/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory May 28, 2026 10:28:57 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Thu May 28 22:28:57 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT A673_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT A673_FFPE_RNA_0001_B23LG7FLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Thu May 28 22:28:57 GMT 2026] Executing as ?@nf-4041f58cef41aa56181853c9d57e68c8-7cc6f-vb5bf on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 WARNING: BAM index file /tmp/nxf.XXXXJpRgC8/A673_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXJpRgC8/A673_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam INFO 2026-05-28 22:29:00 CollectRnaSeqMetrics Loaded 58279 genes. INFO 2026-05-28 22:29:17 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 16s. Last read position: chr1:1,293,658 INFO 2026-05-28 22:29:37 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 20s. Last read position: chr1:1,798,582 INFO 2026-05-28 22:29:51 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 13s. Last read position: chr1:6,525,976 INFO 2026-05-28 22:30:07 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 16s. Last read position: chr1:8,866,333 INFO 2026-05-28 22:30:30 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 23s. Last read position: chr1:11,054,646 INFO 2026-05-28 22:30:51 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 20s. Last read position: chr1:12,327,718 INFO 2026-05-28 22:31:07 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 15s. Last read position: chr1:16,315,219 INFO 2026-05-28 22:31:25 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 18s. Last read position: chr1:19,112,524 INFO 2026-05-28 22:31:48 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 22s. Last read position: chr1:20,770,941 INFO 2026-05-28 22:32:11 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 23s. Last read position: chr1:23,079,615 INFO 2026-05-28 22:32:28 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 17s. Last read position: chr1:24,814,185 INFO 2026-05-28 22:32:43 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 14s. Last read position: chr1:26,772,615 INFO 2026-05-28 22:32:54 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 11s. Last read position: chr1:28,334,537 INFO 2026-05-28 22:33:42 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 47s. Last read position: chr1:30,936,752 INFO 2026-05-28 22:34:06 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 24s. Last read position: chr1:32,334,885 INFO 2026-05-28 22:34:24 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 18s. Last read position: chr1:35,190,841 INFO 2026-05-28 22:34:40 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 16s. Last read position: chr1:35,973,467 INFO 2026-05-28 22:34:51 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 10s. Last read position: chr1:38,019,100 INFO 2026-05-28 22:36:18 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 86s. Last read position: chr1:40,069,698 INFO 2026-05-28 22:36:37 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 19s. Last read position: chr1:42,930,822 INFO 2026-05-28 22:37:08 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 30s. Last read position: chr1:44,412,364 INFO 2026-05-28 22:37:33 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 24s. Last read position: chr1:46,030,147 INFO 2026-05-28 22:37:57 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 23s. Last read position: chr1:51,790,560 INFO 2026-05-28 22:38:52 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 54s. Last read position: chr1:51,878,411 INFO 2026-05-28 22:39:15 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 22s. Last read position: chr1:55,103,876 INFO 2026-05-28 22:39:34 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 18s. Last read position: chr1:62,552,740 INFO 2026-05-28 22:40:18 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 44s. Last read position: chr1:67,430,019 INFO 2026-05-28 22:40:47 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 28s. Last read position: chr1:77,956,483 INFO 2026-05-28 22:41:00 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 13s. Last read position: chr1:90,717,044 INFO 2026-05-28 22:41:20 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 20s. Last read position: chr1:100,058,702 INFO 2026-05-28 22:41:40 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 20s. Last read position: chr1:109,280,843 INFO 2026-05-28 22:42:15 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 34s. Last read position: chr1:110,603,655 INFO 2026-05-28 22:42:36 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 20s. Last read position: chr1:113,981,367 INFO 2026-05-28 22:42:56 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 20s. Last read position: chr1:116,388,636 INFO 2026-05-28 22:43:31 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 34s. Last read position: chr1:119,735,302 INFO 2026-05-28 22:43:56 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 25s. Last read position: chr1:143,680,361 INFO 2026-05-28 22:44:06 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 9s. Last read position: chr1:146,376,834 INFO 2026-05-28 22:44:20 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 13s. Last read position: chr1:149,488,121 INFO 2026-05-28 22:44:22 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr1:149,860,852 INFO 2026-05-28 22:44:35 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 12s. Last read position: chr1:150,579,226 INFO 2026-05-28 22:44:55 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 20s. Last read position: chr1:151,406,226 INFO 2026-05-28 22:45:12 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 17s. Last read position: chr1:153,665,255 INFO 2026-05-28 22:45:31 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 18s. Last read position: chr1:154,172,260 INFO 2026-05-28 22:46:18 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 47s. Last read position: chr1:154,961,006 INFO 2026-05-28 22:46:35 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 16s. Last read position: chr1:155,415,807 INFO 2026-05-28 22:47:08 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 33s. Last read position: chr1:156,076,904 INFO 2026-05-28 22:47:28 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 19s. Last read position: chr1:156,767,864 INFO 2026-05-28 22:47:44 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 16s. Last read position: chr1:161,042,122 INFO 2026-05-28 22:48:12 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 27s. Last read position: chr1:165,651,027 INFO 2026-05-28 22:48:27 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 14s. Last read position: chr1:171,571,349 INFO 2026-05-28 22:48:42 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 15s. Last read position: chr1:180,014,276 INFO 2026-05-28 22:48:53 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 10s. Last read position: chr1:183,900,146 INFO 2026-05-28 22:49:02 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 8s. Last read position: chr1:186,023,054 INFO 2026-05-28 22:49:19 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 17s. Last read position: chr1:186,325,808 INFO 2026-05-28 22:49:33 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 14s. Last read position: chr1:193,152,381 INFO 2026-05-28 22:49:46 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 13s. Last read position: chr1:201,317,668 INFO 2026-05-28 22:49:59 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 13s. Last read position: chr1:202,746,207 INFO 2026-05-28 22:50:17 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 17s. Last read position: chr1:205,810,351 INFO 2026-05-28 22:50:28 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 10s. Last read position: chr1:214,401,717 INFO 2026-05-28 22:50:35 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 7s. Last read position: chr1:222,673,390 INFO 2026-05-28 22:50:47 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 11s. Last read position: chr1:226,064,404 INFO 2026-05-28 22:51:30 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 42s. Last read position: chr1:228,323,402 INFO 2026-05-28 22:51:44 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 14s. Last read position: chr1:235,132,404 INFO 2026-05-28 22:52:07 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 22s. Last read position: chr1:244,856,547 INFO 2026-05-28 22:52:32 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:23:31s. Time for last 1,000,000: 25s. Last read position: chr2:1,635,447 INFO 2026-05-28 22:52:42 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:23:41s. Time for last 1,000,000: 10s. Last read position: chr2:9,003,550 INFO 2026-05-28 22:52:54 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 11s. Last read position: chr2:11,447,710 INFO 2026-05-28 22:53:11 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 17s. Last read position: chr2:23,869,712 INFO 2026-05-28 22:53:27 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:24:26s. Time for last 1,000,000: 15s. Last read position: chr2:26,283,003 INFO 2026-05-28 22:53:39 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:24:38s. Time for last 1,000,000: 11s. Last read position: chr2:27,233,698 INFO 2026-05-28 22:53:54 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:24:53s. Time for last 1,000,000: 15s. Last read position: chr2:28,778,913 INFO 2026-05-28 22:54:09 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:25:08s. Time for last 1,000,000: 14s. Last read position: chr2:32,916,230 INFO 2026-05-28 22:54:14 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:25:13s. Time for last 1,000,000: 5s. Last read position: chr2:32,916,264 INFO 2026-05-28 22:54:23 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:25:22s. Time for last 1,000,000: 8s. Last read position: chr2:32,916,358 INFO 2026-05-28 22:54:24 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:25:24s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-05-28 22:54:28 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:25:27s. Time for last 1,000,000: 3s. Last read position: chr2:36,902,729 INFO 2026-05-28 22:54:39 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:25:39s. Time for last 1,000,000: 11s. Last read position: chr2:42,288,291 INFO 2026-05-28 22:54:58 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:25:57s. Time for last 1,000,000: 18s. Last read position: chr2:44,201,779 INFO 2026-05-28 22:55:13 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:26:12s. Time for last 1,000,000: 15s. Last read position: chr2:53,923,387 INFO 2026-05-28 22:56:01 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:27:00s. Time for last 1,000,000: 47s. Last read position: chr2:55,418,841 INFO 2026-05-28 22:56:40 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:27:39s. Time for last 1,000,000: 39s. Last read position: chr2:62,147,186 INFO 2026-05-28 22:56:53 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:27:52s. Time for last 1,000,000: 12s. Last read position: chr2:69,102,878 INFO 2026-05-28 22:57:22 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:28:21s. Time for last 1,000,000: 28s. Last read position: chr2:72,465,205 INFO 2026-05-28 22:57:34 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:28:34s. Time for last 1,000,000: 12s. Last read position: chr2:74,214,126 INFO 2026-05-28 22:57:49 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:28:49s. Time for last 1,000,000: 15s. Last read position: chr2:85,371,085 INFO 2026-05-28 22:58:02 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:29:01s. Time for last 1,000,000: 12s. Last read position: chr2:86,994,834 INFO 2026-05-28 22:58:10 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:29:09s. Time for last 1,000,000: 8s. Last read position: chr2:96,364,558 INFO 2026-05-28 22:58:22 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:29:21s. Time for last 1,000,000: 11s. Last read position: chr2:101,269,229 INFO 2026-05-28 22:58:36 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:29:35s. Time for last 1,000,000: 13s. Last read position: chr2:108,751,891 INFO 2026-05-28 22:58:43 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:29:42s. Time for last 1,000,000: 7s. Last read position: chr2:109,585,829 INFO 2026-05-28 22:58:48 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:29:47s. Time for last 1,000,000: 5s. Last read position: chr2:110,649,263 INFO 2026-05-28 22:58:58 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:29:57s. Time for last 1,000,000: 10s. Last read position: chr2:112,658,876 INFO 2026-05-28 22:59:12 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:30:11s. Time for last 1,000,000: 13s. Last read position: chr2:127,070,593 INFO 2026-05-28 22:59:28 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:30:27s. Time for last 1,000,000: 15s. Last read position: chr2:131,492,240 INFO 2026-05-28 22:59:43 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:30:42s. Time for last 1,000,000: 15s. Last read position: chr2:144,399,810 INFO 2026-05-28 23:00:01 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:31:01s. Time for last 1,000,000: 18s. Last read position: chr2:152,735,026 INFO 2026-05-28 23:00:26 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:31:25s. Time for last 1,000,000: 24s. Last read position: chr2:169,636,091 INFO 2026-05-28 23:00:41 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:31:40s. Time for last 1,000,000: 14s. Last read position: chr2:174,719,882 INFO 2026-05-28 23:00:54 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:31:54s. Time for last 1,000,000: 13s. Last read position: chr2:178,384,146 INFO 2026-05-28 23:01:26 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:32:25s. Time for last 1,000,000: 31s. Last read position: chr2:189,458,635 INFO 2026-05-28 23:01:44 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:32:43s. Time for last 1,000,000: 18s. Last read position: chr2:197,487,170 INFO 2026-05-28 23:02:20 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:33:19s. Time for last 1,000,000: 35s. Last read position: chr2:202,265,857 INFO 2026-05-28 23:02:33 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:33:32s. Time for last 1,000,000: 13s. Last read position: chr2:208,243,439 INFO 2026-05-28 23:02:49 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:33:48s. Time for last 1,000,000: 15s. Last read position: chr2:215,361,979 INFO 2026-05-28 23:03:17 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:34:16s. Time for last 1,000,000: 28s. Last read position: chr2:215,373,343 INFO 2026-05-28 23:03:56 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:34:55s. Time for last 1,000,000: 39s. Last read position: chr2:215,381,069 INFO 2026-05-28 23:04:47 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:35:46s. Time for last 1,000,000: 50s. Last read position: chr2:215,394,686 INFO 2026-05-28 23:05:47 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:36:46s. Time for last 1,000,000: 60s. Last read position: chr2:215,409,574 INFO 2026-05-28 23:07:06 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:38:05s. Time for last 1,000,000: 78s. Last read position: chr2:215,428,267 INFO 2026-05-28 23:07:57 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:38:56s. Time for last 1,000,000: 50s. Last read position: chr2:216,633,873 INFO 2026-05-28 23:08:14 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:39:13s. Time for last 1,000,000: 17s. Last read position: chr2:218,661,117 INFO 2026-05-28 23:08:28 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:39:27s. Time for last 1,000,000: 13s. Last read position: chr2:222,232,229 INFO 2026-05-28 23:08:41 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:39:40s. Time for last 1,000,000: 12s. Last read position: chr2:229,774,142 INFO 2026-05-28 23:09:15 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:40:14s. Time for last 1,000,000: 33s. Last read position: chr2:231,459,077 INFO 2026-05-28 23:09:38 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:40:37s. Time for last 1,000,000: 22s. Last read position: chr2:235,807,239 INFO 2026-05-28 23:10:08 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:41:07s. Time for last 1,000,000: 30s. Last read position: chr2:240,740,338 INFO 2026-05-28 23:11:22 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:42:21s. Time for last 1,000,000: 73s. Last read position: chr2:241,262,901 INFO 2026-05-28 23:11:46 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:42:45s. Time for last 1,000,000: 24s. Last read position: chr3:9,474,490 INFO 2026-05-28 23:12:04 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:43:03s. Time for last 1,000,000: 18s. Last read position: chr3:12,597,430 INFO 2026-05-28 23:12:17 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:43:16s. Time for last 1,000,000: 12s. Last read position: chr3:15,738,580 INFO 2026-05-28 23:12:29 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:43:28s. Time for last 1,000,000: 12s. Last read position: chr3:31,579,939 INFO 2026-05-28 23:12:48 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:43:47s. Time for last 1,000,000: 19s. Last read position: chr3:39,407,689 INFO 2026-05-28 23:13:09 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:44:08s. Time for last 1,000,000: 20s. Last read position: chr3:47,121,684 INFO 2026-05-28 23:13:23 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:44:23s. Time for last 1,000,000: 14s. Last read position: chr3:48,609,248 INFO 2026-05-28 23:13:43 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:44:42s. Time for last 1,000,000: 19s. Last read position: chr3:49,972,137 INFO 2026-05-28 23:13:57 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:44:56s. Time for last 1,000,000: 13s. Last read position: chr3:52,634,796 INFO 2026-05-28 23:14:13 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:45:12s. Time for last 1,000,000: 16s. Last read position: chr3:68,636,346 INFO 2026-05-28 23:14:29 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:45:28s. Time for last 1,000,000: 16s. Last read position: chr3:100,025,210 INFO 2026-05-28 23:14:51 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:45:50s. Time for last 1,000,000: 21s. Last read position: chr3:111,109,820 INFO 2026-05-28 23:15:01 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:46:01s. Time for last 1,000,000: 10s. Last read position: chr3:121,698,546 INFO 2026-05-28 23:15:13 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:46:12s. Time for last 1,000,000: 11s. Last read position: chr3:127,004,608 INFO 2026-05-28 23:15:24 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:46:23s. Time for last 1,000,000: 10s. Last read position: chr3:129,171,686 INFO 2026-05-28 23:15:40 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:46:39s. Time for last 1,000,000: 16s. Last read position: chr3:134,188,845 INFO 2026-05-28 23:15:57 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:46:56s. Time for last 1,000,000: 16s. Last read position: chr3:142,333,031 INFO 2026-05-28 23:16:12 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:47:11s. Time for last 1,000,000: 14s. Last read position: chr3:150,742,543 INFO 2026-05-28 23:16:25 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:47:25s. Time for last 1,000,000: 13s. Last read position: chr3:160,433,120 INFO 2026-05-28 23:16:40 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:47:39s. Time for last 1,000,000: 14s. Last read position: chr3:179,401,299 INFO 2026-05-28 23:16:59 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:47:58s. Time for last 1,000,000: 19s. Last read position: chr3:184,177,061 INFO 2026-05-28 23:17:32 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:48:31s. Time for last 1,000,000: 32s. Last read position: chr3:185,586,478 INFO 2026-05-28 23:17:45 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:48:44s. Time for last 1,000,000: 13s. Last read position: chr3:190,604,186 INFO 2026-05-28 23:18:05 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:49:04s. Time for last 1,000,000: 20s. Last read position: chr3:196,238,612 INFO 2026-05-28 23:18:33 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:49:32s. Time for last 1,000,000: 27s. Last read position: chr4:851,818 INFO 2026-05-28 23:18:47 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:49:46s. Time for last 1,000,000: 13s. Last read position: chr4:1,731,191 INFO 2026-05-28 23:19:08 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:50:07s. Time for last 1,000,000: 20s. Last read position: chr4:2,497,058 INFO 2026-05-28 23:19:32 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:50:32s. Time for last 1,000,000: 24s. Last read position: chr4:5,753,870 INFO 2026-05-28 23:19:42 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:50:41s. Time for last 1,000,000: 9s. Last read position: chr4:13,603,586 INFO 2026-05-28 23:19:55 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:50:54s. Time for last 1,000,000: 13s. Last read position: chr4:22,727,499 INFO 2026-05-28 23:20:05 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:51:04s. Time for last 1,000,000: 9s. Last read position: chr4:39,221,305 INFO 2026-05-28 23:20:17 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:51:16s. Time for last 1,000,000: 12s. Last read position: chr4:44,717,174 INFO 2026-05-28 23:20:31 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:51:30s. Time for last 1,000,000: 14s. Last read position: chr4:70,825,351 INFO 2026-05-28 23:20:48 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:51:47s. Time for last 1,000,000: 17s. Last read position: chr4:82,856,991 INFO 2026-05-28 23:21:17 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:52:16s. Time for last 1,000,000: 28s. Last read position: chr4:94,250,770 INFO 2026-05-28 23:21:33 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:52:32s. Time for last 1,000,000: 15s. Last read position: chr4:103,158,664 INFO 2026-05-28 23:21:46 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:52:45s. Time for last 1,000,000: 12s. Last read position: chr4:109,818,013 INFO 2026-05-28 23:22:12 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:53:11s. Time for last 1,000,000: 26s. Last read position: chr4:122,254,808 INFO 2026-05-28 23:22:25 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:53:24s. Time for last 1,000,000: 12s. Last read position: chr4:133,152,340 INFO 2026-05-28 23:22:33 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:53:32s. Time for last 1,000,000: 8s. Last read position: chr4:145,138,582 INFO 2026-05-28 23:23:06 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:54:05s. Time for last 1,000,000: 32s. Last read position: chr4:156,949,956 INFO 2026-05-28 23:23:16 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:54:15s. Time for last 1,000,000: 9s. Last read position: chr4:177,341,514 INFO 2026-05-28 23:23:27 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:54:26s. Time for last 1,000,000: 11s. Last read position: chr5:447,545 INFO 2026-05-28 23:23:37 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:54:36s. Time for last 1,000,000: 10s. Last read position: chr5:10,254,677 INFO 2026-05-28 23:24:04 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:55:03s. Time for last 1,000,000: 26s. Last read position: chr5:14,498,215 INFO 2026-05-28 23:24:20 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:55:19s. Time for last 1,000,000: 16s. Last read position: chr5:21,354,758 INFO 2026-05-28 23:24:32 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:55:31s. Time for last 1,000,000: 11s. Last read position: chr5:36,039,511 INFO 2026-05-28 23:24:48 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:55:47s. Time for last 1,000,000: 16s. Last read position: chr5:38,482,180 INFO 2026-05-28 23:24:59 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:55:58s. Time for last 1,000,000: 10s. Last read position: chr5:54,518,955 INFO 2026-05-28 23:25:14 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:56:13s. Time for last 1,000,000: 14s. Last read position: chr5:64,977,157 INFO 2026-05-28 23:25:26 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:56:25s. Time for last 1,000,000: 12s. Last read position: chr5:70,067,081 INFO 2026-05-28 23:25:33 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:56:32s. Time for last 1,000,000: 6s. Last read position: chr5:71,560,211 INFO 2026-05-28 23:25:46 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:56:45s. Time for last 1,000,000: 12s. Last read position: chr5:75,355,179 INFO 2026-05-28 23:26:01 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:57:00s. Time for last 1,000,000: 15s. Last read position: chr5:82,275,153 INFO 2026-05-28 23:26:16 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:57:16s. Time for last 1,000,000: 15s. Last read position: chr5:98,876,399 INFO 2026-05-28 23:26:29 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:57:28s. Time for last 1,000,000: 12s. Last read position: chr5:116,051,991 INFO 2026-05-28 23:26:49 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:57:48s. Time for last 1,000,000: 20s. Last read position: chr5:131,719,317 INFO 2026-05-28 23:27:00 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:57:59s. Time for last 1,000,000: 10s. Last read position: chr5:134,784,420 INFO 2026-05-28 23:27:11 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:58:10s. Time for last 1,000,000: 11s. Last read position: chr5:138,518,732 INFO 2026-05-28 23:27:36 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:58:35s. Time for last 1,000,000: 25s. Last read position: chr5:140,506,931 INFO 2026-05-28 23:27:47 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:58:46s. Time for last 1,000,000: 10s. Last read position: chr5:140,876,785 INFO 2026-05-28 23:27:51 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:58:50s. Time for last 1,000,000: 4s. Last read position: chr5:141,224,881 INFO 2026-05-28 23:27:57 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:58:56s. Time for last 1,000,000: 5s. Last read position: chr5:141,495,162 INFO 2026-05-28 23:28:25 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:59:24s. Time for last 1,000,000: 28s. Last read position: chr5:146,470,671 INFO 2026-05-28 23:28:43 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:59:42s. Time for last 1,000,000: 17s. Last read position: chr5:150,444,281 INFO 2026-05-28 23:29:05 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 01:00:04s. Time for last 1,000,000: 22s. Last read position: chr5:154,815,381 INFO 2026-05-28 23:29:16 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 01:00:15s. Time for last 1,000,000: 10s. Last read position: chr5:168,199,822 INFO 2026-05-28 23:29:38 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 01:00:38s. Time for last 1,000,000: 22s. Last read position: chr5:171,391,764 INFO 2026-05-28 23:30:18 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 01:01:17s. Time for last 1,000,000: 39s. Last read position: chr5:172,840,676 INFO 2026-05-28 23:30:29 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 01:01:28s. Time for last 1,000,000: 10s. Last read position: chr5:177,307,374 INFO 2026-05-28 23:30:41 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 01:01:40s. Time for last 1,000,000: 11s. Last read position: chr5:178,210,162 INFO 2026-05-28 23:31:09 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 01:02:08s. Time for last 1,000,000: 27s. Last read position: chr5:179,869,814 INFO 2026-05-28 23:31:23 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 01:02:22s. Time for last 1,000,000: 14s. Last read position: chr6:3,154,401 INFO 2026-05-28 23:31:32 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 01:02:31s. Time for last 1,000,000: 9s. Last read position: chr6:7,231,603 INFO 2026-05-28 23:31:42 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 01:02:41s. Time for last 1,000,000: 9s. Last read position: chr6:17,502,125 INFO 2026-05-28 23:31:49 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 01:02:48s. Time for last 1,000,000: 7s. Last read position: chr6:26,020,776 INFO 2026-05-28 23:31:52 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 01:02:51s. Time for last 1,000,000: 2s. Last read position: chr6:26,188,861 INFO 2026-05-28 23:31:54 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 01:02:53s. Time for last 1,000,000: 1s. Last read position: chr6:26,272,972 INFO 2026-05-28 23:31:56 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 01:02:55s. Time for last 1,000,000: 2s. Last read position: chr6:27,814,500 INFO 2026-05-28 23:31:58 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 01:02:57s. Time for last 1,000,000: 1s. Last read position: chr6:27,892,859 INFO 2026-05-28 23:32:07 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 01:03:06s. Time for last 1,000,000: 8s. Last read position: chr6:30,664,833 INFO 2026-05-28 23:32:20 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 01:03:19s. Time for last 1,000,000: 12s. Last read position: chr6:31,627,933 INFO 2026-05-28 23:32:40 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 01:03:39s. Time for last 1,000,000: 20s. Last read position: chr6:31,732,247 INFO 2026-05-28 23:32:51 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 01:03:51s. Time for last 1,000,000: 11s. Last read position: chr6:31,964,079 INFO 2026-05-28 23:33:06 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 01:04:05s. Time for last 1,000,000: 14s. Last read position: chr6:33,313,275 INFO 2026-05-28 23:33:19 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 01:04:18s. Time for last 1,000,000: 13s. Last read position: chr6:34,392,269 INFO 2026-05-28 23:33:28 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 01:04:27s. Time for last 1,000,000: 8s. Last read position: chr6:36,981,626 INFO 2026-05-28 23:33:36 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 01:04:35s. Time for last 1,000,000: 7s. Last read position: chr6:42,228,278 INFO 2026-05-28 23:33:49 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 01:04:48s. Time for last 1,000,000: 13s. Last read position: chr6:43,355,867 INFO 2026-05-28 23:34:04 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 01:05:03s. Time for last 1,000,000: 14s. Last read position: chr6:44,265,231 INFO 2026-05-28 23:34:12 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 01:05:11s. Time for last 1,000,000: 7s. Last read position: chr6:56,166,949 INFO 2026-05-28 23:34:40 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 01:05:39s. Time for last 1,000,000: 28s. Last read position: chr6:73,519,494 INFO 2026-05-28 23:34:53 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 01:05:53s. Time for last 1,000,000: 13s. Last read position: chr6:83,211,901 INFO 2026-05-28 23:35:05 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 01:06:04s. Time for last 1,000,000: 11s. Last read position: chr6:89,662,809 INFO 2026-05-28 23:35:21 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 01:06:20s. Time for last 1,000,000: 15s. Last read position: chr6:101,399,331 INFO 2026-05-28 23:35:34 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 01:06:33s. Time for last 1,000,000: 12s. Last read position: chr6:110,960,422 INFO 2026-05-28 23:35:46 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 01:06:45s. Time for last 1,000,000: 12s. Last read position: chr6:122,432,118 INFO 2026-05-28 23:36:05 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 01:07:04s. Time for last 1,000,000: 18s. Last read position: chr6:132,771,067 INFO 2026-05-28 23:36:23 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 01:07:22s. Time for last 1,000,000: 18s. Last read position: chr6:142,198,584 INFO 2026-05-28 23:36:34 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 01:07:33s. Time for last 1,000,000: 10s. Last read position: chr6:151,351,295 INFO 2026-05-28 23:36:54 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 01:07:53s. Time for last 1,000,000: 19s. Last read position: chr6:158,767,034 INFO 2026-05-28 23:37:06 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 01:08:05s. Time for last 1,000,000: 12s. Last read position: chr6:161,165,639 INFO 2026-05-28 23:37:23 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 01:08:22s. Time for last 1,000,000: 17s. Last read position: chr7:193,389 INFO 2026-05-28 23:37:37 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 01:08:36s. Time for last 1,000,000: 13s. Last read position: chr7:2,380,504 INFO 2026-05-28 23:37:47 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 01:08:46s. Time for last 1,000,000: 10s. Last read position: chr7:5,359,510 INFO 2026-05-28 23:38:02 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 01:09:01s. Time for last 1,000,000: 14s. Last read position: chr7:5,529,544 INFO 2026-05-28 23:38:11 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 01:09:10s. Time for last 1,000,000: 8s. Last read position: chr7:6,805,044 INFO 2026-05-28 23:38:24 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 01:09:23s. Time for last 1,000,000: 13s. Last read position: chr7:23,342,180 INFO 2026-05-28 23:39:01 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 01:10:00s. Time for last 1,000,000: 37s. Last read position: chr7:30,382,551 INFO 2026-05-28 23:39:26 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 01:10:25s. Time for last 1,000,000: 25s. Last read position: chr7:40,078,753 INFO 2026-05-28 23:39:38 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 01:10:37s. Time for last 1,000,000: 11s. Last read position: chr7:44,675,162 INFO 2026-05-28 23:39:53 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 01:10:52s. Time for last 1,000,000: 14s. Last read position: chr7:56,079,792 INFO 2026-05-28 23:40:02 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 01:11:01s. Time for last 1,000,000: 9s. Last read position: chr7:73,077,512 INFO 2026-05-28 23:40:13 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 01:11:12s. Time for last 1,000,000: 10s. Last read position: chr7:74,243,146 INFO 2026-05-28 23:40:22 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 01:11:21s. Time for last 1,000,000: 8s. Last read position: chr7:75,425,142 INFO 2026-05-28 23:40:30 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 01:11:29s. Time for last 1,000,000: 8s. Last read position: chr7:77,840,277 INFO 2026-05-28 23:40:48 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 01:11:47s. Time for last 1,000,000: 17s. Last read position: chr7:92,002,423 INFO 2026-05-28 23:41:59 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 01:12:59s. Time for last 1,000,000: 71s. Last read position: chr7:94,663,580 INFO 2026-05-28 23:42:12 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 01:13:11s. Time for last 1,000,000: 12s. Last read position: chr7:98,953,313 INFO 2026-05-28 23:42:30 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 01:13:30s. Time for last 1,000,000: 18s. Last read position: chr7:100,106,333 INFO 2026-05-28 23:42:43 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 01:13:42s. Time for last 1,000,000: 12s. Last read position: chr7:100,867,498 INFO 2026-05-28 23:42:55 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 01:13:55s. Time for last 1,000,000: 12s. Last read position: chr7:103,277,754 INFO 2026-05-28 23:43:18 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 01:14:17s. Time for last 1,000,000: 22s. Last read position: chr7:107,960,466 INFO 2026-05-28 23:43:40 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 01:14:39s. Time for last 1,000,000: 22s. Last read position: chr7:122,304,028 INFO 2026-05-28 23:43:54 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 01:14:53s. Time for last 1,000,000: 13s. Last read position: chr7:128,074,666 INFO 2026-05-28 23:44:05 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 01:15:04s. Time for last 1,000,000: 11s. Last read position: chr7:130,203,802 INFO 2026-05-28 23:44:16 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 01:15:15s. Time for last 1,000,000: 11s. Last read position: chr7:138,504,337 INFO 2026-05-28 23:44:33 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 01:15:33s. Time for last 1,000,000: 17s. Last read position: chr7:141,652,815 INFO 2026-05-28 23:44:46 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 01:15:45s. Time for last 1,000,000: 12s. Last read position: chr7:149,004,199 INFO 2026-05-28 23:44:57 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 01:15:56s. Time for last 1,000,000: 11s. Last read position: chr7:151,082,371 INFO 2026-05-28 23:45:21 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 01:16:21s. Time for last 1,000,000: 24s. Last read position: chr7:156,952,570 INFO 2026-05-28 23:45:34 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 01:16:33s. Time for last 1,000,000: 12s. Last read position: chr8:9,776,659 INFO 2026-05-28 23:45:49 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 01:16:48s. Time for last 1,000,000: 15s. Last read position: chr8:13,102,824 INFO 2026-05-28 23:46:06 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 01:17:05s. Time for last 1,000,000: 16s. Last read position: chr8:22,176,228 INFO 2026-05-28 23:46:20 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 01:17:19s. Time for last 1,000,000: 14s. Last read position: chr8:23,288,534 INFO 2026-05-28 23:46:30 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 01:17:29s. Time for last 1,000,000: 9s. Last read position: chr8:26,653,380 INFO 2026-05-28 23:46:43 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 01:17:42s. Time for last 1,000,000: 13s. Last read position: chr8:33,389,192 INFO 2026-05-28 23:46:47 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 01:17:46s. Time for last 1,000,000: 4s. Last read position: chr8:37,966,062 INFO 2026-05-28 23:47:04 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 01:18:03s. Time for last 1,000,000: 16s. Last read position: chr8:38,418,291 INFO 2026-05-28 23:47:36 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 01:18:35s. Time for last 1,000,000: 32s. Last read position: chr8:42,470,244 INFO 2026-05-28 23:47:55 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 01:18:54s. Time for last 1,000,000: 18s. Last read position: chr8:47,944,010 INFO 2026-05-28 23:48:09 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 01:19:08s. Time for last 1,000,000: 14s. Last read position: chr8:56,962,272 INFO 2026-05-28 23:48:27 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 01:19:26s. Time for last 1,000,000: 17s. Last read position: chr8:69,761,762 INFO 2026-05-28 23:48:39 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 01:19:38s. Time for last 1,000,000: 12s. Last read position: chr8:80,064,550 INFO 2026-05-28 23:48:49 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 01:19:48s. Time for last 1,000,000: 10s. Last read position: chr8:100,704,362 INFO 2026-05-28 23:49:15 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 01:20:14s. Time for last 1,000,000: 25s. Last read position: chr8:123,019,240 INFO 2026-05-28 23:49:27 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 01:20:26s. Time for last 1,000,000: 11s. Last read position: chr8:127,738,631 INFO 2026-05-28 23:49:49 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 01:20:48s. Time for last 1,000,000: 22s. Last read position: chr8:140,700,938 INFO 2026-05-28 23:50:19 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 01:21:18s. Time for last 1,000,000: 30s. Last read position: chr8:143,598,908 INFO 2026-05-28 23:50:32 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 01:21:31s. Time for last 1,000,000: 12s. Last read position: chr8:143,872,188 INFO 2026-05-28 23:50:46 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 01:21:45s. Time for last 1,000,000: 14s. Last read position: chr8:144,108,682 INFO 2026-05-28 23:50:59 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 01:21:58s. Time for last 1,000,000: 12s. Last read position: chr8:144,435,899 INFO 2026-05-28 23:51:09 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 01:22:08s. Time for last 1,000,000: 10s. Last read position: chr8:144,932,268 INFO 2026-05-28 23:51:27 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 01:22:26s. Time for last 1,000,000: 18s. Last read position: chr9:9,442,165 INFO 2026-05-28 23:51:45 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 01:22:44s. Time for last 1,000,000: 17s. Last read position: chr9:21,816,718 INFO 2026-05-28 23:51:54 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 01:22:53s. Time for last 1,000,000: 8s. Last read position: chr9:34,371,383 INFO 2026-05-28 23:52:16 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:23:15s. Time for last 1,000,000: 21s. Last read position: chr9:35,660,847 INFO 2026-05-28 23:52:26 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:23:25s. Time for last 1,000,000: 10s. Last read position: chr9:37,776,318 INFO 2026-05-28 23:52:38 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:23:37s. Time for last 1,000,000: 11s. Last read position: chr9:78,300,624 INFO 2026-05-28 23:52:50 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:23:49s. Time for last 1,000,000: 11s. Last read position: chr9:87,641,975 INFO 2026-05-28 23:53:13 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:24:12s. Time for last 1,000,000: 23s. Last read position: chr9:92,247,408 INFO 2026-05-28 23:53:29 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:24:28s. Time for last 1,000,000: 15s. Last read position: chr9:95,978,117 INFO 2026-05-28 23:53:36 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:24:35s. Time for last 1,000,000: 7s. Last read position: chr9:106,926,536 INFO 2026-05-28 23:53:57 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:24:56s. Time for last 1,000,000: 20s. Last read position: chr9:113,199,931 INFO 2026-05-28 23:54:10 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:25:09s. Time for last 1,000,000: 12s. Last read position: chr9:120,407,012 INFO 2026-05-28 23:54:26 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:25:25s. Time for last 1,000,000: 16s. Last read position: chr9:123,104,658 INFO 2026-05-28 23:54:42 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:25:41s. Time for last 1,000,000: 15s. Last read position: chr9:127,788,020 INFO 2026-05-28 23:55:01 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:26:00s. Time for last 1,000,000: 19s. Last read position: chr9:128,588,886 INFO 2026-05-28 23:55:18 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:26:17s. Time for last 1,000,000: 17s. Last read position: chr9:129,042,319 INFO 2026-05-28 23:55:29 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:26:28s. Time for last 1,000,000: 10s. Last read position: chr9:130,878,545 INFO 2026-05-28 23:55:42 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:26:41s. Time for last 1,000,000: 13s. Last read position: chr9:132,014,426 INFO 2026-05-28 23:55:53 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:26:52s. Time for last 1,000,000: 10s. Last read position: chr9:134,034,809 INFO 2026-05-28 23:56:01 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:27:00s. Time for last 1,000,000: 8s. Last read position: chr9:136,209,109 INFO 2026-05-28 23:56:19 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:27:18s. Time for last 1,000,000: 18s. Last read position: chr9:136,671,979 INFO 2026-05-28 23:56:33 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:27:33s. Time for last 1,000,000: 14s. Last read position: chr9:137,199,144 INFO 2026-05-28 23:56:47 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:27:46s. Time for last 1,000,000: 13s. Last read position: chr10:632,216 INFO 2026-05-28 23:57:06 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:28:05s. Time for last 1,000,000: 19s. Last read position: chr10:5,880,482 INFO 2026-05-28 23:57:16 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:28:15s. Time for last 1,000,000: 10s. Last read position: chr10:13,492,715 INFO 2026-05-28 23:57:32 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:28:31s. Time for last 1,000,000: 15s. Last read position: chr10:21,730,866 INFO 2026-05-28 23:57:50 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:28:49s. Time for last 1,000,000: 18s. Last read position: chr10:27,170,812 INFO 2026-05-28 23:58:03 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:29:02s. Time for last 1,000,000: 12s. Last read position: chr10:32,031,171 INFO 2026-05-28 23:58:21 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:29:20s. Time for last 1,000,000: 18s. Last read position: chr10:35,044,657 INFO 2026-05-28 23:58:31 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:29:30s. Time for last 1,000,000: 10s. Last read position: chr10:45,787,100 INFO 2026-05-28 23:58:39 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:29:38s. Time for last 1,000,000: 8s. Last read position: chr10:59,324,068 INFO 2026-05-28 23:58:50 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:29:49s. Time for last 1,000,000: 10s. Last read position: chr10:68,691,677 INFO 2026-05-28 23:59:06 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:30:05s. Time for last 1,000,000: 16s. Last read position: chr10:70,409,436 INFO 2026-05-28 23:59:20 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:30:19s. Time for last 1,000,000: 13s. Last read position: chr10:73,791,963 INFO 2026-05-28 23:59:38 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:30:37s. Time for last 1,000,000: 17s. Last read position: chr10:79,938,016 INFO 2026-05-28 23:59:45 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:30:44s. Time for last 1,000,000: 7s. Last read position: chr10:89,007,835 INFO 2026-05-29 00:00:04 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:31:03s. Time for last 1,000,000: 18s. Last read position: chr10:94,593,547 INFO 2026-05-29 00:00:19 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:31:18s. Time for last 1,000,000: 14s. Last read position: chr10:98,423,818 INFO 2026-05-29 00:00:27 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:31:26s. Time for last 1,000,000: 7s. Last read position: chr10:101,810,187 INFO 2026-05-29 00:00:55 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:31:54s. Time for last 1,000,000: 27s. Last read position: chr10:103,089,683 INFO 2026-05-29 00:01:05 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:32:04s. Time for last 1,000,000: 10s. Last read position: chr10:112,464,643 INFO 2026-05-29 00:01:13 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:32:12s. Time for last 1,000,000: 8s. Last read position: chr10:119,056,786 INFO 2026-05-29 00:01:23 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:32:22s. Time for last 1,000,000: 9s. Last read position: chr10:124,942,638 INFO 2026-05-29 00:01:31 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:32:30s. Time for last 1,000,000: 7s. Last read position: chr10:128,111,740 INFO 2026-05-29 00:01:38 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:32:37s. Time for last 1,000,000: 7s. Last read position: chr11:212,458 INFO 2026-05-29 00:01:53 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:32:52s. Time for last 1,000,000: 14s. Last read position: chr11:2,395,433 INFO 2026-05-29 00:02:10 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:33:09s. Time for last 1,000,000: 17s. Last read position: chr11:6,629,741 INFO 2026-05-29 00:02:30 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:33:29s. Time for last 1,000,000: 20s. Last read position: chr11:11,353,019 INFO 2026-05-29 00:02:42 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:33:41s. Time for last 1,000,000: 11s. Last read position: chr11:27,498,663 INFO 2026-05-29 00:02:55 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:33:54s. Time for last 1,000,000: 12s. Last read position: chr11:32,976,351 INFO 2026-05-29 00:03:10 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:34:09s. Time for last 1,000,000: 14s. Last read position: chr11:34,090,561 INFO 2026-05-29 00:03:23 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:34:22s. Time for last 1,000,000: 13s. Last read position: chr11:40,114,781 INFO 2026-05-29 00:03:34 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:34:33s. Time for last 1,000,000: 11s. Last read position: chr11:45,805,871 INFO 2026-05-29 00:03:53 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:34:52s. Time for last 1,000,000: 19s. Last read position: chr11:46,679,413 INFO 2026-05-29 00:04:11 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:35:10s. Time for last 1,000,000: 17s. Last read position: chr11:47,173,434 INFO 2026-05-29 00:04:32 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:35:31s. Time for last 1,000,000: 20s. Last read position: chr11:47,584,440 INFO 2026-05-29 00:04:43 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:35:42s. Time for last 1,000,000: 11s. Last read position: chr11:57,425,615 INFO 2026-05-29 00:05:02 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:36:01s. Time for last 1,000,000: 18s. Last read position: chr11:60,922,251 INFO 2026-05-29 00:05:29 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:36:28s. Time for last 1,000,000: 27s. Last read position: chr11:61,811,031 INFO 2026-05-29 00:05:44 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:36:43s. Time for last 1,000,000: 15s. Last read position: chr11:62,520,131 INFO 2026-05-29 00:05:56 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:36:55s. Time for last 1,000,000: 11s. Last read position: chr11:62,720,107 INFO 2026-05-29 00:06:12 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:37:11s. Time for last 1,000,000: 16s. Last read position: chr11:63,904,933 INFO 2026-05-29 00:06:22 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:37:21s. Time for last 1,000,000: 9s. Last read position: chr11:64,766,030 INFO 2026-05-29 00:06:37 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:37:36s. Time for last 1,000,000: 15s. Last read position: chr11:65,183,518 INFO 2026-05-29 00:06:49 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:37:49s. Time for last 1,000,000: 12s. Last read position: chr11:65,654,792 INFO 2026-05-29 00:07:04 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:38:03s. Time for last 1,000,000: 14s. Last read position: chr11:66,265,195 INFO 2026-05-29 00:07:14 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:38:13s. Time for last 1,000,000: 9s. Last read position: chr11:66,690,073 INFO 2026-05-29 00:07:31 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:38:30s. Time for last 1,000,000: 17s. Last read position: chr11:67,586,486 INFO 2026-05-29 00:07:46 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:38:45s. Time for last 1,000,000: 14s. Last read position: chr11:69,641,300 INFO 2026-05-29 00:07:50 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:38:49s. Time for last 1,000,000: 4s. Last read position: chr11:69,648,118 INFO 2026-05-29 00:08:07 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:39:06s. Time for last 1,000,000: 16s. Last read position: chr11:72,014,495 INFO 2026-05-29 00:08:32 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:39:31s. Time for last 1,000,000: 25s. Last read position: chr11:74,906,413 INFO 2026-05-29 00:08:50 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:39:49s. Time for last 1,000,000: 18s. Last read position: chr11:78,113,951 INFO 2026-05-29 00:09:14 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:40:13s. Time for last 1,000,000: 23s. Last read position: chr11:87,220,624 INFO 2026-05-29 00:09:32 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:40:31s. Time for last 1,000,000: 18s. Last read position: chr11:102,111,048 INFO 2026-05-29 00:09:48 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:40:47s. Time for last 1,000,000: 15s. Last read position: chr11:108,161,452 INFO 2026-05-29 00:10:07 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:41:06s. Time for last 1,000,000: 19s. Last read position: chr11:114,252,781 INFO 2026-05-29 00:10:21 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:41:20s. Time for last 1,000,000: 14s. Last read position: chr11:118,502,403 INFO 2026-05-29 00:10:39 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:41:38s. Time for last 1,000,000: 18s. Last read position: chr11:119,095,282 INFO 2026-05-29 00:10:55 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:41:54s. Time for last 1,000,000: 15s. Last read position: chr11:123,060,171 INFO 2026-05-29 00:11:10 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:42:09s. Time for last 1,000,000: 15s. Last read position: chr11:128,972,759 INFO 2026-05-29 00:11:23 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:42:22s. Time for last 1,000,000: 12s. Last read position: chr12:812,369 INFO 2026-05-29 00:11:42 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:42:41s. Time for last 1,000,000: 19s. Last read position: chr12:4,556,359 INFO 2026-05-29 00:12:23 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:43:22s. Time for last 1,000,000: 40s. Last read position: chr12:6,729,411 INFO 2026-05-29 00:12:32 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:43:31s. Time for last 1,000,000: 8s. Last read position: chr12:6,944,076 INFO 2026-05-29 00:12:43 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:43:42s. Time for last 1,000,000: 10s. Last read position: chr12:11,429,931 INFO 2026-05-29 00:12:56 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:43:55s. Time for last 1,000,000: 13s. Last read position: chr12:16,576,501 INFO 2026-05-29 00:13:08 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:44:07s. Time for last 1,000,000: 11s. Last read position: chr12:29,660,841 INFO 2026-05-29 00:13:25 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:44:25s. Time for last 1,000,000: 17s. Last read position: chr12:44,523,415 INFO 2026-05-29 00:13:54 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:44:53s. Time for last 1,000,000: 28s. Last read position: chr12:45,730,085 INFO 2026-05-29 00:14:11 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:45:10s. Time for last 1,000,000: 17s. Last read position: chr12:48,776,449 INFO 2026-05-29 00:14:21 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:45:21s. Time for last 1,000,000: 10s. Last read position: chr12:49,128,016 INFO 2026-05-29 00:14:28 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:45:27s. Time for last 1,000,000: 6s. Last read position: chr12:49,323,340 INFO 2026-05-29 00:14:46 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:45:45s. Time for last 1,000,000: 18s. Last read position: chr12:50,537,290 INFO 2026-05-29 00:15:01 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:46:00s. Time for last 1,000,000: 14s. Last read position: chr12:53,297,879 INFO 2026-05-29 00:15:19 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:46:18s. Time for last 1,000,000: 18s. Last read position: chr12:54,028,873 INFO 2026-05-29 00:15:48 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:46:47s. Time for last 1,000,000: 28s. Last read position: chr12:54,516,272 INFO 2026-05-29 00:15:59 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:46:58s. Time for last 1,000,000: 11s. Last read position: chr12:56,128,296 INFO 2026-05-29 00:16:16 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:47:15s. Time for last 1,000,000: 16s. Last read position: chr12:56,600,237 INFO 2026-05-29 00:16:33 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:47:33s. Time for last 1,000,000: 17s. Last read position: chr12:57,003,556 INFO 2026-05-29 00:16:51 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:47:50s. Time for last 1,000,000: 17s. Last read position: chr12:57,206,651 INFO 2026-05-29 00:17:12 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:48:11s. Time for last 1,000,000: 21s. Last read position: chr12:57,532,575 INFO 2026-05-29 00:17:29 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:48:28s. Time for last 1,000,000: 16s. Last read position: chr12:64,445,077 INFO 2026-05-29 00:17:44 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:48:43s. Time for last 1,000,000: 15s. Last read position: chr12:69,574,777 INFO 2026-05-29 00:18:04 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:49:03s. Time for last 1,000,000: 20s. Last read position: chr12:76,067,447 INFO 2026-05-29 00:18:22 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:49:21s. Time for last 1,000,000: 17s. Last read position: chr12:93,410,830 INFO 2026-05-29 00:18:35 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:49:34s. Time for last 1,000,000: 13s. Last read position: chr12:98,598,673 INFO 2026-05-29 00:18:58 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:49:57s. Time for last 1,000,000: 22s. Last read position: chr12:104,304,702 INFO 2026-05-29 00:19:13 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:50:12s. Time for last 1,000,000: 15s. Last read position: chr12:110,019,147 INFO 2026-05-29 00:19:34 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:50:33s. Time for last 1,000,000: 20s. Last read position: chr12:111,665,746 INFO 2026-05-29 00:19:50 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:50:49s. Time for last 1,000,000: 16s. Last read position: chr12:113,268,804 INFO 2026-05-29 00:20:09 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:51:08s. Time for last 1,000,000: 18s. Last read position: chr12:119,735,194 INFO 2026-05-29 00:20:27 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:51:26s. Time for last 1,000,000: 17s. Last read position: chr12:121,004,382 INFO 2026-05-29 00:20:42 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:51:41s. Time for last 1,000,000: 15s. Last read position: chr12:122,603,135 INFO 2026-05-29 00:20:58 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:51:57s. Time for last 1,000,000: 15s. Last read position: chr12:124,336,817 INFO 2026-05-29 00:21:19 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:52:18s. Time for last 1,000,000: 20s. Last read position: chr12:130,875,894 INFO 2026-05-29 00:21:28 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:52:28s. Time for last 1,000,000: 9s. Last read position: chr12:132,583,085 INFO 2026-05-29 00:21:45 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:52:44s. Time for last 1,000,000: 16s. Last read position: chr13:19,993,156 INFO 2026-05-29 00:21:57 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:52:56s. Time for last 1,000,000: 11s. Last read position: chr13:23,335,790 INFO 2026-05-29 00:22:04 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:53:03s. Time for last 1,000,000: 7s. Last read position: chr13:27,621,915 INFO 2026-05-29 00:22:14 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:53:13s. Time for last 1,000,000: 10s. Last read position: chr13:32,536,036 INFO 2026-05-29 00:22:29 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:53:28s. Time for last 1,000,000: 14s. Last read position: chr13:39,013,595 INFO 2026-05-29 00:22:39 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:53:38s. Time for last 1,000,000: 10s. Last read position: chr13:45,965,280 INFO 2026-05-29 00:22:56 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:53:55s. Time for last 1,000,000: 16s. Last read position: chr13:48,233,363 INFO 2026-05-29 00:23:08 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:54:07s. Time for last 1,000,000: 12s. Last read position: chr13:57,633,755 INFO 2026-05-29 00:23:21 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:54:21s. Time for last 1,000,000: 13s. Last read position: chr13:77,719,597 INFO 2026-05-29 00:23:41 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:54:40s. Time for last 1,000,000: 19s. Last read position: chr13:98,015,551 INFO 2026-05-29 00:24:00 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:54:59s. Time for last 1,000,000: 18s. Last read position: chr13:102,244,032 INFO 2026-05-29 00:24:06 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:55:05s. Time for last 1,000,000: 5s. Last read position: chr13:109,785,633 INFO 2026-05-29 00:24:21 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:55:20s. Time for last 1,000,000: 15s. Last read position: chr13:113,320,408 INFO 2026-05-29 00:24:34 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:55:33s. Time for last 1,000,000: 13s. Last read position: chr14:21,092,287 INFO 2026-05-29 00:24:55 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:55:54s. Time for last 1,000,000: 21s. Last read position: chr14:21,523,462 INFO 2026-05-29 00:25:08 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:56:07s. Time for last 1,000,000: 12s. Last read position: chr14:23,055,072 INFO 2026-05-29 00:25:23 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:56:22s. Time for last 1,000,000: 15s. Last read position: chr14:24,184,714 INFO 2026-05-29 00:25:49 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:56:48s. Time for last 1,000,000: 26s. Last read position: chr14:31,128,852 INFO 2026-05-29 00:26:07 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:57:06s. Time for last 1,000,000: 17s. Last read position: chr14:39,122,495 INFO 2026-05-29 00:26:14 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:57:13s. Time for last 1,000,000: 6s. Last read position: chr14:49,586,741 INFO 2026-05-29 00:26:20 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:57:19s. Time for last 1,000,000: 6s. Last read position: chr14:50,729,690 INFO 2026-05-29 00:26:33 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:57:32s. Time for last 1,000,000: 13s. Last read position: chr14:55,637,777 INFO 2026-05-29 00:26:52 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:57:51s. Time for last 1,000,000: 18s. Last read position: chr14:60,982,628 INFO 2026-05-29 00:27:50 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:58:49s. Time for last 1,000,000: 57s. Last read position: chr14:64,460,334 INFO 2026-05-29 00:28:06 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:59:05s. Time for last 1,000,000: 16s. Last read position: chr14:69,453,247 INFO 2026-05-29 00:28:22 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:59:21s. Time for last 1,000,000: 15s. Last read position: chr14:73,851,919 INFO 2026-05-29 00:28:36 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:59:35s. Time for last 1,000,000: 14s. Last read position: chr14:77,027,145 INFO 2026-05-29 00:28:49 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:59:48s. Time for last 1,000,000: 12s. Last read position: chr14:90,401,299 INFO 2026-05-29 00:29:02 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 02:00:01s. Time for last 1,000,000: 13s. Last read position: chr14:95,132,537 INFO 2026-05-29 00:29:23 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 02:00:22s. Time for last 1,000,000: 21s. Last read position: chr14:99,878,547 INFO 2026-05-29 00:30:56 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 02:01:55s. Time for last 1,000,000: 93s. Last read position: chr14:102,018,604 INFO 2026-05-29 00:33:02 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 02:04:01s. Time for last 1,000,000: 125s. Last read position: chr14:102,939,830 INFO 2026-05-29 00:33:36 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 02:04:35s. Time for last 1,000,000: 34s. Last read position: chr14:104,774,952 INFO 2026-05-29 00:33:51 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 02:04:50s. Time for last 1,000,000: 15s. Last read position: chr15:22,925,978 INFO 2026-05-29 00:34:42 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 02:05:41s. Time for last 1,000,000: 50s. Last read position: chr15:30,904,957 INFO 2026-05-29 00:34:54 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 02:05:53s. Time for last 1,000,000: 11s. Last read position: chr15:40,161,241 INFO 2026-05-29 00:35:06 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 02:06:05s. Time for last 1,000,000: 12s. Last read position: chr15:41,537,020 INFO 2026-05-29 00:35:23 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 02:06:22s. Time for last 1,000,000: 16s. Last read position: chr15:42,652,555 INFO 2026-05-29 00:35:33 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 02:06:32s. Time for last 1,000,000: 9s. Last read position: chr15:43,527,694 INFO 2026-05-29 00:35:44 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 02:06:43s. Time for last 1,000,000: 11s. Last read position: chr15:45,023,226 INFO 2026-05-29 00:35:58 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 02:06:57s. Time for last 1,000,000: 13s. Last read position: chr15:51,450,263 INFO 2026-05-29 00:36:15 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 02:07:14s. Time for last 1,000,000: 17s. Last read position: chr15:57,231,246 INFO 2026-05-29 00:36:39 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 02:07:38s. Time for last 1,000,000: 24s. Last read position: chr15:60,349,075 INFO 2026-05-29 00:36:59 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 02:07:58s. Time for last 1,000,000: 20s. Last read position: chr15:64,819,916 INFO 2026-05-29 00:37:11 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 02:08:10s. Time for last 1,000,000: 11s. Last read position: chr15:68,193,974 INFO 2026-05-29 00:37:28 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 02:08:27s. Time for last 1,000,000: 16s. Last read position: chr15:72,209,700 INFO 2026-05-29 00:37:45 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 02:08:44s. Time for last 1,000,000: 16s. Last read position: chr15:74,801,018 INFO 2026-05-29 00:38:01 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 02:09:00s. Time for last 1,000,000: 15s. Last read position: chr15:76,795,315 INFO 2026-05-29 00:38:15 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 02:09:14s. Time for last 1,000,000: 14s. Last read position: chr15:80,121,752 INFO 2026-05-29 00:38:26 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 02:09:26s. Time for last 1,000,000: 11s. Last read position: chr15:85,693,405 INFO 2026-05-29 00:38:44 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 02:09:43s. Time for last 1,000,000: 17s. Last read position: chr15:90,388,308 INFO 2026-05-29 00:39:01 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 02:10:00s. Time for last 1,000,000: 16s. Last read position: chr15:96,334,260 INFO 2026-05-29 00:39:12 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 02:10:11s. Time for last 1,000,000: 11s. Last read position: chr16:381,701 INFO 2026-05-29 00:39:30 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 02:10:30s. Time for last 1,000,000: 18s. Last read position: chr16:794,192 INFO 2026-05-29 00:39:50 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 02:10:49s. Time for last 1,000,000: 19s. Last read position: chr16:1,697,818 INFO 2026-05-29 00:40:18 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 02:11:17s. Time for last 1,000,000: 28s. Last read position: chr16:2,090,074 INFO 2026-05-29 00:40:40 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 02:11:39s. Time for last 1,000,000: 22s. Last read position: chr16:2,514,101 INFO 2026-05-29 00:40:59 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 02:11:58s. Time for last 1,000,000: 18s. Last read position: chr16:2,770,624 INFO 2026-05-29 00:41:15 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 02:12:14s. Time for last 1,000,000: 16s. Last read position: chr16:3,770,832 INFO 2026-05-29 00:41:31 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 02:12:30s. Time for last 1,000,000: 15s. Last read position: chr16:8,858,387 INFO 2026-05-29 00:41:46 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 02:12:45s. Time for last 1,000,000: 15s. Last read position: chr16:14,247,252 INFO 2026-05-29 00:42:00 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 02:12:59s. Time for last 1,000,000: 13s. Last read position: chr16:15,104,684 INFO 2026-05-29 00:42:12 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 02:13:11s. Time for last 1,000,000: 12s. Last read position: chr16:16,328,702 INFO 2026-05-29 00:42:15 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 02:13:14s. Time for last 1,000,000: 2s. Last read position: chr16:18,372,578 INFO 2026-05-29 00:42:25 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 02:13:24s. Time for last 1,000,000: 9s. Last read position: chr16:19,545,848 INFO 2026-05-29 00:42:32 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 02:13:31s. Time for last 1,000,000: 7s. Last read position: chr16:21,837,284 INFO 2026-05-29 00:42:40 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 02:13:39s. Time for last 1,000,000: 7s. Last read position: chr16:22,535,010 INFO 2026-05-29 00:42:49 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 02:13:48s. Time for last 1,000,000: 9s. Last read position: chr16:24,571,639 INFO 2026-05-29 00:43:01 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 02:14:00s. Time for last 1,000,000: 11s. Last read position: chr16:28,379,743 INFO 2026-05-29 00:43:20 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 02:14:19s. Time for last 1,000,000: 18s. Last read position: chr16:28,836,807 INFO 2026-05-29 00:43:24 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 02:14:23s. Time for last 1,000,000: 4s. Last read position: chr16:29,695,136 INFO 2026-05-29 00:43:39 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 02:14:38s. Time for last 1,000,000: 14s. Last read position: chr16:30,070,220 INFO 2026-05-29 00:43:45 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 02:14:44s. Time for last 1,000,000: 5s. Last read position: chr16:30,655,500 INFO 2026-05-29 00:43:56 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 02:14:55s. Time for last 1,000,000: 10s. Last read position: chr16:31,076,951 INFO 2026-05-29 00:44:05 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 02:15:05s. Time for last 1,000,000: 9s. Last read position: chr16:31,186,801 INFO 2026-05-29 00:44:22 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 02:15:21s. Time for last 1,000,000: 16s. Last read position: chr16:31,459,746 INFO 2026-05-29 00:44:31 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 02:15:30s. Time for last 1,000,000: 8s. Last read position: chr16:51,646,724 INFO 2026-05-29 00:44:46 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 02:15:45s. Time for last 1,000,000: 14s. Last read position: chr16:56,453,262 INFO 2026-05-29 00:45:03 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 02:16:03s. Time for last 1,000,000: 17s. Last read position: chr16:58,545,425 INFO 2026-05-29 00:45:21 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 02:16:20s. Time for last 1,000,000: 17s. Last read position: chr16:67,200,170 INFO 2026-05-29 00:45:39 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 02:16:38s. Time for last 1,000,000: 18s. Last read position: chr16:68,259,331 INFO 2026-05-29 00:45:50 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 02:16:50s. Time for last 1,000,000: 11s. Last read position: chr16:70,217,189 INFO 2026-05-29 00:46:18 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 02:17:17s. Time for last 1,000,000: 27s. Last read position: chr16:71,895,579 INFO 2026-05-29 00:46:31 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 02:17:30s. Time for last 1,000,000: 12s. Last read position: chr16:74,485,890 INFO 2026-05-29 00:46:48 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 02:17:47s. Time for last 1,000,000: 16s. Last read position: chr16:79,154,865 INFO 2026-05-29 00:47:00 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 02:17:59s. Time for last 1,000,000: 12s. Last read position: chr16:87,383,467 INFO 2026-05-29 00:47:11 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 02:18:10s. Time for last 1,000,000: 10s. Last read position: chr16:88,804,588 INFO 2026-05-29 00:47:35 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 02:18:34s. Time for last 1,000,000: 24s. Last read position: chr16:89,561,736 INFO 2026-05-29 00:47:55 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 02:18:54s. Time for last 1,000,000: 19s. Last read position: chr16:90,031,439 INFO 2026-05-29 00:48:11 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 02:19:10s. Time for last 1,000,000: 16s. Last read position: chr17:1,364,873 INFO 2026-05-29 00:48:26 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 02:19:25s. Time for last 1,000,000: 14s. Last read position: chr17:1,787,579 INFO 2026-05-29 00:48:39 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 02:19:39s. Time for last 1,000,000: 13s. Last read position: chr17:4,044,275 INFO 2026-05-29 00:48:54 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 02:19:53s. Time for last 1,000,000: 14s. Last read position: chr17:4,946,806 INFO 2026-05-29 00:49:07 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 02:20:06s. Time for last 1,000,000: 12s. Last read position: chr17:7,220,124 INFO 2026-05-29 00:49:22 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 02:20:21s. Time for last 1,000,000: 14s. Last read position: chr17:7,462,770 INFO 2026-05-29 00:49:36 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 02:20:35s. Time for last 1,000,000: 14s. Last read position: chr17:7,577,133 INFO 2026-05-29 00:49:56 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 02:20:55s. Time for last 1,000,000: 20s. Last read position: chr17:7,910,909 INFO 2026-05-29 00:50:12 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 02:21:11s. Time for last 1,000,000: 15s. Last read position: chr17:9,779,670 INFO 2026-05-29 00:50:30 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 02:21:29s. Time for last 1,000,000: 17s. Last read position: chr17:17,078,010 INFO 2026-05-29 00:50:45 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 02:21:44s. Time for last 1,000,000: 15s. Last read position: chr17:18,247,330 INFO 2026-05-29 00:51:00 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 02:22:00s. Time for last 1,000,000: 15s. Last read position: chr17:26,774,512 INFO 2026-05-29 00:51:14 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 02:22:13s. Time for last 1,000,000: 13s. Last read position: chr17:28,700,412 INFO 2026-05-29 00:51:29 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 02:22:28s. Time for last 1,000,000: 14s. Last read position: chr17:29,612,137 INFO 2026-05-29 00:51:44 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 02:22:43s. Time for last 1,000,000: 15s. Last read position: chr17:32,933,290 INFO 2026-05-29 00:52:00 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 02:22:59s. Time for last 1,000,000: 16s. Last read position: chr17:38,196,372 INFO 2026-05-29 00:52:11 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 02:23:10s. Time for last 1,000,000: 11s. Last read position: chr17:40,392,222 INFO 2026-05-29 00:52:32 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 02:23:31s. Time for last 1,000,000: 20s. Last read position: chr17:42,673,497 INFO 2026-05-29 00:52:48 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 02:23:47s. Time for last 1,000,000: 16s. Last read position: chr17:44,902,460 INFO 2026-05-29 00:53:04 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 02:24:03s. Time for last 1,000,000: 16s. Last read position: chr17:47,973,543 INFO 2026-05-29 00:53:15 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 02:24:14s. Time for last 1,000,000: 10s. Last read position: chr17:49,378,658 INFO 2026-05-29 00:53:37 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 02:24:36s. Time for last 1,000,000: 22s. Last read position: chr17:51,041,641 INFO 2026-05-29 00:53:49 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 02:24:48s. Time for last 1,000,000: 12s. Last read position: chr17:58,980,913 INFO 2026-05-29 00:54:03 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 02:25:02s. Time for last 1,000,000: 13s. Last read position: chr17:59,680,921 INFO 2026-05-29 00:54:24 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 02:25:23s. Time for last 1,000,000: 20s. Last read position: chr17:61,801,285 INFO 2026-05-29 00:54:40 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 02:25:39s. Time for last 1,000,000: 16s. Last read position: chr17:63,834,524 INFO 2026-05-29 00:54:59 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 02:25:58s. Time for last 1,000,000: 18s. Last read position: chr17:67,945,592 INFO 2026-05-29 00:55:18 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 02:26:17s. Time for last 1,000,000: 18s. Last read position: chr17:75,128,791 INFO 2026-05-29 00:55:34 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 02:26:33s. Time for last 1,000,000: 16s. Last read position: chr17:75,910,770 INFO 2026-05-29 00:55:51 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 02:26:50s. Time for last 1,000,000: 17s. Last read position: chr17:78,175,083 INFO 2026-05-29 00:56:05 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 02:27:04s. Time for last 1,000,000: 13s. Last read position: chr17:80,389,311 INFO 2026-05-29 00:56:19 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 02:27:18s. Time for last 1,000,000: 14s. Last read position: chr17:81,597,245 INFO 2026-05-29 00:56:51 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 02:27:50s. Time for last 1,000,000: 32s. Last read position: chr17:82,009,164 INFO 2026-05-29 00:57:07 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 02:28:06s. Time for last 1,000,000: 15s. Last read position: chr17:82,093,289 INFO 2026-05-29 00:57:25 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 02:28:24s. Time for last 1,000,000: 18s. Last read position: chr18:742,979 INFO 2026-05-29 00:57:39 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 02:28:38s. Time for last 1,000,000: 13s. Last read position: chr18:9,611,312 INFO 2026-05-29 00:57:51 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 02:28:50s. Time for last 1,000,000: 12s. Last read position: chr18:13,113,625 INFO 2026-05-29 00:58:05 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 02:29:04s. Time for last 1,000,000: 13s. Last read position: chr18:32,412,495 INFO 2026-05-29 00:58:20 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 02:29:19s. Time for last 1,000,000: 15s. Last read position: chr18:46,509,713 INFO 2026-05-29 00:58:37 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 02:29:37s. Time for last 1,000,000: 17s. Last read position: chr18:52,340,726 INFO 2026-05-29 00:59:09 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 02:30:08s. Time for last 1,000,000: 31s. Last read position: chr18:58,919,130 INFO 2026-05-29 00:59:23 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 02:30:22s. Time for last 1,000,000: 14s. Last read position: chr18:63,355,283 INFO 2026-05-29 00:59:34 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 02:30:33s. Time for last 1,000,000: 11s. Last read position: chr18:80,160,516 INFO 2026-05-29 00:59:51 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 02:30:50s. Time for last 1,000,000: 16s. Last read position: chr19:811,265 INFO 2026-05-29 01:00:03 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 02:31:02s. Time for last 1,000,000: 11s. Last read position: chr19:1,254,242 INFO 2026-05-29 01:00:16 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 02:31:15s. Time for last 1,000,000: 13s. Last read position: chr19:1,611,711 INFO 2026-05-29 01:00:31 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 02:31:30s. Time for last 1,000,000: 14s. Last read position: chr19:2,137,745 INFO 2026-05-29 01:00:40 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 02:31:39s. Time for last 1,000,000: 8s. Last read position: chr19:2,807,626 INFO 2026-05-29 01:00:51 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 02:31:50s. Time for last 1,000,000: 10s. Last read position: chr19:4,090,660 INFO 2026-05-29 01:01:00 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 02:31:59s. Time for last 1,000,000: 9s. Last read position: chr19:4,929,295 INFO 2026-05-29 01:01:19 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 02:32:18s. Time for last 1,000,000: 18s. Last read position: chr19:5,591,750 INFO 2026-05-29 01:01:32 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 02:32:31s. Time for last 1,000,000: 13s. Last read position: chr19:6,415,123 INFO 2026-05-29 01:01:45 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 02:32:44s. Time for last 1,000,000: 13s. Last read position: chr19:7,869,306 INFO 2026-05-29 01:01:56 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 02:32:55s. Time for last 1,000,000: 10s. Last read position: chr19:9,653,284 INFO 2026-05-29 01:02:34 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 02:33:33s. Time for last 1,000,000: 38s. Last read position: chr19:10,328,660 INFO 2026-05-29 01:02:54 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 02:33:53s. Time for last 1,000,000: 19s. Last read position: chr19:10,904,967 INFO 2026-05-29 01:03:59 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 02:34:58s. Time for last 1,000,000: 64s. Last read position: chr19:11,436,155 INFO 2026-05-29 01:04:12 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 02:35:11s. Time for last 1,000,000: 13s. Last read position: chr19:12,800,995 INFO 2026-05-29 01:04:25 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 02:35:24s. Time for last 1,000,000: 13s. Last read position: chr19:13,772,131 INFO 2026-05-29 01:04:36 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 02:35:36s. Time for last 1,000,000: 11s. Last read position: chr19:14,516,533 INFO 2026-05-29 01:04:48 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 02:35:47s. Time for last 1,000,000: 11s. Last read position: chr19:15,244,534 INFO 2026-05-29 01:05:05 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 02:36:04s. Time for last 1,000,000: 17s. Last read position: chr19:15,544,226 INFO 2026-05-29 01:05:21 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 02:36:20s. Time for last 1,000,000: 16s. Last read position: chr19:17,315,974 INFO 2026-05-29 01:05:30 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 02:36:29s. Time for last 1,000,000: 8s. Last read position: chr19:18,419,638 INFO 2026-05-29 01:05:42 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 02:36:41s. Time for last 1,000,000: 12s. Last read position: chr19:18,865,308 INFO 2026-05-29 01:05:56 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 02:36:55s. Time for last 1,000,000: 13s. Last read position: chr19:19,679,596 INFO 2026-05-29 01:06:04 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 02:37:03s. Time for last 1,000,000: 7s. Last read position: chr19:34,172,702 INFO 2026-05-29 01:06:17 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 02:37:16s. Time for last 1,000,000: 13s. Last read position: chr19:35,721,033 INFO 2026-05-29 01:06:38 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 02:37:37s. Time for last 1,000,000: 21s. Last read position: chr19:37,414,120 INFO 2026-05-29 01:06:50 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 02:37:50s. Time for last 1,000,000: 12s. Last read position: chr19:39,314,964 INFO 2026-05-29 01:07:04 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 02:38:03s. Time for last 1,000,000: 13s. Last read position: chr19:39,885,696 INFO 2026-05-29 01:07:22 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 02:38:21s. Time for last 1,000,000: 17s. Last read position: chr19:40,580,871 INFO 2026-05-29 01:07:44 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 02:38:43s. Time for last 1,000,000: 22s. Last read position: chr19:41,506,155 INFO 2026-05-29 01:07:57 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 02:38:56s. Time for last 1,000,000: 12s. Last read position: chr19:42,286,856 INFO 2026-05-29 01:08:10 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 02:39:09s. Time for last 1,000,000: 12s. Last read position: chr19:43,551,658 INFO 2026-05-29 01:08:19 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 02:39:19s. Time for last 1,000,000: 9s. Last read position: chr19:45,363,990 INFO 2026-05-29 01:08:31 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 02:39:30s. Time for last 1,000,000: 11s. Last read position: chr19:46,605,847 INFO 2026-05-29 01:08:42 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 02:39:41s. Time for last 1,000,000: 10s. Last read position: chr19:47,372,730 INFO 2026-05-29 01:08:57 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 02:39:56s. Time for last 1,000,000: 15s. Last read position: chr19:48,616,128 INFO 2026-05-29 01:09:10 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 02:40:09s. Time for last 1,000,000: 12s. Last read position: chr19:49,343,287 INFO 2026-05-29 01:09:23 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 02:40:22s. Time for last 1,000,000: 12s. Last read position: chr19:49,597,434 INFO 2026-05-29 01:09:35 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 02:40:34s. Time for last 1,000,000: 11s. Last read position: chr19:49,851,268 INFO 2026-05-29 01:09:50 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 02:40:50s. Time for last 1,000,000: 15s. Last read position: chr19:50,403,057 INFO 2026-05-29 01:10:00 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 02:41:00s. Time for last 1,000,000: 9s. Last read position: chr19:53,381,074 INFO 2026-05-29 01:10:13 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 02:41:12s. Time for last 1,000,000: 12s. Last read position: chr19:55,231,821 INFO 2026-05-29 01:10:20 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 02:41:19s. Time for last 1,000,000: 7s. Last read position: chr19:55,673,932 INFO 2026-05-29 01:10:48 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 02:41:47s. Time for last 1,000,000: 27s. Last read position: chr19:57,280,781 INFO 2026-05-29 01:10:56 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 02:41:55s. Time for last 1,000,000: 7s. Last read position: chr19:58,471,772 INFO 2026-05-29 01:11:10 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 02:42:09s. Time for last 1,000,000: 14s. Last read position: chr20:495,787 INFO 2026-05-29 01:11:24 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 02:42:23s. Time for last 1,000,000: 13s. Last read position: chr20:3,148,652 INFO 2026-05-29 01:11:30 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 02:42:29s. Time for last 1,000,000: 6s. Last read position: chr20:5,750,383 INFO 2026-05-29 01:11:42 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 02:42:42s. Time for last 1,000,000: 12s. Last read position: chr20:18,525,916 INFO 2026-05-29 01:11:49 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 02:42:48s. Time for last 1,000,000: 6s. Last read position: chr20:25,453,378 INFO 2026-05-29 01:12:03 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 02:43:02s. Time for last 1,000,000: 13s. Last read position: chr20:33,662,313 INFO 2026-05-29 01:12:15 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 02:43:14s. Time for last 1,000,000: 12s. Last read position: chr20:35,284,250 INFO 2026-05-29 01:12:37 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 02:43:36s. Time for last 1,000,000: 21s. Last read position: chr20:36,793,968 INFO 2026-05-29 01:12:48 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 02:43:47s. Time for last 1,000,000: 11s. Last read position: chr20:41,173,748 INFO 2026-05-29 01:12:57 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 02:43:56s. Time for last 1,000,000: 8s. Last read position: chr20:44,943,011 INFO 2026-05-29 01:13:16 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 02:44:15s. Time for last 1,000,000: 19s. Last read position: chr20:48,649,536 INFO 2026-05-29 01:13:26 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 02:44:25s. Time for last 1,000,000: 9s. Last read position: chr20:50,830,341 INFO 2026-05-29 01:13:40 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 02:44:39s. Time for last 1,000,000: 14s. Last read position: chr20:58,895,654 INFO 2026-05-29 01:14:03 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 02:45:02s. Time for last 1,000,000: 22s. Last read position: chr20:62,804,960 INFO 2026-05-29 01:14:13 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 02:45:12s. Time for last 1,000,000: 10s. Last read position: chr20:63,960,107 INFO 2026-05-29 01:14:18 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 02:45:17s. Time for last 1,000,000: 4s. Last read position: chr21:8,209,671 INFO 2026-05-29 01:14:19 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 02:45:18s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,880 INFO 2026-05-29 01:14:20 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:45:19s. Time for last 1,000,000: 0s. Last read position: chr21:8,257,904 INFO 2026-05-29 01:14:21 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:45:21s. Time for last 1,000,000: 1s. Last read position: chr21:8,396,598 INFO 2026-05-29 01:14:23 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:45:22s. Time for last 1,000,000: 1s. Last read position: chr21:8,435,037 INFO 2026-05-29 01:14:24 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:45:23s. Time for last 1,000,000: 0s. Last read position: chr21:8,443,256 INFO 2026-05-29 01:14:26 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:45:25s. Time for last 1,000,000: 2s. Last read position: chr21:14,166,384 INFO 2026-05-29 01:14:39 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:45:38s. Time for last 1,000,000: 12s. Last read position: chr21:28,935,221 INFO 2026-05-29 01:14:50 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:45:49s. Time for last 1,000,000: 11s. Last read position: chr21:33,517,058 INFO 2026-05-29 01:15:06 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:46:05s. Time for last 1,000,000: 16s. Last read position: chr21:37,067,257 INFO 2026-05-29 01:15:34 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:46:33s. Time for last 1,000,000: 27s. Last read position: chr21:43,056,824 INFO 2026-05-29 01:15:43 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:46:42s. Time for last 1,000,000: 8s. Last read position: chr21:44,777,321 INFO 2026-05-29 01:15:56 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:46:55s. Time for last 1,000,000: 12s. Last read position: chr21:46,438,256 INFO 2026-05-29 01:16:09 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:47:08s. Time for last 1,000,000: 13s. Last read position: chr22:19,508,610 INFO 2026-05-29 01:16:24 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:47:23s. Time for last 1,000,000: 14s. Last read position: chr22:20,999,872 INFO 2026-05-29 01:16:37 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:47:36s. Time for last 1,000,000: 13s. Last read position: chr22:23,613,308 INFO 2026-05-29 01:16:49 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:47:48s. Time for last 1,000,000: 11s. Last read position: chr22:26,561,203 INFO 2026-05-29 01:17:08 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 02:48:07s. Time for last 1,000,000: 18s. Last read position: chr22:29,287,074 INFO 2026-05-29 01:17:28 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 02:48:27s. Time for last 1,000,000: 20s. Last read position: chr22:30,340,362 INFO 2026-05-29 01:17:49 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 02:48:48s. Time for last 1,000,000: 20s. Last read position: chr22:31,944,792 INFO 2026-05-29 01:18:00 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 02:48:59s. Time for last 1,000,000: 10s. Last read position: chr22:36,511,522 INFO 2026-05-29 01:18:14 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 02:49:13s. Time for last 1,000,000: 14s. Last read position: chr22:38,374,174 INFO 2026-05-29 01:18:23 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 02:49:22s. Time for last 1,000,000: 8s. Last read position: chr22:39,522,055 INFO 2026-05-29 01:18:37 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:49:36s. Time for last 1,000,000: 14s. Last read position: chr22:41,249,362 INFO 2026-05-29 01:18:53 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:49:52s. Time for last 1,000,000: 15s. Last read position: chr22:41,923,429 INFO 2026-05-29 01:19:00 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:49:59s. Time for last 1,000,000: 6s. Last read position: chr22:44,702,501 INFO 2026-05-29 01:19:10 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:50:09s. Time for last 1,000,000: 10s. Last read position: chr22:49,919,235 INFO 2026-05-29 01:19:24 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:50:23s. Time for last 1,000,000: 14s. Last read position: chr22:50,468,389 INFO 2026-05-29 01:19:30 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:50:29s. Time for last 1,000,000: 6s. Last read position: chrX:2,691,409 INFO 2026-05-29 01:19:37 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:50:36s. Time for last 1,000,000: 6s. Last read position: chrX:16,683,108 INFO 2026-05-29 01:19:49 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:50:48s. Time for last 1,000,000: 12s. Last read position: chrX:24,812,836 INFO 2026-05-29 01:20:08 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:51:07s. Time for last 1,000,000: 19s. Last read position: chrX:41,152,965 INFO 2026-05-29 01:20:46 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:51:45s. Time for last 1,000,000: 38s. Last read position: chrX:47,202,446 INFO 2026-05-29 01:20:59 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:51:58s. Time for last 1,000,000: 12s. Last read position: chrX:48,604,898 INFO 2026-05-29 01:21:11 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:52:10s. Time for last 1,000,000: 12s. Last read position: chrX:51,827,967 INFO 2026-05-29 01:21:18 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:52:18s. Time for last 1,000,000: 7s. Last read position: chrX:53,194,942 INFO 2026-05-29 01:21:41 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:52:40s. Time for last 1,000,000: 22s. Last read position: chrX:53,617,404 INFO 2026-05-29 01:21:57 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:52:56s. Time for last 1,000,000: 16s. Last read position: chrX:68,511,848 INFO 2026-05-29 01:22:19 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:53:18s. Time for last 1,000,000: 21s. Last read position: chrX:71,392,620 INFO 2026-05-29 01:22:38 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:53:37s. Time for last 1,000,000: 18s. Last read position: chrX:77,682,486 INFO 2026-05-29 01:22:49 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 02:53:49s. Time for last 1,000,000: 11s. Last read position: chrX:86,160,221 INFO 2026-05-29 01:22:57 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 02:53:57s. Time for last 1,000,000: 7s. Last read position: chrX:109,659,452 INFO 2026-05-29 01:23:14 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 02:54:13s. Time for last 1,000,000: 16s. Last read position: chrX:124,200,113 INFO 2026-05-29 01:23:28 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 02:54:27s. Time for last 1,000,000: 13s. Last read position: chrX:135,032,641 INFO 2026-05-29 01:23:40 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 02:54:39s. Time for last 1,000,000: 12s. Last read position: chrX:150,852,794 INFO 2026-05-29 01:23:51 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 02:54:50s. Time for last 1,000,000: 10s. Last read position: chrX:154,092,188 INFO 2026-05-29 01:24:24 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 02:55:23s. Time for last 1,000,000: 33s. Last read position: chrX:154,448,904 INFO 2026-05-29 01:24:30 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 02:55:29s. Time for last 1,000,000: 5s. Last read position: chrM:6,960 INFO 2026-05-29 01:24:31 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 02:55:30s. Time for last 1,000,000: 1s. Last read position: GL000220.1:109,937 INFO 2026-05-29 01:24:32 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 02:55:31s. Time for last 1,000,000: 0s. Last read position: GL000220.1:116,393 INFO 2026-05-29 01:24:33 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 02:55:32s. Time for last 1,000,000: 0s. Last read position: GL000220.1:157,046 INFO 2026-05-29 01:24:34 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 02:55:33s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,792 INFO 2026-05-29 01:24:34 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 02:55:33s. Time for last 1,000,000: 0s. Last read position: KI270733.1:129,882 INFO 2026-05-29 01:24:35 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 02:55:34s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,614 INFO 2026-05-29 01:24:36 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 02:55:35s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,755 INFO 2026-05-29 01:24:37 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 02:55:36s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,585 INFO 2026-05-29 01:24:38 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 02:55:37s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-05-29 01:24:39 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 02:55:38s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-05-29 01:24:40 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 02:55:39s. Time for last 1,000,000: 0s. Last read position: */* [Fri May 29 01:24:42 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 175.75 minutes. Runtime.totalMemory()=3421503488