Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/a98bc02c85b1ff4c389db32f49b975/EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/5646d8a3e63ac5549238673a646442/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/5646d8a3e63ac5549238673a646442/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/a98bc02c85b1ff4c389db32f49b975/EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory