Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/0021ec3df12c03ae90070d267bad55/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/a9fd06049e94b2dbfec6482b2e5e5e/SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/0021ec3df12c03ae90070d267bad55/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory