Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/5dad36c70ea23c9ee142dbdb52c7e5/786-O_FFPE_RNA_0001_B23LG7FLT4_1_1.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/10809188e6e0be93d2817242dbd60f/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/10809188e6e0be93d2817242dbd60f/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/167fe0e4305ed6867db97ad83a0cfe/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusionreport.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/5dad36c70ea23c9ee142dbdb52c7e5/786-O_FFPE_RNA_0001_B23LG7FLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions 786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusionreport.tsv --gtf /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1 --shrink_introns --max_intron_length 1000
Done.
Execution Time = 0.12 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions 786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusionreport.tsv --gtf /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1 --shrink_introns --max_intron_length 1000
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/fusion_contigs.ok
Running: cp /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/cp_contigs_file_workdir
Running: cp /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/cp_gtf_file_workdir.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf > /tmp/nxf.cfy5G5uomt/cytoBand.txt
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf > /tmp/nxf.cfy5G5uomt/cytoBand.txt
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/cytoband.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed
-parsing GTF file: /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/merged_contig_gtf_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed.sorted.bed
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed.bedsort.ok
Running: bgzip -f /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed.sorted.bed
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed.bgzip.ok
Running: tabix -p bed /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed.sorted.bed.gz
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.bed.tabix.ok
Running: samtools faidx /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa
Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/merged_contig_fai.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf --CPU 8 --out_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_1.star --out_dir /tmp/nxf.cfy5G5uomt/fi_workdir --reads "/tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1_1.fastp.fastq.gz /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1_2.fastp.fastq.gz"
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1_1.fastp.fastq.gz /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
May 28 22:41:01 ..... started STAR run
May 28 22:41:01 ..... loading genome
May 28 22:42:47 ... generating Suffix Array index
May 28 22:46:36 ... completed Suffix Array index
May 28 22:46:36 ..... processing annotations GTF
May 28 22:46:36 ..... inserting junctions into the genome indices
May 28 22:47:38 ..... started mapping
May 28 23:53:43 ..... finished mapping
May 28 23:53:45 ..... started sorting BAM
May 28 23:53:47 ..... finished successfully
* Running CMD: mv Aligned.sortedByCoord.out.bam 786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index 786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.sortedByCoord.out.bam
Execution Time = 72.81 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf --CPU 8 --out_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_1.star --out_dir /tmp/nxf.cfy5G5uomt/fi_workdir --reads "/tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1_1.fastp.fastq.gz /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1_2.fastp.fastq.gz"
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/run_STAR.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam --remove_dups
23:54:05 : INFO : Done.
Execution Time = 0.25 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam --remove_dups
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/mark_dup_reads.ok
Running: samtools index /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam
Execution Time = 0.03 minutes. CMD: samtools index /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/mark_dups_reads.index.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
-parsing GTF file: /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf
-parsing /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam
[10000]
[20000]
[30000]
[40000]
[50000]
[60000]
[70000]
[80000]
[90000]
[100000]
[110000]
[120000]
[130000]
[140000]
[150000]
[160000]
[170000]
[180000]
[190000]
[200000]
[210000]
[220000]
[230000]
[240000]
[250000]
[260000]
[270000]
[280000]
[290000]
[300000]
[310000]
[320000]
[330000]
[340000]
[350000]
[360000]
[370000]
[380000]
[390000]
[400000]
[410000]
[420000]
[430000]
[440000]
[450000]
[460000]
[470000]
[480000]
[490000]
[500000]
[510000]
[520000]
[530000]
[540000]
[550000]
[560000]
[570000]
[580000]
[590000]
[600000]
[610000]
[620000]
[630000]
[640000]
[650000]
[660000]
[670000]
[680000]
[690000]
[700000]
[710000]
[720000]
[730000]
[740000]
[750000]
[760000]
[770000]
[780000]
[790000]
[800000]
[810000]
[820000]
[830000]
[840000]
[850000]
[860000]
[870000]
[880000]
[890000]
[900000]
[910000]
[920000]
[930000]
[940000]
[950000]
[960000]
[970000]
[980000]
[990000]
[1000000]
[1010000]
[1020000]
[1030000]
[1040000]
[1050000]
[1060000]
[1070000]
[1080000]
[1090000]
[1100000]
[1110000]
[1120000]
[1130000]
[1140000]
[1150000]
[1160000]
[1170000]
[1180000]
[1190000]
[1200000]
[1210000]
[1220000]
[1230000]
[1240000]
[1250000]
[1260000]
[1270000]
[1280000]
[1290000]
[1300000]
[1310000]
[1320000]
[1330000]
[1340000]
[1350000]
[1360000]
[1370000]
[1380000]
[1390000]
[1400000]
[1410000]
[1420000]
[1430000]
[1440000]
[1450000]
[1460000]
[1470000]
[1480000]
[1490000]
[1500000]
[1510000]
[1520000]
[1530000]
[1540000]
[1550000]
[1560000]
[1570000]
[1580000]
[1590000]
[1600000]
[1610000]
[1620000]
[1630000]
[1640000]
[1650000]
[1660000]
[1670000]
[1680000]
[1690000]
[1700000]
[1710000]
[1720000]
[1730000]
[1740000]
[1750000]
[1760000]
[1770000]
[1780000]
[1790000]
[1800000]
[1810000]
[1820000]
[1830000]
[1840000]
[1850000]
[1860000]
[1870000]
[1880000]
[1890000]
[1900000]
[1910000]
[1920000]
[1930000]
[1940000]
[1950000]
[1960000]
[1970000]
[1980000]
[1990000]
[2000000]
[2010000]
[2020000]
[2030000]
[2040000]
[2050000]
[2060000]
[2070000]
[2080000]
[2090000]
[2100000]
[2110000]
[2120000]
[2130000]
[2140000]
[2150000]
[2160000]
[2170000]
[2180000]
[2190000]
[2200000]
[2210000]
[2220000]
[2230000]
[2240000]
[2250000]
[2260000]
[2270000]
[2280000]
[2290000]
[2300000]
[2310000]
[2320000]
[2330000]
[2340000]
[2350000]
[2360000]
[2370000]
[2380000]
[2390000]
[2400000]
[2410000]
[2420000]
[2430000]
[2440000]
[2450000]
[2460000]
[2470000]
[2480000]
[2490000]
[2500000]
[2510000]
[2520000] -done parsing /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 12,
'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 26,
'exons hit < 2' => 24,
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 12,
'small anchor length' => 256,
'num genes matched < 2' => 17,
'low complexity anchor region' => 4,
' ** passed ** ' => 43517,
'seq-similar region overlap' => 9,
'per_id < 96' => 14652,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 491,
'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 2,
'excessive soft clipping' => 16345,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 12
};
-writing fusion junction support info.
Execution Time = 1.42 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
-outputting the spanning read info: /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000] -fusion SPANNING read extraction for scaff: AC008969.1--SMARCA4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000] -fusion SPANNING read extraction for scaff: AL391557.1--SPAG17
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000] -fusion SPANNING read extraction for scaff: ARHGEF3--RRP9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000] -fusion SPANNING read extraction for scaff: ATAD2B--KLHL29
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000] -fusion SPANNING read extraction for scaff: BNC2--AL358117.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000] -fusion SPANNING read extraction for scaff: CENPU--ENPP6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000] -fusion SPANNING read extraction for scaff: DHX38--AMPD1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000] -fusion SPANNING read extraction for scaff: GUSB--NAIP
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000] -fusion SPANNING read extraction for scaff: HIF1A--SNAPC1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000] -fusion SPANNING read extraction for scaff: HMGB3P23--ACO1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000]
[612000]
[613000]
[614000]
[615000]
[616000]
[617000]
[618000]
[619000]
[620000]
[621000]
[622000]
[623000]
[624000]
[625000]
[626000]
[627000]
[628000]
[629000]
[630000]
[631000]
[632000]
[633000]
[634000]
[635000]
[636000]
[637000]
[638000]
[639000]
[640000]
[641000]
[642000]
[643000]
[644000]
[645000]
[646000]
[647000]
[648000]
[649000]
[650000]
[651000]
[652000]
[653000]
[654000]
[655000]
[656000]
[657000]
[658000]
[659000]
[660000]
[661000]
[662000]
[663000]
[664000]
[665000]
[666000]
[667000]
[668000]
[669000]
[670000]
[671000]
[672000]
[673000]
[674000]
[675000]
[676000]
[677000]
[678000]
[679000]
[680000]
[681000]
[682000]
[683000]
[684000]
[685000]
[686000]
[687000]
[688000]
[689000]
[690000]
[691000]
[692000]
[693000]
[694000]
[695000]
[696000]
[697000]
[698000]
[699000]
[700000]
[701000]
[702000]
[703000]
[704000]
[705000]
[706000]
[707000]
[708000]
[709000]
[710000]
[711000]
[712000]
[713000]
[714000]
[715000]
[716000]
[717000]
[718000]
[719000]
[720000]
[721000]
[722000]
[723000]
[724000]
[725000]
[726000]
[727000]
[728000]
[729000]
[730000]
[731000]
[732000]
[733000]
[734000]
[735000]
[736000]
[737000]
[738000]
[739000]
[740000]
[741000]
[742000]
[743000]
[744000]
[745000]
[746000]
[747000]
[748000]
[749000]
[750000]
[751000]
[752000]
[753000]
[754000]
[755000]
[756000]
[757000]
[758000]
[759000]
[760000]
[761000]
[762000]
[763000]
[764000]
[765000]
[766000]
[767000]
[768000]
[769000]
[770000]
[771000]
[772000]
[773000]
[774000]
[775000]
[776000]
[777000]
[778000]
[779000]
[780000]
[781000]
[782000]
[783000]
[784000]
[785000]
[786000]
[787000]
[788000]
[789000]
[790000]
[791000]
[792000]
[793000]
[794000]
[795000]
[796000]
[797000]
[798000]
[799000]
[800000] -fusion SPANNING read extraction for scaff: LMNA--MEX3A
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000] -fusion SPANNING read extraction for scaff: LRP1B--AC078882.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000] -fusion SPANNING read extraction for scaff: MB21D2--FGF12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000] -fusion SPANNING read extraction for scaff: RNA5SP281--ACO1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000] -fusion SPANNING read extraction for scaff: RNA5SP56--SPAG17
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000] -fusion SPANNING read extraction for scaff: TMED7--TICAM2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000] -fusion SPANNING read extraction for scaff: ZKSCAN7--KIF15
-filtered reads reasons: $VAR1 = {
'lacks exon overlap' => 31849,
'seq similar region alignment' => 32589
};
Execution Time = 4.03 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/coalesce_junc_n_span.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj
EM: Starting log likelihood: -8471.129082
EM: Round [1] log likelihood: -8464.273431
EM: Round [2] log likelihood: -8464.266906
EM: Round [3] log likelihood: -8464.262965
EM: Round [4] log likelihood: -8464.259042
EM: Round [5] log likelihood: -8464.255137
EM: Round [6] log likelihood: -8464.251248
EM: Round [7] log likelihood: -8464.247377
EM: Round [8] log likelihood: -8464.243522
EM: Round [9] log likelihood: -8464.239683
EM: Round [10] log likelihood: -8464.235861
EM: Round [11] log likelihood: -8464.232055
EM: Round [12] log likelihood: -8464.228265
EM: Round [13] log likelihood: -8464.224491
EM: Round [14] log likelihood: -8464.220733
EM: Round [15] log likelihood: -8464.216991
EM: Round [16] log likelihood: -8464.213264
EM: Round [17] log likelihood: -8464.209553
EM: Round [18] log likelihood: -8464.205857
EM: Round [19] log likelihood: -8464.202177
EM: Round [20] log likelihood: -8464.198512
EM: Round [21] log likelihood: -8464.194861
EM: Round [22] log likelihood: -8464.191226
EM: Round [23] log likelihood: -8464.187605
EM: Round [24] log likelihood: -8464.183999
EM: Round [25] log likelihood: -8464.180407
EM: Round [26] log likelihood: -8464.176830
EM: Round [27] log likelihood: -8464.173267
EM: Round [28] log likelihood: -8464.169719
EM: Round [29] log likelihood: -8464.166184
EM: Round [30] log likelihood: -8464.162664
EM: Round [31] log likelihood: -8464.159157
EM: Round [32] log likelihood: -8464.155665
EM: Round [33] log likelihood: -8464.152186
EM: Round [34] log likelihood: -8464.148720
EM: Round [35] log likelihood: -8464.145268
EM: Round [36] log likelihood: -8464.141830
EM: Round [37] log likelihood: -8464.138405
EM: Round [38] log likelihood: -8464.134993
EM: Round [39] log likelihood: -8464.131594
EM: Round [40] log likelihood: -8464.128208
EM: Round [41] log likelihood: -8464.124835
EM: Round [42] log likelihood: -8464.121475
EM: Round [43] log likelihood: -8464.118127
EM: Round [44] log likelihood: -8464.114793
EM: Round [45] log likelihood: -8464.111470
EM: Round [46] log likelihood: -8464.108161
EM: Round [47] log likelihood: -8464.104863
EM: Round [48] log likelihood: -8464.101578
EM: Round [49] log likelihood: -8464.098306
EM: Round [50] log likelihood: -8464.095045
EM: Round [51] log likelihood: -8464.091796
EM: Round [52] log likelihood: -8464.088560
EM: Round [53] log likelihood: -8464.085335
EM: Round [54] log likelihood: -8464.082122
EM: Round [55] log likelihood: -8464.078920
EM: Round [56] log likelihood: -8464.075731
EM: Round [57] log likelihood: -8464.072553
EM: Round [58] log likelihood: -8464.069386
EM: Round [59] log likelihood: -8464.066231
EM: Round [60] log likelihood: -8464.063087
EM: Round [61] log likelihood: -8464.059954
EM: Round [62] log likelihood: -8464.056832
EM: Round [63] log likelihood: -8464.053722
EM: Round [64] log likelihood: -8464.050623
EM: Round [65] log likelihood: -8464.047534
EM: Round [66] log likelihood: -8464.044457
EM: Round [67] log likelihood: -8464.041390
EM: Round [68] log likelihood: -8464.038334
EM: Round [69] log likelihood: -8464.035288
EM: Round [70] log likelihood: -8464.032254
EM: Round [71] log likelihood: -8464.029229
EM: Round [72] log likelihood: -8464.026215
EM: Round [73] log likelihood: -8464.023212
EM: Round [74] log likelihood: -8464.020219
EM: Round [75] log likelihood: -8464.017236
EM: Round [76] log likelihood: -8464.014263
EM: Round [77] log likelihood: -8464.011301
EM: Round [78] log likelihood: -8464.008348
EM: Round [79] log likelihood: -8464.005406
EM: Round [80] log likelihood: -8464.002473
EM: Round [81] log likelihood: -8463.999551
EM: Round [82] log likelihood: -8463.996638
EM: Round [83] log likelihood: -8463.993735
EM: Round [84] log likelihood: -8463.990841
EM: Round [85] log likelihood: -8463.987958
EM: Round [86] log likelihood: -8463.985083
EM: Round [87] log likelihood: -8463.982219
EM: Round [88] log likelihood: -8463.979363
EM: Round [89] log likelihood: -8463.976518
EM: Round [90] log likelihood: -8463.973681
EM: Round [91] log likelihood: -8463.970854
EM: Round [92] log likelihood: -8463.968036
EM: Round [93] log likelihood: -8463.965227
EM: Round [94] log likelihood: -8463.962427
EM: Round [95] log likelihood: -8463.959636
EM: Round [96] log likelihood: -8463.956855
EM: Round [97] log likelihood: -8463.954082
EM: Round [98] log likelihood: -8463.951318
EM: Round [99] log likelihood: -8463.948563
EM: Round [100] log likelihood: -8463.945817
EM: Round [101] log likelihood: -8463.943079
EM: Round [102] log likelihood: -8463.940351
EM: Round [103] log likelihood: -8463.937630
EM: Round [104] log likelihood: -8463.934919
EM: Round [105] log likelihood: -8463.932216
EM: Round [106] log likelihood: -8463.929521
EM: Round [107] log likelihood: -8463.926835
EM: Round [108] log likelihood: -8463.924157
EM: Round [109] log likelihood: -8463.921488
EM: Round [110] log likelihood: -8463.918827
EM: Round [111] log likelihood: -8463.916174
EM: Round [112] log likelihood: -8463.913529
EM: Round [113] log likelihood: -8463.910893
EM: Round [114] log likelihood: -8463.908264
EM: Round [115] log likelihood: -8463.905644
EM: Round [116] log likelihood: -8463.903031
EM: Round [117] log likelihood: -8463.900427
EM: Round [118] log likelihood: -8463.897831
EM: Round [119] log likelihood: -8463.895242
EM: Round [120] log likelihood: -8463.892661
EM: Round [121] log likelihood: -8463.890088
EM: Round [122] log likelihood: -8463.887523
EM: Round [123] log likelihood: -8463.884965
EM: Round [124] log likelihood: -8463.882415
EM: Round [125] log likelihood: -8463.879873
EM: Round [126] log likelihood: -8463.877338
EM: Round [127] log likelihood: -8463.874811
EM: Round [128] log likelihood: -8463.872291
EM: Round [129] log likelihood: -8463.869779
EM: Round [130] log likelihood: -8463.867274
EM: Round [131] log likelihood: -8463.864777
EM: Round [132] log likelihood: -8463.862287
EM: Round [133] log likelihood: -8463.859804
EM: Round [134] log likelihood: -8463.857328
EM: Round [135] log likelihood: -8463.854860
EM: Round [136] log likelihood: -8463.852399
EM: Round [137] log likelihood: -8463.849945
EM: Round [138] log likelihood: -8463.847498
EM: Round [139] log likelihood: -8463.845058
EM: Round [140] log likelihood: -8463.842625
EM: Round [141] log likelihood: -8463.840199
EM: Round [142] log likelihood: -8463.837780
EM: Round [143] log likelihood: -8463.835368
EM: Round [144] log likelihood: -8463.832962
EM: Round [145] log likelihood: -8463.830564
EM: Round [146] log likelihood: -8463.828172
EM: Round [147] log likelihood: -8463.825788
EM: Round [148] log likelihood: -8463.823410
EM: Round [149] log likelihood: -8463.821038
EM: Round [150] log likelihood: -8463.818673
EM: Round [151] log likelihood: -8463.816315
EM: Round [152] log likelihood: -8463.813964
EM: Round [153] log likelihood: -8463.811619
EM: Round [154] log likelihood: -8463.809280
EM: Round [155] log likelihood: -8463.806948
EM: Round [156] log likelihood: -8463.804623
EM: Round [157] log likelihood: -8463.802304
EM: Round [158] log likelihood: -8463.799991
EM: Round [159] log likelihood: -8463.797685
EM: Round [160] log likelihood: -8463.795385
EM: Round [161] log likelihood: -8463.793091
EM: Round [162] log likelihood: -8463.790804
EM: Round [163] log likelihood: -8463.788523
EM: Round [164] log likelihood: -8463.786248
EM: Round [165] log likelihood: -8463.783979
EM: Round [166] log likelihood: -8463.781716
EM: Round [167] log likelihood: -8463.779460
EM: Round [168] log likelihood: -8463.777209
EM: Round [169] log likelihood: -8463.774965
EM: Round [170] log likelihood: -8463.772726
EM: Round [171] log likelihood: -8463.770494
EM: Round [172] log likelihood: -8463.768268
EM: Round [173] log likelihood: -8463.766047
EM: Round [174] log likelihood: -8463.763832
EM: Round [175] log likelihood: -8463.761624
EM: Round [176] log likelihood: -8463.759421
EM: Round [177] log likelihood: -8463.757224
EM: Round [178] log likelihood: -8463.755032
EM: Round [179] log likelihood: -8463.752847
EM: Round [180] log likelihood: -8463.750667
EM: Round [181] log likelihood: -8463.748493
EM: Round [182] log likelihood: -8463.746325
EM: Round [183] log likelihood: -8463.744162
EM: Round [184] log likelihood: -8463.742005
EM: Round [185] log likelihood: -8463.739853
EM: Round [186] log likelihood: -8463.737707
EM: Round [187] log likelihood: -8463.735567
EM: Round [188] log likelihood: -8463.733432
EM: Round [189] log likelihood: -8463.731303
EM: Round [190] log likelihood: -8463.729179
EM: Round [191] log likelihood: -8463.727060
EM: Round [192] log likelihood: -8463.724947
EM: Round [193] log likelihood: -8463.722839
EM: Round [194] log likelihood: -8463.720737
EM: Round [195] log likelihood: -8463.718640
EM: Round [196] log likelihood: -8463.716548
EM: Round [197] log likelihood: -8463.714462
EM: Round [198] log likelihood: -8463.712381
EM: Round [199] log likelihood: -8463.710305
EM: Round [200] log likelihood: -8463.708235
EM: Round [201] log likelihood: -8463.706169
EM: Round [202] log likelihood: -8463.704109
EM: Round [203] log likelihood: -8463.702054
EM: Round [204] log likelihood: -8463.700004
EM: Round [205] log likelihood: -8463.697959
EM: Round [206] log likelihood: -8463.695919
EM: Round [207] log likelihood: -8463.693884
EM: Round [208] log likelihood: -8463.691855
EM: Round [209] log likelihood: -8463.689830
EM: Round [210] log likelihood: -8463.687810
EM: Round [211] log likelihood: -8463.685795
EM: Round [212] log likelihood: -8463.683786
EM: Round [213] log likelihood: -8463.681781
EM: Round [214] log likelihood: -8463.679781
EM: Round [215] log likelihood: -8463.677786
EM: Round [216] log likelihood: -8463.675795
EM: Round [217] log likelihood: -8463.673810
EM: Round [218] log likelihood: -8463.671829
EM: Round [219] log likelihood: -8463.669854
EM: Round [220] log likelihood: -8463.667883
EM: Round [221] log likelihood: -8463.665916
EM: Round [222] log likelihood: -8463.663955
EM: Round [223] log likelihood: -8463.661998
EM: Round [224] log likelihood: -8463.660046
EM: Round [225] log likelihood: -8463.658098
EM: Round [226] log likelihood: -8463.656155
EM: Round [227] log likelihood: -8463.654217
EM: Round [228] log likelihood: -8463.652284
EM: Round [229] log likelihood: -8463.650355
EM: Round [230] log likelihood: -8463.648430
EM: Round [231] log likelihood: -8463.646510
EM: Round [232] log likelihood: -8463.644595
EM: Round [233] log likelihood: -8463.642684
EM: Round [234] log likelihood: -8463.640778
EM: Round [235] log likelihood: -8463.638876
EM: Round [236] log likelihood: -8463.636978
EM: Round [237] log likelihood: -8463.635085
EM: Round [238] log likelihood: -8463.633197
EM: Round [239] log likelihood: -8463.631313
EM: Round [240] log likelihood: -8463.629433
EM: Round [241] log likelihood: -8463.627557
EM: Round [242] log likelihood: -8463.625686
EM: Round [243] log likelihood: -8463.623819
EM: Round [244] log likelihood: -8463.621957
EM: Round [245] log likelihood: -8463.620099
EM: Round [246] log likelihood: -8463.618245
EM: Round [247] log likelihood: -8463.616395
EM: Round [248] log likelihood: -8463.614550
EM: Round [249] log likelihood: -8463.612709
EM: Round [250] log likelihood: -8463.610872
EM: Round [251] log likelihood: -8463.609039
EM: Round [252] log likelihood: -8463.607210
EM: Round [253] log likelihood: -8463.605386
EM: Round [254] log likelihood: -8463.603565
EM: Round [255] log likelihood: -8463.601749
EM: Round [256] log likelihood: -8463.599937
EM: Round [257] log likelihood: -8463.598129
EM: Round [258] log likelihood: -8463.596325
EM: Round [259] log likelihood: -8463.594525
EM: Round [260] log likelihood: -8463.592729
EM: Round [261] log likelihood: -8463.590937
EM: Round [262] log likelihood: -8463.589149
EM: Round [263] log likelihood: -8463.587365
EM: Round [264] log likelihood: -8463.585585
EM: Round [265] log likelihood: -8463.583809
EM: Round [266] log likelihood: -8463.582037
EM: Round [267] log likelihood: -8463.580269
EM: Round [268] log likelihood: -8463.578504
EM: Round [269] log likelihood: -8463.576744
EM: Round [270] log likelihood: -8463.574987
EM: Round [271] log likelihood: -8463.573235
EM: Round [272] log likelihood: -8463.571486
EM: Round [273] log likelihood: -8463.569741
EM: Round [274] log likelihood: -8463.568000
EM: Round [275] log likelihood: -8463.566262
EM: Round [276] log likelihood: -8463.564529
EM: Round [277] log likelihood: -8463.562799
EM: Round [278] log likelihood: -8463.561073
EM: Round [279] log likelihood: -8463.559351
EM: Round [280] log likelihood: -8463.557632
EM: Round [281] log likelihood: -8463.555917
EM: Round [282] log likelihood: -8463.554206
EM: Round [283] log likelihood: -8463.552499
EM: Round [284] log likelihood: -8463.550795
EM: Round [285] log likelihood: -8463.549094
EM: Round [286] log likelihood: -8463.547398
EM: Round [287] log likelihood: -8463.545705
EM: Round [288] log likelihood: -8463.544016
EM: Round [289] log likelihood: -8463.542330
EM: Round [290] log likelihood: -8463.540648
EM: Round [291] log likelihood: -8463.538969
EM: Round [292] log likelihood: -8463.537294
EM: Round [293] log likelihood: -8463.535623
EM: Round [294] log likelihood: -8463.533955
EM: Round [295] log likelihood: -8463.532291
EM: Round [296] log likelihood: -8463.530630
EM: Round [297] log likelihood: -8463.528972
EM: Round [298] log likelihood: -8463.527318
EM: Round [299] log likelihood: -8463.525668
EM: Round [300] log likelihood: -8463.524021
EM: Round [301] log likelihood: -8463.522377
EM: Round [302] log likelihood: -8463.520737
EM: Round [303] log likelihood: -8463.519100
EM: Round [304] log likelihood: -8463.517467
EM: Round [305] log likelihood: -8463.515837
EM: Round [306] log likelihood: -8463.514210
EM: Round [307] log likelihood: -8463.512587
EM: Round [308] log likelihood: -8463.510967
EM: Round [309] log likelihood: -8463.509351
EM: Round [310] log likelihood: -8463.507738
EM: Round [311] log likelihood: -8463.506128
EM: Round [312] log likelihood: -8463.504521
EM: Round [313] log likelihood: -8463.502918
EM: Round [314] log likelihood: -8463.501318
EM: Round [315] log likelihood: -8463.499721
EM: Round [316] log likelihood: -8463.498128
EM: Round [317] log likelihood: -8463.496537
EM: Round [318] log likelihood: -8463.494950
EM: Round [319] log likelihood: -8463.493366
EM: Round [320] log likelihood: -8463.491786
EM: Round [321] log likelihood: -8463.490208
EM: Round [322] log likelihood: -8463.488634
EM: Round [323] log likelihood: -8463.487063
EM: Round [324] log likelihood: -8463.485495
EM: Round [325] log likelihood: -8463.483930
EM: Round [326] log likelihood: -8463.482369
EM: Round [327] log likelihood: -8463.480810
EM: Round [328] log likelihood: -8463.479255
EM: Round [329] log likelihood: -8463.477703
EM: Round [330] log likelihood: -8463.476154
EM: Round [331] log likelihood: -8463.474608
EM: Round [332] log likelihood: -8463.473065
EM: Round [333] log likelihood: -8463.471525
EM: Round [334] log likelihood: -8463.469988
EM: Round [335] log likelihood: -8463.468454
EM: Round [336] log likelihood: -8463.466923
EM: Round [337] log likelihood: -8463.465395
EM: Round [338] log likelihood: -8463.463870
EM: Round [339] log likelihood: -8463.462349
EM: Round [340] log likelihood: -8463.460830
EM: Round [341] log likelihood: -8463.459314
EM: Round [342] log likelihood: -8463.457801
EM: Round [343] log likelihood: -8463.456291
EM: Round [344] log likelihood: -8463.454784
EM: Round [345] log likelihood: -8463.453280
EM: Round [346] log likelihood: -8463.451779
EM: Round [347] log likelihood: -8463.450281
EM: Round [348] log likelihood: -8463.448786
EM: Round [349] log likelihood: -8463.447293
EM: Round [350] log likelihood: -8463.445804
EM: Round [351] log likelihood: -8463.444317
EM: Round [352] log likelihood: -8463.442833
EM: Round [353] log likelihood: -8463.441352
EM: Round [354] log likelihood: -8463.439874
EM: Round [355] log likelihood: -8463.438399
EM: Round [356] log likelihood: -8463.436927
EM: Round [357] log likelihood: -8463.435457
EM: Round [358] log likelihood: -8463.433990
EM: Round [359] log likelihood: -8463.432526
EM: Round [360] log likelihood: -8463.431065
EM: Round [361] log likelihood: -8463.429607
EM: Round [362] log likelihood: -8463.428151
EM: Round [363] log likelihood: -8463.426698
EM: Round [364] log likelihood: -8463.425248
EM: Round [365] log likelihood: -8463.423801
EM: Round [366] log likelihood: -8463.422356
EM: Round [367] log likelihood: -8463.420914
EM: Round [368] log likelihood: -8463.419475
EM: Round [369] log likelihood: -8463.418038
EM: Round [370] log likelihood: -8463.416605
EM: Round [371] log likelihood: -8463.415174
EM: Round [372] log likelihood: -8463.413745
EM: Round [373] log likelihood: -8463.412319
EM: Round [374] log likelihood: -8463.410896
EM: Round [375] log likelihood: -8463.409476
EM: Round [376] log likelihood: -8463.408058
EM: Round [377] log likelihood: -8463.406643
EM: Round [378] log likelihood: -8463.405230
EM: Round [379] log likelihood: -8463.403820
EM: Round [380] log likelihood: -8463.402413
EM: Round [381] log likelihood: -8463.401008
EM: Round [382] log likelihood: -8463.399606
EM: Round [383] log likelihood: -8463.398207
EM: Round [384] log likelihood: -8463.396810
EM: Round [385] log likelihood: -8463.395415
EM: Round [386] log likelihood: -8463.394024
EM: Round [387] log likelihood: -8463.392634
EM: Round [388] log likelihood: -8463.391248
EM: Round [389] log likelihood: -8463.389864
EM: Round [390] log likelihood: -8463.388482
EM: Round [391] log likelihood: -8463.387103
EM: Round [392] log likelihood: -8463.385726
EM: Round [393] log likelihood: -8463.384352
EM: Round [394] log likelihood: -8463.382980
EM: Round [395] log likelihood: -8463.381611
EM: Round [396] log likelihood: -8463.380244
EM: Round [397] log likelihood: -8463.378880
EM: Round [398] log likelihood: -8463.377519
EM: Round [399] log likelihood: -8463.376159
EM: Round [400] log likelihood: -8463.374802
EM: Round [401] log likelihood: -8463.373448
EM: Round [402] log likelihood: -8463.372096
EM: Round [403] log likelihood: -8463.370747
EM: Round [404] log likelihood: -8463.369399
EM: Round [405] log likelihood: -8463.368055
EM: Round [406] log likelihood: -8463.366712
EM: Round [407] log likelihood: -8463.365373
EM: Round [408] log likelihood: -8463.364035
EM: Round [409] log likelihood: -8463.362700
EM: Round [410] log likelihood: -8463.361367
EM: Round [411] log likelihood: -8463.360037
EM: Round [412] log likelihood: -8463.358709
EM: Round [413] log likelihood: -8463.357383
EM: Round [414] log likelihood: -8463.356060
EM: Round [415] log likelihood: -8463.354739
EM: Round [416] log likelihood: -8463.353420
EM: Round [417] log likelihood: -8463.352104
EM: Round [418] log likelihood: -8463.350790
EM: Round [419] log likelihood: -8463.349478
EM: Round [420] log likelihood: -8463.348168
EM: Round [421] log likelihood: -8463.346861
EM: Round [422] log likelihood: -8463.345556
EM: Round [423] log likelihood: -8463.344254
EM: Round [424] log likelihood: -8463.342954
EM: Round [425] log likelihood: -8463.341655
EM: Round [426] log likelihood: -8463.340360
EM: Round [427] log likelihood: -8463.339066
EM: Round [428] log likelihood: -8463.337775
EM: Round [429] log likelihood: -8463.336486
EM: Round [430] log likelihood: -8463.335199
EM: Round [431] log likelihood: -8463.333914
EM: Round [432] log likelihood: -8463.332632
EM: Round [433] log likelihood: -8463.331352
EM: Round [434] log likelihood: -8463.330074
EM: Round [435] log likelihood: -8463.328798
EM: Round [436] log likelihood: -8463.327525
EM: Round [437] log likelihood: -8463.326253
EM: Round [438] log likelihood: -8463.324984
EM: Round [439] log likelihood: -8463.323717
EM: Round [440] log likelihood: -8463.322452
EM: Round [441] log likelihood: -8463.321189
EM: Round [442] log likelihood: -8463.319929
EM: Round [443] log likelihood: -8463.318670
EM: Round [444] log likelihood: -8463.317414
EM: Round [445] log likelihood: -8463.316160
EM: Round [446] log likelihood: -8463.314908
EM: Round [447] log likelihood: -8463.313658
EM: Round [448] log likelihood: -8463.312410
EM: Round [449] log likelihood: -8463.311165
EM: Round [450] log likelihood: -8463.309921
EM: Round [451] log likelihood: -8463.308680
EM: Round [452] log likelihood: -8463.307440
EM: Round [453] log likelihood: -8463.306203
EM: Round [454] log likelihood: -8463.304968
EM: Round [455] log likelihood: -8463.303735
EM: Round [456] log likelihood: -8463.302503
EM: Round [457] log likelihood: -8463.301274
EM: Round [458] log likelihood: -8463.300047
EM: Round [459] log likelihood: -8463.298823
EM: Round [460] log likelihood: -8463.297600
EM: Round [461] log likelihood: -8463.296379
EM: Round [462] log likelihood: -8463.295160
EM: Round [463] log likelihood: -8463.293943
EM: Round [464] log likelihood: -8463.292728
EM: Round [465] log likelihood: -8463.291516
EM: Round [466] log likelihood: -8463.290305
EM: Round [467] log likelihood: -8463.289096
EM: Round [468] log likelihood: -8463.287889
EM: Round [469] log likelihood: -8463.286685
EM: Round [470] log likelihood: -8463.285482
EM: Round [471] log likelihood: -8463.284281
EM: Round [472] log likelihood: -8463.283082
EM: Round [473] log likelihood: -8463.281885
EM: Round [474] log likelihood: -8463.280691
EM: Round [475] log likelihood: -8463.279498
EM: Round [476] log likelihood: -8463.278307
EM: Round [477] log likelihood: -8463.277118
EM: Round [478] log likelihood: -8463.275931
EM: Round [479] log likelihood: -8463.274745
EM: Round [480] log likelihood: -8463.273562
EM: Round [481] log likelihood: -8463.272381
EM: Round [482] log likelihood: -8463.271201
EM: Round [483] log likelihood: -8463.270024
EM: Round [484] log likelihood: -8463.268848
EM: Round [485] log likelihood: -8463.267675
EM: Round [486] log likelihood: -8463.266503
EM: Round [487] log likelihood: -8463.265333
EM: Round [488] log likelihood: -8463.264165
EM: Round [489] log likelihood: -8463.262999
EM: Round [490] log likelihood: -8463.261835
EM: Round [491] log likelihood: -8463.260672
EM: Round [492] log likelihood: -8463.259512
EM: Round [493] log likelihood: -8463.258353
EM: Round [494] log likelihood: -8463.257196
EM: Round [495] log likelihood: -8463.256041
EM: Round [496] log likelihood: -8463.254888
EM: Round [497] log likelihood: -8463.253737
EM: Round [498] log likelihood: -8463.252588
EM: Round [499] log likelihood: -8463.251440
EM: Round [500] log likelihood: -8463.250294
EM: Round [501] log likelihood: -8463.249150
EM: Round [502] log likelihood: -8463.248008
EM: Round [503] log likelihood: -8463.246868
EM: Round [504] log likelihood: -8463.245729
EM: Round [505] log likelihood: -8463.244593
EM: Round [506] log likelihood: -8463.243458
EM: Round [507] log likelihood: -8463.242324
EM: Round [508] log likelihood: -8463.241193
EM: Round [509] log likelihood: -8463.240064
EM: Round [510] log likelihood: -8463.238936
EM: Round [511] log likelihood: -8463.237810
EM: Round [512] log likelihood: -8463.236685
EM: Round [513] log likelihood: -8463.235563
EM: Round [514] log likelihood: -8463.234442
EM: Round [515] log likelihood: -8463.233323
EM: Round [516] log likelihood: -8463.232206
EM: Round [517] log likelihood: -8463.231090
EM: Round [518] log likelihood: -8463.229977
EM: Round [519] log likelihood: -8463.228865
EM: Round [520] log likelihood: -8463.227754
EM: Round [521] log likelihood: -8463.226646
EM: Round [522] log likelihood: -8463.225539
EM: Round [523] log likelihood: -8463.224434
EM: Round [524] log likelihood: -8463.223330
EM: Round [525] log likelihood: -8463.222229
EM: Round [526] log likelihood: -8463.221129
EM: Round [527] log likelihood: -8463.220030
EM: Round [528] log likelihood: -8463.218934
EM: Round [529] log likelihood: -8463.217839
EM: Round [530] log likelihood: -8463.216745
EM: Round [531] log likelihood: -8463.215654
EM: Round [532] log likelihood: -8463.214564
EM: Round [533] log likelihood: -8463.213476
EM: Round [534] log likelihood: -8463.212389
EM: Round [535] log likelihood: -8463.211304
EM: Round [536] log likelihood: -8463.210221
EM: Round [537] log likelihood: -8463.209139
EM: Round [538] log likelihood: -8463.208059
EM: Round [539] log likelihood: -8463.206981
EM: Round [540] log likelihood: -8463.205904
EM: Round [541] log likelihood: -8463.204829
EM: Round [542] log likelihood: -8463.203756
EM: Round [543] log likelihood: -8463.202684
EM: Round [544] log likelihood: -8463.201614
EM: Round [545] log likelihood: -8463.200546
EM: Round [546] log likelihood: -8463.199479
EM: Round [547] log likelihood: -8463.198413
EM: Round [548] log likelihood: -8463.197350
EM: Round [549] log likelihood: -8463.196288
EM: Round [550] log likelihood: -8463.195227
EM: Round [551] log likelihood: -8463.194168
EM: Round [552] log likelihood: -8463.193111
EM: Round [553] log likelihood: -8463.192055
EM: Round [554] log likelihood: -8463.191001
EM: Round [555] log likelihood: -8463.189948
EM: Round [556] log likelihood: -8463.188897
EM: Round [557] log likelihood: -8463.187848
EM: Round [558] log likelihood: -8463.186800
EM: Round [559] log likelihood: -8463.185754
EM: Round [560] log likelihood: -8463.184709
EM: Round [561] log likelihood: -8463.183666
EM: Round [562] log likelihood: -8463.182624
EM: Round [563] log likelihood: -8463.181584
EM: Round [564] log likelihood: -8463.180546
EM: Round [565] log likelihood: -8463.179509
EM: Round [566] log likelihood: -8463.178473
EM: Round [567] log likelihood: -8463.177439
EM: Round [568] log likelihood: -8463.176407
EM: Round [569] log likelihood: -8463.175376
EM: Round [570] log likelihood: -8463.174346
EM: Round [571] log likelihood: -8463.173319
EM: Round [572] log likelihood: -8463.172292
EM: Round [573] log likelihood: -8463.171267
EM: Round [574] log likelihood: -8463.170244
EM: Round [575] log likelihood: -8463.169222
EM: Round [576] log likelihood: -8463.168202
EM: Round [577] log likelihood: -8463.167183
EM: Round [578] log likelihood: -8463.166166
EM: Round [579] log likelihood: -8463.165150
EM: Round [580] log likelihood: -8463.164135
EM: Round [581] log likelihood: -8463.163123
EM: Round [582] log likelihood: -8463.162111
EM: Round [583] log likelihood: -8463.161101
EM: Round [584] log likelihood: -8463.160093
EM: Round [585] log likelihood: -8463.159086
EM: Round [586] log likelihood: -8463.158080
EM: Round [587] log likelihood: -8463.157076
EM: Round [588] log likelihood: -8463.156073
EM: Round [589] log likelihood: -8463.155072
EM: Round [590] log likelihood: -8463.154072
EM: Round [591] log likelihood: -8463.153074
EM: Round [592] log likelihood: -8463.152077
EM: Round [593] log likelihood: -8463.151082
EM: Round [594] log likelihood: -8463.150088
EM: Round [595] log likelihood: -8463.149095
EM: Round [596] log likelihood: -8463.148104
EM: Round [597] log likelihood: -8463.147114
EM: Round [598] log likelihood: -8463.146126
EM: Round [599] log likelihood: -8463.145139
EM: Round [600] log likelihood: -8463.144153
EM: Round [601] log likelihood: -8463.143169
EM: Round [602] log likelihood: -8463.142186
EM: Round [603] log likelihood: -8463.141205
EM: Round [604] log likelihood: -8463.140225
EM: Round [605] log likelihood: -8463.139247
EM: Round [606] log likelihood: -8463.138270
EM: Round [607] log likelihood: -8463.137294
EM: Round [608] log likelihood: -8463.136320
EM: Round [609] log likelihood: -8463.135347
EM: Round [610] log likelihood: -8463.134375
EM: Round [611] log likelihood: -8463.133405
EM: Round [612] log likelihood: -8463.132436
EM: Round [613] log likelihood: -8463.131469
EM: Round [614] log likelihood: -8463.130502
EM: Round [615] log likelihood: -8463.129538
EM: Round [616] log likelihood: -8463.128574
EM: Round [617] log likelihood: -8463.127612
EM: Round [618] log likelihood: -8463.126652
EM: Round [619] log likelihood: -8463.125692
EM: Round [620] log likelihood: -8463.124734
EM: Round [621] log likelihood: -8463.123778
EM: Round [622] log likelihood: -8463.122822
EM: Round [623] log likelihood: -8463.121868
EM: Round [624] log likelihood: -8463.120916
EM: Round [625] log likelihood: -8463.119964
EM: Round [626] log likelihood: -8463.119014
EM: Round [627] log likelihood: -8463.118066
EM: Round [628] log likelihood: -8463.117118
EM: Round [629] log likelihood: -8463.116172
EM: Round [630] log likelihood: -8463.115228
EM: Round [631] log likelihood: -8463.114284
EM: Round [632] log likelihood: -8463.113342
EM: Round [633] log likelihood: -8463.112401
EM: Round [634] log likelihood: -8463.111462
EM: Round [635] log likelihood: -8463.110524
EM: Round [636] log likelihood: -8463.109587
EM: Round [637] log likelihood: -8463.108651
EM: Round [638] log likelihood: -8463.107717
EM: Round [639] log likelihood: -8463.106784
EM: Round [640] log likelihood: -8463.105852
EM: Round [641] log likelihood: -8463.104922
EM: Round [642] log likelihood: -8463.103993
EM: Round [643] log likelihood: -8463.103065
EM: Round [644] log likelihood: -8463.102138
EM: Round [645] log likelihood: -8463.101213
EM: Round [646] log likelihood: -8463.100289
EM: Round [647] log likelihood: -8463.099366
EM: Round [648] log likelihood: -8463.098444
EM: Round [649] log likelihood: -8463.097524
EM: Round [650] log likelihood: -8463.096605
EM: Round [651] log likelihood: -8463.095687
EM: Round [652] log likelihood: -8463.094771
EM: Round [653] log likelihood: -8463.093855
EM: Round [654] log likelihood: -8463.092941
EM: Round [655] log likelihood: -8463.092028
EM: Round [656] log likelihood: -8463.091117
EM: Round [657] log likelihood: -8463.090206
EM: Round [658] log likelihood: -8463.089297
EM: Round [659] log likelihood: -8463.088389
EM: Round [660] log likelihood: -8463.087483
EM: Round [661] log likelihood: -8463.086577
EM: Round [662] log likelihood: -8463.085673
EM: Round [663] log likelihood: -8463.084770
EM: Round [664] log likelihood: -8463.083868
EM: Round [665] log likelihood: -8463.082968
EM: Round [666] log likelihood: -8463.082068
EM: Round [667] log likelihood: -8463.081170
EM: Round [668] log likelihood: -8463.080273
EM: Round [669] log likelihood: -8463.079378
EM: Round [670] log likelihood: -8463.078483
EM: Round [671] log likelihood: -8463.077590
EM: Round [672] log likelihood: -8463.076697
EM: Round [673] log likelihood: -8463.075806
EM: Round [674] log likelihood: -8463.074917
EM: Round [675] log likelihood: -8463.074028
EM: Round [676] log likelihood: -8463.073141
EM: Round [677] log likelihood: -8463.072254
EM: Round [678] log likelihood: -8463.071369
EM: Round [679] log likelihood: -8463.070486
EM: Round [680] log likelihood: -8463.069603
EM: Round [681] log likelihood: -8463.068721
EM: Round [682] log likelihood: -8463.067841
EM: Round [683] log likelihood: -8463.066962
EM: Round [684] log likelihood: -8463.066084
EM: Round [685] log likelihood: -8463.065207
EM: Round [686] log likelihood: -8463.064331
EM: Round [687] log likelihood: -8463.063457
EM: Round [688] log likelihood: -8463.062583
EM: Round [689] log likelihood: -8463.061711
EM: Round [690] log likelihood: -8463.060840
EM: Round [691] log likelihood: -8463.059970
EM: Round [692] log likelihood: -8463.059101
EM: Round [693] log likelihood: -8463.058233
EM: Round [694] log likelihood: -8463.057367
EM: Round [695] log likelihood: -8463.056501
EM: Round [696] log likelihood: -8463.055637
EM: Round [697] log likelihood: -8463.054774
EM: Round [698] log likelihood: -8463.053912
EM: Round [699] log likelihood: -8463.053051
EM: Round [700] log likelihood: -8463.052191
EM: Round [701] log likelihood: -8463.051332
EM: Round [702] log likelihood: -8463.050475
EM: Round [703] log likelihood: -8463.049619
EM: Round [704] log likelihood: -8463.048763
EM: Round [705] log likelihood: -8463.047909
EM: Round [706] log likelihood: -8463.047056
EM: Round [707] log likelihood: -8463.046204
EM: Round [708] log likelihood: -8463.045353
EM: Round [709] log likelihood: -8463.044503
EM: Round [710] log likelihood: -8463.043655
EM: Round [711] log likelihood: -8463.042807
EM: Round [712] log likelihood: -8463.041960
EM: Round [713] log likelihood: -8463.041115
EM: Round [714] log likelihood: -8463.040271
EM: Round [715] log likelihood: -8463.039428
EM: Round [716] log likelihood: -8463.038585
EM: Round [717] log likelihood: -8463.037744
EM: Round [718] log likelihood: -8463.036904
EM: Round [719] log likelihood: -8463.036065
EM: Round [720] log likelihood: -8463.035228
EM: Round [721] log likelihood: -8463.034391
EM: Round [722] log likelihood: -8463.033555
EM: Round [723] log likelihood: -8463.032721
EM: Round [724] log likelihood: -8463.031887
EM: Round [725] log likelihood: -8463.031055
EM: Round [726] log likelihood: -8463.030223
EM: Round [727] log likelihood: -8463.029393
EM: Round [728] log likelihood: -8463.028564
EM: Round [729] log likelihood: -8463.027735
EM: Round [730] log likelihood: -8463.026908
EM: Round [731] log likelihood: -8463.026082
EM: Round [732] log likelihood: -8463.025257
EM: Round [733] log likelihood: -8463.024433
EM: Round [734] log likelihood: -8463.023610
EM: Round [735] log likelihood: -8463.022788
EM: Round [736] log likelihood: -8463.021967
EM: Round [737] log likelihood: -8463.021147
EM: Round [738] log likelihood: -8463.020328
EM: Round [739] log likelihood: -8463.019510
EM: Round [740] log likelihood: -8463.018694
EM: Round [741] log likelihood: -8463.017878
EM: Round [742] log likelihood: -8463.017063
EM: Round [743] log likelihood: -8463.016249
EM: Round [744] log likelihood: -8463.015437
EM: Round [745] log likelihood: -8463.014625
EM: Round [746] log likelihood: -8463.013814
EM: Round [747] log likelihood: -8463.013005
EM: Round [748] log likelihood: -8463.012196
EM: Round [749] log likelihood: -8463.011389
EM: Round [750] log likelihood: -8463.010582
EM: Round [751] log likelihood: -8463.009776
EM: Round [752] log likelihood: -8463.008972
EM: Round [753] log likelihood: -8463.008168
EM: Round [754] log likelihood: -8463.007366
EM: Round [755] log likelihood: -8463.006564
EM: Round [756] log likelihood: -8463.005764
EM: Round [757] log likelihood: -8463.004964
EM: Round [758] log likelihood: -8463.004165
EM: Round [759] log likelihood: -8463.003368
EM: Round [760] log likelihood: -8463.002571
EM: Round [761] log likelihood: -8463.001776
EM: Round [762] log likelihood: -8463.000981
EM: Round [763] log likelihood: -8463.000187
EM: Round [764] log likelihood: -8462.999395
EM: Round [765] log likelihood: -8462.998603
EM: Round [766] log likelihood: -8462.997812
EM: Round [767] log likelihood: -8462.997023
EM: Round [768] log likelihood: -8462.996234
EM: Round [769] log likelihood: -8462.995446
EM: Round [770] log likelihood: -8462.994659
EM: Round [771] log likelihood: -8462.993873
EM: Round [772] log likelihood: -8462.993089
EM: Round [773] log likelihood: -8462.992305
EM: Round [774] log likelihood: -8462.991522
EM: Round [775] log likelihood: -8462.990740
EM: Round [776] log likelihood: -8462.989959
EM: Round [777] log likelihood: -8462.989179
EM: Round [778] log likelihood: -8462.988399
EM: Round [779] log likelihood: -8462.987621
EM: Round [780] log likelihood: -8462.986844
EM: Round [781] log likelihood: -8462.986068
EM: Round [782] log likelihood: -8462.985292
EM: Round [783] log likelihood: -8462.984518
EM: Round [784] log likelihood: -8462.983745
EM: Round [785] log likelihood: -8462.982972
EM: Round [786] log likelihood: -8462.982201
EM: Round [787] log likelihood: -8462.981430
EM: Round [788] log likelihood: -8462.980660
EM: Round [789] log likelihood: -8462.979892
EM: Round [790] log likelihood: -8462.979124
EM: Round [791] log likelihood: -8462.978357
EM: Round [792] log likelihood: -8462.977591
EM: Round [793] log likelihood: -8462.976826
EM: Round [794] log likelihood: -8462.976062
EM: Round [795] log likelihood: -8462.975299
EM: Round [796] log likelihood: -8462.974536
EM: Round [797] log likelihood: -8462.973775
EM: Round [798] log likelihood: -8462.973015
EM: Round [799] log likelihood: -8462.972255
EM: Round [800] log likelihood: -8462.971496
EM: Round [801] log likelihood: -8462.970739
EM: Round [802] log likelihood: -8462.969982
EM: Round [803] log likelihood: -8462.969226
EM: Round [804] log likelihood: -8462.968471
EM: Round [805] log likelihood: -8462.967717
EM: Round [806] log likelihood: -8462.966964
EM: Round [807] log likelihood: -8462.966212
EM: Round [808] log likelihood: -8462.965460
EM: Round [809] log likelihood: -8462.964710
EM: Round [810] log likelihood: -8462.963960
EM: Round [811] log likelihood: -8462.963212
EM: Round [812] log likelihood: -8462.962464
EM: Round [813] log likelihood: -8462.961717
EM: Round [814] log likelihood: -8462.960971
EM: Round [815] log likelihood: -8462.960226
EM: Round [816] log likelihood: -8462.959482
EM: Round [817] log likelihood: -8462.958738
EM: Round [818] log likelihood: -8462.957996
EM: Round [819] log likelihood: -8462.957254
EM: Round [820] log likelihood: -8462.956514
EM: Round [821] log likelihood: -8462.955774
EM: Round [822] log likelihood: -8462.955035
EM: Round [823] log likelihood: -8462.954297
EM: Round [824] log likelihood: -8462.953560
EM: Round [825] log likelihood: -8462.952823
EM: Round [826] log likelihood: -8462.952088
EM: Round [827] log likelihood: -8462.951353
EM: Round [828] log likelihood: -8462.950619
EM: Round [829] log likelihood: -8462.949887
EM: Round [830] log likelihood: -8462.949155
EM: Round [831] log likelihood: -8462.948423
EM: Round [832] log likelihood: -8462.947693
EM: Round [833] log likelihood: -8462.946964
EM: Round [834] log likelihood: -8462.946235
EM: Round [835] log likelihood: -8462.945507
EM: Round [836] log likelihood: -8462.944781
EM: Round [837] log likelihood: -8462.944055
EM: Round [838] log likelihood: -8462.943329
EM: Round [839] log likelihood: -8462.942605
EM: Round [840] log likelihood: -8462.941882
EM: Round [841] log likelihood: -8462.941159
EM: Round [842] log likelihood: -8462.940437
EM: Round [843] log likelihood: -8462.939716
EM: Round [844] log likelihood: -8462.938996
EM: Round [845] log likelihood: -8462.938277
EM: Round [846] log likelihood: -8462.937559
EM: Round [847] log likelihood: -8462.936841
EM: Round [848] log likelihood: -8462.936124
EM: Round [849] log likelihood: -8462.935408
EM: Round [850] log likelihood: -8462.934693
EM: Round [851] log likelihood: -8462.933979
EM: Round [852] log likelihood: -8462.933265
EM: Round [853] log likelihood: -8462.932553
EM: Round [854] log likelihood: -8462.931841
EM: Round [855] log likelihood: -8462.931130
EM: Round [856] log likelihood: -8462.930420
EM: Round [857] log likelihood: -8462.929711
EM: Round [858] log likelihood: -8462.929002
EM: Round [859] log likelihood: -8462.928294
EM: Round [860] log likelihood: -8462.927587
EM: Round [861] log likelihood: -8462.926881
EM: Round [862] log likelihood: -8462.926176
EM: Round [863] log likelihood: -8462.925472
EM: Round [864] log likelihood: -8462.924768
EM: Round [865] log likelihood: -8462.924065
EM: Round [866] log likelihood: -8462.923363
EM: Round [867] log likelihood: -8462.922662
EM: Round [868] log likelihood: -8462.921962
EM: Round [869] log likelihood: -8462.921262
EM: Round [870] log likelihood: -8462.920563
EM: Round [871] log likelihood: -8462.919865
EM: Round [872] log likelihood: -8462.919168
EM: Round [873] log likelihood: -8462.918471
EM: Round [874] log likelihood: -8462.917776
EM: Round [875] log likelihood: -8462.917081
EM: Round [876] log likelihood: -8462.916387
EM: Round [877] log likelihood: -8462.915694
EM: Round [878] log likelihood: -8462.915001
EM: Round [879] log likelihood: -8462.914310
EM: Round [880] log likelihood: -8462.913619
EM: Round [881] log likelihood: -8462.912928
EM: Round [882] log likelihood: -8462.912239
EM: Round [883] log likelihood: -8462.911551
EM: Round [884] log likelihood: -8462.910863
EM: Round [885] log likelihood: -8462.910176
EM: Round [886] log likelihood: -8462.909490
EM: Round [887] log likelihood: -8462.908804
EM: Round [888] log likelihood: -8462.908120
EM: Round [889] log likelihood: -8462.907436
EM: Round [890] log likelihood: -8462.906752
EM: Round [891] log likelihood: -8462.906070
EM: Round [892] log likelihood: -8462.905389
EM: Round [893] log likelihood: -8462.904708
EM: Round [894] log likelihood: -8462.904028
EM: Round [895] log likelihood: -8462.903348
EM: Round [896] log likelihood: -8462.902670
EM: Round [897] log likelihood: -8462.901992
EM: Round [898] log likelihood: -8462.901315
EM: Round [899] log likelihood: -8462.900639
EM: Round [900] log likelihood: -8462.899963
EM: Round [901] log likelihood: -8462.899289
EM: Round [902] log likelihood: -8462.898615
EM: Round [903] log likelihood: -8462.897941
EM: Round [904] log likelihood: -8462.897269
EM: Round [905] log likelihood: -8462.896597
EM: Round [906] log likelihood: -8462.895926
EM: Round [907] log likelihood: -8462.895256
EM: Round [908] log likelihood: -8462.894586
EM: Round [909] log likelihood: -8462.893918
EM: Round [910] log likelihood: -8462.893250
EM: Round [911] log likelihood: -8462.892582
EM: Round [912] log likelihood: -8462.891916
EM: Round [913] log likelihood: -8462.891250
EM: Round [914] log likelihood: -8462.890585
EM: Round [915] log likelihood: -8462.889921
EM: Round [916] log likelihood: -8462.889257
EM: Round [917] log likelihood: -8462.888595
EM: Round [918] log likelihood: -8462.887932
EM: Round [919] log likelihood: -8462.887271
EM: Round [920] log likelihood: -8462.886610
EM: Round [921] log likelihood: -8462.885951
EM: Round [922] log likelihood: -8462.885291
EM: Round [923] log likelihood: -8462.884633
EM: Round [924] log likelihood: -8462.883975
EM: Round [925] log likelihood: -8462.883318
EM: Round [926] log likelihood: -8462.882662
EM: Round [927] log likelihood: -8462.882006
EM: Round [928] log likelihood: -8462.881352
EM: Round [929] log likelihood: -8462.880697
EM: Round [930] log likelihood: -8462.880044
EM: Round [931] log likelihood: -8462.879391
EM: Round [932] log likelihood: -8462.878739
EM: Round [933] log likelihood: -8462.878088
EM: Round [934] log likelihood: -8462.877438
EM: Round [935] log likelihood: -8462.876788
EM: Round [936] log likelihood: -8462.876139
EM: Round [937] log likelihood: -8462.875490
EM: Round [938] log likelihood: -8462.874843
EM: Round [939] log likelihood: -8462.874196
EM: Round [940] log likelihood: -8462.873549
EM: Round [941] log likelihood: -8462.872904
EM: Round [942] log likelihood: -8462.872259
EM: Round [943] log likelihood: -8462.871615
EM: Round [944] log likelihood: -8462.870971
EM: Round [945] log likelihood: -8462.870329
EM: Round [946] log likelihood: -8462.869686
EM: Round [947] log likelihood: -8462.869045
EM: Round [948] log likelihood: -8462.868404
EM: Round [949] log likelihood: -8462.867764
EM: Round [950] log likelihood: -8462.867125
EM: Round [951] log likelihood: -8462.866487
EM: Round [952] log likelihood: -8462.865849
EM: Round [953] log likelihood: -8462.865211
EM: Round [954] log likelihood: -8462.864575
EM: Round [955] log likelihood: -8462.863939
EM: Round [956] log likelihood: -8462.863304
EM: Round [957] log likelihood: -8462.862669
EM: Round [958] log likelihood: -8462.862036
EM: Round [959] log likelihood: -8462.861403
EM: Round [960] log likelihood: -8462.860770
EM: Round [961] log likelihood: -8462.860138
EM: Round [962] log likelihood: -8462.859507
EM: Round [963] log likelihood: -8462.858877
EM: Round [964] log likelihood: -8462.858247
EM: Round [965] log likelihood: -8462.857618
EM: Round [966] log likelihood: -8462.856990
EM: Round [967] log likelihood: -8462.856362
EM: Round [968] log likelihood: -8462.855735
EM: Round [969] log likelihood: -8462.855109
EM: Round [970] log likelihood: -8462.854483
EM: Round [971] log likelihood: -8462.853858
EM: Round [972] log likelihood: -8462.853234
EM: Round [973] log likelihood: -8462.852610
EM: Round [974] log likelihood: -8462.851987
EM: Round [975] log likelihood: -8462.851365
EM: Round [976] log likelihood: -8462.850743
EM: Round [977] log likelihood: -8462.850122
EM: Round [978] log likelihood: -8462.849502
EM: Round [979] log likelihood: -8462.848882
EM: Round [980] log likelihood: -8462.848263
EM: Round [981] log likelihood: -8462.847645
EM: Round [982] log likelihood: -8462.847027
EM: Round [983] log likelihood: -8462.846410
EM: Round [984] log likelihood: -8462.845794
EM: Round [985] log likelihood: -8462.845178
EM: Round [986] log likelihood: -8462.844563
EM: Round [987] log likelihood: -8462.843948
EM: Round [988] log likelihood: -8462.843334
EM: Round [989] log likelihood: -8462.842721
EM: Round [990] log likelihood: -8462.842109
EM: Round [991] log likelihood: -8462.841497
EM: Round [992] log likelihood: -8462.840886
EM: Round [993] log likelihood: -8462.840275
EM: Round [994] log likelihood: -8462.839665
EM: Round [995] log likelihood: -8462.839056
EM: Round [996] log likelihood: -8462.838447
EM: Round [997] log likelihood: -8462.837839
EM: Round [998] log likelihood: -8462.837232
EM: Round [999] log likelihood: -8462.836625
EM: Round [1000] log likelihood: -8462.836019
EM: Round [1001] log likelihood: -8462.835414
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/init_EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/filter_by_frag_threshs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/prep_igv_extract_junc_reads.ok
Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam"
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
Execution Time = 0.01 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam"
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/prep_igv_junc_reads_bam.ok
Running: samtools index /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/samtools_idx_junc_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bed
Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bed
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bed > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bed > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.junction_reads.bam.tabix.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/span_reads_acc.ok
Running: samtools view -H /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/init_spanning_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam || :
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam || :
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/prep_spanning_reads.ok
Running: samtools index /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/samtools_index_span_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bed
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bed > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bed > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.spanning_reads.bam.tabix.ok
Running: cp /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/cp_consol_bam.ok
Running: samtools index /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam
Execution Time = 0.03 minutes. CMD: samtools index /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/index_consol_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam --max_insert_size 10000000
-extracting read coordinates from /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam into /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam.read_coords
CMD: touch /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam.read_coords > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam.frag_coords > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam.frag_coords.coord_sorted
Execution Time = 0.65 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam --max_insert_size 10000000
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/prep_igv_sam_frag_coordss.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam.frag_coords > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.FusionJuncSpan
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.consolidated.bam.frag_coords > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.FusionJuncSpan
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/prep_igv_juncspan_fmt.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.Pfam.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.Pfam.gff3
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/prep_igv_pfam_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.Pfam.gff3 > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.Pfam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.Pfam.gff3 > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.Pfam.bed
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/prep_igv_pfam_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.seqsimilar.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.seqsimilar.gff3
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/prep_igv_seqsim_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.seqsimilar.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.igv.seqsimilar.bed
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/prep_igv_seqsim_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa > /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/add_splice_info.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.cfy5G5uomt/fi_workdir/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/blast_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir
-done, see /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/annot_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
EM: Starting log likelihood: -8004.660077
EM: Round [1] log likelihood: -8004.184587
EM: Round [2] log likelihood: -8004.181395
EM: Round [3] log likelihood: -8004.178321
EM: Round [4] log likelihood: -8004.175258
EM: Round [5] log likelihood: -8004.172206
EM: Round [6] log likelihood: -8004.169165
EM: Round [7] log likelihood: -8004.166134
EM: Round [8] log likelihood: -8004.163114
EM: Round [9] log likelihood: -8004.160104
EM: Round [10] log likelihood: -8004.157104
EM: Round [11] log likelihood: -8004.154115
EM: Round [12] log likelihood: -8004.151136
EM: Round [13] log likelihood: -8004.148167
EM: Round [14] log likelihood: -8004.145208
EM: Round [15] log likelihood: -8004.142259
EM: Round [16] log likelihood: -8004.139321
EM: Round [17] log likelihood: -8004.136392
EM: Round [18] log likelihood: -8004.133473
EM: Round [19] log likelihood: -8004.130564
EM: Round [20] log likelihood: -8004.127664
EM: Round [21] log likelihood: -8004.124774
EM: Round [22] log likelihood: -8004.121894
EM: Round [23] log likelihood: -8004.119024
EM: Round [24] log likelihood: -8004.116162
EM: Round [25] log likelihood: -8004.113311
EM: Round [26] log likelihood: -8004.110468
EM: Round [27] log likelihood: -8004.107635
EM: Round [28] log likelihood: -8004.104811
EM: Round [29] log likelihood: -8004.101997
EM: Round [30] log likelihood: -8004.099191
EM: Round [31] log likelihood: -8004.096395
EM: Round [32] log likelihood: -8004.093608
EM: Round [33] log likelihood: -8004.090829
EM: Round [34] log likelihood: -8004.088060
EM: Round [35] log likelihood: -8004.085299
EM: Round [36] log likelihood: -8004.082548
EM: Round [37] log likelihood: -8004.079805
EM: Round [38] log likelihood: -8004.077071
EM: Round [39] log likelihood: -8004.074345
EM: Round [40] log likelihood: -8004.071628
EM: Round [41] log likelihood: -8004.068920
EM: Round [42] log likelihood: -8004.066220
EM: Round [43] log likelihood: -8004.063528
EM: Round [44] log likelihood: -8004.060845
EM: Round [45] log likelihood: -8004.058171
EM: Round [46] log likelihood: -8004.055504
EM: Round [47] log likelihood: -8004.052846
EM: Round [48] log likelihood: -8004.050197
EM: Round [49] log likelihood: -8004.047555
EM: Round [50] log likelihood: -8004.044921
EM: Round [51] log likelihood: -8004.042296
EM: Round [52] log likelihood: -8004.039679
EM: Round [53] log likelihood: -8004.037069
EM: Round [54] log likelihood: -8004.034468
EM: Round [55] log likelihood: -8004.031874
EM: Round [56] log likelihood: -8004.029289
EM: Round [57] log likelihood: -8004.026711
EM: Round [58] log likelihood: -8004.024141
EM: Round [59] log likelihood: -8004.021578
EM: Round [60] log likelihood: -8004.019024
EM: Round [61] log likelihood: -8004.016476
EM: Round [62] log likelihood: -8004.013937
EM: Round [63] log likelihood: -8004.011405
EM: Round [64] log likelihood: -8004.008881
EM: Round [65] log likelihood: -8004.006364
EM: Round [66] log likelihood: -8004.003854
EM: Round [67] log likelihood: -8004.001352
EM: Round [68] log likelihood: -8003.998858
EM: Round [69] log likelihood: -8003.996370
EM: Round [70] log likelihood: -8003.993890
EM: Round [71] log likelihood: -8003.991417
EM: Round [72] log likelihood: -8003.988951
EM: Round [73] log likelihood: -8003.986493
EM: Round [74] log likelihood: -8003.984041
EM: Round [75] log likelihood: -8003.981597
EM: Round [76] log likelihood: -8003.979160
EM: Round [77] log likelihood: -8003.976729
EM: Round [78] log likelihood: -8003.974306
EM: Round [79] log likelihood: -8003.971890
EM: Round [80] log likelihood: -8003.969480
EM: Round [81] log likelihood: -8003.967077
EM: Round [82] log likelihood: -8003.964682
EM: Round [83] log likelihood: -8003.962293
EM: Round [84] log likelihood: -8003.959910
EM: Round [85] log likelihood: -8003.957535
EM: Round [86] log likelihood: -8003.955166
EM: Round [87] log likelihood: -8003.952804
EM: Round [88] log likelihood: -8003.950448
EM: Round [89] log likelihood: -8003.948099
EM: Round [90] log likelihood: -8003.945756
EM: Round [91] log likelihood: -8003.943420
EM: Round [92] log likelihood: -8003.941091
EM: Round [93] log likelihood: -8003.938768
EM: Round [94] log likelihood: -8003.936451
EM: Round [95] log likelihood: -8003.934141
EM: Round [96] log likelihood: -8003.931837
EM: Round [97] log likelihood: -8003.929539
EM: Round [98] log likelihood: -8003.927248
EM: Round [99] log likelihood: -8003.924963
EM: Round [100] log likelihood: -8003.922684
EM: Round [101] log likelihood: -8003.920411
EM: Round [102] log likelihood: -8003.918145
EM: Round [103] log likelihood: -8003.915884
EM: Round [104] log likelihood: -8003.913630
EM: Round [105] log likelihood: -8003.911382
EM: Round [106] log likelihood: -8003.909140
EM: Round [107] log likelihood: -8003.906904
EM: Round [108] log likelihood: -8003.904673
EM: Round [109] log likelihood: -8003.902449
EM: Round [110] log likelihood: -8003.900231
EM: Round [111] log likelihood: -8003.898018
EM: Round [112] log likelihood: -8003.895812
EM: Round [113] log likelihood: -8003.893611
EM: Round [114] log likelihood: -8003.891416
EM: Round [115] log likelihood: -8003.889227
EM: Round [116] log likelihood: -8003.887044
EM: Round [117] log likelihood: -8003.884866
EM: Round [118] log likelihood: -8003.882694
EM: Round [119] log likelihood: -8003.880528
EM: Round [120] log likelihood: -8003.878367
EM: Round [121] log likelihood: -8003.876212
EM: Round [122] log likelihood: -8003.874063
EM: Round [123] log likelihood: -8003.871919
EM: Round [124] log likelihood: -8003.869781
EM: Round [125] log likelihood: -8003.867648
EM: Round [126] log likelihood: -8003.865520
EM: Round [127] log likelihood: -8003.863398
EM: Round [128] log likelihood: -8003.861282
EM: Round [129] log likelihood: -8003.859171
EM: Round [130] log likelihood: -8003.857065
EM: Round [131] log likelihood: -8003.854965
EM: Round [132] log likelihood: -8003.852870
EM: Round [133] log likelihood: -8003.850780
EM: Round [134] log likelihood: -8003.848696
EM: Round [135] log likelihood: -8003.846617
EM: Round [136] log likelihood: -8003.844543
EM: Round [137] log likelihood: -8003.842474
EM: Round [138] log likelihood: -8003.840411
EM: Round [139] log likelihood: -8003.838352
EM: Round [140] log likelihood: -8003.836299
EM: Round [141] log likelihood: -8003.834251
EM: Round [142] log likelihood: -8003.832208
EM: Round [143] log likelihood: -8003.830170
EM: Round [144] log likelihood: -8003.828137
EM: Round [145] log likelihood: -8003.826110
EM: Round [146] log likelihood: -8003.824087
EM: Round [147] log likelihood: -8003.822069
EM: Round [148] log likelihood: -8003.820056
EM: Round [149] log likelihood: -8003.818048
EM: Round [150] log likelihood: -8003.816045
EM: Round [151] log likelihood: -8003.814047
EM: Round [152] log likelihood: -8003.812054
EM: Round [153] log likelihood: -8003.810065
EM: Round [154] log likelihood: -8003.808081
EM: Round [155] log likelihood: -8003.806103
EM: Round [156] log likelihood: -8003.804129
EM: Round [157] log likelihood: -8003.802159
EM: Round [158] log likelihood: -8003.800195
EM: Round [159] log likelihood: -8003.798235
EM: Round [160] log likelihood: -8003.796280
EM: Round [161] log likelihood: -8003.794330
EM: Round [162] log likelihood: -8003.792384
EM: Round [163] log likelihood: -8003.790443
EM: Round [164] log likelihood: -8003.788506
EM: Round [165] log likelihood: -8003.786574
EM: Round [166] log likelihood: -8003.784647
EM: Round [167] log likelihood: -8003.782724
EM: Round [168] log likelihood: -8003.780806
EM: Round [169] log likelihood: -8003.778892
EM: Round [170] log likelihood: -8003.776983
EM: Round [171] log likelihood: -8003.775079
EM: Round [172] log likelihood: -8003.773178
EM: Round [173] log likelihood: -8003.771283
EM: Round [174] log likelihood: -8003.769391
EM: Round [175] log likelihood: -8003.767504
EM: Round [176] log likelihood: -8003.765622
EM: Round [177] log likelihood: -8003.763744
EM: Round [178] log likelihood: -8003.761870
EM: Round [179] log likelihood: -8003.760000
EM: Round [180] log likelihood: -8003.758135
EM: Round [181] log likelihood: -8003.756274
EM: Round [182] log likelihood: -8003.754418
EM: Round [183] log likelihood: -8003.752565
EM: Round [184] log likelihood: -8003.750717
EM: Round [185] log likelihood: -8003.748873
EM: Round [186] log likelihood: -8003.747034
EM: Round [187] log likelihood: -8003.745198
EM: Round [188] log likelihood: -8003.743367
EM: Round [189] log likelihood: -8003.741540
EM: Round [190] log likelihood: -8003.739717
EM: Round [191] log likelihood: -8003.737898
EM: Round [192] log likelihood: -8003.736083
EM: Round [193] log likelihood: -8003.734273
EM: Round [194] log likelihood: -8003.732466
EM: Round [195] log likelihood: -8003.730664
EM: Round [196] log likelihood: -8003.728865
EM: Round [197] log likelihood: -8003.727071
EM: Round [198] log likelihood: -8003.725280
EM: Round [199] log likelihood: -8003.723494
EM: Round [200] log likelihood: -8003.721711
EM: Round [201] log likelihood: -8003.719933
EM: Round [202] log likelihood: -8003.718158
EM: Round [203] log likelihood: -8003.716388
EM: Round [204] log likelihood: -8003.714621
EM: Round [205] log likelihood: -8003.712858
EM: Round [206] log likelihood: -8003.711099
EM: Round [207] log likelihood: -8003.709344
EM: Round [208] log likelihood: -8003.707593
EM: Round [209] log likelihood: -8003.705845
EM: Round [210] log likelihood: -8003.704102
EM: Round [211] log likelihood: -8003.702362
EM: Round [212] log likelihood: -8003.700626
EM: Round [213] log likelihood: -8003.698894
EM: Round [214] log likelihood: -8003.697166
EM: Round [215] log likelihood: -8003.695441
EM: Round [216] log likelihood: -8003.693720
EM: Round [217] log likelihood: -8003.692003
EM: Round [218] log likelihood: -8003.690289
EM: Round [219] log likelihood: -8003.688579
EM: Round [220] log likelihood: -8003.686873
EM: Round [221] log likelihood: -8003.685171
EM: Round [222] log likelihood: -8003.683472
EM: Round [223] log likelihood: -8003.681777
EM: Round [224] log likelihood: -8003.680085
EM: Round [225] log likelihood: -8003.678397
EM: Round [226] log likelihood: -8003.676713
EM: Round [227] log likelihood: -8003.675032
EM: Round [228] log likelihood: -8003.673355
EM: Round [229] log likelihood: -8003.671681
EM: Round [230] log likelihood: -8003.670011
EM: Round [231] log likelihood: -8003.668344
EM: Round [232] log likelihood: -8003.666681
EM: Round [233] log likelihood: -8003.665022
EM: Round [234] log likelihood: -8003.663366
EM: Round [235] log likelihood: -8003.661713
EM: Round [236] log likelihood: -8003.660064
EM: Round [237] log likelihood: -8003.658418
EM: Round [238] log likelihood: -8003.656776
EM: Round [239] log likelihood: -8003.655137
EM: Round [240] log likelihood: -8003.653501
EM: Round [241] log likelihood: -8003.651869
EM: Round [242] log likelihood: -8003.650241
EM: Round [243] log likelihood: -8003.648615
EM: Round [244] log likelihood: -8003.646993
EM: Round [245] log likelihood: -8003.645375
EM: Round [246] log likelihood: -8003.643759
EM: Round [247] log likelihood: -8003.642148
EM: Round [248] log likelihood: -8003.640539
EM: Round [249] log likelihood: -8003.638933
EM: Round [250] log likelihood: -8003.637331
EM: Round [251] log likelihood: -8003.635733
EM: Round [252] log likelihood: -8003.634137
EM: Round [253] log likelihood: -8003.632545
EM: Round [254] log likelihood: -8003.630956
EM: Round [255] log likelihood: -8003.629370
EM: Round [256] log likelihood: -8003.627787
EM: Round [257] log likelihood: -8003.626208
EM: Round [258] log likelihood: -8003.624632
EM: Round [259] log likelihood: -8003.623059
EM: Round [260] log likelihood: -8003.621489
EM: Round [261] log likelihood: -8003.619922
EM: Round [262] log likelihood: -8003.618358
EM: Round [263] log likelihood: -8003.616798
EM: Round [264] log likelihood: -8003.615241
EM: Round [265] log likelihood: -8003.613686
EM: Round [266] log likelihood: -8003.612135
EM: Round [267] log likelihood: -8003.610587
EM: Round [268] log likelihood: -8003.609042
EM: Round [269] log likelihood: -8003.607501
EM: Round [270] log likelihood: -8003.605962
EM: Round [271] log likelihood: -8003.604426
EM: Round [272] log likelihood: -8003.602893
EM: Round [273] log likelihood: -8003.601364
EM: Round [274] log likelihood: -8003.599837
EM: Round [275] log likelihood: -8003.598313
EM: Round [276] log likelihood: -8003.596792
EM: Round [277] log likelihood: -8003.595275
EM: Round [278] log likelihood: -8003.593760
EM: Round [279] log likelihood: -8003.592248
EM: Round [280] log likelihood: -8003.590739
EM: Round [281] log likelihood: -8003.589234
EM: Round [282] log likelihood: -8003.587731
EM: Round [283] log likelihood: -8003.586231
EM: Round [284] log likelihood: -8003.584733
EM: Round [285] log likelihood: -8003.583239
EM: Round [286] log likelihood: -8003.581748
EM: Round [287] log likelihood: -8003.580260
EM: Round [288] log likelihood: -8003.578774
EM: Round [289] log likelihood: -8003.577291
EM: Round [290] log likelihood: -8003.575811
EM: Round [291] log likelihood: -8003.574334
EM: Round [292] log likelihood: -8003.572860
EM: Round [293] log likelihood: -8003.571389
EM: Round [294] log likelihood: -8003.569920
EM: Round [295] log likelihood: -8003.568455
EM: Round [296] log likelihood: -8003.566992
EM: Round [297] log likelihood: -8003.565532
EM: Round [298] log likelihood: -8003.564074
EM: Round [299] log likelihood: -8003.562620
EM: Round [300] log likelihood: -8003.561168
EM: Round [301] log likelihood: -8003.559719
EM: Round [302] log likelihood: -8003.558272
EM: Round [303] log likelihood: -8003.556829
EM: Round [304] log likelihood: -8003.555388
EM: Round [305] log likelihood: -8003.553950
EM: Round [306] log likelihood: -8003.552514
EM: Round [307] log likelihood: -8003.551081
EM: Round [308] log likelihood: -8003.549651
EM: Round [309] log likelihood: -8003.548224
EM: Round [310] log likelihood: -8003.546799
EM: Round [311] log likelihood: -8003.545377
EM: Round [312] log likelihood: -8003.543957
EM: Round [313] log likelihood: -8003.542541
EM: Round [314] log likelihood: -8003.541126
EM: Round [315] log likelihood: -8003.539715
EM: Round [316] log likelihood: -8003.538306
EM: Round [317] log likelihood: -8003.536900
EM: Round [318] log likelihood: -8003.535496
EM: Round [319] log likelihood: -8003.534095
EM: Round [320] log likelihood: -8003.532696
EM: Round [321] log likelihood: -8003.531300
EM: Round [322] log likelihood: -8003.529907
EM: Round [323] log likelihood: -8003.528516
EM: Round [324] log likelihood: -8003.527128
EM: Round [325] log likelihood: -8003.525742
EM: Round [326] log likelihood: -8003.524359
EM: Round [327] log likelihood: -8003.522978
EM: Round [328] log likelihood: -8003.521600
EM: Round [329] log likelihood: -8003.520224
EM: Round [330] log likelihood: -8003.518851
EM: Round [331] log likelihood: -8003.517480
EM: Round [332] log likelihood: -8003.516112
EM: Round [333] log likelihood: -8003.514746
EM: Round [334] log likelihood: -8003.513383
EM: Round [335] log likelihood: -8003.512022
EM: Round [336] log likelihood: -8003.510664
EM: Round [337] log likelihood: -8003.509308
EM: Round [338] log likelihood: -8003.507954
EM: Round [339] log likelihood: -8003.506603
EM: Round [340] log likelihood: -8003.505254
EM: Round [341] log likelihood: -8003.503908
EM: Round [342] log likelihood: -8003.502564
EM: Round [343] log likelihood: -8003.501223
EM: Round [344] log likelihood: -8003.499884
EM: Round [345] log likelihood: -8003.498547
EM: Round [346] log likelihood: -8003.497213
EM: Round [347] log likelihood: -8003.495881
EM: Round [348] log likelihood: -8003.494552
EM: Round [349] log likelihood: -8003.493225
EM: Round [350] log likelihood: -8003.491900
EM: Round [351] log likelihood: -8003.490577
EM: Round [352] log likelihood: -8003.489257
EM: Round [353] log likelihood: -8003.487939
EM: Round [354] log likelihood: -8003.486624
EM: Round [355] log likelihood: -8003.485311
EM: Round [356] log likelihood: -8003.484000
EM: Round [357] log likelihood: -8003.482691
EM: Round [358] log likelihood: -8003.481385
EM: Round [359] log likelihood: -8003.480081
EM: Round [360] log likelihood: -8003.478779
EM: Round [361] log likelihood: -8003.477480
EM: Round [362] log likelihood: -8003.476182
EM: Round [363] log likelihood: -8003.474887
EM: Round [364] log likelihood: -8003.473595
EM: Round [365] log likelihood: -8003.472304
EM: Round [366] log likelihood: -8003.471016
EM: Round [367] log likelihood: -8003.469730
EM: Round [368] log likelihood: -8003.468446
EM: Round [369] log likelihood: -8003.467165
EM: Round [370] log likelihood: -8003.465885
EM: Round [371] log likelihood: -8003.464608
EM: Round [372] log likelihood: -8003.463333
EM: Round [373] log likelihood: -8003.462061
EM: Round [374] log likelihood: -8003.460790
EM: Round [375] log likelihood: -8003.459522
EM: Round [376] log likelihood: -8003.458255
EM: Round [377] log likelihood: -8003.456991
EM: Round [378] log likelihood: -8003.455729
EM: Round [379] log likelihood: -8003.454470
EM: Round [380] log likelihood: -8003.453212
EM: Round [381] log likelihood: -8003.451957
EM: Round [382] log likelihood: -8003.450703
EM: Round [383] log likelihood: -8003.449452
EM: Round [384] log likelihood: -8003.448203
EM: Round [385] log likelihood: -8003.446956
EM: Round [386] log likelihood: -8003.445711
EM: Round [387] log likelihood: -8003.444468
EM: Round [388] log likelihood: -8003.443228
EM: Round [389] log likelihood: -8003.441989
EM: Round [390] log likelihood: -8003.440752
EM: Round [391] log likelihood: -8003.439518
EM: Round [392] log likelihood: -8003.438286
EM: Round [393] log likelihood: -8003.437055
EM: Round [394] log likelihood: -8003.435827
EM: Round [395] log likelihood: -8003.434601
EM: Round [396] log likelihood: -8003.433377
EM: Round [397] log likelihood: -8003.432155
EM: Round [398] log likelihood: -8003.430934
EM: Round [399] log likelihood: -8003.429716
EM: Round [400] log likelihood: -8003.428500
EM: Round [401] log likelihood: -8003.427286
EM: Round [402] log likelihood: -8003.426074
EM: Round [403] log likelihood: -8003.424864
EM: Round [404] log likelihood: -8003.423656
EM: Round [405] log likelihood: -8003.422450
EM: Round [406] log likelihood: -8003.421246
EM: Round [407] log likelihood: -8003.420044
EM: Round [408] log likelihood: -8003.418844
EM: Round [409] log likelihood: -8003.417646
EM: Round [410] log likelihood: -8003.416450
EM: Round [411] log likelihood: -8003.415256
EM: Round [412] log likelihood: -8003.414064
EM: Round [413] log likelihood: -8003.412873
EM: Round [414] log likelihood: -8003.411685
EM: Round [415] log likelihood: -8003.410499
EM: Round [416] log likelihood: -8003.409314
EM: Round [417] log likelihood: -8003.408132
EM: Round [418] log likelihood: -8003.406951
EM: Round [419] log likelihood: -8003.405772
EM: Round [420] log likelihood: -8003.404596
EM: Round [421] log likelihood: -8003.403421
EM: Round [422] log likelihood: -8003.402248
EM: Round [423] log likelihood: -8003.401077
EM: Round [424] log likelihood: -8003.399907
EM: Round [425] log likelihood: -8003.398740
EM: Round [426] log likelihood: -8003.397575
EM: Round [427] log likelihood: -8003.396411
EM: Round [428] log likelihood: -8003.395249
EM: Round [429] log likelihood: -8003.394090
EM: Round [430] log likelihood: -8003.392932
EM: Round [431] log likelihood: -8003.391776
EM: Round [432] log likelihood: -8003.390621
EM: Round [433] log likelihood: -8003.389469
EM: Round [434] log likelihood: -8003.388318
EM: Round [435] log likelihood: -8003.387170
EM: Round [436] log likelihood: -8003.386023
EM: Round [437] log likelihood: -8003.384878
EM: Round [438] log likelihood: -8003.383734
EM: Round [439] log likelihood: -8003.382593
EM: Round [440] log likelihood: -8003.381453
EM: Round [441] log likelihood: -8003.380315
EM: Round [442] log likelihood: -8003.379179
EM: Round [443] log likelihood: -8003.378045
EM: Round [444] log likelihood: -8003.376913
EM: Round [445] log likelihood: -8003.375782
EM: Round [446] log likelihood: -8003.374653
EM: Round [447] log likelihood: -8003.373526
EM: Round [448] log likelihood: -8003.372400
EM: Round [449] log likelihood: -8003.371277
EM: Round [450] log likelihood: -8003.370155
EM: Round [451] log likelihood: -8003.369035
EM: Round [452] log likelihood: -8003.367917
EM: Round [453] log likelihood: -8003.366800
EM: Round [454] log likelihood: -8003.365685
EM: Round [455] log likelihood: -8003.364572
EM: Round [456] log likelihood: -8003.363461
EM: Round [457] log likelihood: -8003.362351
EM: Round [458] log likelihood: -8003.361243
EM: Round [459] log likelihood: -8003.360137
EM: Round [460] log likelihood: -8003.359032
EM: Round [461] log likelihood: -8003.357929
EM: Round [462] log likelihood: -8003.356828
EM: Round [463] log likelihood: -8003.355729
EM: Round [464] log likelihood: -8003.354631
EM: Round [465] log likelihood: -8003.353535
EM: Round [466] log likelihood: -8003.352441
EM: Round [467] log likelihood: -8003.351348
EM: Round [468] log likelihood: -8003.350257
EM: Round [469] log likelihood: -8003.349168
EM: Round [470] log likelihood: -8003.348080
EM: Round [471] log likelihood: -8003.346994
EM: Round [472] log likelihood: -8003.345910
EM: Round [473] log likelihood: -8003.344828
EM: Round [474] log likelihood: -8003.343747
EM: Round [475] log likelihood: -8003.342667
EM: Round [476] log likelihood: -8003.341590
EM: Round [477] log likelihood: -8003.340513
EM: Round [478] log likelihood: -8003.339439
EM: Round [479] log likelihood: -8003.338366
EM: Round [480] log likelihood: -8003.337295
EM: Round [481] log likelihood: -8003.336225
EM: Round [482] log likelihood: -8003.335158
EM: Round [483] log likelihood: -8003.334091
EM: Round [484] log likelihood: -8003.333027
EM: Round [485] log likelihood: -8003.331963
EM: Round [486] log likelihood: -8003.330902
EM: Round [487] log likelihood: -8003.329842
EM: Round [488] log likelihood: -8003.328784
EM: Round [489] log likelihood: -8003.327727
EM: Round [490] log likelihood: -8003.326672
EM: Round [491] log likelihood: -8003.325618
EM: Round [492] log likelihood: -8003.324566
EM: Round [493] log likelihood: -8003.323516
EM: Round [494] log likelihood: -8003.322467
EM: Round [495] log likelihood: -8003.321420
EM: Round [496] log likelihood: -8003.320374
EM: Round [497] log likelihood: -8003.319330
EM: Round [498] log likelihood: -8003.318287
EM: Round [499] log likelihood: -8003.317246
EM: Round [500] log likelihood: -8003.316207
EM: Round [501] log likelihood: -8003.315169
EM: Round [502] log likelihood: -8003.314132
EM: Round [503] log likelihood: -8003.313097
EM: Round [504] log likelihood: -8003.312064
EM: Round [505] log likelihood: -8003.311032
EM: Round [506] log likelihood: -8003.310002
EM: Round [507] log likelihood: -8003.308973
EM: Round [508] log likelihood: -8003.307946
EM: Round [509] log likelihood: -8003.306920
EM: Round [510] log likelihood: -8003.305896
EM: Round [511] log likelihood: -8003.304873
EM: Round [512] log likelihood: -8003.303851
EM: Round [513] log likelihood: -8003.302832
EM: Round [514] log likelihood: -8003.301813
EM: Round [515] log likelihood: -8003.300797
EM: Round [516] log likelihood: -8003.299781
EM: Round [517] log likelihood: -8003.298767
EM: Round [518] log likelihood: -8003.297755
EM: Round [519] log likelihood: -8003.296744
EM: Round [520] log likelihood: -8003.295735
EM: Round [521] log likelihood: -8003.294727
EM: Round [522] log likelihood: -8003.293720
EM: Round [523] log likelihood: -8003.292715
EM: Round [524] log likelihood: -8003.291712
EM: Round [525] log likelihood: -8003.290710
EM: Round [526] log likelihood: -8003.289709
EM: Round [527] log likelihood: -8003.288710
EM: Round [528] log likelihood: -8003.287712
EM: Round [529] log likelihood: -8003.286715
EM: Round [530] log likelihood: -8003.285721
EM: Round [531] log likelihood: -8003.284727
EM: Round [532] log likelihood: -8003.283735
EM: Round [533] log likelihood: -8003.282744
EM: Round [534] log likelihood: -8003.281755
EM: Round [535] log likelihood: -8003.280767
EM: Round [536] log likelihood: -8003.279781
EM: Round [537] log likelihood: -8003.278796
EM: Round [538] log likelihood: -8003.277812
EM: Round [539] log likelihood: -8003.276830
EM: Round [540] log likelihood: -8003.275849
EM: Round [541] log likelihood: -8003.274870
EM: Round [542] log likelihood: -8003.273892
EM: Round [543] log likelihood: -8003.272915
EM: Round [544] log likelihood: -8003.271940
EM: Round [545] log likelihood: -8003.270966
EM: Round [546] log likelihood: -8003.269994
EM: Round [547] log likelihood: -8003.269023
EM: Round [548] log likelihood: -8003.268053
EM: Round [549] log likelihood: -8003.267085
EM: Round [550] log likelihood: -8003.266118
EM: Round [551] log likelihood: -8003.265152
EM: Round [552] log likelihood: -8003.264188
EM: Round [553] log likelihood: -8003.263225
EM: Round [554] log likelihood: -8003.262264
EM: Round [555] log likelihood: -8003.261303
EM: Round [556] log likelihood: -8003.260345
EM: Round [557] log likelihood: -8003.259387
EM: Round [558] log likelihood: -8003.258431
EM: Round [559] log likelihood: -8003.257476
EM: Round [560] log likelihood: -8003.256523
EM: Round [561] log likelihood: -8003.255571
EM: Round [562] log likelihood: -8003.254620
EM: Round [563] log likelihood: -8003.253670
EM: Round [564] log likelihood: -8003.252722
EM: Round [565] log likelihood: -8003.251775
EM: Round [566] log likelihood: -8003.250830
EM: Round [567] log likelihood: -8003.249885
EM: Round [568] log likelihood: -8003.248943
EM: Round [569] log likelihood: -8003.248001
EM: Round [570] log likelihood: -8003.247061
EM: Round [571] log likelihood: -8003.246122
EM: Round [572] log likelihood: -8003.245184
EM: Round [573] log likelihood: -8003.244247
EM: Round [574] log likelihood: -8003.243312
EM: Round [575] log likelihood: -8003.242379
EM: Round [576] log likelihood: -8003.241446
EM: Round [577] log likelihood: -8003.240515
EM: Round [578] log likelihood: -8003.239585
EM: Round [579] log likelihood: -8003.238656
EM: Round [580] log likelihood: -8003.237729
EM: Round [581] log likelihood: -8003.236802
EM: Round [582] log likelihood: -8003.235878
EM: Round [583] log likelihood: -8003.234954
EM: Round [584] log likelihood: -8003.234032
EM: Round [585] log likelihood: -8003.233111
EM: Round [586] log likelihood: -8003.232191
EM: Round [587] log likelihood: -8003.231272
EM: Round [588] log likelihood: -8003.230355
EM: Round [589] log likelihood: -8003.229439
EM: Round [590] log likelihood: -8003.228524
EM: Round [591] log likelihood: -8003.227610
EM: Round [592] log likelihood: -8003.226698
EM: Round [593] log likelihood: -8003.225787
EM: Round [594] log likelihood: -8003.224877
EM: Round [595] log likelihood: -8003.223968
EM: Round [596] log likelihood: -8003.223061
EM: Round [597] log likelihood: -8003.222154
EM: Round [598] log likelihood: -8003.221249
EM: Round [599] log likelihood: -8003.220346
EM: Round [600] log likelihood: -8003.219443
EM: Round [601] log likelihood: -8003.218542
EM: Round [602] log likelihood: -8003.217642
EM: Round [603] log likelihood: -8003.216743
EM: Round [604] log likelihood: -8003.215845
EM: Round [605] log likelihood: -8003.214949
EM: Round [606] log likelihood: -8003.214053
EM: Round [607] log likelihood: -8003.213159
EM: Round [608] log likelihood: -8003.212266
EM: Round [609] log likelihood: -8003.211375
EM: Round [610] log likelihood: -8003.210484
EM: Round [611] log likelihood: -8003.209595
EM: Round [612] log likelihood: -8003.208706
EM: Round [613] log likelihood: -8003.207819
EM: Round [614] log likelihood: -8003.206934
EM: Round [615] log likelihood: -8003.206049
EM: Round [616] log likelihood: -8003.205166
EM: Round [617] log likelihood: -8003.204283
EM: Round [618] log likelihood: -8003.203402
EM: Round [619] log likelihood: -8003.202522
EM: Round [620] log likelihood: -8003.201644
EM: Round [621] log likelihood: -8003.200766
EM: Round [622] log likelihood: -8003.199890
EM: Round [623] log likelihood: -8003.199014
EM: Round [624] log likelihood: -8003.198140
EM: Round [625] log likelihood: -8003.197267
EM: Round [626] log likelihood: -8003.196395
EM: Round [627] log likelihood: -8003.195525
EM: Round [628] log likelihood: -8003.194655
EM: Round [629] log likelihood: -8003.193787
EM: Round [630] log likelihood: -8003.192919
EM: Round [631] log likelihood: -8003.192053
EM: Round [632] log likelihood: -8003.191188
EM: Round [633] log likelihood: -8003.190324
EM: Round [634] log likelihood: -8003.189462
EM: Round [635] log likelihood: -8003.188600
EM: Round [636] log likelihood: -8003.187739
EM: Round [637] log likelihood: -8003.186880
EM: Round [638] log likelihood: -8003.186022
EM: Round [639] log likelihood: -8003.185165
EM: Round [640] log likelihood: -8003.184309
EM: Round [641] log likelihood: -8003.183454
EM: Round [642] log likelihood: -8003.182600
EM: Round [643] log likelihood: -8003.181747
EM: Round [644] log likelihood: -8003.180896
EM: Round [645] log likelihood: -8003.180045
EM: Round [646] log likelihood: -8003.179196
EM: Round [647] log likelihood: -8003.178348
EM: Round [648] log likelihood: -8003.177500
EM: Round [649] log likelihood: -8003.176654
EM: Round [650] log likelihood: -8003.175809
EM: Round [651] log likelihood: -8003.174965
EM: Round [652] log likelihood: -8003.174123
EM: Round [653] log likelihood: -8003.173281
EM: Round [654] log likelihood: -8003.172440
EM: Round [655] log likelihood: -8003.171601
EM: Round [656] log likelihood: -8003.170762
EM: Round [657] log likelihood: -8003.169925
EM: Round [658] log likelihood: -8003.169088
EM: Round [659] log likelihood: -8003.168253
EM: Round [660] log likelihood: -8003.167419
EM: Round [661] log likelihood: -8003.166586
EM: Round [662] log likelihood: -8003.165754
EM: Round [663] log likelihood: -8003.164923
EM: Round [664] log likelihood: -8003.164093
EM: Round [665] log likelihood: -8003.163264
EM: Round [666] log likelihood: -8003.162436
EM: Round [667] log likelihood: -8003.161609
EM: Round [668] log likelihood: -8003.160783
EM: Round [669] log likelihood: -8003.159959
EM: Round [670] log likelihood: -8003.159135
EM: Round [671] log likelihood: -8003.158312
EM: Round [672] log likelihood: -8003.157491
EM: Round [673] log likelihood: -8003.156670
EM: Round [674] log likelihood: -8003.155851
EM: Round [675] log likelihood: -8003.155032
EM: Round [676] log likelihood: -8003.154215
EM: Round [677] log likelihood: -8003.153398
EM: Round [678] log likelihood: -8003.152583
EM: Round [679] log likelihood: -8003.151769
EM: Round [680] log likelihood: -8003.150955
EM: Round [681] log likelihood: -8003.150143
EM: Round [682] log likelihood: -8003.149332
EM: Round [683] log likelihood: -8003.148521
EM: Round [684] log likelihood: -8003.147712
EM: Round [685] log likelihood: -8003.146904
EM: Round [686] log likelihood: -8003.146097
EM: Round [687] log likelihood: -8003.145291
EM: Round [688] log likelihood: -8003.144485
EM: Round [689] log likelihood: -8003.143681
EM: Round [690] log likelihood: -8003.142878
EM: Round [691] log likelihood: -8003.142076
EM: Round [692] log likelihood: -8003.141275
EM: Round [693] log likelihood: -8003.140474
EM: Round [694] log likelihood: -8003.139675
EM: Round [695] log likelihood: -8003.138877
EM: Round [696] log likelihood: -8003.138080
EM: Round [697] log likelihood: -8003.137283
EM: Round [698] log likelihood: -8003.136488
EM: Round [699] log likelihood: -8003.135694
EM: Round [700] log likelihood: -8003.134901
EM: Round [701] log likelihood: -8003.134108
EM: Round [702] log likelihood: -8003.133317
EM: Round [703] log likelihood: -8003.132527
EM: Round [704] log likelihood: -8003.131737
EM: Round [705] log likelihood: -8003.130949
EM: Round [706] log likelihood: -8003.130162
EM: Round [707] log likelihood: -8003.129375
EM: Round [708] log likelihood: -8003.128590
EM: Round [709] log likelihood: -8003.127805
EM: Round [710] log likelihood: -8003.127021
EM: Round [711] log likelihood: -8003.126239
EM: Round [712] log likelihood: -8003.125457
EM: Round [713] log likelihood: -8003.124677
EM: Round [714] log likelihood: -8003.123897
EM: Round [715] log likelihood: -8003.123118
EM: Round [716] log likelihood: -8003.122340
EM: Round [717] log likelihood: -8003.121563
EM: Round [718] log likelihood: -8003.120787
EM: Round [719] log likelihood: -8003.120012
EM: Round [720] log likelihood: -8003.119238
EM: Round [721] log likelihood: -8003.118465
EM: Round [722] log likelihood: -8003.117693
EM: Round [723] log likelihood: -8003.116922
EM: Round [724] log likelihood: -8003.116152
EM: Round [725] log likelihood: -8003.115382
EM: Round [726] log likelihood: -8003.114614
EM: Round [727] log likelihood: -8003.113847
EM: Round [728] log likelihood: -8003.113080
EM: Round [729] log likelihood: -8003.112314
EM: Round [730] log likelihood: -8003.111550
EM: Round [731] log likelihood: -8003.110786
EM: Round [732] log likelihood: -8003.110023
EM: Round [733] log likelihood: -8003.109261
EM: Round [734] log likelihood: -8003.108500
EM: Round [735] log likelihood: -8003.107740
EM: Round [736] log likelihood: -8003.106981
EM: Round [737] log likelihood: -8003.106223
EM: Round [738] log likelihood: -8003.105465
EM: Round [739] log likelihood: -8003.104709
EM: Round [740] log likelihood: -8003.103953
EM: Round [741] log likelihood: -8003.103199
EM: Round [742] log likelihood: -8003.102445
EM: Round [743] log likelihood: -8003.101692
EM: Round [744] log likelihood: -8003.100940
EM: Round [745] log likelihood: -8003.100189
EM: Round [746] log likelihood: -8003.099439
EM: Round [747] log likelihood: -8003.098690
EM: Round [748] log likelihood: -8003.097941
EM: Round [749] log likelihood: -8003.097194
EM: Round [750] log likelihood: -8003.096447
EM: Round [751] log likelihood: -8003.095702
EM: Round [752] log likelihood: -8003.094957
EM: Round [753] log likelihood: -8003.094213
EM: Round [754] log likelihood: -8003.093470
EM: Round [755] log likelihood: -8003.092728
EM: Round [756] log likelihood: -8003.091987
EM: Round [757] log likelihood: -8003.091246
EM: Round [758] log likelihood: -8003.090507
EM: Round [759] log likelihood: -8003.089768
EM: Round [760] log likelihood: -8003.089030
EM: Round [761] log likelihood: -8003.088294
EM: Round [762] log likelihood: -8003.087558
EM: Round [763] log likelihood: -8003.086822
EM: Round [764] log likelihood: -8003.086088
EM: Round [765] log likelihood: -8003.085355
EM: Round [766] log likelihood: -8003.084622
EM: Round [767] log likelihood: -8003.083890
EM: Round [768] log likelihood: -8003.083160
EM: Round [769] log likelihood: -8003.082430
EM: Round [770] log likelihood: -8003.081701
EM: Round [771] log likelihood: -8003.080972
EM: Round [772] log likelihood: -8003.080245
EM: Round [773] log likelihood: -8003.079518
EM: Round [774] log likelihood: -8003.078793
EM: Round [775] log likelihood: -8003.078068
EM: Round [776] log likelihood: -8003.077344
EM: Round [777] log likelihood: -8003.076621
EM: Round [778] log likelihood: -8003.075898
EM: Round [779] log likelihood: -8003.075177
EM: Round [780] log likelihood: -8003.074456
EM: Round [781] log likelihood: -8003.073736
EM: Round [782] log likelihood: -8003.073017
EM: Round [783] log likelihood: -8003.072299
EM: Round [784] log likelihood: -8003.071582
EM: Round [785] log likelihood: -8003.070866
EM: Round [786] log likelihood: -8003.070150
EM: Round [787] log likelihood: -8003.069435
EM: Round [788] log likelihood: -8003.068721
EM: Round [789] log likelihood: -8003.068008
EM: Round [790] log likelihood: -8003.067296
EM: Round [791] log likelihood: -8003.066584
EM: Round [792] log likelihood: -8003.065874
EM: Round [793] log likelihood: -8003.065164
EM: Round [794] log likelihood: -8003.064455
EM: Round [795] log likelihood: -8003.063747
EM: Round [796] log likelihood: -8003.063039
EM: Round [797] log likelihood: -8003.062333
EM: Round [798] log likelihood: -8003.061627
EM: Round [799] log likelihood: -8003.060922
EM: Round [800] log likelihood: -8003.060218
EM: Round [801] log likelihood: -8003.059514
EM: Round [802] log likelihood: -8003.058812
EM: Round [803] log likelihood: -8003.058110
EM: Round [804] log likelihood: -8003.057409
EM: Round [805] log likelihood: -8003.056709
EM: Round [806] log likelihood: -8003.056010
EM: Round [807] log likelihood: -8003.055311
EM: Round [808] log likelihood: -8003.054613
EM: Round [809] log likelihood: -8003.053916
EM: Round [810] log likelihood: -8003.053220
EM: Round [811] log likelihood: -8003.052525
EM: Round [812] log likelihood: -8003.051830
EM: Round [813] log likelihood: -8003.051137
EM: Round [814] log likelihood: -8003.050444
EM: Round [815] log likelihood: -8003.049752
EM: Round [816] log likelihood: -8003.049060
EM: Round [817] log likelihood: -8003.048370
EM: Round [818] log likelihood: -8003.047680
EM: Round [819] log likelihood: -8003.046991
EM: Round [820] log likelihood: -8003.046302
EM: Round [821] log likelihood: -8003.045615
EM: Round [822] log likelihood: -8003.044928
EM: Round [823] log likelihood: -8003.044242
EM: Round [824] log likelihood: -8003.043557
EM: Round [825] log likelihood: -8003.042873
EM: Round [826] log likelihood: -8003.042189
EM: Round [827] log likelihood: -8003.041506
EM: Round [828] log likelihood: -8003.040824
EM: Round [829] log likelihood: -8003.040143
EM: Round [830] log likelihood: -8003.039462
EM: Round [831] log likelihood: -8003.038783
EM: Round [832] log likelihood: -8003.038104
EM: Round [833] log likelihood: -8003.037425
EM: Round [834] log likelihood: -8003.036748
EM: Round [835] log likelihood: -8003.036071
EM: Round [836] log likelihood: -8003.035395
EM: Round [837] log likelihood: -8003.034720
EM: Round [838] log likelihood: -8003.034045
EM: Round [839] log likelihood: -8003.033372
EM: Round [840] log likelihood: -8003.032699
EM: Round [841] log likelihood: -8003.032027
EM: Round [842] log likelihood: -8003.031355
EM: Round [843] log likelihood: -8003.030684
EM: Round [844] log likelihood: -8003.030014
EM: Round [845] log likelihood: -8003.029345
EM: Round [846] log likelihood: -8003.028677
EM: Round [847] log likelihood: -8003.028009
EM: Round [848] log likelihood: -8003.027342
EM: Round [849] log likelihood: -8003.026676
EM: Round [850] log likelihood: -8003.026010
EM: Round [851] log likelihood: -8003.025346
EM: Round [852] log likelihood: -8003.024682
EM: Round [853] log likelihood: -8003.024018
EM: Round [854] log likelihood: -8003.023356
EM: Round [855] log likelihood: -8003.022694
EM: Round [856] log likelihood: -8003.022033
EM: Round [857] log likelihood: -8003.021372
EM: Round [858] log likelihood: -8003.020713
EM: Round [859] log likelihood: -8003.020054
EM: Round [860] log likelihood: -8003.019396
EM: Round [861] log likelihood: -8003.018738
EM: Round [862] log likelihood: -8003.018082
EM: Round [863] log likelihood: -8003.017425
EM: Round [864] log likelihood: -8003.016770
EM: Round [865] log likelihood: -8003.016116
EM: Round [866] log likelihood: -8003.015462
EM: Round [867] log likelihood: -8003.014809
EM: Round [868] log likelihood: -8003.014156
EM: Round [869] log likelihood: -8003.013505
EM: Round [870] log likelihood: -8003.012854
EM: Round [871] log likelihood: -8003.012203
EM: Round [872] log likelihood: -8003.011554
EM: Round [873] log likelihood: -8003.010905
EM: Round [874] log likelihood: -8003.010257
EM: Round [875] log likelihood: -8003.009609
EM: Round [876] log likelihood: -8003.008963
EM: Round [877] log likelihood: -8003.008317
EM: Round [878] log likelihood: -8003.007671
EM: Round [879] log likelihood: -8003.007027
EM: Round [880] log likelihood: -8003.006383
EM: Round [881] log likelihood: -8003.005740
EM: Round [882] log likelihood: -8003.005097
EM: Round [883] log likelihood: -8003.004455
EM: Round [884] log likelihood: -8003.003814
EM: Round [885] log likelihood: -8003.003174
EM: Round [886] log likelihood: -8003.002534
EM: Round [887] log likelihood: -8003.001895
EM: Round [888] log likelihood: -8003.001257
EM: Round [889] log likelihood: -8003.000619
EM: Round [890] log likelihood: -8002.999982
EM: Round [891] log likelihood: -8002.999346
EM: Round [892] log likelihood: -8002.998710
EM: Round [893] log likelihood: -8002.998075
EM: Round [894] log likelihood: -8002.997441
EM: Round [895] log likelihood: -8002.996807
EM: Round [896] log likelihood: -8002.996175
EM: Round [897] log likelihood: -8002.995542
EM: Round [898] log likelihood: -8002.994911
EM: Round [899] log likelihood: -8002.994280
EM: Round [900] log likelihood: -8002.993650
EM: Round [901] log likelihood: -8002.993020
EM: Round [902] log likelihood: -8002.992392
EM: Round [903] log likelihood: -8002.991764
EM: Round [904] log likelihood: -8002.991136
EM: Round [905] log likelihood: -8002.990509
EM: Round [906] log likelihood: -8002.989883
EM: Round [907] log likelihood: -8002.989258
EM: Round [908] log likelihood: -8002.988633
EM: Round [909] log likelihood: -8002.988009
EM: Round [910] log likelihood: -8002.987386
EM: Round [911] log likelihood: -8002.986763
EM: Round [912] log likelihood: -8002.986141
EM: Round [913] log likelihood: -8002.985519
EM: Round [914] log likelihood: -8002.984899
EM: Round [915] log likelihood: -8002.984278
EM: Round [916] log likelihood: -8002.983659
EM: Round [917] log likelihood: -8002.983040
EM: Round [918] log likelihood: -8002.982422
EM: Round [919] log likelihood: -8002.981805
EM: Round [920] log likelihood: -8002.981188
EM: Round [921] log likelihood: -8002.980572
EM: Round [922] log likelihood: -8002.979956
EM: Round [923] log likelihood: -8002.979341
EM: Round [924] log likelihood: -8002.978727
EM: Round [925] log likelihood: -8002.978114
EM: Round [926] log likelihood: -8002.977501
EM: Round [927] log likelihood: -8002.976888
EM: Round [928] log likelihood: -8002.976277
EM: Round [929] log likelihood: -8002.975666
EM: Round [930] log likelihood: -8002.975055
EM: Round [931] log likelihood: -8002.974446
EM: Round [932] log likelihood: -8002.973837
EM: Round [933] log likelihood: -8002.973228
EM: Round [934] log likelihood: -8002.972621
EM: Round [935] log likelihood: -8002.972013
EM: Round [936] log likelihood: -8002.971407
EM: Round [937] log likelihood: -8002.970801
EM: Round [938] log likelihood: -8002.970196
EM: Round [939] log likelihood: -8002.969591
EM: Round [940] log likelihood: -8002.968987
EM: Round [941] log likelihood: -8002.968384
EM: Round [942] log likelihood: -8002.967781
EM: Round [943] log likelihood: -8002.967179
EM: Round [944] log likelihood: -8002.966578
EM: Round [945] log likelihood: -8002.965977
EM: Round [946] log likelihood: -8002.965377
EM: Round [947] log likelihood: -8002.964777
EM: Round [948] log likelihood: -8002.964179
EM: Round [949] log likelihood: -8002.963580
EM: Round [950] log likelihood: -8002.962983
EM: Round [951] log likelihood: -8002.962386
EM: Round [952] log likelihood: -8002.961789
EM: Round [953] log likelihood: -8002.961193
EM: Round [954] log likelihood: -8002.960598
EM: Round [955] log likelihood: -8002.960004
EM: Round [956] log likelihood: -8002.959410
EM: Round [957] log likelihood: -8002.958816
EM: Round [958] log likelihood: -8002.958224
EM: Round [959] log likelihood: -8002.957632
EM: Round [960] log likelihood: -8002.957040
EM: Round [961] log likelihood: -8002.956449
EM: Round [962] log likelihood: -8002.955859
EM: Round [963] log likelihood: -8002.955269
EM: Round [964] log likelihood: -8002.954680
EM: Round [965] log likelihood: -8002.954092
EM: Round [966] log likelihood: -8002.953504
EM: Round [967] log likelihood: -8002.952917
EM: Round [968] log likelihood: -8002.952330
EM: Round [969] log likelihood: -8002.951744
EM: Round [970] log likelihood: -8002.951159
EM: Round [971] log likelihood: -8002.950574
EM: Round [972] log likelihood: -8002.949990
EM: Round [973] log likelihood: -8002.949406
EM: Round [974] log likelihood: -8002.948823
EM: Round [975] log likelihood: -8002.948241
EM: Round [976] log likelihood: -8002.947659
EM: Round [977] log likelihood: -8002.947078
EM: Round [978] log likelihood: -8002.946497
EM: Round [979] log likelihood: -8002.945917
EM: Round [980] log likelihood: -8002.945338
EM: Round [981] log likelihood: -8002.944759
EM: Round [982] log likelihood: -8002.944181
EM: Round [983] log likelihood: -8002.943603
EM: Round [984] log likelihood: -8002.943026
EM: Round [985] log likelihood: -8002.942449
EM: Round [986] log likelihood: -8002.941874
EM: Round [987] log likelihood: -8002.941298
EM: Round [988] log likelihood: -8002.940724
EM: Round [989] log likelihood: -8002.940149
EM: Round [990] log likelihood: -8002.939576
EM: Round [991] log likelihood: -8002.939003
EM: Round [992] log likelihood: -8002.938431
EM: Round [993] log likelihood: -8002.937859
EM: Round [994] log likelihood: -8002.937288
EM: Round [995] log likelihood: -8002.936717
EM: Round [996] log likelihood: -8002.936147
EM: Round [997] log likelihood: -8002.935577
EM: Round [998] log likelihood: -8002.935009
EM: Round [999] log likelihood: -8002.934440
EM: Round [1000] log likelihood: -8002.933872
EM: Round [1001] log likelihood: -8002.933305
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1_1.fastp.fastq.gz /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
-total frags in /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1_1.fastp.fastq.gz: 294468379
Execution Time = 5.87 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1_1.fastp.fastq.gz /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/add_FFPM.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa --gtf /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf > /tmp/nxf.cfy5G5uomt/fi_workdir/microH.dat
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fa --gtf /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gtf > /tmp/nxf.cfy5G5uomt/fi_workdir/microH.dat
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/microH.dat.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.cfy5G5uomt/fi_workdir/microH.dat /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.cfy5G5uomt/fi_workdir/microH.dat /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/append_microH_info.ok
Running: cp /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.tsv
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.tsv
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/cp_final.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/final.abridged.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.cfy5G5uomt --json_outfile /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_inspector_web.json --file_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_1
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.cfy5G5uomt --json_outfile /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_inspector_web.json --file_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_1
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/create_fi_igvjs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_inspector_web.json --input_file_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_1 --html_output /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_inspector_web.html
Warning - not locating file: /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.gmap_trinity_GG.fusions.gff3.bed
Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_inspector_web.json --input_file_prefix 786-O_FFPE_RNA_0001_B23LG7FLT4_1 --html_output /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.fusion_inspector_web.html
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/fusion_reports_html.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv.annotated
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv.annotated
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/fusion_annotator.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000285169.2]
WARNING, no entry stored in dbm for [ENSG00000285169.2]
WARNING, no entry stored in dbm for [ENSG00000285169.2]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.cfy5G5uomt/ctat_genome_lib_build_dir > /tmp/nxf.cfy5G5uomt/786-O_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
Running: touch /tmp/nxf.cfy5G5uomt/chckpts_dir/fusion_coding_region_effect.ok
ls: cannot access 'IGV_inputs': No such file or directory