Work Directory

Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_QC (22Rv1_FFPE_RNA_0001_B23LG7FLT4_1)
Attempt
1
S3 Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/61595fa1a43d3292b977c3e80275b2

Files (85)

Name Size Modified
.command.begin 6 bytes May 28, 2026 1:14 PM
.command.err 5.0 KB May 28, 2026 1:16 PM
.command.log 10.3 KB May 28, 2026 1:16 PM
.command.out 4.0 KB May 28, 2026 1:16 PM
.command.run 15.0 KB May 28, 2026 1:13 PM
.command.sh 949 bytes May 28, 2026 1:13 PM
.command.trace 299 bytes May 28, 2026 1:16 PM
.command.yaml 3.8 KB May 28, 2026 1:13 PM
.exitcode 1 byte May 28, 2026 1:16 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md.bai 5.9 MB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md.bam 1.5 GB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md.mpileup 323.0 KB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md.depth.gz 67.3 MB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md.depth.gz.tbi 558.9 KB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md.depth.png 20.8 KB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md.depth_hist.tsv 10.5 KB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/contamination.tsv 168 bytes May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/depth_stats.Twist_rna_exome_AND_fusion_hg38.bed.tsv 442 bytes May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/fragsize.fragsize.png 31.4 KB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/fragsize.fragsize.table 312 bytes May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/full_bed.bed 4.6 MB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/gc_bias.Twist_rna_exome_AND_fusion_hg38.bed.png 45.5 KB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/gc_bias_qc.Twist_rna_exome_AND_fusion_hg38.bed.tsv 551 bytes May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/qc_complete.txt 29 bytes May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/read_qc.Twist_rna_exome_AND_fusion_hg38.bed.tsv 609 bytes May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/reads_per_target.Twist_rna_exome_AND_fusion_hg38.bed.tsv 5.1 MB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/saturation_plot.png 48.0 KB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/saturation_qc.tsv 78 bytes May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.md/total_base_counts.Twist_rna_exome_AND_fusion_hg38.bed.tsv 66 bytes May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1_basic_stats.tsv 1.3 KB May 28, 2026 1:15 PM
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1_full_basic_stats.tsv 1.3 KB May 28, 2026 1:15 PM
Homo_sapiens_assembly38.dbsnp138.vcf.gz 1.4 GB May 28, 2026 1:15 PM
Homo_sapiens_assembly38.dbsnp138.vcf.gz.tbi 2.2 MB May 28, 2026 1:15 PM
Twist_rna_exome_AND_fusion_hg38.bed 4.6 MB May 28, 2026 1:15 PM
dbsnp_hg38_contam_sites.bed 607.2 KB May 28, 2026 1:15 PM
nextflow-bin/__pycache__/bclconvert_to_sample_type_map.cpython-312.pyc 6.4 KB May 28, 2026 1:15 PM
nextflow-bin/__pycache__/demux_by_sample.cpython-312.pyc 4.7 KB May 28, 2026 1:15 PM
nextflow-bin/__pycache__/filter_arriba_main.cpython-312.pyc 14.2 KB May 28, 2026 1:15 PM
nextflow-bin/__pycache__/filter_starfusion_main.cpython-312.pyc 23.3 KB May 28, 2026 1:15 PM
nextflow-bin/__pycache__/multiqc_general_stats_to_tsv.cpython-312.pyc 8.0 KB May 28, 2026 1:15 PM
nextflow-bin/__pycache__/run_level_intermediate.cpython-312.pyc 14.2 KB May 28, 2026 1:15 PM
nextflow-bin/__pycache__/run_level_metrics.cpython-312.pyc 7.8 KB May 28, 2026 1:15 PM
nextflow-bin/__pycache__/sample_sheet_qc.cpython-312.pyc 29.9 KB May 28, 2026 1:15 PM
nextflow-bin/__pycache__/seqtool_to_multiqc.cpython-312.pyc 17.6 KB May 28, 2026 1:15 PM
nextflow-bin/bclconvert_to_sample_type_map.py 4.4 KB May 28, 2026 1:15 PM
nextflow-bin/cancer_introns_to_vcf.py 9.4 KB May 28, 2026 1:15 PM
nextflow-bin/contamination_to_multiqc.py 3.5 KB May 28, 2026 1:15 PM
nextflow-bin/copy_input_to_outdir.py 4.1 KB May 28, 2026 1:15 PM
nextflow-bin/copy_input_to_outdir.sh 2.1 KB May 28, 2026 1:15 PM
nextflow-bin/demux_by_sample.py 4.8 KB May 28, 2026 1:15 PM
nextflow-bin/expression_qc_and_signatures.py 8.1 KB May 28, 2026 1:15 PM
nextflow-bin/extract_vaf_features.py 5.4 KB May 28, 2026 1:15 PM
nextflow-bin/filter_arriba_main.py 9.7 KB May 28, 2026 1:15 PM
nextflow-bin/filter_starfusion_main.py 19.7 KB May 28, 2026 1:15 PM
nextflow-bin/flowcell_qc.py 11.5 KB May 28, 2026 1:15 PM
nextflow-bin/get_rrna_transcripts.py 2.4 KB May 28, 2026 1:15 PM
nextflow-bin/gtf2bed 4.0 KB May 28, 2026 1:15 PM
nextflow-bin/kallisto_to_multiqc.py 12.2 KB May 28, 2026 1:15 PM
nextflow-bin/lib/__init__.py 375 bytes May 28, 2026 1:15 PM
nextflow-bin/lib/__pycache__/aih_curated_blacklist.cpython-312.pyc 7.0 KB May 28, 2026 1:15 PM
nextflow-bin/lib/__pycache__/filter_arriba_from_config.cpython-312.pyc 24.2 KB May 28, 2026 1:15 PM
nextflow-bin/lib/__pycache__/filter_starfusions_from_config.cpython-312.pyc 24.1 KB May 28, 2026 1:15 PM
nextflow-bin/lib/__pycache__/flag_starfusions_blacklist.cpython-312.pyc 26.3 KB May 28, 2026 1:15 PM
nextflow-bin/lib/aih_curated_blacklist.py 4.7 KB May 28, 2026 1:15 PM
nextflow-bin/lib/filter_arriba_from_config.py 17.0 KB May 28, 2026 1:15 PM
nextflow-bin/lib/filter_starfusions_from_config.py 19.8 KB May 28, 2026 1:15 PM
nextflow-bin/lib/flag_starfusions_blacklist.py 19.5 KB May 28, 2026 1:15 PM
nextflow-bin/migrate_containers_to_ecr.sh 11.2 KB May 28, 2026 1:15 PM
nextflow-bin/multiqc_column_order.py 6.7 KB May 28, 2026 1:15 PM
nextflow-bin/multiqc_general_stats_controls.py 2.7 KB May 28, 2026 1:15 PM
nextflow-bin/multiqc_general_stats_to_tsv.py 6.6 KB May 28, 2026 1:15 PM
nextflow-bin/multiqc_general_stats_txt_to_json.py 3.2 KB May 28, 2026 1:15 PM
nextflow-bin/predict_contamination.py 5.3 KB May 28, 2026 1:15 PM
nextflow-bin/preseq_to_multiqc.py 8.8 KB May 28, 2026 1:15 PM
nextflow-bin/rseqc_to_multiqc.py 3.7 KB May 28, 2026 1:15 PM
nextflow-bin/run_level_intermediate.py 12.6 KB May 28, 2026 1:15 PM
nextflow-bin/run_level_metrics.py 6.2 KB May 28, 2026 1:15 PM
nextflow-bin/run_ngscheckmate.sh 2.1 KB May 28, 2026 1:15 PM
nextflow-bin/seqtool_to_multiqc.py 17.6 KB May 28, 2026 1:15 PM
nextflow-bin/sort_fusion_vcf_mateid.py 10.6 KB May 28, 2026 1:15 PM
nextflow-bin/starfusion_filter_summary.txt 1.1 KB May 28, 2026 1:15 PM
nextflow-bin/vcf_collect.py 29.7 KB May 28, 2026 1:15 PM
ref_genome.dict 38.0 KB May 28, 2026 1:15 PM
ref_genome.fa 2.9 GB May 28, 2026 1:15 PM
ref_genome.fa.fai 6.3 KB May 28, 2026 1:15 PM