File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/e6473812d82a7061e14df68b020c03/.command.log
Size
1.2 KB
Task
NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA_FILTER (BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/e6473812d82a7061e14df68b020c03/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/6bd40de038a57be30c5eb4cbf1bfae/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2.arriba.fusions.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/e6473812d82a7061e14df68b020c03/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-6ef41cd9-2e18-4687-842c-3f6f49c5643f/f2/edcdb43d4676ed2a5254ed1bf31faa/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)


================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 0
Arriba filter: 0 rows -> 0 PASS; wrote BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2.arriba.fusions.filtered.tsv and BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2.arriba.fusions.filter_summary.txt