored in dbm for [ENSG00000281181.1]
WARNING, no entry stored in dbm for [ENSG00000262831.1]
WARNING, no entry stored in dbm for [ENSG00000280614.1]
WARNING, no entry stored in dbm for [ENSG00000262831.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000227627.3]
WARNING, no entry stored in dbm for [ENSG00000280997.1]
WARNING, no entry stored in dbm for [ENSG00000277287.1]
WARNING, no entry stored in dbm for [ENSG00000221953.5]
WARNING, no entry stored in dbm for [ENSG00000227195.11]
WARNING, no entry stored in dbm for [ENSG00000226548.1]
WARNING, no entry stored in dbm for [ENSG00000287400.1]
WARNING, no entry stored in dbm for [ENSG00000213871.3]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000230912.1]
WARNING, no entry stored in dbm for [ENSG00000203690.13]
WARNING, no entry stored in dbm for [ENSG00000279211.1]
WARNING, no entry stored in dbm for [ENSG00000255991.2]
WARNING, no entry stored in dbm for [ENSG00000213979.3]
WARNING, no entry stored in dbm for [ENSG00000250159.7]
WARNING, no entry stored in dbm for [ENSG00000224479.6]
WARNING, no entry stored in dbm for [ENSG00000254035.1]
WARNING, no entry stored in dbm for [ENSG00000247193.3]
WARNING, no entry stored in dbm for [ENSG00000260236.1]
WARNING, no entry stored in dbm for [ENSG00000230733.2]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000259772.6]
WARNING, no entry stored in dbm for [ENSG00000270804.1]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]


	* STAR-Fusion complete.  See output: /tmp/nxf.aD9ZHTmUtE/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)