Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/07b98615f8900bd00ca699fcc74a46/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/07b98615f8900bd00ca699fcc74a46/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/e7edcc8ef27ff0fd103c5201d3a94c/A549_FFPE_01_RNA_0001_B23LG7FLT4_2_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/e7edcc8ef27ff0fd103c5201d3a94c/A549_FFPE_01_RNA_0001_B23LG7FLT4_2_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory