Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/6421868871fd9d72321461fc3e51c4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/d693f32a4287a62015ac73026326de/OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/6421868871fd9d72321461fc3e51c4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/d693f32a4287a62015ac73026326de/OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1_R1.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory